AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014767.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014767.01.T01 MTR_3g463720 90.189 265 4 1 13 277 1 243 1.88e-175 483
MsG0380014767.01.T01 MTR_3g463720 89.256 242 4 1 36 277 23 242 1.54e-157 438
MsG0380014767.01.T01 MTR_4g088950 58.271 266 88 2 12 277 6 248 1.17e-105 307
MsG0380014767.01.T01 MTR_2g013080 58.846 260 85 1 18 277 14 251 6.18e-104 303
MsG0380014767.01.T01 MTR_4g015600 54.086 257 96 1 9 265 1 235 1.10e-98 290
MsG0380014767.01.T01 MTR_7g068290 56.275 247 85 2 18 263 5 229 3.01e-94 278
MsG0380014767.01.T01 MTR_4g015600 50.000 200 78 1 9 208 1 178 1.13e-68 211
MsG0380014767.01.T01 MTR_4g088950 56.345 197 63 2 12 208 6 179 2.72e-68 210
MsG0380014767.01.T01 MTR_2g013080 56.545 191 61 1 18 208 14 182 1.14e-67 210
MsG0380014767.01.T01 MTR_4g015600 52.778 180 63 1 86 265 25 182 1.91e-63 198
MsG0380014767.01.T01 MTR_8g079910 41.985 262 123 4 18 272 10 249 8.60e-60 191
MsG0380014767.01.T01 MTR_3g086130 40.909 264 125 4 18 272 13 254 1.67e-55 180
MsG0380014767.01.T01 MTR_4g015600 58.400 125 52 0 141 265 2 126 1.15e-48 158
MsG0380014767.01.T01 MTR_8g079910 39.899 198 90 4 18 208 10 185 5.61e-37 130
MsG0380014767.01.T01 MTR_4g015600 45.528 123 45 1 86 208 25 125 8.10e-34 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014767.01.T01 AT3G47160 58.268 254 84 1 13 266 1 232 3.77e-106 308
MsG0380014767.01.T01 AT5G01520 57.736 265 89 2 13 277 1 242 1.26e-102 299
MsG0380014767.01.T01 AT3G47160 55.639 266 84 2 13 266 1 244 1.55e-102 300
MsG0380014767.01.T01 AT5G58787 58.301 259 83 2 13 271 1 234 1.18e-98 289
MsG0380014767.01.T01 AT3G47160 57.604 217 70 1 50 266 1 195 6.59e-88 261
MsG0380014767.01.T01 AT5G58787 54.440 259 78 2 13 271 1 219 6.69e-88 261
MsG0380014767.01.T01 AT5G58787 52.301 239 74 2 33 271 2 200 8.82e-76 230
MsG0380014767.01.T01 AT5G01520 56.085 189 61 1 18 206 5 171 4.89e-69 211
MsG0380014767.01.T01 AT1G24440 40.074 272 137 4 9 276 1 250 2.73e-60 192
MsG0380014767.01.T01 AT1G13195 39.464 261 129 4 18 272 16 253 1.35e-57 185
MsG0380014767.01.T01 AT1G24440 39.496 238 118 4 43 276 3 218 7.34e-50 164
MsG0380014767.01.T01 AT1G13195 38.095 231 114 4 48 272 8 215 1.14e-47 158

Find 49 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAATTATTGTCCAAAA+TGG 0.208869 3:+59660095 None:intergenic
CAGAATCTTACAATTCTCTT+TGG 0.221212 3:+59660229 None:intergenic
TTGTACTTGTAAATCCATTT+TGG 0.225211 3:-59660109 MsG0380014767.01.T01:three_prime_UTR
ATAAGAATGTATTGTTATCT+TGG 0.300849 3:-59661605 MsG0380014767.01.T01:CDS
TCAGAAAGGTGTCACAGATT+TGG 0.314514 3:-59661449 MsG0380014767.01.T01:CDS
CACATTTGGTGGCAACAATT+AGG 0.316903 3:+59661286 None:intergenic
