Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028170.01.T01 | PNX72657.1 | 90.476 | 42 | 4 | 0 | 28 | 69 | 143 | 184 | 7.52E-17 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028170.01.T01 | P34801 | 69.048 | 42 | 13 | 0 | 28 | 69 | 202 | 243 | 5.77E-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047925.01 | MsG0580028170.01 | 0.805375 | 1.375867e-49 | 7.267382e-47 |
| MsG0080048431.01 | MsG0580028170.01 | 0.800026 | 1.747748e-48 | 8.053350e-46 |
| MsG0080048874.01 | MsG0580028170.01 | 0.830661 | 2.590405e-55 | 2.747073e-52 |
| MsG0180000470.01 | MsG0580028170.01 | 0.804853 | 1.769196e-49 | 9.220964e-47 |
| MsG0180002233.01 | MsG0580028170.01 | 0.806736 | 7.115726e-50 | 3.891864e-47 |
| MsG0180002234.01 | MsG0580028170.01 | 0.835782 | 1.373083e-56 | 1.696465e-53 |
| MsG0180002518.01 | MsG0580028170.01 | 0.824224 | 9.063321e-54 | 7.979009e-51 |
| MsG0180004264.01 | MsG0580028170.01 | 0.803956 | 2.721061e-49 | 1.385788e-46 |
| MsG0180004275.01 | MsG0580028170.01 | 0.805010 | 1.640935e-49 | 8.586367e-47 |
| MsG0180004847.01 | MsG0580028170.01 | 0.801391 | 9.207228e-49 | 4.391730e-46 |
| MsG0180005705.01 | MsG0580028170.01 | 0.800927 | 1.145624e-48 | 5.401082e-46 |
| MsG0180006134.01 | MsG0580028170.01 | 0.806405 | 8.359101e-50 | 4.533157e-47 |
| MsG0280006325.01 | MsG0580028170.01 | 0.816567 | 5.174383e-52 | 3.679401e-49 |
| MsG0380011550.01 | MsG0580028170.01 | 0.800717 | 1.264421e-48 | 5.929088e-46 |
| MsG0380011568.01 | MsG0580028170.01 | 0.801723 | 7.870716e-49 | 3.785782e-46 |
| MsG0380012009.01 | MsG0580028170.01 | 0.808946 | 2.412540e-50 | 1.397910e-47 |
| MsG0380012330.01 | MsG0580028170.01 | 0.810655 | 1.034577e-50 | 6.272616e-48 |
| MsG0380013883.01 | MsG0580028170.01 | 0.805910 | 1.062721e-49 | 5.690977e-47 |
| MsG0480018664.01 | MsG0580028170.01 | 0.827986 | 1.155492e-54 | 1.133535e-51 |
| MsG0480021276.01 | MsG0580028170.01 | 0.814981 | 1.168000e-51 | 7.952782e-49 |
| MsG0480021587.01 | MsG0580028170.01 | 0.834701 | 2.574765e-56 | 3.079227e-53 |
| MsG0380014977.01 | MsG0580028170.01 | 0.809320 | 2.005312e-50 | 1.173707e-47 |
| MsG0380015720.01 | MsG0580028170.01 | 0.800418 | 1.454802e-48 | 6.770745e-46 |
| MsG0380017312.01 | MsG0580028170.01 | 0.809836 | 1.554062e-50 | 9.221244e-48 |
| MsG0380017820.01 | MsG0580028170.01 | 0.808479 | 3.035502e-50 | 1.737531e-47 |
| MsG0380017821.01 | MsG0580028170.01 | 0.803512 | 3.364356e-49 | 1.693970e-46 |
| MsG0380017822.01 | MsG0580028170.01 | 0.802679 | 5.004467e-49 | 2.466471e-46 |
| MsG0380017855.01 | MsG0580028170.01 | 0.808558 | 2.919775e-50 | 1.674675e-47 |
| MsG0480018121.01 | MsG0580028170.01 | 0.812624 | 3.861292e-51 | 2.467119e-48 |
| MsG0580026222.01 | MsG0580028170.01 | 0.825670 | 4.129430e-54 | 3.788989e-51 |
