Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012446.01.T01 | XP_013459054.1 | 92.754 | 483 | 9 | 1 | 1 | 457 | 1 | 483 | 0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012446.01.T01 | Q8VYG3 | 65.584 | 462 | 132 | 2 | 21 | 455 | 24 | 485 | 0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012446.01.T01 | A0A072UTZ1 | 92.754 | 483 | 9 | 1 | 1 | 457 | 1 | 483 | 0.0 | 926 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380012446.01 | MsG0380017841.01 | PPI |
| MsG0180004835.01 | MsG0380012446.01 | PPI |
| MsG0380012446.01 | MsG0080048140.01 | PPI |
| MsG0380012446.01 | MsG0580024373.01 | PPI |
| MsG0380012446.01 | MsG0580029407.01 | PPI |
| MsG0380012446.01 | MsG0380015944.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012446.01.T01 | MTR_3g023740 | 92.754 | 483 | 9 | 1 | 1 | 457 | 1 | 483 | 0.0 | 926 |
| MsG0380012446.01.T01 | MTR_3g105230 | 84.009 | 469 | 49 | 1 | 1 | 443 | 1 | 469 | 0.0 | 835 |
| MsG0380012446.01.T01 | MTR_5g085730 | 42.685 | 499 | 243 | 6 | 1 | 456 | 1 | 499 | 2.09e-137 | 405 |
| MsG0380012446.01.T01 | MTR_5g009970 | 45.154 | 454 | 220 | 4 | 29 | 453 | 40 | 493 | 9.77e-137 | 402 |
| MsG0380012446.01.T01 | MTR_5g093590 | 44.586 | 471 | 218 | 5 | 29 | 456 | 33 | 503 | 4.96e-135 | 398 |
| MsG0380012446.01.T01 | MTR_3g080190 | 43.724 | 478 | 227 | 5 | 22 | 457 | 32 | 509 | 2.01e-133 | 395 |
| MsG0380012446.01.T01 | MTR_8g099410 | 44.563 | 469 | 218 | 5 | 27 | 454 | 25 | 492 | 8.11e-133 | 393 |
| MsG0380012446.01.T01 | MTR_5g010000 | 44.714 | 454 | 222 | 4 | 29 | 453 | 39 | 492 | 1.59e-132 | 392 |
| MsG0380012446.01.T01 | MTR_8g099410 | 44.563 | 469 | 218 | 5 | 27 | 454 | 25 | 492 | 2.51e-131 | 393 |
| MsG0380012446.01.T01 | MTR_3g117500 | 43.167 | 461 | 221 | 6 | 30 | 451 | 24 | 482 | 2.90e-124 | 370 |
| MsG0380012446.01.T01 | MTR_8g104820 | 42.641 | 462 | 222 | 9 | 30 | 451 | 30 | 488 | 7.50e-123 | 367 |
| MsG0380012446.01.T01 | MTR_4g074960 | 42.094 | 468 | 230 | 5 | 29 | 455 | 27 | 494 | 1.14e-122 | 370 |
| MsG0380012446.01.T01 | MTR_3g080810 | 42.609 | 460 | 223 | 7 | 30 | 451 | 35 | 491 | 3.58e-122 | 365 |
| MsG0380012446.01.T01 | MTR_3g010330 | 43.103 | 464 | 228 | 5 | 25 | 454 | 20 | 481 | 9.71e-118 | 353 |
| MsG0380012446.01.T01 | MTR_4g035955 | 41.485 | 458 | 227 | 4 | 29 | 451 | 13 | 464 | 4.02e-115 | 346 |
| MsG0380012446.01.T01 | MTR_1g037340 | 43.261 | 460 | 224 | 7 | 30 | 454 | 25 | 482 | 5.23e-115 | 346 |
| MsG0380012446.01.T01 | MTR_5g009970 | 43.478 | 414 | 205 | 4 | 69 | 453 | 6 | 419 | 1.07e-114 | 343 |
| MsG0380012446.01.T01 | MTR_4g035930 | 39.427 | 454 | 242 | 2 | 29 | 451 | 14 | 465 | 8.51e-112 | 338 |
| MsG0380012446.01.T01 | MTR_4g035975 | 40.938 | 469 | 230 | 10 | 30 | 455 | 27 | 491 | 2.98e-109 | 332 |
| MsG0380012446.01.T01 | MTR_3g113720 | 39.316 | 468 | 236 | 7 | 31 | 455 | 58 | 520 | 3.04e-108 | 330 |
| MsG0380012446.01.T01 | MTR_1g088190 | 41.037 | 463 | 213 | 8 | 30 | 454 | 39 | 479 | 6.05e-108 | 328 |
| MsG0380012446.01.T01 | MTR_5g009970 | 41.837 | 392 | 199 | 4 | 91 | 453 | 1 | 392 | 1.53e-102 | 311 |
| MsG0380012446.01.T01 | MTR_8g075990 | 38.248 | 468 | 241 | 7 | 31 | 455 | 64 | 526 | 2.85e-96 | 300 |
| MsG0380012446.01.T01 | MTR_2g028480 | 37.882 | 491 | 229 | 14 | 30 | 456 | 111 | 589 | 7.11e-83 | 268 |
| MsG0380012446.01.T01 | MTR_3g090540 | 35.185 | 486 | 243 | 14 | 32 | 456 | 109 | 583 | 1.85e-80 | 261 |
| MsG0380012446.01.T01 | MTR_5g009970 | 41.975 | 324 | 159 | 4 | 159 | 453 | 1 | 324 | 7.57e-77 | 243 |
| MsG0380012446.01.T01 | MTR_3g082440 | 35.306 | 490 | 240 | 16 | 30 | 456 | 116 | 591 | 1.20e-75 | 249 |
| MsG0380012446.01.T01 | MTR_1g088190 | 39.474 | 304 | 126 | 6 | 30 | 296 | 39 | 321 | 1.60e-57 | 193 |
| MsG0380012446.01.T01 | MTR_1g111340 | 57.927 | 164 | 35 | 2 | 221 | 384 | 1 | 130 | 3.37e-53 | 175 |
| MsG0380012446.01.T01 | MTR_7g108925 | 43.709 | 151 | 83 | 2 | 305 | 454 | 50 | 199 | 3.99e-36 | 133 |
| MsG0380012446.01.T01 | MTR_4g128810 | 27.594 | 424 | 193 | 16 | 43 | 456 | 14 | 333 | 1.54e-31 | 124 |
| MsG0380012446.01.T01 | MTR_0393s0050 | 44.186 | 129 | 71 | 1 | 305 | 432 | 27 | 155 | 3.73e-26 | 105 |
| MsG0380012446.01.T01 | MTR_1g037320 | 40.782 | 179 | 77 | 1 | 91 | 240 | 1 | 179 | 1.38e-24 | 103 |