CACCAGAGTTTACTCTCTTC+AGG 0.343822 3:+59660303 None:intergenic
TCAACATTTATGCAGACATA+TGG 0.362672 3:-59661705 MsG0380014767.01.T01:intron
TACCGACTTGCTGGTGCTCT+TGG 0.372137 3:-59662161 MsG0380014767.01.T01:CDS
TGGACTGACTACCGACTTGC+TGG 0.374726 3:-59662170 MsG0380014767.01.T01:CDS
CATCCTCCTTCTTTATCCCT+TGG 0.389896 3:+59662251 None:intergenic
TTTATGCAGACATATGGAAA+TGG 0.389922 3:-59661699 MsG0380014767.01.T01:intron
CTCCTTCTTTATCCCTTGGA+TGG 0.400445 3:+59662255 None:intergenic
TGTAACACTTGAAACACATT+TGG 0.405912 3:+59661272 None:intergenic
GAGTAAACTCTGGTGACCTT+TGG 0.424393 3:-59660295 MsG0380014767.01.T01:CDS
ACAGGAATGTGGAGTTTGCT+TGG 0.445145 3:-59661332 MsG0380014767.01.T01:CDS
TAAACACCTGAATGAGCAAT+AGG 0.451448 3:+59661573 None:intergenic
CTTCAGGCTATCCCGGCAAA+AGG 0.462552 3:+59660319 None:intergenic
GCTCAGAATTCTAATTTATG+TGG 0.464503 3:-59662135 MsG0380014767.01.T01:intron
AACACTTGAAACACATTTGG+TGG 0.465530 3:+59661275 None:intergenic
TTCAGGCTATCCCGGCAAAA+GGG 0.465840 3:+59660320 None:intergenic
TAGGACACATGTCTTGGGTC+TGG 0.466508 3:+59660173 None:intergenic
GGATCATAGGACACATGTCT+TGG 0.474901 3:+59660167 None:intergenic
CTTGGGTCTGGAATAATAAG+AGG 0.478210 3:+59660185 None:intergenic
GTTTCAAGTGTTACAGAGAA+TGG 0.480502 3:-59661264 MsG0380014767.01.T01:intron
TTACTCTCTTCAGGCTATCC+CGG 0.484027 3:+59660312 None:intergenic
TTCTGAAGTTGCAATAGAGC+AGG 0.493865 3:+59661466 None:intergenic
AATTGACATTGAAAGAGAAC+AGG 0.495415 3:-59661350 MsG0380014767.01.T01:CDS
GATCATAGGACACATGTCTT+GGG 0.498896 3:+59660168 None:intergenic
CAAGTGACATTGTTGATGTT+GGG 0.499712 3:-59660259 MsG0380014767.01.T01:CDS
TTATGCAGACATATGGAAAT+GGG 0.508592 3:-59661698 MsG0380014767.01.T01:intron
GTGTCACAGATTTGGAAGAA+AGG 0.513362 3:-59661441 MsG0380014767.01.T01:CDS
AAGGAGGATGCTTTCAAATG+AGG 0.531201 3:-59662238 MsG0380014767.01.T01:CDS
TCAGGGCATTAGGCCATCCA+AGG 0.533527 3:-59662268 MsG0380014767.01.T01:intron
ACAAGTGACATTGTTGATGT+TGG 0.533887 3:-59660260 MsG0380014767.01.T01:CDS
GGATTTACAAGTACAATGAA+AGG 0.553386 3:+59660116 None:intergenic
CTACTATTTCAATATATGAA+AGG 0.564225 3:-59661671 MsG0380014767.01.T01:CDS
GATTTACAAGTACAATGAAA+GGG 0.577355 3:+59660117 None:intergenic
GCTCTATTGCAACTTCAGAA+AGG 0.581652 3:-59661463 MsG0380014767.01.T01:CDS
TTGTGTCTGTGTAAATCCAA+AGG 0.597551 3:+59660279 None:intergenic
CAGGGCATTAGGCCATCCAA+GGG 0.597884 3:-59662267 MsG0380014767.01.T01:CDS
GGCCATCCAAGGGATAAAGA+AGG 0.603064 3:-59662257 MsG0380014767.01.T01:CDS
ATTGAAAGAGAACAGGAATG+TGG 0.606235 3:-59661343 MsG0380014767.01.T01:CDS
GGAATGTGGAGTTTGCTTGG+AGG 0.613843 3:-59661329 MsG0380014767.01.T01:CDS
TCAGGCTATCCCGGCAAAAG+GGG 0.616325 3:+59660321 None:intergenic