| MsG0580026434.01 | MsG0580028170.01 | 0.815103 | 1.097124e-51 | 7.494555e-49 |
| MsG0580026613.01 | MsG0580028170.01 | 0.800018 | 1.754778e-48 | 8.083956e-46 |
| MsG0580026631.01 | MsG0580028170.01 | 0.804732 | 1.875960e-49 | 9.746897e-47 |
| MsG0580027018.01 | MsG0580028170.01 | 0.801019 | 1.096893e-48 | 5.183639e-46 |
| MsG0580028169.01 | MsG0580028170.01 | 0.962687 | 3.554810e-121 | 1.806172e-115 |
| MsG0580028170.01 | MsG0580028171.01 | 0.897557 | 1.253044e-76 | 1.423552e-72 |
| MsG0580028170.01 | MsG0580028173.01 | 0.824732 | 6.881455e-54 | 6.147771e-51 |
| MsG0580028170.01 | MsG0580028692.01 | 0.807234 | 5.584933e-50 | 3.094226e-47 |
| MsG0580028170.01 | MsG0580029381.01 | 0.831837 | 1.330871e-55 | 1.461593e-52 |
| MsG0580028170.01 | MsG0580030168.01 | 0.800889 | 1.166103e-48 | 5.492470e-46 |
| MsG0580028170.01 | MsG0680031380.01 | 0.803704 | 3.070433e-49 | 1.553488e-46 |
| MsG0580028170.01 | MsG0680032157.01 | 0.807749 | 4.340667e-50 | 2.437385e-47 |
| MsG0580028170.01 | MsG0680032158.01 | 0.825255 | 5.179824e-54 | 4.696867e-51 |
| MsG0580028170.01 | MsG0680032801.01 | 0.805756 | 1.144749e-49 | 6.106405e-47 |
| MsG0580028170.01 | MsG0680033466.01 | 0.804624 | 1.975761e-49 | 1.023565e-46 |
| MsG0580028170.01 | MsG0680033647.01 | 0.815739 | 7.923291e-52 | 5.508349e-49 |
| MsG0580028170.01 | MsG0680034565.01 | 0.805231 | 1.475281e-49 | 7.763477e-47 |
| MsG0580028170.01 | MsG0680035115.01 | 0.802053 | 6.732071e-49 | 3.265542e-46 |
| MsG0580028170.01 | MsG0780036080.01 | 0.813205 | 2.879565e-51 | 1.868499e-48 |
| MsG0580028170.01 | MsG0780036201.01 | 0.825517 | 4.489968e-54 | 4.101707e-51 |
| MsG0580028170.01 | MsG0780036612.01 | 0.809051 | 2.290638e-50 | 1.331061e-47 |
| MsG0580028170.01 | MsG0780037606.01 | 0.827417 | 1.583046e-54 | 1.527437e-51 |
| MsG0580028170.01 | MsG0780039252.01 | 0.803834 | 2.885514e-49 | 1.464892e-46 |
| MsG0580028170.01 | MsG0780039282.01 | 0.807120 | 5.903627e-50 | 3.261009e-47 |
| MsG0580028170.01 | MsG0880044644.01 | 0.829563 | 4.799250e-55 | 4.929662e-52 |
| MsG0280006551.01 | MsG0580028170.01 | 0.817750 | 2.804486e-52 | 2.060042e-49 |
| MsG0280009248.01 | MsG0580028170.01 | 0.803951 | 2.728308e-49 | 1.389314e-46 |
| MsG0280009986.01 | MsG0580028170.01 | 0.805915 | 1.059863e-49 | 5.676532e-47 |
| MsG0280010117.01 | MsG0580028170.01 | 0.834917 | 2.271379e-56 | 2.734506e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028170.01.T01 | MTR_5g088980 | 88.095 | 42 | 5 | 0 | 28 | 69 | 178 | 219 | 3.26e-20 | 89.0 |
| MsG0580028170.01.T01 | MTR_3g050860 | 76.923 | 52 | 12 | 0 | 98 | 149 | 187 | 238 | 1.50e-15 | 75.1 |
| MsG0580028170.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 121 | 211 | 2.88e-14 | 72.0 |