| MsG0380012446.01.T01 | MTR_1g037320 | 42.623 | 122 | 68 | 2 | 331 | 451 | 169 | 289 | 3.83e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012446.01.T01 | AT3G43860 | 65.584 | 462 | 132 | 2 | 21 | 455 | 24 | 485 | 0.0 | 624 |
| MsG0380012446.01.T01 | AT3G43860 | 65.584 | 462 | 132 | 2 | 21 | 455 | 24 | 485 | 0.0 | 624 |
| MsG0380012446.01.T01 | AT4G11050 | 45.610 | 467 | 212 | 5 | 30 | 455 | 26 | 491 | 1.01e-136 | 404 |
| MsG0380012446.01.T01 | AT4G11050 | 45.610 | 467 | 212 | 5 | 30 | 455 | 26 | 491 | 5.48e-136 | 405 |
| MsG0380012446.01.T01 | AT4G11050 | 45.610 | 467 | 212 | 5 | 30 | 455 | 26 | 491 | 5.77e-136 | 405 |
| MsG0380012446.01.T01 | AT2G32990 | 44.231 | 468 | 219 | 5 | 27 | 452 | 36 | 503 | 3.86e-131 | 389 |
| MsG0380012446.01.T01 | AT1G64390 | 44.754 | 467 | 216 | 5 | 30 | 455 | 25 | 490 | 5.55e-131 | 392 |
| MsG0380012446.01.T01 | AT4G09740 | 45.833 | 456 | 217 | 5 | 29 | 455 | 22 | 476 | 2.78e-129 | 383 |
| MsG0380012446.01.T01 | AT4G23560 | 45.595 | 454 | 217 | 5 | 31 | 455 | 24 | 476 | 5.98e-128 | 379 |
| MsG0380012446.01.T01 | AT4G02290 | 43.506 | 462 | 221 | 6 | 30 | 454 | 52 | 510 | 1.13e-124 | 372 |
| MsG0380012446.01.T01 | AT1G70710 | 40.974 | 493 | 247 | 8 | 1 | 455 | 1 | 487 | 8.23e-123 | 367 |
| MsG0380012446.01.T01 | AT1G02800 | 43.506 | 462 | 219 | 7 | 30 | 454 | 43 | 499 | 3.71e-121 | 363 |
| MsG0380012446.01.T01 | AT1G23210 | 42.026 | 464 | 227 | 7 | 30 | 455 | 28 | 487 | 3.33e-120 | 360 |
| MsG0380012446.01.T01 | AT4G39010 | 41.026 | 468 | 234 | 8 | 28 | 455 | 27 | 492 | 1.02e-114 | 346 |
| MsG0380012446.01.T01 | AT1G71380 | 42.609 | 460 | 227 | 6 | 30 | 455 | 24 | 480 | 1.02e-114 | 346 |
| MsG0380012446.01.T01 | AT2G44550 | 41.228 | 456 | 233 | 4 | 30 | 451 | 33 | 487 | 6.28e-114 | 344 |
| MsG0380012446.01.T01 | AT1G22880 | 42.391 | 460 | 228 | 6 | 30 | 455 | 24 | 480 | 7.00e-114 | 343 |
| MsG0380012446.01.T01 | AT2G44540 | 41.394 | 459 | 233 | 5 | 30 | 453 | 33 | 490 | 9.34e-114 | 343 |
| MsG0380012446.01.T01 | AT1G19940 | 41.703 | 458 | 223 | 7 | 30 | 448 | 48 | 500 | 1.48e-112 | 341 |
| MsG0380012446.01.T01 | AT1G19940 | 41.703 | 458 | 223 | 7 | 30 | 448 | 48 | 500 | 1.48e-112 | 341 |
| MsG0380012446.01.T01 | AT1G48930 | 41.379 | 464 | 232 | 4 | 29 | 452 | 29 | 492 | 1.21e-111 | 342 |
| MsG0380012446.01.T01 | AT2G44560 | 39.877 | 489 | 256 | 6 | 1 | 454 | 6 | 491 | 1.90e-110 | 335 |
| MsG0380012446.01.T01 | AT2G44570 | 40.987 | 466 | 238 | 6 | 25 | 454 | 28 | 492 | 3.61e-109 | 332 |
| MsG0380012446.01.T01 | AT1G75680 | 42.384 | 453 | 217 | 7 | 31 | 444 | 58 | 505 | 3.16e-108 | 330 |
| MsG0380012446.01.T01 | AT4G39000 | 38.065 | 465 | 248 | 5 | 30 | 455 | 25 | 488 | 2.29e-101 | 311 |
| MsG0380012446.01.T01 | AT4G38990 | 38.380 | 469 | 238 | 10 | 30 | 451 | 23 | 487 | 1.31e-97 | 302 |
| MsG0380012446.01.T01 | AT4G02290 | 40.150 | 401 | 200 | 6 | 91 | 454 | 1 | 398 | 4.21e-91 | 282 |
| MsG0380012446.01.T01 | AT1G22880 | 39.850 | 399 | 203 | 6 | 91 | 455 | 1 | 396 | 5.33e-87 | 271 |
| MsG0380012446.01.T01 | AT4G39010 | 38.859 | 368 | 185 | 6 | 24 | 352 | 23 | 389 | 3.33e-85 | 267 |
| MsG0380012446.01.T01 | AT5G49720 | 37.067 | 491 | 233 | 15 | 30 | 456 | 108 | 586 | 5.62e-81 | 263 |
| MsG0380012446.01.T01 | AT1G19940 | 39.612 | 361 | 178 | 5 | 30 | 351 | 48 | 407 | 3.32e-78 | 249 |
| MsG0380012446.01.T01 | AT4G24260 | 36.864 | 491 | 234 | 16 | 30 | 456 | 108 | 586 | 3.35e-77 | 253 |
| MsG0380012446.01.T01 | AT1G65610 | 35.041 | 488 | 243 | 15 | 30 | 456 | 116 | 590 | 1.89e-75 | 248 |
| MsG0380012446.01.T01 | AT2G44570 | 39.503 | 362 | 183 | 5 | 25 | 351 | 28 | 388 | 1.51e-74 | 240 |
| MsG0380012446.01.T01 | AT4G38990 | 41.270 | 315 | 170 | 5 | 30 | 330 | 23 | 336 | 2.19e-72 | 232 |
| MsG0380012446.01.T01 | AT1G22880 | 43.333 | 300 | 135 | 4 | 30 | 296 | 24 | 321 | 1.28e-66 | 217 |
| MsG0380012446.01.T01 | AT4G24260 | 34.197 | 386 | 185 | 13 | 30 | 351 | 108 | 488 | 2.72e-46 | 167 |
| MsG0380012446.01.T01 | AT4G24260 | 35.061 | 328 | 147 | 11 | 30 | 296 | 108 | 430 | 2.28e-42 | 156 |
| MsG0380012446.01.T01 | AT3G42153 | 40.426 | 94 | 51 | 3 | 210 | 298 | 16 | 109 | 5.17e-14 | 68.9 |
