Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028171.01.T01 | PNX72657.1 | 90.476 | 42 | 4 | 0 | 28 | 69 | 143 | 184 | 1.64E-16 | 89.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028171.01.T01 | P34800 | 66.667 | 42 | 14 | 0 | 28 | 69 | 207 | 248 | 8.51E-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028171.01.T01 | A0A2K3L284 | 90.476 | 42 | 4 | 0 | 28 | 69 | 143 | 184 | 7.82e-17 | 89.4 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001410.01 | MsG0580028171.01 | 0.804256 | 2.357281e-49 | 1.209688e-46 |
MsG0180002234.01 | MsG0580028171.01 | 0.806219 | 9.150048e-50 | 4.938879e-47 |
MsG0180002518.01 | MsG0580028171.01 | 0.817717 | 2.853054e-52 | 2.093693e-49 |
MsG0380011550.01 | MsG0580028171.01 | 0.807429 | 5.076191e-50 | 2.826744e-47 |
MsG0480021587.01 | MsG0580028171.01 | 0.818273 | 2.135986e-52 | 1.591526e-49 |
MsG0380017220.01 | MsG0580028171.01 | 0.823714 | 1.194029e-53 | 1.036301e-50 |
MsG0580028169.01 | MsG0580028171.01 | 0.932679 | 5.924076e-95 | 4.025496e-90 |
MsG0580028170.01 | MsG0580028171.01 | 0.897557 | 1.253044e-76 | 1.423552e-72 |
MsG0580028171.01 | MsG0580028173.01 | 0.874831 | 4.964333e-68 | 2.268071e-64 |
MsG0580028171.01 | MsG0680032157.01 | 0.800274 | 1.556647e-48 | 7.217957e-46 |
MsG0580028171.01 | MsG0680032158.01 | 0.801894 | 7.259136e-49 | 3.507095e-46 |
MsG0580028171.01 | MsG0780036201.01 | 0.801578 | 8.428476e-49 | 4.039332e-46 |
MsG0580028171.01 | MsG0880044644.01 | 0.803658 | 3.138023e-49 | 1.585825e-46 |
MsG0580028171.01 | MsG0880046772.01 | 0.815808 | 7.646789e-52 | 5.325887e-49 |
MsG0280006551.01 | MsG0580028171.01 | 0.802424 | 5.647568e-49 | 2.765602e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028171.01.T01 | MTR_5g088980 | 88.095 | 42 | 5 | 0 | 28 | 69 | 178 | 219 | 8.47e-20 | 87.8 |
MsG0580028171.01.T01 | MTR_5g029260 | 71.739 | 46 | 13 | 0 | 195 | 240 | 69 | 114 | 4.96e-12 | 64.7 |
MsG0580028171.01.T01 | MTR_7g089080 | 64.286 | 42 | 15 | 0 | 28 | 69 | 212 | 253 | 3.13e-11 | 63.5 |
MsG0580028171.01.T01 | MTR_1g067150 | 78.788 | 33 | 7 | 0 | 69 | 101 | 79 | 111 | 5.00e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580028171.01.T01 | AT2G26760 | 71.053 | 38 | 11 | 0 | 32 | 69 | 147 | 184 | 2.01e-12 | 66.2 |
Find 46 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATGTAAATGCTAACTTTA+AGG | 0.110035 | 5:-76121179 | MsG0580028171.01.T01:CDS |
TTCTACAATGGCAGGGTATT+GGG | 0.296126 | 5:-76121223 | MsG0580028171.01.T01:CDS |
CTCATCTTAGCATTTATATC+TGG | 0.296448 | 5:+76121307 | None:intergenic |
GAAGTATCAGCTTTCTTTGC+CGG | 0.302508 | 5:+76120947 | None:intergenic |
TTTCTACAATGGCAGGGTAT+TGG | 0.338064 | 5:-76121224 | MsG0580028171.01.T01:CDS |
GCACTATCAGCTTTCTTTGC+GGG | 0.352953 | 5:+76120727 | None:intergenic |
TATGTAAATGCTAACTTTAA+GGG | 0.364959 | 5:-76121178 | MsG0580028171.01.T01:CDS |
AGAAGCCATACTGCTGCCTT+TGG | 0.370792 | 5:+76121570 | None:intergenic |
TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5:-76120039 | MsG0580028171.01.T01:CDS |
TGATATGTAGATTGTAGTCT+TGG | 0.387607 | 5:-76120058 | MsG0580028171.01.T01:intron |
TCATTTGAAGCTTTCTTTGT+GGG | 0.390405 | 5:+76120497 | None:intergenic |
TAGAAATCATAAGCTTAAAC+AGG | 0.401284 | 5:-76119981 | MsG0580028171.01.T01:CDS |
TTCATTTGAAGCTTTCTTTG+TGG | 0.401537 | 5:+76120496 | None:intergenic |
GTTCTACTTACTCAGATTCA+TGG | 0.416229 | 5:-76119854 | MsG0580028171.01.T01:CDS |
GCTTATGATTTCTATGCCCT+TGG | 0.419174 | 5:+76119990 | None:intergenic |
CGGAAAATTTCTACAATGGC+AGG | 0.420430 | 5:-76121231 | MsG0580028171.01.T01:CDS |
GGCTCAGAAACTTGCAGCAA+AGG | 0.449435 | 5:-76120540 | MsG0580028171.01.T01:intron |
ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5:-76120048 | MsG0580028171.01.T01:CDS |
CTCTTCCAAAGGCAGCAGTA+TGG | 0.458219 | 5:-76121575 | MsG0580028171.01.T01:CDS |
AAAGGCAGCAGTATGGCTTC+TGG | 0.465155 | 5:-76121568 | MsG0580028171.01.T01:CDS |
GATGGAACAACTTTAGCTGC+AGG | 0.471970 | 5:+76120986 | None:intergenic |
ATGAGATCAATTCTTATTGA+CGG | 0.472397 | 5:-76121289 | MsG0580028171.01.T01:CDS |
TTACTTACATTGGGAAACAT+AGG | 0.475384 | 5:+76121151 | None:intergenic |
TGAGATCAATTCTTATTGAC+GGG | 0.486231 | 5:-76121288 | MsG0580028171.01.T01:CDS |
TAGGAAATTTGAACTTATGC+CGG | 0.494203 | 5:-76121251 | MsG0580028171.01.T01:CDS |
GATATGTAGATTGTAGTCTT+GGG | 0.505411 | 5:-76120057 | MsG0580028171.01.T01:intron |
TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5:-76120047 | MsG0580028171.01.T01:CDS |
GAGCCATTGTATTGTTCTTG+AGG | 0.531342 | 5:+76121595 | None:intergenic |
AGCACTATCAGCTTTCTTTG+CGG | 0.535090 | 5:+76120726 | None:intergenic |
TGTTCGTGTGCATGATTACA+TGG | 0.536076 | 5:-76121338 | MsG0580028171.01.T01:CDS |
CTCAGATTCATGGATAGTGT+TGG | 0.544028 | 5:-76119844 | MsG0580028171.01.T01:CDS |
TGTTGGTTCTGCTATATGCA+AGG | 0.547176 | 5:-76120022 | MsG0580028171.01.T01:CDS |
ATCTTCTAACGAAGAAGATA+AGG | 0.547986 | 5:-76120674 | MsG0580028171.01.T01:intron |
ATGCAAGGCAGCAGTATCCA+AGG | 0.548782 | 5:-76120007 | MsG0580028171.01.T01:CDS |
TGATTTACAACTAAATGAAG+TGG | 0.551226 | 5:+76121532 | None:intergenic |
CAATACAATGGCTCTTCCAA+AGG | 0.576376 | 5:-76121586 | MsG0580028171.01.T01:CDS |
ATGCCGGAAAATTTCTACAA+TGG | 0.584945 | 5:-76121235 | MsG0580028171.01.T01:CDS |
GGATAGTGTTGGTACTACAT+AGG | 0.596128 | 5:-76119833 | None:intergenic |
ACGGGTTGATCGAAGTGCAT+AGG | 0.604673 | 5:-76121270 | MsG0580028171.01.T01:CDS |
AGATTCATCAGAGTCGTCAT+CGG | 0.622764 | 5:+76120693 | None:intergenic |
ATGTAGATTGTAGTCTTGGG+AGG | 0.624281 | 5:-76120054 | MsG0580028171.01.T01:intron |
GGAAAATTTCTACAATGGCA+GGG | 0.630591 | 5:-76121230 | MsG0580028171.01.T01:CDS |
TGAATCTTCTGATGAAGATG+AGG | 0.644258 | 5:-76120909 | MsG0580028171.01.T01:CDS |
ACTAAATGAAGTGGACTCTG+TGG | 0.651058 | 5:+76121541 | None:intergenic |
TGCAAGGCAGCAGTATCCAA+GGG | 0.655279 | 5:-76120006 | MsG0580028171.01.T01:CDS |