| MsG0580028170.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 121 | 211 | 3.02e-14 | 72.0 |
| MsG0580028170.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 156 | 246 | 3.49e-14 | 72.0 |
| MsG0580028170.01.T01 | MTR_4g074930 | 62.366 | 93 | 30 | 3 | 97 | 186 | 121 | 211 | 4.88e-12 | 65.5 |
| MsG0580028170.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 156 | 246 | 3.68e-14 | 71.6 |
| MsG0580028170.01.T01 | MTR_4g074930 | 62.366 | 93 | 30 | 3 | 97 | 186 | 121 | 211 | 4.87e-12 | 65.5 |
| MsG0580028170.01.T01 | MTR_5g029260 | 71.739 | 46 | 13 | 0 | 193 | 238 | 69 | 114 | 4.62e-12 | 64.7 |
| MsG0580028170.01.T01 | MTR_7g089080 | 64.286 | 42 | 15 | 0 | 28 | 69 | 212 | 253 | 2.42e-11 | 63.5 |
| MsG0580028170.01.T01 | MTR_1g067150 | 78.788 | 33 | 7 | 0 | 69 | 101 | 79 | 111 | 4.69e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028170.01.T01 | AT2G26760 | 71.053 | 38 | 11 | 0 | 32 | 69 | 147 | 184 | 1.13e-12 | 67.0 |
Find 46 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGTAAATGCTAACTTTA+AGG | 0.110035 | 5:-76096571 | MsG0580028170.01.T01:CDS |
| TTCTACAATGGCAGGGTATT+GGG | 0.296126 | 5:-76096615 | MsG0580028170.01.T01:CDS |
| CTCATCTTAGCATTTATATC+TGG | 0.296448 | 5:+76096699 | None:intergenic |
| GAAGTATCAGCTTTCTTTGC+CGG | 0.302508 | 5:+76096340 | None:intergenic |
| TTTCTACAATGGCAGGGTAT+TGG | 0.338064 | 5:-76096616 | MsG0580028170.01.T01:CDS |
| GCACTATCAGCTTTCTTTGC+GGG | 0.352953 | 5:+76096122 | None:intergenic |
| TATGTAAATGCTAACTTTAA+GGG | 0.364959 | 5:-76096570 | MsG0580028170.01.T01:CDS |
| AGAAGCCATACTGCTGCCTT+TGG | 0.370792 | 5:+76096963 | None:intergenic |
| TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5:-76095435 | MsG0580028170.01.T01:CDS |
| TGATATGTAGATTGTAGTCT+TGG | 0.387607 | 5:-76095454 | MsG0580028170.01.T01:intron |
| TCATTTGAAGCTTTCTTTGT+GGG | 0.390405 | 5:+76095893 | None:intergenic |
| TAGAAATCATAAGCTTAAAC+AGG | 0.401284 | 5:-76095377 | MsG0580028170.01.T01:CDS |
| TTCATTTGAAGCTTTCTTTG+TGG | 0.401537 | 5:+76095892 | None:intergenic |
| GTTCTACTTACTCAGATTCA+TGG | 0.416229 | 5:-76095250 | MsG0580028170.01.T01:CDS |
| GCTTATGATTTCTATGCCCT+TGG | 0.419174 | 5:+76095386 | None:intergenic |
| CGGAAAATTTCTACAATGGC+AGG | 0.420430 | 5:-76096623 | MsG0580028170.01.T01:CDS |
| GGCTCAGAAACTTGCAGCAA+AGG | 0.449435 | 5:-76095936 | MsG0580028170.01.T01:intron |
| ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5:-76095444 | MsG0580028170.01.T01:CDS |
| CTCTTCCAAAGGCAGCAGTA+TGG | 0.458219 | 5:-76096968 | MsG0580028170.01.T01:CDS |
| AAAGGCAGCAGTATGGCTTC+TGG | 0.465155 | 5:-76096961 | MsG0580028170.01.T01:CDS |
| GATGGAACAACTTTAGCTGC+AGG | 0.471970 | 5:+76096379 | None:intergenic |
| ATGAGATCAATTCTTATTGA+CGG | 0.472397 | 5:-76096681 | MsG0580028170.01.T01:CDS |