Find 114 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACTCCAGCATATTTA+AGG | 0.121059 | 3:+16689534 | None:intergenic |
| TCTAGCAAAGCTTGCTTCTT+TGG | 0.193643 | 3:-16688383 | MsG0380012446.01.T01:CDS |
| TCTTCGTTTGGTGACAAATT+TGG | 0.202470 | 3:+16688580 | None:intergenic |
| TTATATACTTACTTGCATTT+TGG | 0.202567 | 3:+16689152 | None:intergenic |
| AAACAGATGGATTACATATT+AGG | 0.203643 | 3:-16688685 | MsG0380012446.01.T01:intron |
| CTACATATAATCTATTTCTT+TGG | 0.227087 | 3:+16690192 | None:intergenic |
| GGAAACTCCCTCCCAATAAT+AGG | 0.247610 | 3:-16690704 | MsG0380012446.01.T01:CDS |
| TCTCCAAGGGACCCTATTAT+TGG | 0.258473 | 3:+16690692 | None:intergenic |
| ATTGAATAGGTTGACCTATC+AGG | 0.261586 | 3:-16690389 | MsG0380012446.01.T01:intron |
| TCTCCTCAATAAAGCAAAAT+TGG | 0.261612 | 3:-16689988 | MsG0380012446.01.T01:intron |
| AGGAGACGGCGAGCATATTT+AGG | 0.264621 | 3:+16690005 | None:intergenic |
| CCAAATCCACATGAGCTAAC+TGG | 0.270045 | 3:-16688511 | MsG0380012446.01.T01:CDS |
| TGGATAATAAAAGAGTATAT+TGG | 0.274059 | 3:-16690845 | MsG0380012446.01.T01:CDS |
| GTTATAATGACTAATTTCTA+TGG | 0.282964 | 3:+16688264 | None:intergenic |
| CTAGCAAAGCTTGCTTCTTT+GGG | 0.289529 | 3:-16688382 | MsG0380012446.01.T01:CDS |
| AGATCATACATGGTAGGATT+TGG | 0.292392 | 3:-16688646 | MsG0380012446.01.T01:CDS |
| GCTGGAGACAATGTGAAATA+TGG | 0.300456 | 3:-16690353 | MsG0380012446.01.T01:CDS |
| CCAGTTAGCTCATGTGGATT+TGG | 0.301161 | 3:+16688511 | None:intergenic |
| TACATATAATCTATTTCTTT+GGG | 0.324966 | 3:+16690193 | None:intergenic |
| TTCTTAGAGGCGCAAAGATC+AGG | 0.334942 | 3:-16690726 | MsG0380012446.01.T01:CDS |
| ATTTGCTTGTAAGGACTATC+AGG | 0.344561 | 3:+16689425 | None:intergenic |
| AAAATCTCTCATCTTCTTAG+AGG | 0.350453 | 3:-16690739 | MsG0380012446.01.T01:CDS |
| AACAGATGGATTACATATTA+GGG | 0.358207 | 3:-16688684 | MsG0380012446.01.T01:intron |
| GTCAAATTGATTTGCTTGTA+AGG | 0.358875 | 3:+16689416 | None:intergenic |
| ACCATGTATGATCTTCCTTC+AGG | 0.359145 | 3:+16688655 | None:intergenic |
| ATTTGAAGCAACAAATGAAA+TGG | 0.361468 | 3:-16690270 | MsG0380012446.01.T01:CDS |
| GGATAATAAAAGAGTATATT+GGG | 0.374475 | 3:-16690844 | MsG0380012446.01.T01:CDS |
| CAACAATGGTGATCATCAAC+TGG | 0.379312 | 3:+16690158 | None:intergenic |
| AGGAAACATGATACTTGTTA+AGG | 0.381146 | 3:-16690790 | MsG0380012446.01.T01:CDS |
| ATATTCAAAATGCCATTAGA+TGG | 0.385203 | 3:-16690244 | MsG0380012446.01.T01:CDS |
| TTGGCACTGAAGCACCTCTA+TGG | 0.398776 | 3:+16688599 | None:intergenic |
| GATCATACATGGTAGGATTT+GGG | 0.403815 | 3:-16688645 | MsG0380012446.01.T01:CDS |
| TATGTGCAAGGTTCGGTCTT+AGG | 0.410154 | 3:+16688430 | None:intergenic |
| CAAATCCACATGAGCTAACT+GGG | 0.410353 | 3:-16688510 | MsG0380012446.01.T01:CDS |
| CATGTGCTTTAAATGCTTCA+AGG | 0.411906 | 3:+16689474 | None:intergenic |
| CTCCAAGGGACCCTATTATT+GGG | 0.421960 | 3:+16690693 | None:intergenic |
| AGCAAGCCATGTTGCAATGA+TGG | 0.422452 | 3:+16690821 | None:intergenic |
| CTATGGTGAGCTTGTGTTGG+TGG | 0.424826 | 3:+16688616 | None:intergenic |
| TCACAGTTACTACATTATCA+TGG | 0.429191 | 3:-16690316 | MsG0380012446.01.T01:CDS |
| ATAATCTGTACCCCATCTAA+TGG | 0.430183 | 3:+16690232 | None:intergenic |
| GGACAGTTTATCTCTTCGTT+TGG | 0.432535 | 3:+16688568 | None:intergenic |
| AATAGATTATATGTAGAGGT+AGG | 0.435556 | 3:-16690185 | MsG0380012446.01.T01:CDS |
| AGCTGAAACTTCTGCTGCTA+TGG | 0.438179 | 3:-16690060 | MsG0380012446.01.T01:CDS |
| TAGCCATTTCTTAAAGCTTG+TGG | 0.441135 | 3:+16688546 | None:intergenic |
| TAACAAGTATCATGTTTCCT+TGG | 0.445707 | 3:+16690793 | None:intergenic |
| GTCCCACAAGCTTTAAGAAA+TGG | 0.446283 | 3:-16688549 | MsG0380012446.01.T01:CDS |
| TTGAACTTGTCGTTGATGTC+AGG | 0.451159 | 3:+16688472 | None:intergenic |
| GAAACTCCCTCCCAATAATA+GGG | 0.459252 | 3:-16690703 | MsG0380012446.01.T01:CDS |
| AGTTGGGACCTTAAATATGC+TGG | 0.461271 | 3:-16689542 | MsG0380012446.01.T01:CDS |
| TTTGAAGCAACAAATGAAAT+GGG | 0.463240 | 3:-16690269 | MsG0380012446.01.T01:CDS |
| CTCCCAATAATAGGGTCCCT+TGG | 0.468192 | 3:-16690695 | MsG0380012446.01.T01:CDS |
| GGAAACATGATACTTGTTAA+GGG | 0.470689 | 3:-16690789 | MsG0380012446.01.T01:CDS |
| GGAGACTCAGCAATGGATGA+TGG | 0.473201 | 3:-16690669 | MsG0380012446.01.T01:CDS |