AACCAAGAGCACCAGCAAGT+CGG 0.642149 3:+59662159 None:intergenic
CATCCAAGGGATAAAGAAGG+AGG 0.651855 3:-59662254 MsG0380014767.01.T01:CDS
AGCCTGAAGAGAGTAAACTC+TGG 0.666391 3:-59660305 MsG0380014767.01.T01:CDS
GAGGCTATCATACAGTCCAG+TGG 0.705446 3:-59662219 MsG0380014767.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAAAATATAAAATCAA+TGG + Chr3:59662466-59662485 None:intergenic 10.0%
!!! AAAAGAATAAATTTTTAATC+TGG + Chr3:59660295-59660314 None:intergenic 10.0%
!!! AAAGAATAAATTTTTAATCT+GGG + Chr3:59660294-59660313 None:intergenic 10.0%
!!! ATAAAACTAAGTTTAATTTT+TGG - Chr3:59662098-59662117 MsG0380014767.01.T01:intron 10.0%
!! AAAATGTCAAATATAAAACT+TGG + Chr3:59662133-59662152 None:intergenic 15.0%
!! CCAATAATTTATAAAAGTAA+GGG + Chr3:59661330-59661349 None:intergenic 15.0%
!!! ACAATTTTATTGTAAGTTTA+AGG - Chr3:59661622-59661641 MsG0380014767.01.T01:CDS 15.0%
!!! CATTTTAGTGTTTTTTTTTT+TGG - Chr3:59660865-59660884 MsG0380014767.01.T01:intron 15.0%
!!! CCTTACTTTTATAAATTATT+GGG - Chr3:59661328-59661347 MsG0380014767.01.T01:CDS 15.0%
!!! TTTTTTTGTGAAGAATTTTT+GGG - Chr3:59660311-59660330 MsG0380014767.01.T01:CDS 15.0%
!! AAAGAATTTGTATGATACTT+GGG - Chr3:59660706-59660725 MsG0380014767.01.T01:intron 20.0%
!! AGAATAAACTAGTAACTAAT+TGG + Chr3:59662851-59662870 None:intergenic 20.0%
!! AGTTAAATTATTGTCCAAAA+TGG + Chr3:59663164-59663183 None:intergenic 20.0%
!! ATAAGAATGTATTGTTATCT+TGG - Chr3:59661651-59661670 MsG0380014767.01.T01:CDS 20.0%
!! CCCAATAATTTATAAAAGTA+AGG + Chr3:59661331-59661350 None:intergenic 20.0%
!! CTACTATTTCAATATATGAA+AGG - Chr3:59661585-59661604 MsG0380014767.01.T01:CDS 20.0%
!! CTTAAGTATGTATATTGTTT+AGG + Chr3:59661154-59661173 None:intergenic 20.0%
!! TTATCATCAAGAACATAAAA+TGG + Chr3:59661715-59661734 None:intergenic 20.0%
!!! ATTTCAGTGAGAATATTTTT+AGG - Chr3:59660099-59660118 MsG0380014767.01.T01:three_prime_UTR 20.0%
!!! CAATCAACTTTTTTAAAAGT+AGG - Chr3:59662248-59662267 MsG0380014767.01.T01:CDS 20.0%
!!! CCCTTACTTTTATAAATTAT+TGG - Chr3:59661327-59661346 MsG0380014767.01.T01:CDS 20.0%
!!! CTTCAAATTCACTTTTTTTA+GGG - Chr3:59660205-59660224 MsG0380014767.01.T01:CDS 20.0%
!!! CTTTTTTTGTGAAGAATTTT+TGG - Chr3:59660310-59660329 MsG0380014767.01.T01:CDS 20.0%
!!! TCATCAACATTGATTAAAAA+AGG + Chr3:59660580-59660599 None:intergenic 20.0%
!!! TCTTCAAATTCACTTTTTTT+AGG - Chr3:59660204-59660223 MsG0380014767.01.T01:CDS 20.0%
!!! TTCTATTTTCTTCAACAAAT+TGG + Chr3:59662583-59662602 None:intergenic 20.0%
!!! TTTTATAAAGTAAAAGCAAC+CGG + Chr3:59662436-59662455 None:intergenic 20.0%
! AACAACCTTTACCTAAAAAA+TGG + Chr3:59663113-59663132 None:intergenic 25.0%
! ACATCTTTGATATCAATGAA+AGG - Chr3:59662336-59662355 MsG0380014767.01.T01:intron 25.0%