| TTACTTACATTGGGAAACAT+AGG | 0.475384 | 5:+76096543 | None:intergenic |
| TGAGATCAATTCTTATTGAC+GGG | 0.486231 | 5:-76096680 | MsG0580028170.01.T01:CDS |
| TAGGAAATTTGAACTTATGC+CGG | 0.494203 | 5:-76096643 | MsG0580028170.01.T01:CDS |
| GATATGTAGATTGTAGTCTT+GGG | 0.505411 | 5:-76095453 | MsG0580028170.01.T01:intron |
| TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5:-76095443 | MsG0580028170.01.T01:CDS |
| GAGCCATTGTATTGTTCTTG+AGG | 0.531342 | 5:+76096988 | None:intergenic |
| AGCACTATCAGCTTTCTTTG+CGG | 0.535090 | 5:+76096121 | None:intergenic |
| TGTTCGTGTGCATGATTACA+TGG | 0.536076 | 5:-76096730 | MsG0580028170.01.T01:CDS |
| CTCAGATTCATGGATAGTGT+TGG | 0.544028 | 5:-76095240 | MsG0580028170.01.T01:CDS |
| TGTTGGTTCTGCTATATGCA+AGG | 0.547176 | 5:-76095418 | MsG0580028170.01.T01:CDS |
| ATCTTCTAACGAAGAAGATA+AGG | 0.547986 | 5:-76096069 | MsG0580028170.01.T01:intron |
| ATGCAAGGCAGCAGTATCCA+AGG | 0.548782 | 5:-76095403 | MsG0580028170.01.T01:CDS |
| TGATTTACAACTAAATGAAG+TGG | 0.551226 | 5:+76096925 | None:intergenic |
| CAATACAATGGCTCTTCCAA+AGG | 0.576376 | 5:-76096979 | MsG0580028170.01.T01:CDS |
| ATGCCGGAAAATTTCTACAA+TGG | 0.584945 | 5:-76096627 | MsG0580028170.01.T01:CDS |
| GGATAGTGTTGGTACTACAT+AGG | 0.596128 | 5:-76095229 | None:intergenic |
| ACGGGTTGATCGAAGTGCAT+AGG | 0.604673 | 5:-76096662 | MsG0580028170.01.T01:CDS |
| AGATTCATCAGAGTCGTCAT+CGG | 0.622764 | 5:+76096088 | None:intergenic |
| ATGTAGATTGTAGTCTTGGG+AGG | 0.624281 | 5:-76095450 | MsG0580028170.01.T01:intron |
| GGAAAATTTCTACAATGGCA+GGG | 0.630591 | 5:-76096622 | MsG0580028170.01.T01:CDS |
| TGAATCTTCTGATGAAGATG+AGG | 0.644258 | 5:-76096302 | MsG0580028170.01.T01:intron |
| ACTAAATGAAGTGGACTCTG+TGG | 0.651058 | 5:+76096934 | None:intergenic |
| TGCAAGGCAGCAGTATCCAA+GGG | 0.655279 | 5:-76095402 | MsG0580028170.01.T01:CDS |
| ATGCCTCAAGAACAATACAA+TGG | 0.701209 | 5:-76096991 | MsG0580028170.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAATGATATAAAATTA+AGG | + | Chr5:76095983-76096002 | None:intergenic | 10.0% |
| !! | ATACAATGATATAAAATTAA+GGG | + | Chr5:76095982-76096001 | None:intergenic | 10.0% |
| !! | TAATAAACAAAAAAAAAGTT+GGG | + | Chr5:76095777-76095796 | None:intergenic | 10.0% |
| !! | TTAATAAACAAAAAAAAAGT+TGG | + | Chr5:76095778-76095797 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTTTTTTTTTCA+TGG | - | Chr5:76096029-76096048 | MsG0580028170.01.T01:intron | 10.0% |
| !!! | CTTTATTTTGTTTTTTAAAA+TGG | - | Chr5:76096238-76096257 | MsG0580028170.01.T01:intron | 10.0% |
| !!! | TTAATATATATTTTTTCCTT+TGG | - | Chr5:76096264-76096283 | MsG0580028170.01.T01:intron | 10.0% |
| !! | TATATAGTGAATTAATTGAT+AGG | - | Chr5:76096630-76096649 | MsG0580028170.01.T01:CDS | 15.0% |