| ACATGGCTTGCTTTGTTCCA+AGG | 0.473298 | 3:-16690810 | MsG0380012446.01.T01:CDS |
| AGCCATTTCTTAAAGCTTGT+GGG | 0.474167 | 3:+16688547 | None:intergenic |
| ACTTGCCAAATATAATCAAA+AGG | 0.476084 | 3:-16689223 | MsG0380012446.01.T01:CDS |
| TTGAATAGGTTGACCTATCA+GGG | 0.476637 | 3:-16690388 | MsG0380012446.01.T01:intron |
| GAGCTAACTGGGGCCATTGT+TGG | 0.483453 | 3:-16688499 | MsG0380012446.01.T01:CDS |
| ATAGATTATATGTAGAGGTA+GGG | 0.484273 | 3:-16690184 | MsG0380012446.01.T01:CDS |
| TATTCAAAATGCCATTAGAT+GGG | 0.489997 | 3:-16690243 | MsG0380012446.01.T01:CDS |
| AAGCAAATCAATTTGACTCC+TGG | 0.494274 | 3:-16689410 | MsG0380012446.01.T01:intron |
| AGTTGATGATCACCATTGTT+GGG | 0.498423 | 3:-16690156 | MsG0380012446.01.T01:CDS |
| CAGTTGATGATCACCATTGT+TGG | 0.502750 | 3:-16690157 | MsG0380012446.01.T01:CDS |
| TGCTAGAACACCGGCTGCAA+GGG | 0.505101 | 3:+16688399 | None:intergenic |
| TAAGGGTCAATTTAATTACA+AGG | 0.517252 | 3:-16690772 | MsG0380012446.01.T01:CDS |
| TTGCTGAGTCTCCTCTCCAA+GGG | 0.521853 | 3:+16690679 | None:intergenic |
| CACAGTTACTACATTATCAT+GGG | 0.527654 | 3:-16690315 | MsG0380012446.01.T01:CDS |
| CCTCTATGGTGAGCTTGTGT+TGG | 0.530222 | 3:+16688613 | None:intergenic |
| TTGCTAGAACACCGGCTGCA+AGG | 0.530745 | 3:+16688398 | None:intergenic |
| TACGTTAATTCCCTTGCAGC+CGG | 0.531438 | 3:-16688409 | MsG0380012446.01.T01:CDS |
| CTAACTGGGGCCATTGTTGG+TGG | 0.545679 | 3:-16688496 | MsG0380012446.01.T01:CDS |
| GCTGGTGGCATATTGTGTAT+TGG | 0.548328 | 3:+16689278 | None:intergenic |
| TTTGGCAAAATCAAGGAGAT+GGG | 0.548916 | 3:+16689170 | None:intergenic |
| CTGGAGACAATGTGAAATAT+GGG | 0.550838 | 3:-16690352 | MsG0380012446.01.T01:CDS |
| ATTGCTGAGTCTCCTCTCCA+AGG | 0.554564 | 3:+16690678 | None:intergenic |
| ATGGCCCCAGTTAGCTCATG+TGG | 0.556380 | 3:+16688505 | None:intergenic |
| AGCAAGCTTTGCTAGAACAC+CGG | 0.556441 | 3:+16688390 | None:intergenic |
| TCTTAGAGGCGCAAAGATCA+GGG | 0.558185 | 3:-16690725 | MsG0380012446.01.T01:CDS |
| CTTGAAGCATTTAAAGCACA+TGG | 0.561349 | 3:-16689473 | MsG0380012446.01.T01:CDS |
| CTAGTGTAGCAGAATTCAGT+TGG | 0.562994 | 3:-16689559 | MsG0380012446.01.T01:CDS |
| ATATATAGGATGAGCTAATG+TGG | 0.565889 | 3:-16689655 | MsG0380012446.01.T01:intron |
| GGGTTTATTCATATGAGAGA+TGG | 0.573447 | 3:-16689303 | MsG0380012446.01.T01:CDS |
| TATAATCAAAAGGTCAAATG+TGG | 0.574640 | 3:-16689213 | MsG0380012446.01.T01:CDS |
| ATTAACGTATGTGCAAGGTT+CGG | 0.574763 | 3:+16688423 | None:intergenic |
| TAGATTATATGTAGAGGTAG+GGG | 0.575052 | 3:-16690183 | MsG0380012446.01.T01:CDS |
| CATGGCTATACATGGCAACA+AGG | 0.579656 | 3:-16689625 | MsG0380012446.01.T01:CDS |
| TCCTGAAGGAAGATCATACA+TGG | 0.586107 | 3:-16688656 | MsG0380012446.01.T01:CDS |
| GGCTGCAACATGGCTATACA+TGG | 0.586171 | 3:-16689633 | MsG0380012446.01.T01:CDS |
| TCAGCTGCAATCTCAGTACC+AGG | 0.587163 | 3:+16690077 | None:intergenic |
| TATATAGGATGAGCTAATGT+GGG | 0.588691 | 3:-16689654 | MsG0380012446.01.T01:intron |
| AAGAAATAGATTATATGTAG+AGG | 0.589086 | 3:-16690189 | MsG0380012446.01.T01:CDS |
| CCAACACAAGCTCACCATAG+AGG | 0.591866 | 3:-16688613 | MsG0380012446.01.T01:CDS |
| GATGTCAGGTCCACCAACAA+TGG | 0.594292 | 3:+16688486 | None:intergenic |
| TAGTGTAGCAGAATTCAGTT+GGG | 0.614269 | 3:-16689558 | MsG0380012446.01.T01:CDS |
| AGCTAATGTGGGCTGCAACA+TGG | 0.614595 | 3:-16689643 | MsG0380012446.01.T01:CDS |
| GAAGGAAGATCATACATGGT+AGG | 0.615068 | 3:-16688652 | MsG0380012446.01.T01:CDS |
| GTAGTAACTGTGAATGCCAT+TGG | 0.617815 | 3:+16690326 | None:intergenic |
| AAGGGACCCTATTATTGGGA+GGG | 0.618747 | 3:+16690697 | None:intergenic |
| AGTGAACAAGAAAGATGTGC+TGG | 0.624046 | 3:+16689260 | None:intergenic |
| AATAATAGGGTCCCTTGGAG+AGG | 0.629528 | 3:-16690690 | MsG0380012446.01.T01:CDS |
| CAAGGGACCCTATTATTGGG+AGG | 0.629896 | 3:+16690696 | None:intergenic |
| TGTGAAATATGGGCTACCAA+TGG | 0.631971 | 3:-16690342 | MsG0380012446.01.T01:CDS |
| GCTTGTAAGGACTATCAGGA+AGG | 0.637627 | 3:+16689429 | None:intergenic |
| TTGGAGAGGAGACTCAGCAA+TGG | 0.645168 | 3:-16690676 | MsG0380012446.01.T01:CDS |
| ATTCAAAATGCCATTAGATG+GGG | 0.646428 | 3:-16690242 | MsG0380012446.01.T01:CDS |
| AGGGAATTAACGTATGTGCA+AGG | 0.656102 | 3:+16688418 | None:intergenic |
| AACAATGGTGATCATCAACT+GGG | 0.657794 | 3:+16690159 | None:intergenic |