! ATATAACTGGAAACAATCTA+AGG + Chr3:59662057-59662076 None:intergenic 25.0%
! ATTGGAAACAAGATAACAAT+AGG + Chr3:59662565-59662584 None:intergenic 25.0%
! CAAAGAATTTGTATGATACT+TGG - Chr3:59660705-59660724 MsG0380014767.01.T01:intron 25.0%
! CAAGTATCATACAAATTCTT+TGG + Chr3:59660707-59660726 None:intergenic 25.0%
! CAATAAGATCTATAGAGAAA+AGG + Chr3:59662276-59662295 None:intergenic 25.0%
! GATTTACAAGTACAATGAAA+GGG + Chr3:59663142-59663161 None:intergenic 25.0%
! GTGAAAAACATCTCAAAATT+TGG + Chr3:59660962-59660981 None:intergenic 25.0%
! GTGTAAGATACAATATATCA+AGG + Chr3:59662829-59662848 None:intergenic 25.0%
! TAACAATCTTTGAATTCATG+AGG + Chr3:59662412-59662431 None:intergenic 25.0%
! TAATGCAAGTAAACAAGTAT+TGG + Chr3:59662799-59662818 None:intergenic 25.0%
! TATGATCAAGTGTATATAAC+TGG + Chr3:59662070-59662089 None:intergenic 25.0%
! TGAATTCAAAGATTGTTATC+CGG - Chr3:59662414-59662433 MsG0380014767.01.T01:intron 25.0%
! TTACCTAAAAAATGGATCAT+AGG + Chr3:59663105-59663124 None:intergenic 25.0%
! TTGATATCAAAGATGTAATG+TGG + Chr3:59662332-59662351 None:intergenic 25.0%
!! ACTTTTATAAATTATTGGGC+CGG - Chr3:59661332-59661351 MsG0380014767.01.T01:CDS 25.0%
!! GCAACAATTTTGTAATTACA+AGG - Chr3:59662751-59662770 MsG0380014767.01.T01:intron 25.0%
!! TTGTACTTGTAAATCCATTT+TGG - Chr3:59663147-59663166 MsG0380014767.01.T01:CDS 25.0%
!!! AATGACTATTTTTTAACGAG+TGG - Chr3:59661447-59661466 MsG0380014767.01.T01:CDS 25.0%
!!! AATTTGCATGTTTGTTGTAT+TGG - Chr3:59660772-59660791 MsG0380014767.01.T01:intron 25.0%
!!! AGTGAGAATATTTTTAGGTA+TGG - Chr3:59660104-59660123 MsG0380014767.01.T01:three_prime_UTR 25.0%
!!! ATGATCCATTTTTTAGGTAA+AGG - Chr3:59663105-59663124 MsG0380014767.01.T01:CDS 25.0%
!!! ATGTTTTTCACTGTTTTTCA+GGG - Chr3:59660971-59660990 MsG0380014767.01.T01:intron 25.0%
!!! GTGAGAATATTTTTAGGTAT+GGG - Chr3:59660105-59660124 MsG0380014767.01.T01:three_prime_UTR 25.0%
!!! TAAACAAGTATTGGTTAGAT+GGG + Chr3:59662790-59662809 None:intergenic 25.0%
!!! TATAAAAGTAAGGGTTTTAG+TGG + Chr3:59661321-59661340 None:intergenic 25.0%
AATGAAGCTGTTTGATAAAC+TGG - Chr3:59660680-59660699 MsG0380014767.01.T01:intron 30.0%
AATTGACATTGAAAGAGAAC+AGG - Chr3:59661906-59661925 MsG0380014767.01.T01:intron 30.0%
AGTACACAAAACGGAAATTA+TGG + Chr3:59661487-59661506 None:intergenic 30.0%
AGTCAAAAAAGTTGAGATTG+AGG - Chr3:59662386-59662405 MsG0380014767.01.T01:intron 30.0%
ATGAAGCTGTTTGATAAACT+GGG - Chr3:59660681-59660700 MsG0380014767.01.T01:intron 30.0%
CAGAATCTTACAATTCTCTT+TGG + Chr3:59663030-59663049 None:intergenic 30.0%
CATAGATTTCAACACAAAAG+TGG + Chr3:59660395-59660414 None:intergenic 30.0%
GATCACTTAGATGATATCAA+TGG - Chr3:59662295-59662314 MsG0380014767.01.T01:intron 30.0%
GCAGAATGTTAAAAGCAAAA+TGG + Chr3:59662190-59662209 None:intergenic 30.0%