| !!! | ATGTTTTAGCTATAAATTAA+AGG | + | Chr5:76095748-76095767 | None:intergenic | 15.0% |
| !! | AGAATAAAAGGATAATGAAT+TGG | - | Chr5:76095320-76095339 | MsG0580028170.01.T01:intron | 20.0% |
| !! | ATATGTAAATGCTAACTTTA+AGG | - | Chr5:76095650-76095669 | MsG0580028170.01.T01:intron | 20.0% |
| !! | ATGTAATCAAATCATATGAA+AGG | + | Chr5:76096380-76096399 | None:intergenic | 20.0% |
| !! | CAATTCTAATTACTTACATT+GGG | + | Chr5:76095690-76095709 | None:intergenic | 20.0% |
| !! | GTTGTAAATCATAGAATAAA+AGG | - | Chr5:76095308-76095327 | MsG0580028170.01.T01:intron | 20.0% |
| !! | TATGTAAATGCTAACTTTAA+GGG | - | Chr5:76095651-76095670 | MsG0580028170.01.T01:intron | 20.0% |
| !! | TGTATTTACAACTATTTGTT+TGG | - | Chr5:76095997-76096016 | MsG0580028170.01.T01:intron | 20.0% |
| !! | TTTAAATATTACTGTTCTTG+TGG | + | Chr5:76096407-76096426 | None:intergenic | 20.0% |
| ! | AAAGTTGTTCCATCTAAAAA+TGG | - | Chr5:76095851-76095870 | MsG0580028170.01.T01:intron | 25.0% |
| ! | AAGTTGTTCCATCTAAAAAT+GGG | - | Chr5:76095852-76095871 | MsG0580028170.01.T01:intron | 25.0% |
| ! | ATGAGATCAATTCTTATTGA+CGG | - | Chr5:76095540-76095559 | MsG0580028170.01.T01:intron | 25.0% |
| ! | CAAATACACAAAAACAAAAG+AGG | + | Chr5:76096923-76096942 | None:intergenic | 25.0% |
| ! | GCAATTCTAATTACTTACAT+TGG | + | Chr5:76095691-76095710 | None:intergenic | 25.0% |
| ! | GTGTTACAATTTAGTTAGTA+AGG | + | Chr5:76096733-76096752 | None:intergenic | 25.0% |
| ! | TAGAAATCATAAGCTTAAAC+AGG | - | Chr5:76096844-76096863 | MsG0580028170.01.T01:intron | 25.0% |
| ! | TGATTTACAACTAAATGAAG+TGG | + | Chr5:76095299-76095318 | None:intergenic | 25.0% |
| !!! | AATTAAAGGTATCATGATGA+TGG | + | Chr5:76095734-76095753 | None:intergenic | 25.0% |
| !!! | ACTCACTTACATGTTTTTTA+TGG | - | Chr5:76095811-76095830 | MsG0580028170.01.T01:intron | 25.0% |
| !!! | TATGCTACCTTTCTTTTTTT+TGG | - | Chr5:76096436-76096455 | MsG0580028170.01.T01:intron | 25.0% |
| AAAGTTGTTCCTTCCAAAAA+TGG | - | Chr5:76096069-76096088 | MsG0580028170.01.T01:intron | 30.0% | |
| AACATGTAAGTGAGTTATAG+AGG | + | Chr5:76095806-76095825 | None:intergenic | 30.0% | |
| AAGTTGTTCCTTCCAAAAAT+GGG | - | Chr5:76096070-76096089 | MsG0580028170.01.T01:CDS | 30.0% | |
| ACATGTAAGTGAGTTATAGA+GGG | + | Chr5:76095805-76095824 | None:intergenic | 30.0% | |
| ATCTTCTAACGAAGAAGATA+AGG | - | Chr5:76096152-76096171 | MsG0580028170.01.T01:CDS | 30.0% | |
| CATAAAATATGCAAGGTTCA+GGG | + | Chr5:76096480-76096499 | None:intergenic | 30.0% | |
| CTCATCTTAGCATTTATATC+TGG | + | Chr5:76095525-76095544 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | Chr5:76096487-76096506 | None:intergenic | 30.0% | |
| GATATGTAGATTGTAGTCTT+GGG | - | Chr5:76096768-76096787 | MsG0580028170.01.T01:intron | 30.0% | |