ATGCCTCAAGAACAATACAA+TGG | 0.701209 | 5:-76121598 | MsG0580028171.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATACAATGATATAAAATTA+AGG | + | Chr5:76120587-76120606 | None:intergenic | 10.0% |
!! | ATACAATGATATAAAATTAA+GGG | + | Chr5:76120586-76120605 | None:intergenic | 10.0% |
!!! | CTTTATTTTGTTTTTTAAAA+TGG | - | Chr5:76120844-76120863 | MsG0580028171.01.T01:intron | 10.0% |
!!! | TAAATATATATTTTTTCCTT+TGG | - | Chr5:76120871-76120890 | MsG0580028171.01.T01:intron | 10.0% |
!!! | TTGTTTTAATTTTTTTTTCA+TGG | - | Chr5:76120636-76120655 | MsG0580028171.01.T01:intron | 10.0% |
!! | AATAAACAAAACAAAAAGTT+GGG | + | Chr5:76120380-76120399 | None:intergenic | 15.0% |
!! | TAATAAACAAAACAAAAAGT+TGG | + | Chr5:76120381-76120400 | None:intergenic | 15.0% |
!! | TATATAGTGAATTAATTGAT+AGG | - | Chr5:76121237-76121256 | MsG0580028171.01.T01:CDS | 15.0% |
!!! | ATGTTTTAGCTATAAATTAA+AGG | + | Chr5:76120351-76120370 | None:intergenic | 15.0% |
!! | AGAATAAAAGGATAATGAAT+TGG | - | Chr5:76119924-76119943 | MsG0580028171.01.T01:intron | 20.0% |
!! | ATATGTAAATGCTAACTTTA+AGG | - | Chr5:76120253-76120272 | MsG0580028171.01.T01:intron | 20.0% |
!! | ATGTAATCAAATCATATGAA+AGG | + | Chr5:76120987-76121006 | None:intergenic | 20.0% |
!! | CAATTCTAATTACTTACATT+GGG | + | Chr5:76120293-76120312 | None:intergenic | 20.0% |
!! | GTTGTAAATCATAGAATAAA+AGG | - | Chr5:76119912-76119931 | MsG0580028171.01.T01:intron | 20.0% |
!! | TATGTAAATGCTAACTTTAA+GGG | - | Chr5:76120254-76120273 | MsG0580028171.01.T01:intron | 20.0% |
!! | TGTATTTACAACTATTTGTT+TGG | - | Chr5:76120601-76120620 | MsG0580028171.01.T01:intron | 20.0% |
!! | TTTAAATATTACTGTTCTTG+TGG | + | Chr5:76121013-76121032 | None:intergenic | 20.0% |
! | AAAGTTGTTCCATCTAAAAA+TGG | - | Chr5:76120455-76120474 | MsG0580028171.01.T01:intron | 25.0% |
! | AAGTTGTTCCATCTAAAAAT+GGG | - | Chr5:76120456-76120475 | MsG0580028171.01.T01:intron | 25.0% |
! | ATGAGATCAATTCTTATTGA+CGG | - | Chr5:76120143-76120162 | MsG0580028171.01.T01:intron | 25.0% |
! | CAAATACACAAAAACAAAAG+AGG | + | Chr5:76121530-76121549 | None:intergenic | 25.0% |
! | GCAATTCTAATTACTTACAT+TGG | + | Chr5:76120294-76120313 | None:intergenic | 25.0% |
! | GTGTTACAATTTAGTTAGTA+AGG | + | Chr5:76121340-76121359 | None:intergenic | 25.0% |
! | TAGAAATCATAAGCTTAAAC+AGG | - | Chr5:76121451-76121470 | MsG0580028171.01.T01:intron | 25.0% |
! | TGATTTACAACTAAATGAAG+TGG | + | Chr5:76119903-76119922 | None:intergenic | 25.0% |
!!! | AATTAAAGGTATCATGATGA+TGG | + | Chr5:76120337-76120356 | None:intergenic | 25.0% |
!!! | ACTCACTTACATGTTTTTTA+TGG | - | Chr5:76120415-76120434 | MsG0580028171.01.T01:intron | 25.0% |
!!! | ATGCTACCTTTCTTTTTTTT+TGG | - | Chr5:76121043-76121062 | MsG0580028171.01.T01:intron | 25.0% |
AAAGTTGTTCCTTCCAAAAA+TGG | - | Chr5:76120676-76120695 | MsG0580028171.01.T01:CDS | 30.0% | |