GCTCAGAATTCTAATTTATG+TGG - Chr3:59661121-59661140 MsG0380014767.01.T01:intron 30.0%
GGATTTACAAGTACAATGAA+AGG + Chr3:59663143-59663162 None:intergenic 30.0%
TAACTAACTCAAACACATCA+AGG + Chr3:59660934-59660953 None:intergenic 30.0%
TCAACATTTATGCAGACATA+TGG - Chr3:59661551-59661570 MsG0380014767.01.T01:intron 30.0%
TCACAAAATTGATCATGCAA+TGG + Chr3:59660615-59660634 None:intergenic 30.0%
TGTAACACTTGAAACACATT+TGG + Chr3:59661987-59662006 None:intergenic 30.0%
TTACAACTCTAGTTACCAAA+AGG + Chr3:59662162-59662181 None:intergenic 30.0%
TTATGCAGACATATGGAAAT+GGG - Chr3:59661558-59661577 MsG0380014767.01.T01:intron 30.0%
TTGAACATAATCACATGTGT+CGG + Chr3:59660460-59660479 None:intergenic 30.0%
TTTATGCAGACATATGGAAA+TGG - Chr3:59661557-59661576 MsG0380014767.01.T01:intron 30.0%
TTTGACTAAAAATGTGAGAC+AGG + Chr3:59662373-59662392 None:intergenic 30.0%
TTTGTGCTTTGTAGATTGAA+GGG - Chr3:59660537-59660556 MsG0380014767.01.T01:intron 30.0%
! ATGTCTTCGATCAAAAGTAT+AGG + Chr3:59660423-59660442 None:intergenic 30.0%
! CTTCATATTGAAAGCGTATT+TGG + Chr3:59662679-59662698 None:intergenic 30.0%
! GTTTAGTTGAAATTTGAAGC+TGG - Chr3:59660646-59660665 MsG0380014767.01.T01:intron 30.0%
! TGACATTTTGTCAATCCTTT+TGG - Chr3:59662144-59662163 MsG0380014767.01.T01:CDS 30.0%
! TTTTTCTCTCTCTTGTTCAA+TGG - Chr3:59661066-59661085 MsG0380014767.01.T01:intron 30.0%
!! AAACAAGTATTGGTTAGATG+GGG + Chr3:59662789-59662808 None:intergenic 30.0%
!! GATGTTTTTCACTGTTTTTC+AGG - Chr3:59660970-59660989 MsG0380014767.01.T01:intron 30.0%
!! GTAAACAAGTATTGGTTAGA+TGG + Chr3:59662791-59662810 None:intergenic 30.0%
!!! ACAAAGCTGTTTTTTGATTC+AGG - Chr3:59662892-59662911 MsG0380014767.01.T01:intron 30.0%
!!! TGTCCTATGATCCATTTTTT+AGG - Chr3:59663099-59663118 MsG0380014767.01.T01:CDS 30.0%
!!! TTTTTTGATTCAGGTGTCTT+AGG - Chr3:59662901-59662920 MsG0380014767.01.T01:intron 30.0%
AAATGTGAGACAGGAAATTC+AGG + Chr3:59662364-59662383 None:intergenic 35.0%
AACAAGAGAGAGAAAAAGTG+GGG + Chr3:59661063-59661082 None:intergenic 35.0%
AACACTTGAAACACATTTGG+TGG + Chr3:59661984-59662003 None:intergenic 35.0%
AACGGAAATTATGGAAGAAC+TGG + Chr3:59661478-59661497 None:intergenic 35.0%
AACTGGAAACAATCTAAGGA+TGG + Chr3:59662053-59662072 None:intergenic 35.0%
ACAAGTGACATTGTTGATGT+TGG - Chr3:59662996-59663015 MsG0380014767.01.T01:intron 35.0%
ACGCTTTCAATATGAAGTGT+TGG - Chr3:59662682-59662701 MsG0380014767.01.T01:intron 35.0%
ACTGGAAACAATCTAAGGAT+GGG + Chr3:59662052-59662071 None:intergenic 35.0%
ATTGAAAGAGAACAGGAATG+TGG - Chr3:59661913-59661932 MsG0380014767.01.T01:intron 35.0%
ATTGCTCATTCAGGTGTTTA+TGG - Chr3:59661686-59661705 MsG0380014767.01.T01:CDS 35.0%