| ATTGGGCCATCATTGCAACA+TGG | 0.669498 | 3:-16690827 | MsG0380012446.01.T01:CDS |
| TTTCTGGTGGTGCCCAACAA+TGG | 0.671282 | 3:+16690144 | None:intergenic |
| TGAATAGGTTGACCTATCAG+GGG | 0.682641 | 3:-16690387 | MsG0380012446.01.T01:intron |
| GAATAGGTTGACCTATCAGG+GGG | 0.686550 | 3:-16690386 | MsG0380012446.01.T01:intron |
| TTAATTGATAGTAACACACC+TGG | 0.700118 | 3:-16690095 | MsG0380012446.01.T01:CDS |
| GAACAAGAAAGATGTGCTGG+TGG | 0.714032 | 3:+16689263 | None:intergenic |
| AAATCCACATGAGCTAACTG+GGG | 0.756843 | 3:-16688509 | MsG0380012446.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAATGTATTTTTTAAG+GGG | + | Chr3:16689970-16689989 | None:intergenic | 10.0% |
| !!! | TACATATAATCTATTTCTTT+GGG | + | Chr3:16688892-16688911 | None:intergenic | 15.0% |
| !!! | TTGATTTTATTGAATTGAAT+AGG | - | Chr3:16688680-16688699 | MsG0380012446.01.T01:CDS | 15.0% |
| !! | AAAGAATTCTCTAAATCTAA+CGG | + | Chr3:16690173-16690192 | None:intergenic | 20.0% |
| !! | AAGAAATAGATTATATGTAG+AGG | - | Chr3:16688893-16688912 | MsG0380012446.01.T01:intron | 20.0% |
| !! | ACGTAGAAAATGAATAATTT+GGG | - | Chr3:16688648-16688667 | MsG0380012446.01.T01:CDS | 20.0% |
| !! | ATATTTAAGTATGATTATGC+AGG | - | Chr3:16689755-16689774 | MsG0380012446.01.T01:intron | 20.0% |
| !! | CTCAAAACAAAATCATTATT+AGG | - | Chr3:16688463-16688482 | MsG0380012446.01.T01:CDS | 20.0% |
| !! | GTTATAATGACTAATTTCTA+TGG | + | Chr3:16690821-16690840 | None:intergenic | 20.0% |
| !! | TACGTAGAAAATGAATAATT+TGG | - | Chr3:16688647-16688666 | MsG0380012446.01.T01:CDS | 20.0% |
| !!! | CATAATTCAACTTTTTCTAA+TGG | - | Chr3:16688589-16688608 | MsG0380012446.01.T01:CDS | 20.0% |
| !!! | CATTTTTCTTAACATGTAAT+TGG | + | Chr3:16689171-16689190 | None:intergenic | 20.0% |
| !!! | CTACATATAATCTATTTCTT+TGG | + | Chr3:16688893-16688912 | None:intergenic | 20.0% |
| !!! | GGATAATAAAAGAGTATATT+GGG | - | Chr3:16688238-16688257 | MsG0380012446.01.T01:three_prime_UTR | 20.0% |
| !!! | TGGATAATAAAAGAGTATAT+TGG | - | Chr3:16688237-16688256 | MsG0380012446.01.T01:three_prime_UTR | 20.0% |
| !!! | TTATATACTTACTTGCATTT+TGG | + | Chr3:16689933-16689952 | None:intergenic | 20.0% |
| !!! | TTTGACCTTTTGATTATATT+TGG | + | Chr3:16689867-16689886 | None:intergenic | 20.0% |
| ! | AAATGTACATGTAATTTACC+AGG | + | Chr3:16689693-16689712 | None:intergenic | 25.0% |
| ! | AATAGATTATATGTAGAGGT+AGG | - | Chr3:16688897-16688916 | MsG0380012446.01.T01:intron | 25.0% |
| ! | ACTTGCCAAATATAATCAAA+AGG | - | Chr3:16689859-16689878 | MsG0380012446.01.T01:intron | 25.0% |
| ! | ATAGACATATATAATCGTAG+AGG | - | Chr3:16690295-16690314 | MsG0380012446.01.T01:CDS | 25.0% |
| ! | ATAGATTATATGTAGAGGTA+GGG | - | Chr3:16688898-16688917 | MsG0380012446.01.T01:intron | 25.0% |
| ! | ATATTCAAAATGCCATTAGA+TGG | - | Chr3:16688838-16688857 | MsG0380012446.01.T01:intron | 25.0% |
| ! | ATGTAATTGGTATATTGTCT+AGG | + | Chr3:16689158-16689177 | None:intergenic | 25.0% |
| ! | CACTAAGAGTGAATTAATAT+TGG | - | Chr3:16689374-16689393 | MsG0380012446.01.T01:intron | 25.0% |
| ! | TAAGGGTCAATTTAATTACA+AGG | - | Chr3:16688310-16688329 | MsG0380012446.01.T01:three_prime_UTR | 25.0% |
| ! | TATAATCAAAAGGTCAAATG+TGG | - | Chr3:16689869-16689888 | MsG0380012446.01.T01:intron | 25.0% |
| ! | TATTCAAAATGCCATTAGAT+GGG | - | Chr3:16688839-16688858 | MsG0380012446.01.T01:intron | 25.0% |
| ! | TGTTAAAAATGTAGTTGAGA+GGG | - | Chr3:16690765-16690784 | MsG0380012446.01.T01:CDS | 25.0% |
| ! | TTAATGTGATGCGTATATAT+AGG | - | Chr3:16689413-16689432 | MsG0380012446.01.T01:CDS | 25.0% |
| ! | TTGTTAAAAATGTAGTTGAG+AGG | - | Chr3:16690764-16690783 | MsG0380012446.01.T01:CDS | 25.0% |
| ! | TTTATCTCTAAATGTTAGTG+AGG | - | Chr3:16688518-16688537 | MsG0380012446.01.T01:CDS | 25.0% |
| !! | AACTACATTTTTAACAACGT+TGG | + | Chr3:16690761-16690780 | None:intergenic | 25.0% |
| !! | AATCTACTACAACTTTTAGT+AGG | + | Chr3:16690796-16690815 | None:intergenic | 25.0% |
| !! | ACTACATTTTTAACAACGTT+GGG | + | Chr3:16690760-16690779 | None:intergenic | 25.0% |
| !! | ATTTGAAGCAACAAATGAAA+TGG | - | Chr3:16688812-16688831 | MsG0380012446.01.T01:intron | 25.0% |
| !! | TTTGAAGCAACAAATGAAAT+GGG | - | Chr3:16688813-16688832 | MsG0380012446.01.T01:intron | 25.0% |