AACATGTAAGTGAGTTATAG+AGG | + | Chr5:76120410-76120429 | None:intergenic | 30.0% | |
ACATGTAAGTGAGTTATAGA+GGG | + | Chr5:76120409-76120428 | None:intergenic | 30.0% | |
ATCTTCTAACGAAGAAGATA+AGG | - | Chr5:76120758-76120777 | MsG0580028171.01.T01:CDS | 30.0% | |
CATAAAATATGCAAGGTTCA+GGG | + | Chr5:76121087-76121106 | None:intergenic | 30.0% | |
CCACTACCAAAAAAAAAGAA+AGG | + | Chr5:76121052-76121071 | None:intergenic | 30.0% | |
CTCATCTTAGCATTTATATC+TGG | + | Chr5:76120128-76120147 | None:intergenic | 30.0% | |
GACAATGCATAAAATATGCA+AGG | + | Chr5:76121094-76121113 | None:intergenic | 30.0% | |
GATATGTAGATTGTAGTCTT+GGG | - | Chr5:76121375-76121394 | MsG0580028171.01.T01:intron | 30.0% | |
TAACGAAGAAGATAAGGTAT+TGG | - | Chr5:76120764-76120783 | MsG0580028171.01.T01:intron | 30.0% | |
TAGGAAATTTGAACTTATGC+CGG | - | Chr5:76120181-76120200 | MsG0580028171.01.T01:intron | 30.0% | |
TGAGATCAATTCTTATTGAC+GGG | - | Chr5:76120144-76120163 | MsG0580028171.01.T01:intron | 30.0% | |
TGATATGTAGATTGTAGTCT+TGG | - | Chr5:76121374-76121393 | MsG0580028171.01.T01:intron | 30.0% | |
TTACTTACATTGGGAAACAT+AGG | + | Chr5:76120284-76120303 | None:intergenic | 30.0% | |
! | TCATTTGAAGCTTTCTTTGT+GGG | + | Chr5:76120938-76120957 | None:intergenic | 30.0% |
! | TTCATTTGAAGCTTTCTTTG+TGG | + | Chr5:76120939-76120958 | None:intergenic | 30.0% |
!! | TGACTGAGATTTTGTTTAAC+AGG | - | Chr5:76121548-76121567 | MsG0580028171.01.T01:CDS | 30.0% |
!!! | CCTTTCTTTTTTTTTGGTAG+TGG | - | Chr5:76121049-76121068 | MsG0580028171.01.T01:intron | 30.0% |
ACACAAAAACAAAAGAGGTG+TGG | + | Chr5:76121525-76121544 | None:intergenic | 35.0% | |
ATGCCGGAAAATTTCTACAA+TGG | - | Chr5:76120197-76120216 | MsG0580028171.01.T01:intron | 35.0% | |
ATGCCTCAAGAACAATACAA+TGG | - | Chr5:76119834-76119853 | MsG0580028171.01.T01:CDS | 35.0% | |
CTTCTAACCTTCTAGTAGAA+AGG | + | Chr5:76121154-76121173 | None:intergenic | 35.0% | |
GCATAAAATATGCAAGGTTC+AGG | + | Chr5:76121088-76121107 | None:intergenic | 35.0% | |
GGAAAATTTCTACAATGGCA+GGG | - | Chr5:76120202-76120221 | MsG0580028171.01.T01:intron | 35.0% | |
GTTCTACTTACTCAGATTCA+TGG | - | Chr5:76121578-76121597 | MsG0580028171.01.T01:CDS | 35.0% | |
TATGCTACCTTTCTACTAGA+AGG | - | Chr5:76121144-76121163 | MsG0580028171.01.T01:intron | 35.0% | |
TGAATCTTCTGATGAAGATG+AGG | - | Chr5:76120523-76120542 | MsG0580028171.01.T01:CDS | 35.0% | |
! | CTGCCATTGTAGAAATTTTC+CGG | + | Chr5:76120203-76120222 | None:intergenic | 35.0% |
!! | GAGATTTTGTTTAACAGGTC+AGG | - | Chr5:76121553-76121572 | MsG0580028171.01.T01:CDS | 35.0% |
!!! | TCTTTTTTTTTGGTAGTGGC+CGG | - | Chr5:76121053-76121072 | MsG0580028171.01.T01:intron | 35.0% |
AGATTCATCAGAGTCGTCAT+CGG | + | Chr5:76120742-76120761 | None:intergenic | 40.0% | |
AGCACTATCAGCTTTCTTTG+CGG | + | Chr5:76120709-76120728 | None:intergenic | 40.0% | |
CAATACAATGGCTCTTCCAA+AGG | - | Chr5:76119846-76119865 | MsG0580028171.01.T01:CDS | 40.0% | |