CAAGTGACATTGTTGATGTT+GGG - Chr3:59662997-59663016 MsG0380014767.01.T01:intron 35.0%
GAACAAGAGAGAGAAAAAGT+GGG + Chr3:59661064-59661083 None:intergenic 35.0%
GACAATGCAAGTACACAAAA+CGG + Chr3:59661496-59661515 None:intergenic 35.0%
GTTTGTGCTTTGTAGATTGA+AGG - Chr3:59660536-59660555 MsG0380014767.01.T01:intron 35.0%
TAAACACCTGAATGAGCAAT+AGG + Chr3:59661686-59661705 None:intergenic 35.0%
TGAACAAGAGAGAGAAAAAG+TGG + Chr3:59661065-59661084 None:intergenic 35.0%
TTGTGCTTTGTAGATTGAAG+GGG - Chr3:59660538-59660557 MsG0380014767.01.T01:intron 35.0%
TTGTGTCTGTGTAAATCCAA+AGG + Chr3:59662980-59662999 None:intergenic 35.0%
! CCTCTTTACACTTTAGAGAT+TGG - Chr3:59662495-59662514 MsG0380014767.01.T01:intron 35.0%
! GTTTCAAGTGTTACAGAGAA+TGG - Chr3:59661992-59662011 MsG0380014767.01.T01:intron 35.0%
!! CCAATCTCTAAAGTGTAAAG+AGG + Chr3:59662498-59662517 None:intergenic 35.0%
!! TGCATGTTTGTTGTATTGGT+GGG - Chr3:59660776-59660795 MsG0380014767.01.T01:intron 35.0%
!! TTGCATGTTTGTTGTATTGG+TGG - Chr3:59660775-59660794 MsG0380014767.01.T01:intron 35.0%
!!! AATTGCTTTTGTTGTTGTGC+AGG - Chr3:59661277-59661296 MsG0380014767.01.T01:CDS 35.0%
!!! ATTGCTTTTGTTGTTGTGCA+GGG - Chr3:59661278-59661297 MsG0380014767.01.T01:CDS 35.0%
AAGGAGGATGCTTTCAAATG+AGG - Chr3:59661018-59661037 MsG0380014767.01.T01:intron 40.0%
GATCATAGGACACATGTCTT+GGG + Chr3:59663091-59663110 None:intergenic 40.0%
GCTCTATTGCAACTTCAGAA+AGG - Chr3:59661793-59661812 MsG0380014767.01.T01:intron 40.0%
GTGTCACAGATTTGGAAGAA+AGG - Chr3:59661815-59661834 MsG0380014767.01.T01:intron 40.0%
TTGTCAAATAGTAGCTGCAG+CGG - Chr3:59661390-59661409 MsG0380014767.01.T01:CDS 40.0%
! CACATTTGGTGGCAACAATT+AGG + Chr3:59661973-59661992 None:intergenic 40.0%
! CTTGGGTCTGGAATAATAAG+AGG + Chr3:59663074-59663093 None:intergenic 40.0%
! GTTTTGCCTATTGCTCATTC+AGG - Chr3:59661677-59661696 MsG0380014767.01.T01:CDS 40.0%
!! TCAGAAAGGTGTCACAGATT+TGG - Chr3:59661807-59661826 MsG0380014767.01.T01:intron 40.0%
!! TTCTGAAGTTGCAATAGAGC+AGG + Chr3:59661793-59661812 None:intergenic 40.0%
!!! TCACTGTTTTTCAGGGCATT+AGG - Chr3:59660978-59660997 MsG0380014767.01.T01:intron 40.0%
AGCCTGAAGAGAGTAAACTC+TGG - Chr3:59662951-59662970 MsG0380014767.01.T01:intron 45.0%
CACCAGAGTTTACTCTCTTC+AGG + Chr3:59662956-59662975 None:intergenic 45.0%
CATCCAAGGGATAAAGAAGG+AGG - Chr3:59661002-59661021 MsG0380014767.01.T01:intron 45.0%
CATCCTCCTTCTTTATCCCT+TGG + Chr3:59661008-59661027 None:intergenic 45.0%
CTCCTTCTTTATCCCTTGGA+TGG + Chr3:59661004-59661023 None:intergenic 45.0%
GACACACAAACTCGAGACAT+CGG + Chr3:59660513-59660532 None:intergenic 45.0%
GAGTAAACTCTGGTGACCTT+TGG - Chr3:59662961-59662980 MsG0380014767.01.T01:intron 45.0%
GGATCATAGGACACATGTCT+TGG + Chr3:59663092-59663111 None:intergenic 45.0%