| TAACGAAGAAGATAAGGTAT+TGG | - | Chr5:76096158-76096177 | MsG0580028170.01.T01:CDS | 30.0% | |
| TAGGAAATTTGAACTTATGC+CGG | - | Chr5:76095578-76095597 | MsG0580028170.01.T01:intron | 30.0% | |
| TGAGATCAATTCTTATTGAC+GGG | - | Chr5:76095541-76095560 | MsG0580028170.01.T01:intron | 30.0% | |
| TGATATGTAGATTGTAGTCT+TGG | - | Chr5:76096767-76096786 | MsG0580028170.01.T01:intron | 30.0% | |
| TTACTTACATTGGGAAACAT+AGG | + | Chr5:76095681-76095700 | None:intergenic | 30.0% | |
| ! | TCATTTGAAGCTTTCTTTGT+GGG | + | Chr5:76096331-76096350 | None:intergenic | 30.0% |
| ! | TTCATTTGAAGCTTTCTTTG+TGG | + | Chr5:76096332-76096351 | None:intergenic | 30.0% |
| !! | TGACTGAGATTTTGTTTAAC+AGG | - | Chr5:76096941-76096960 | MsG0580028170.01.T01:CDS | 30.0% |
| !!! | ACCTTTCTTTTTTTTGGTAG+TGG | - | Chr5:76096442-76096461 | MsG0580028170.01.T01:intron | 30.0% |
| ACACAAAAACAAAAGAGGTG+TGG | + | Chr5:76096918-76096937 | None:intergenic | 35.0% | |
| ATGCCGGAAAATTTCTACAA+TGG | - | Chr5:76095594-76095613 | MsG0580028170.01.T01:intron | 35.0% | |
| ATGCCTCAAGAACAATACAA+TGG | - | Chr5:76095230-76095249 | MsG0580028170.01.T01:CDS | 35.0% | |
| CTTCTAACCTTCTAGTAGAA+AGG | + | Chr5:76096547-76096566 | None:intergenic | 35.0% | |
| GCATAAAATATGCAAGGTTC+AGG | + | Chr5:76096481-76096500 | None:intergenic | 35.0% | |
| GCCACTACCAAAAAAAAGAA+AGG | + | Chr5:76096446-76096465 | None:intergenic | 35.0% | |
| GGAAAATTTCTACAATGGCA+GGG | - | Chr5:76095599-76095618 | MsG0580028170.01.T01:intron | 35.0% | |
| GTTCTACTTACTCAGATTCA+TGG | - | Chr5:76096971-76096990 | MsG0580028170.01.T01:CDS | 35.0% | |
| TATGCTACCTTTCTACTAGA+AGG | - | Chr5:76096537-76096556 | MsG0580028170.01.T01:intron | 35.0% | |
| TGAATCTTCTGATGAAGATG+AGG | - | Chr5:76095919-76095938 | MsG0580028170.01.T01:CDS | 35.0% | |
| ! | CTGCCATTGTAGAAATTTTC+CGG | + | Chr5:76095600-76095619 | None:intergenic | 35.0% |
| !! | GAGATTTTGTTTAACAGGTC+AGG | - | Chr5:76096946-76096965 | MsG0580028170.01.T01:CDS | 35.0% |
| !!! | TTCTTTTTTTTGGTAGTGGC+CGG | - | Chr5:76096446-76096465 | MsG0580028170.01.T01:intron | 35.0% |
| AGATTCATCAGAGTCGTCAT+CGG | + | Chr5:76096136-76096155 | None:intergenic | 40.0% | |
| AGCACTATCAGCTTTCTTTG+CGG | + | Chr5:76096103-76096122 | None:intergenic | 40.0% | |
| CAATACAATGGCTCTTCCAA+AGG | - | Chr5:76095242-76095261 | MsG0580028170.01.T01:CDS | 40.0% | |
| CGGAAAATTTCTACAATGGC+AGG | - | Chr5:76095598-76095617 | MsG0580028170.01.T01:intron | 40.0% | |
| CTCAGATTCATGGATAGTGT+TGG | - | Chr5:76096981-76097000 | MsG0580028170.01.T01:CDS | 40.0% | |
| GAGCCATTGTATTGTTCTTG+AGG | + | Chr5:76095236-76095255 | None:intergenic | 40.0% | |
| GCTTATGATTTCTATGCCCT+TGG | + | Chr5:76096838-76096857 | None:intergenic | 40.0% | |
| TGTTCGTGTGCATGATTACA+TGG | - | Chr5:76095491-76095510 | MsG0580028170.01.T01:intron | 40.0% | |