| !!! | AAACAGATGGATTACATATT+AGG | - | Chr3:16690397-16690416 | MsG0380012446.01.T01:intron | 25.0% |
| !!! | AACAGATGGATTACATATTA+GGG | - | Chr3:16690398-16690417 | MsG0380012446.01.T01:intron | 25.0% |
| !!! | ATACCAATTTTGCTTTATTG+AGG | + | Chr3:16689100-16689119 | None:intergenic | 25.0% |
| !!! | TTACATTTTGAAGGTCAAAA+AGG | - | Chr3:16689585-16689604 | MsG0380012446.01.T01:CDS | 25.0% |
| AAAATCTCTCATCTTCTTAG+AGG | - | Chr3:16688343-16688362 | MsG0380012446.01.T01:three_prime_UTR | 30.0% | |
| AGCATATGTAATAGCAACTT+TGG | + | Chr3:16690323-16690342 | None:intergenic | 30.0% | |
| ATATATAGGATGAGCTAATG+TGG | - | Chr3:16689427-16689446 | MsG0380012446.01.T01:CDS | 30.0% | |
| ATATTAGGGAAAAATCCTGA+AGG | - | Chr3:16690412-16690431 | MsG0380012446.01.T01:intron | 30.0% | |
| ATATTCCCAACCAATACTAT+AGG | + | Chr3:16689243-16689262 | None:intergenic | 30.0% | |
| ATATTTGGATGGTAAACAGA+TGG | - | Chr3:16690384-16690403 | MsG0380012446.01.T01:intron | 30.0% | |
| ATCAACATGCCTAAAAACAA+TGG | + | Chr3:16689057-16689076 | None:intergenic | 30.0% | |
| ATTCAAAATGCCATTAGATG+GGG | - | Chr3:16688840-16688859 | MsG0380012446.01.T01:intron | 30.0% | |
| CACAGTTACTACATTATCAT+GGG | - | Chr3:16688767-16688786 | MsG0380012446.01.T01:intron | 30.0% | |
| CACTCTTAGTGAATTAAGAA+AGG | + | Chr3:16689365-16689384 | None:intergenic | 30.0% | |
| GAATTGGCAAAATCTCATAA+AGG | - | Chr3:16689304-16689323 | MsG0380012446.01.T01:CDS | 30.0% | |
| GCATATGTAATAGCAACTTT+GGG | + | Chr3:16690322-16690341 | None:intergenic | 30.0% | |
| TAACAAGTATCATGTTTCCT+TGG | + | Chr3:16688292-16688311 | None:intergenic | 30.0% | |
| TAGAGTGACTGTCTAATATT+TGG | - | Chr3:16690369-16690388 | MsG0380012446.01.T01:CDS | 30.0% | |
| TAGATTATATGTAGAGGTAG+GGG | - | Chr3:16688899-16688918 | MsG0380012446.01.T01:intron | 30.0% | |
| TATATAGGATGAGCTAATGT+GGG | - | Chr3:16689428-16689447 | MsG0380012446.01.T01:CDS | 30.0% | |
| TCACAGTTACTACATTATCA+TGG | - | Chr3:16688766-16688785 | MsG0380012446.01.T01:intron | 30.0% | |
| TCTCCTCAATAAAGCAAAAT+TGG | - | Chr3:16689094-16689113 | MsG0380012446.01.T01:intron | 30.0% | |
| TTAAGTATGATTATGCAGGT+GGG | - | Chr3:16689759-16689778 | MsG0380012446.01.T01:intron | 30.0% | |
| TTTAAGTATGATTATGCAGG+TGG | - | Chr3:16689758-16689777 | MsG0380012446.01.T01:intron | 30.0% | |
| ! | AGGAAACATGATACTTGTTA+AGG | - | Chr3:16688292-16688311 | MsG0380012446.01.T01:three_prime_UTR | 30.0% |
| ! | AGTTGCTATTACATATGCTT+TGG | - | Chr3:16690324-16690343 | MsG0380012446.01.T01:CDS | 30.0% |
| ! | CTACATTTTTAACAACGTTG+GGG | + | Chr3:16690759-16690778 | None:intergenic | 30.0% |
| ! | CTCTTTGTCTTCATATTTTC+TGG | + | Chr3:16688957-16688976 | None:intergenic | 30.0% |
| ! | GGAAACATGATACTTGTTAA+GGG | - | Chr3:16688293-16688312 | MsG0380012446.01.T01:three_prime_UTR | 30.0% |
| ! | TTAATTGATAGTAACACACC+TGG | - | Chr3:16688987-16689006 | MsG0380012446.01.T01:intron | 30.0% |
| ! | TTTGTCTTCATATTTTCTGG+TGG | + | Chr3:16688954-16688973 | None:intergenic | 30.0% |
| !! | ATTTTGCTTTATTGAGGAGA+CGG | + | Chr3:16689094-16689113 | None:intergenic | 30.0% |
| !! | GTCAAATTGATTTGCTTGTA+AGG | + | Chr3:16689669-16689688 | None:intergenic | 30.0% |
| AACAATGGTGATCATCAACT+GGG | + | Chr3:16688926-16688945 | None:intergenic | 35.0% | |
| AAGCAAATCAATTTGACTCC+TGG | - | Chr3:16689672-16689691 | MsG0380012446.01.T01:intron | 35.0% | |
| AGATCATACATGGTAGGATT+TGG | - | Chr3:16690436-16690455 | MsG0380012446.01.T01:intron | 35.0% | |
| AGCCATTTCTTAAAGCTTGT+GGG | + | Chr3:16690538-16690557 | None:intergenic | 35.0% | |
| AGTATGATGTTGCAGCTTTA+GGG | - | Chr3:16690146-16690165 | MsG0380012446.01.T01:CDS | 35.0% | |
| AGTTGCTATAACATGTGCTT+TGG | - | Chr3:16690261-16690280 | MsG0380012446.01.T01:CDS | 35.0% | |
| ATAATCTGTACCCCATCTAA+TGG | + | Chr3:16688853-16688872 | None:intergenic | 35.0% | |
| ATTAACGTATGTGCAAGGTT+CGG | + | Chr3:16690662-16690681 | None:intergenic | 35.0% | |
| ATTTGCTTGTAAGGACTATC+AGG | + | Chr3:16689660-16689679 | None:intergenic | 35.0% | |
| CTGGAGACAATGTGAAATAT+GGG | - | Chr3:16688730-16688749 | MsG0380012446.01.T01:intron | 35.0% | |
| CTTGAACTCCAGCATATTTA+AGG | + | Chr3:16689551-16689570 | None:intergenic | 35.0% | |