TCATGTCATGTCATGTCGGA+TGG - Chr3:59662632-59662651 MsG0380014767.01.T01:intron 45.0%
TCCGACATGACATGACATGA+CGG + Chr3:59662632-59662651 None:intergenic 45.0%
TCCGTCATGTCATGTCATGT+CGG - Chr3:59662628-59662647 MsG0380014767.01.T01:intron 45.0%
TTACTCTCTTCAGGCTATCC+CGG + Chr3:59662947-59662966 None:intergenic 45.0%
! ACAGGAATGTGGAGTTTGCT+TGG - Chr3:59661924-59661943 MsG0380014767.01.T01:intron 45.0%
!! GTTTTAGTGGCCTTACCCTT+AGG + Chr3:59661308-59661327 None:intergenic 45.0%
!! TGACATGACGGATATGTGTG+TGG + Chr3:59662620-59662639 None:intergenic 45.0%
AAATAGCGCACCGCACAACA+GGG + Chr3:59661358-59661377 None:intergenic 50.0%
GAGGCTATCATACAGTCCAG+TGG - Chr3:59661037-59661056 MsG0380014767.01.T01:intron 50.0%
GGCCATCCAAGGGATAAAGA+AGG - Chr3:59660999-59661018 MsG0380014767.01.T01:intron 50.0%
TAAATAGCGCACCGCACAAC+AGG + Chr3:59661359-59661378 None:intergenic 50.0%
TAGGACACATGTCTTGGGTC+TGG + Chr3:59663086-59663105 None:intergenic 50.0%
TTCAGGCTATCCCGGCAAAA+GGG + Chr3:59662939-59662958 None:intergenic 50.0%
! CTCAATCTTGCCCCTTTTGC+CGG - Chr3:59662925-59662944 MsG0380014767.01.T01:intron 50.0%
! GGAATGTGGAGTTTGCTTGG+AGG - Chr3:59661927-59661946 MsG0380014767.01.T01:intron 50.0%
! TCAATCTTGCCCCTTTTGCC+GGG - Chr3:59662926-59662945 MsG0380014767.01.T01:intron 50.0%
!! AACCAAGAGCACCAGCAAGT+CGG + Chr3:59661100-59661119 None:intergenic 50.0%
!!! CTTTTGTTGTTGTGCAGGGC+CGG - Chr3:59661282-59661301 MsG0380014767.01.T01:CDS 50.0%
CTTCAGGCTATCCCGGCAAA+AGG + Chr3:59662940-59662959 None:intergenic 55.0%
GAGAGAAAAAGTGGGGCCAC+TGG + Chr3:59661056-59661075 None:intergenic 55.0%
GCTGTGGCACTACAGTGTAG+CGG - Chr3:59661414-59661433 MsG0380014767.01.T01:CDS 55.0%
TCAGGCTATCCCGGCAAAAG+GGG + Chr3:59662938-59662957 None:intergenic 55.0%
! CAGGGCATTAGGCCATCCAA+GGG - Chr3:59660989-59661008 MsG0380014767.01.T01:intron 55.0%
! TAGTGGCCTTACCCTTAGGC+CGG + Chr3:59661304-59661323 None:intergenic 55.0%
! TCAGGGCATTAGGCCATCCA+AGG - Chr3:59660988-59661007 MsG0380014767.01.T01:intron 55.0%
!! TACCGACTTGCTGGTGCTCT+TGG - Chr3:59661095-59661114 MsG0380014767.01.T01:intron 55.0%
!! TGGACTGACTACCGACTTGC+TGG - Chr3:59661086-59661105 MsG0380014767.01.T01:intron 55.0%
! TAGTAGCTGCAGCGGTGCTG+TGG - Chr3:59661398-59661417 MsG0380014767.01.T01:CDS 60.0%
ATTGGGCCGGCCCTGTTGTG+CGG - Chr3:59661345-59661364 MsG0380014767.01.T01:CDS 65.0%
GTTGTGCAGGGCCGGCCTAA+GGG - Chr3:59661290-59661309 MsG0380014767.01.T01:CDS 65.0%
TGTTGTGCAGGGCCGGCCTA+AGG - Chr3:59661289-59661308 MsG0380014767.01.T01:CDS 65.0%
AGCGCACCGCACAACAGGGC+CGG + Chr3:59661354-59661373 None:intergenic 70.0%
GCAGGGCCGGCCTAAGGGTA+AGG - Chr3:59661295-59661314 MsG0380014767.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 59660069 59663209 59660069 ID=MsG0380014767.01;Name=MsG0380014767.01