| TTTCTACAATGGCAGGGTAT+TGG | - | Chr5:76095605-76095624 | MsG0580028170.01.T01:intron | 40.0% | |
| ! | ACTAAATGAAGTGGACTCTG+TGG | + | Chr5:76095290-76095309 | None:intergenic | 40.0% |
| ! | ATCTAAAAATGGGAGTGCAC+CGG | - | Chr5:76095862-76095881 | MsG0580028170.01.T01:intron | 40.0% |
| ! | ATGTAGATTGTAGTCTTGGG+AGG | - | Chr5:76096771-76096790 | MsG0580028170.01.T01:intron | 40.0% |
| ! | CAGCAAAGGCCTCTAAAAAT+GGG | - | Chr5:76096299-76096318 | MsG0580028170.01.T01:intron | 40.0% |
| ! | GAAGTATCAGCTTTCTTTGC+CGG | + | Chr5:76095884-76095903 | None:intergenic | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTT+GGG | + | Chr5:76096509-76096528 | None:intergenic | 40.0% |
| ! | TTCTACAATGGCAGGGTATT+GGG | - | Chr5:76095606-76095625 | MsG0580028170.01.T01:intron | 40.0% |
| !! | TGTTGGTTCTGCTATATGCA+AGG | - | Chr5:76096803-76096822 | MsG0580028170.01.T01:intron | 40.0% |
| !!! | TCTTTTTTTTGGTAGTGGCC+GGG | - | Chr5:76096447-76096466 | MsG0580028170.01.T01:intron | 40.0% |
| GATGGAACAACTTTAGCTGC+AGG | + | Chr5:76095845-76095864 | None:intergenic | 45.0% | |
| GCACTATCAGCTTTCTTTGC+GGG | + | Chr5:76096102-76096121 | None:intergenic | 45.0% | |
| ! | ATTGTAGTCTTGGGAGGCAA+TGG | - | Chr5:76096777-76096796 | MsG0580028170.01.T01:intron | 45.0% |
| ! | GAAGGAACAACTTTTGCTGC+AGG | + | Chr5:76096063-76096082 | None:intergenic | 45.0% |
| ! | GCAGCAAAGGCCTCTAAAAA+TGG | - | Chr5:76096298-76096317 | MsG0580028170.01.T01:intron | 45.0% |
| ! | GTGAGTTTAGCTCAGTTGGT+TGG | + | Chr5:76096510-76096529 | None:intergenic | 45.0% |
| ! | TTGTAGTCTTGGGAGGCAAT+GGG | - | Chr5:76096778-76096797 | MsG0580028170.01.T01:intron | 45.0% |
| !! | GGTACACTCCCATTTTTGGA+AGG | + | Chr5:76096081-76096100 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+TGG | + | Chr5:76095863-76095882 | None:intergenic | 45.0% |
| !!! | CTTTTTTTTGGTAGTGGCCG+GGG | - | Chr5:76096448-76096467 | MsG0580028170.01.T01:intron | 45.0% |
| AAAGGCAGCAGTATGGCTTC+TGG | - | Chr5:76095260-76095279 | MsG0580028170.01.T01:CDS | 50.0% | |
| AAGGTTCAGGGTTCAAACCC+CGG | + | Chr5:76096468-76096487 | None:intergenic | 50.0% | |
| AGAAGCCATACTGCTGCCTT+TGG | + | Chr5:76095261-76095280 | None:intergenic | 50.0% | |
| AGGTGTGGAAGAGATGAGAC+GGG | + | Chr5:76096903-76096922 | None:intergenic | 50.0% | |
| ATGCAAGGCAGCAGTATCCA+AGG | - | Chr5:76096818-76096837 | MsG0580028170.01.T01:intron | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | - | Chr5:76096511-76096530 | MsG0580028170.01.T01:intron | 50.0% | |
| CTCTTCCAAAGGCAGCAGTA+TGG | - | Chr5:76095253-76095272 | MsG0580028170.01.T01:CDS | 50.0% | |
| GAGGTGTGGAAGAGATGAGA+CGG | + | Chr5:76096904-76096923 | None:intergenic | 50.0% | |
| GCTGCAAGTTTCTGAGCCAA+AGG | + | Chr5:76096283-76096302 | None:intergenic | 50.0% | |