| GATCATACATGGTAGGATTT+GGG | - | Chr3:16690437-16690456 | MsG0380012446.01.T01:intron | 35.0% | |
| GGGTTTATTCATATGAGAGA+TGG | - | Chr3:16689779-16689798 | MsG0380012446.01.T01:intron | 35.0% | |
| GTGACTGTCTAATATTTGGA+TGG | - | Chr3:16690373-16690392 | MsG0380012446.01.T01:CDS | 35.0% | |
| GTTGAAGTGACCTATAGTAT+TGG | - | Chr3:16689230-16689249 | MsG0380012446.01.T01:CDS | 35.0% | |
| TAGCCATTTCTTAAAGCTTG+TGG | + | Chr3:16690539-16690558 | None:intergenic | 35.0% | |
| TAGTATGATGTTGCAGCTTT+AGG | - | Chr3:16690145-16690164 | MsG0380012446.01.T01:CDS | 35.0% | |
| TAGTGTAGCAGAATTCAGTT+GGG | - | Chr3:16689524-16689543 | MsG0380012446.01.T01:CDS | 35.0% | |
| TCTCATAAAGGAACCTATGA+TGG | - | Chr3:16689316-16689335 | MsG0380012446.01.T01:intron | 35.0% | |
| TTTGGCAAAATCAAGGAGAT+GGG | + | Chr3:16689915-16689934 | None:intergenic | 35.0% | |
| ! | ATTGAATAGGTTGACCTATC+AGG | - | Chr3:16688693-16688712 | MsG0380012446.01.T01:intron | 35.0% |
| ! | CATGTGCTTTAAATGCTTCA+AGG | + | Chr3:16689611-16689630 | None:intergenic | 35.0% |
| ! | CTCACTCAGTTACATTTTGA+AGG | - | Chr3:16689576-16689595 | MsG0380012446.01.T01:CDS | 35.0% |
| ! | CTTGAAGCATTTAAAGCACA+TGG | - | Chr3:16689609-16689628 | MsG0380012446.01.T01:CDS | 35.0% |
| ! | TCTTCGTTTGGTGACAAATT+TGG | + | Chr3:16690505-16690524 | None:intergenic | 35.0% |
| ! | TTGAATAGGTTGACCTATCA+GGG | - | Chr3:16688694-16688713 | MsG0380012446.01.T01:intron | 35.0% |
| ! | TTTTGGCAAAATCAAGGAGA+TGG | + | Chr3:16689916-16689935 | None:intergenic | 35.0% |
| !! | AAGTGACCTATAGTATTGGT+TGG | - | Chr3:16689234-16689253 | MsG0380012446.01.T01:CDS | 35.0% |
| !! | AGTGACCTATAGTATTGGTT+GGG | - | Chr3:16689235-16689254 | MsG0380012446.01.T01:CDS | 35.0% |
| !! | AGTTGATGATCACCATTGTT+GGG | - | Chr3:16688926-16688945 | MsG0380012446.01.T01:intron | 35.0% |
| !! | CTGCTTCTTCCATTGTTTTT+AGG | - | Chr3:16689045-16689064 | MsG0380012446.01.T01:intron | 35.0% |
| !! | CTTGCATTTTGGCAAAATCA+AGG | + | Chr3:16689922-16689941 | None:intergenic | 35.0% |
| AAATCCACATGAGCTAACTG+GGG | - | Chr3:16690573-16690592 | MsG0380012446.01.T01:intron | 40.0% | |
| AATCCTCTACGATTGTGGTA+TGG | + | Chr3:16690238-16690257 | None:intergenic | 40.0% | |
| ACCATGTATGATCTTCCTTC+AGG | + | Chr3:16690430-16690449 | None:intergenic | 40.0% | |
| AGGGAATTAACGTATGTGCA+AGG | + | Chr3:16690667-16690686 | None:intergenic | 40.0% | |
| AGTGAACAAGAAAGATGTGC+TGG | + | Chr3:16689825-16689844 | None:intergenic | 40.0% | |
| AGTTGGGACCTTAAATATGC+TGG | - | Chr3:16689540-16689559 | MsG0380012446.01.T01:CDS | 40.0% | |
| CAAATCCACATGAGCTAACT+GGG | - | Chr3:16690572-16690591 | MsG0380012446.01.T01:intron | 40.0% | |
| CAACAATGGTGATCATCAAC+TGG | + | Chr3:16688927-16688946 | None:intergenic | 40.0% | |
| CATCATAATATCCCCCTGAT+AGG | + | Chr3:16688710-16688729 | None:intergenic | 40.0% | |
| CGAAAAGCTGCTAGGAAATT+GGG | + | Chr3:16689285-16689304 | None:intergenic | 40.0% | |
| CTAGTGTAGCAGAATTCAGT+TGG | - | Chr3:16689523-16689542 | MsG0380012446.01.T01:CDS | 40.0% | |
| CTTTGAATCCTCTACGATTG+TGG | + | Chr3:16690243-16690262 | None:intergenic | 40.0% | |
| GAAACTCCCTCCCAATAATA+GGG | - | Chr3:16688379-16688398 | MsG0380012446.01.T01:CDS | 40.0% | |
| GAAGGAAGATCATACATGGT+AGG | - | Chr3:16690430-16690449 | MsG0380012446.01.T01:intron | 40.0% | |
| GCTGCAACATCATACTACAT+CGG | + | Chr3:16690142-16690161 | None:intergenic | 40.0% | |
| GCTGGAGACAATGTGAAATA+TGG | - | Chr3:16688729-16688748 | MsG0380012446.01.T01:intron | 40.0% | |
| GGACAGTTTATCTCTTCGTT+TGG | + | Chr3:16690517-16690536 | None:intergenic | 40.0% | |
| GTAGTAACTGTGAATGCCAT+TGG | + | Chr3:16688759-16688778 | None:intergenic | 40.0% | |
| TCCTGAAGGAAGATCATACA+TGG | - | Chr3:16690426-16690445 | MsG0380012446.01.T01:intron | 40.0% | |
| TCGAAAAGCTGCTAGGAAAT+TGG | + | Chr3:16689286-16689305 | None:intergenic | 40.0% | |
| TTGAACTTGTCGTTGATGTC+AGG | + | Chr3:16690613-16690632 | None:intergenic | 40.0% | |
| ! | AGGAACCTATGATGGAGAAT+TGG | - | Chr3:16689324-16689343 | MsG0380012446.01.T01:intron | 40.0% |
| ! | CTAGCAAAGCTTGCTTCTTT+GGG | - | Chr3:16690700-16690719 | MsG0380012446.01.T01:CDS | 40.0% |
| ! | TCTAGCAAAGCTTGCTTCTT+TGG | - | Chr3:16690699-16690718 | MsG0380012446.01.T01:CDS | 40.0% |