Chr3 mRNA 59660069 59663209 59660069 ID=MsG0380014767.01.T01;Parent=MsG0380014767.01;Name=MsG0380014767.01.T01;_AED=0.36;_eAED=0.40;_QI=18|0.75|0.8|1|1|1|5|85|277
Chr3 exon 59660069 59660364 59660069 ID=MsG0380014767.01.T01:exon:12618;Parent=MsG0380014767.01.T01
Chr3 exon 59661265 59661499 59661265 ID=MsG0380014767.01.T01:exon:12617;Parent=MsG0380014767.01.T01
Chr3 exon 59661580 59661712 59661580 ID=MsG0380014767.01.T01:exon:12616;Parent=MsG0380014767.01.T01
Chr3 exon 59662136 59662286 59662136 ID=MsG0380014767.01.T01:exon:12615;Parent=MsG0380014767.01.T01
Chr3 exon 59663088 59663209 59663088 ID=MsG0380014767.01.T01:exon:12614;Parent=MsG0380014767.01.T01
Chr3 five_prime_UTR 59663192 59663209 59663192 ID=MsG0380014767.01.T01:five_prime_utr;Parent=MsG0380014767.01.T01
Chr3 CDS 59663088 59663191 59663088 ID=MsG0380014767.01.T01:cds;Parent=MsG0380014767.01.T01
Chr3 CDS 59662136 59662286 59662136 ID=MsG0380014767.01.T01:cds;Parent=MsG0380014767.01.T01
Chr3 CDS 59661580 59661712 59661580 ID=MsG0380014767.01.T01:cds;Parent=MsG0380014767.01.T01
Chr3 CDS 59661265 59661499 59661265 ID=MsG0380014767.01.T01:cds;Parent=MsG0380014767.01.T01
Chr3 CDS 59660154 59660364 59660154 ID=MsG0380014767.01.T01:cds;Parent=MsG0380014767.01.T01
Chr3 three_prime_UTR 59660069 59660153 59660069 ID=MsG0380014767.01.T01:three_prime_utr;Parent=MsG0380014767.01.T01
Gene Sequence

>MsG0380014767.01.T01

ATGCACACACAAATTTCAGTGAGAATATTTTTAGGTATGGGAAAGAGTTTGTTTCAAGAATCTCTGAAAGCTCTAGAAGCTGATATTCAGTATGCTAATACACTGGCATTAGGCCATCCAAGGGATAAAGAAGGAGGATGCTTTCAAATGAGGCTATCATACAGTCCAGTGGCCCCACTTTTTCTCTCTCTTGTTCAATGGACTGACTACCGACTTGCTGGTGCTCTTGGTTTGCTCAGAATTCTAATTTATGTGACATATGGAAATGGGAAGACTACTATTTCAATATATGAAAGGAAAGCAAGCATAAGACAATTTTATTGTAAGTTTAAGGTTGTTAATAAGAATGTATTGTTATCTTGGTTTGTTTTGCCTATTGCTCATTCAGCGATTATATTTCCTGCTCTATTGCAACTTCAGAAAGGTGTCACAGATTTGGAAGAAAGGAAACAGAAAGAAGTAAATGCTAATAGATATCAAAAGAAGACTGATTTCAAAGATAGAAGAGAATCTAAAATTGACATTGAAAGAGAACAGGAATGTGGAGTTTGCTTGGAGGTGAAAGCAAAAGTTGTGCTACCTAATTGTTGCCACCAAATGTGTTTCAAGTGTTACAGAGAATGGTGTCTTAGGTCTCAATCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAACTCTGGTGACCTTTGGATTTACACAGACACAAGTGACATTGTTGATGTTGGGACAATTTCCAAAGAGAATTGTAAGATTCTGTTTCTTTACATAGAAAAGTTGCCTCTTATTATTCCAGACCCAAGACATGTGTCCTATGATCCATTTTTTAGGTAA
Protein sequence

>MsG0380014767.01.T01

MHTQISVRIFLGMGKSLFQESLKALEADIQYANTLALGHPRDKEGGCFQMRLSYSPVAPLFLSLVQWTDYRLAGALGLLRILIYVTYGNGKTTISIYERKASIRQFYCKFKVVNKNVLLSWFVLPIAHSAIIFPALLQLQKGVTDLEERKQKEVNANRYQKKTDFKDRRESKIDIEREQECGVCLEVKAKVVLPNCCHQMCFKCYREWCLRSQSCPFCRDSLKRVNSGDLWIYTDTSDIVDVGTISKENCKILFLYIEKLPLIIPDPRHVSYDPFFR*