| GGCTCAGAAACTTGCAGCAA+AGG | - | Chr5:76096285-76096304 | MsG0580028170.01.T01:intron | 50.0% | |
| TGCAAGGCAGCAGTATCCAA+GGG | - | Chr5:76096819-76096838 | MsG0580028170.01.T01:intron | 50.0% | |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | + | Chr5:76096514-76096533 | None:intergenic | 50.0% |
| ! | TGCGGGTACACTCCCATTTT+TGG | + | Chr5:76096085-76096104 | None:intergenic | 50.0% |
| ! | TTGGGAGGCAATGGGTTTGT+TGG | - | Chr5:76096786-76096805 | MsG0580028170.01.T01:intron | 50.0% |
| !! | ACGGGTTGATCGAAGTGCAT+AGG | - | Chr5:76095559-76095578 | MsG0580028170.01.T01:intron | 50.0% |
| !! | GGGTGCACTCCCATTTTTAG+AGG | + | Chr5:76096311-76096330 | None:intergenic | 50.0% |
| GGTGTGGAAGAGATGAGACG+GGG | + | Chr5:76096902-76096921 | None:intergenic | 55.0% | |
| GTGTGGAAGAGATGAGACGG+GGG | + | Chr5:76096901-76096920 | None:intergenic | 55.0% | |
| ! | AGAGATGAGACGGGGGTATG+TGG | + | Chr5:76096894-76096913 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 76095230 | 76097013 | 76095230 | ID=MsG0580028170.01;Name=MsG0580028170.01 |
| Chr5 | mRNA | 76095230 | 76097013 | 76095230 | ID=MsG0580028170.01.T01;Parent=MsG0580028170.01;Name=MsG0580028170.01.T01;_AED=0.50;_eAED=0.94;_QI=0|0|0|1|0.66|0.57|7|0|241 |
| Chr5 | exon | 76096933 | 76097013 | 76096933 | ID=MsG0580028170.01.T01:exon:15470;Parent=MsG0580028170.01.T01 |
| Chr5 | exon | 76096551 | 76096757 | 76096551 | ID=MsG0580028170.01.T01:exon:15469;Parent=MsG0580028170.01.T01 |
| Chr5 | exon | 76096303 | 76096404 | 76096303 | ID=MsG0580028170.01.T01:exon:15468;Parent=MsG0580028170.01.T01 |
| Chr5 | exon | 76096070 | 76096186 | 76096070 | ID=MsG0580028170.01.T01:exon:15467;Parent=MsG0580028170.01.T01 |
| Chr5 | exon | 76095877 | 76095951 | 76095877 | ID=MsG0580028170.01.T01:exon:15466;Parent=MsG0580028170.01.T01 |
| Chr5 | exon | 76095374 | 76095466 | 76095374 | ID=MsG0580028170.01.T01:exon:15465;Parent=MsG0580028170.01.T01 |
| Chr5 | exon | 76095230 | 76095280 | 76095230 | ID=MsG0580028170.01.T01:exon:15464;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76096933 | 76097013 | 76096933 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76096551 | 76096757 | 76096551 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76096303 | 76096404 | 76096303 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76096070 | 76096186 | 76096070 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76095877 | 76095951 | 76095877 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76095374 | 76095466 | 76095374 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Chr5 | CDS | 76095230 | 76095280 | 76095230 | ID=MsG0580028170.01.T01:cds;Parent=MsG0580028170.01.T01 |
| Gene Sequence |
| Protein sequence |