CGGAAAATTTCTACAATGGC+AGG | - | Chr5:76120201-76120220 | MsG0580028171.01.T01:intron | 40.0% | |
CTCAGATTCATGGATAGTGT+TGG | - | Chr5:76121588-76121607 | MsG0580028171.01.T01:CDS | 40.0% | |
GAGCCATTGTATTGTTCTTG+AGG | + | Chr5:76119840-76119859 | None:intergenic | 40.0% | |
GCTTATGATTTCTATGCCCT+TGG | + | Chr5:76121445-76121464 | None:intergenic | 40.0% | |
TGTTCGTGTGCATGATTACA+TGG | - | Chr5:76120094-76120113 | MsG0580028171.01.T01:intron | 40.0% | |
TTTCTACAATGGCAGGGTAT+TGG | - | Chr5:76120208-76120227 | MsG0580028171.01.T01:intron | 40.0% | |
! | ACTAAATGAAGTGGACTCTG+TGG | + | Chr5:76119894-76119913 | None:intergenic | 40.0% |
! | ATCTAAAAATGGGAGTGCAC+CGG | - | Chr5:76120466-76120485 | MsG0580028171.01.T01:intron | 40.0% |
! | ATGTAGATTGTAGTCTTGGG+AGG | - | Chr5:76121378-76121397 | MsG0580028171.01.T01:intron | 40.0% |
! | CAGCAAAGGCCTCTAAAAAT+GGG | - | Chr5:76120906-76120925 | MsG0580028171.01.T01:CDS | 40.0% |
! | GAAGTATCAGCTTTCTTTGC+CGG | + | Chr5:76120488-76120507 | None:intergenic | 40.0% |
! | TGAGTTTAGCTCAGTTGGTT+GGG | + | Chr5:76121116-76121135 | None:intergenic | 40.0% |
! | TTCTACAATGGCAGGGTATT+GGG | - | Chr5:76120209-76120228 | MsG0580028171.01.T01:intron | 40.0% |
!! | TGTTGGTTCTGCTATATGCA+AGG | - | Chr5:76121410-76121429 | MsG0580028171.01.T01:intron | 40.0% |
!!! | CTTTTTTTTTGGTAGTGGCC+GGG | - | Chr5:76121054-76121073 | MsG0580028171.01.T01:intron | 40.0% |
!!! | TTTTTTTTTGGTAGTGGCCG+GGG | - | Chr5:76121055-76121074 | MsG0580028171.01.T01:intron | 40.0% |
GATGGAACAACTTTAGCTGC+AGG | + | Chr5:76120449-76120468 | None:intergenic | 45.0% | |
GCACTATCAGCTTTCTTTGC+GGG | + | Chr5:76120708-76120727 | None:intergenic | 45.0% | |
! | ATTGTAGTCTTGGGAGGCAA+TGG | - | Chr5:76121384-76121403 | MsG0580028171.01.T01:intron | 45.0% |
! | GAAGGAACAACTTTTGCTGC+AGG | + | Chr5:76120670-76120689 | None:intergenic | 45.0% |
! | GCAGCAAAGGCCTCTAAAAA+TGG | - | Chr5:76120905-76120924 | MsG0580028171.01.T01:CDS | 45.0% |
! | GTGAGTTTAGCTCAGTTGGT+TGG | + | Chr5:76121117-76121136 | None:intergenic | 45.0% |
! | TTGCGGGTACACTCCATTTT+TGG | + | Chr5:76120692-76120711 | None:intergenic | 45.0% |
! | TTGTAGTCTTGGGAGGCAAT+GGG | - | Chr5:76121385-76121404 | MsG0580028171.01.T01:intron | 45.0% |
!! | GGGTACACTCCATTTTTGGA+AGG | + | Chr5:76120688-76120707 | None:intergenic | 45.0% |
!! | GGTGCACTCCCATTTTTAGA+TGG | + | Chr5:76120467-76120486 | None:intergenic | 45.0% |
AAAGGCAGCAGTATGGCTTC+TGG | - | Chr5:76119864-76119883 | MsG0580028171.01.T01:CDS | 50.0% | |
AAGGTTCAGGGTTCAAACCC+CGG | + | Chr5:76121075-76121094 | None:intergenic | 50.0% | |
AGAAGCCATACTGCTGCCTT+TGG | + | Chr5:76119865-76119884 | None:intergenic | 50.0% | |
AGGTGTGGAAGAGATGAGAC+GGG | + | Chr5:76121510-76121529 | None:intergenic | 50.0% | |
ATGCAAGGCAGCAGTATCCA+AGG | - | Chr5:76121425-76121444 | MsG0580028171.01.T01:intron | 50.0% | |
CCAACTGAGCTAAACTCACG+AGG | - | Chr5:76121118-76121137 | MsG0580028171.01.T01:intron | 50.0% | |
CTCTTCCAAAGGCAGCAGTA+TGG | - | Chr5:76119857-76119876 | MsG0580028171.01.T01:CDS | 50.0% | |
GAGGTGTGGAAGAGATGAGA+CGG | + | Chr5:76121511-76121530 | None:intergenic | 50.0% | |
GCTGCAAGTTTCTGAGCCAA+AGG | + | Chr5:76120890-76120909 | None:intergenic | 50.0% | |
GGCTCAGAAACTTGCAGCAA+AGG | - | Chr5:76120892-76120911 | MsG0580028171.01.T01:intron | 50.0% | |
TGCAAGGCAGCAGTATCCAA+GGG | - | Chr5:76121426-76121445 | MsG0580028171.01.T01:intron | 50.0% | |
! | CCTCGTGAGTTTAGCTCAGT+TGG | + | Chr5:76121121-76121140 | None:intergenic | 50.0% |
! | TTGGGAGGCAATGGGTTTGT+TGG | - | Chr5:76121393-76121412 | MsG0580028171.01.T01:intron | 50.0% |
!! | ACGGGTTGATCGAAGTGCAT+AGG | - | Chr5:76120162-76120181 | MsG0580028171.01.T01:intron | 50.0% |
!! | GGGTGCACTCCCATTTTTAG+AGG | + | Chr5:76120918-76120937 | None:intergenic | 50.0% |
GGTGTGGAAGAGATGAGACG+GGG | + | Chr5:76121509-76121528 | None:intergenic | 55.0% | |
GTGTGGAAGAGATGAGACGG+GGG | + | Chr5:76121508-76121527 | None:intergenic | 55.0% | |
! | AGAGATGAGACGGGGGTATG+TGG | + | Chr5:76121501-76121520 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 76119834 | 76121620 | 76119834 | ID=MsG0580028171.01;Name=MsG0580028171.01 |
Chr5 | mRNA | 76119834 | 76121620 | 76119834 | ID=MsG0580028171.01.T01;Parent=MsG0580028171.01;Name=MsG0580028171.01.T01;_AED=0.50;_eAED=0.94;_QI=0|0|0|1|0.66|0.57|7|0|243 |
Chr5 | exon | 76121540 | 76121620 | 76121540 | ID=MsG0580028171.01.T01:exon:15481;Parent=MsG0580028171.01.T01 |
Chr5 | exon | 76121159 | 76121365 | 76121159 | ID=MsG0580028171.01.T01:exon:15480;Parent=MsG0580028171.01.T01 |
Chr5 | exon | 76120893 | 76121011 | 76120893 | ID=MsG0580028171.01.T01:exon:15479;Parent=MsG0580028171.01.T01 |
Chr5 | exon | 76120675 | 76120780 | 76120675 | ID=MsG0580028171.01.T01:exon:15478;Parent=MsG0580028171.01.T01 |
Chr5 | exon | 76120481 | 76120555 | 76120481 | ID=MsG0580028171.01.T01:exon:15477;Parent=MsG0580028171.01.T01 |
Chr5 | exon | 76119978 | 76120070 | 76119978 | ID=MsG0580028171.01.T01:exon:15476;Parent=MsG0580028171.01.T01 |
Chr5 | exon | 76119834 | 76119884 | 76119834 | ID=MsG0580028171.01.T01:exon:15475;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76121540 | 76121620 | 76121540 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76121159 | 76121365 | 76121159 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76120893 | 76121011 | 76120893 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76120675 | 76120780 | 76120675 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76120481 | 76120555 | 76120481 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76119978 | 76120070 | 76119978 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Chr5 | CDS | 76119834 | 76119884 | 76119834 | ID=MsG0580028171.01.T01:cds;Parent=MsG0580028171.01.T01 |
Gene Sequence |
Protein sequence |