| ! | TGAATAGGTTGACCTATCAG+GGG | - | Chr3:16688695-16688714 | MsG0380012446.01.T01:intron | 40.0% |
| ! | TGTGAAATATGGGCTACCAA+TGG | - | Chr3:16688740-16688759 | MsG0380012446.01.T01:intron | 40.0% |
| ! | TTCCTAGCAGCTTTTCGAAT+TGG | - | Chr3:16689288-16689307 | MsG0380012446.01.T01:CDS | 40.0% |
| !! | ATTGTGGTATGGTGTTGTCA+CGG | + | Chr3:16690227-16690246 | None:intergenic | 40.0% |
| !! | CAGTTGATGATCACCATTGT+TGG | - | Chr3:16688925-16688944 | MsG0380012446.01.T01:intron | 40.0% |
| !! | GTCCCACAAGCTTTAAGAAA+TGG | - | Chr3:16690533-16690552 | MsG0380012446.01.T01:intron | 40.0% |
| AAGCGCCAATTCTCCATCAT+AGG | + | Chr3:16689332-16689351 | None:intergenic | 45.0% | |
| AAGGGACCCTATTATTGGGA+GGG | + | Chr3:16688388-16688407 | None:intergenic | 45.0% | |
| AATAATAGGGTCCCTTGGAG+AGG | - | Chr3:16688392-16688411 | MsG0380012446.01.T01:CDS | 45.0% | |
| ACACCATACCACAATCGTAG+AGG | - | Chr3:16690232-16690251 | MsG0380012446.01.T01:CDS | 45.0% | |
| AGCAAGCCATGTTGCAATGA+TGG | + | Chr3:16688264-16688283 | None:intergenic | 45.0% | |
| AGCAAGCTTTGCTAGAACAC+CGG | + | Chr3:16690695-16690714 | None:intergenic | 45.0% | |
| AGCTGAAACTTCTGCTGCTA+TGG | - | Chr3:16689022-16689041 | MsG0380012446.01.T01:intron | 45.0% | |
| ATTGGGCCATCATTGCAACA+TGG | - | Chr3:16688255-16688274 | MsG0380012446.01.T01:three_prime_UTR | 45.0% | |
| CATGGCTATACATGGCAACA+AGG | - | Chr3:16689457-16689476 | MsG0380012446.01.T01:CDS | 45.0% | |
| CCAAATCCACATGAGCTAAC+TGG | - | Chr3:16690571-16690590 | MsG0380012446.01.T01:intron | 45.0% | |
| CCAGTTAGCTCATGTGGATT+TGG | + | Chr3:16690574-16690593 | None:intergenic | 45.0% | |
| CTCCAAGGGACCCTATTATT+GGG | + | Chr3:16688392-16688411 | None:intergenic | 45.0% | |
| GAACAAGAAAGATGTGCTGG+TGG | + | Chr3:16689822-16689841 | None:intergenic | 45.0% | |
| GCTGGTGGCATATTGTGTAT+TGG | + | Chr3:16689807-16689826 | None:intergenic | 45.0% | |
| GCTTGTAAGGACTATCAGGA+AGG | + | Chr3:16689656-16689675 | None:intergenic | 45.0% | |
| GGAAACTCCCTCCCAATAAT+AGG | - | Chr3:16688378-16688397 | MsG0380012446.01.T01:CDS | 45.0% | |
| TACGTTAATTCCCTTGCAGC+CGG | - | Chr3:16690673-16690692 | MsG0380012446.01.T01:CDS | 45.0% | |
| TCAGGGGGATATTATGATGC+TGG | - | Chr3:16688711-16688730 | MsG0380012446.01.T01:intron | 45.0% | |
| TCTCCAAGGGACCCTATTAT+TGG | + | Chr3:16688393-16688412 | None:intergenic | 45.0% | |
| TGCCAATTCGAAAAGCTGCT+AGG | + | Chr3:16689293-16689312 | None:intergenic | 45.0% | |
| ! | GAATAGGTTGACCTATCAGG+GGG | - | Chr3:16688696-16688715 | MsG0380012446.01.T01:intron | 45.0% |
| ! | TATGTGCAAGGTTCGGTCTT+AGG | + | Chr3:16690655-16690674 | None:intergenic | 45.0% |
| ! | TCTTAGAGGCGCAAAGATCA+GGG | - | Chr3:16688357-16688376 | MsG0380012446.01.T01:three_prime_UTR | 45.0% |
| ! | TTCTTAGAGGCGCAAAGATC+AGG | - | Chr3:16688356-16688375 | MsG0380012446.01.T01:three_prime_UTR | 45.0% |
| !! | ACATGGCTTGCTTTGTTCCA+AGG | - | Chr3:16688272-16688291 | MsG0380012446.01.T01:three_prime_UTR | 45.0% |
| !!! | ATAAATAATGTATTTTTTAA+GGG | + | Chr3:16689971-16689990 | None:intergenic | 5.0% |
| !!! | TATAAATAATGTATTTTTTA+AGG | + | Chr3:16689972-16689991 | None:intergenic | 5.0% |
| AGGAGACGGCGAGCATATTT+AGG | + | Chr3:16689080-16689099 | None:intergenic | 50.0% | |
| ATTGCTGAGTCTCCTCTCCA+AGG | + | Chr3:16688407-16688426 | None:intergenic | 50.0% | |
| CAAGGGACCCTATTATTGGG+AGG | + | Chr3:16688389-16688408 | None:intergenic | 50.0% | |
| CCAACACAAGCTCACCATAG+AGG | - | Chr3:16690469-16690488 | MsG0380012446.01.T01:intron | 50.0% | |
| CCTCTATGGTGAGCTTGTGT+TGG | + | Chr3:16690472-16690491 | None:intergenic | 50.0% | |
| CTATGGTGAGCTTGTGTTGG+TGG | + | Chr3:16690469-16690488 | None:intergenic | 50.0% | |
| CTCCCAATAATAGGGTCCCT+TGG | - | Chr3:16688387-16688406 | MsG0380012446.01.T01:CDS | 50.0% | |
| GATGTCAGGTCCACCAACAA+TGG | + | Chr3:16690599-16690618 | None:intergenic | 50.0% | |
| GGAGACTCAGCAATGGATGA+TGG | - | Chr3:16688413-16688432 | MsG0380012446.01.T01:CDS | 50.0% | |
| GGCTGCAACATGGCTATACA+TGG | - | Chr3:16689449-16689468 | MsG0380012446.01.T01:CDS | 50.0% | |
| TCAGCTGCAATCTCAGTACC+AGG | + | Chr3:16689008-16689027 | None:intergenic | 50.0% | |
| TTGCTGAGTCTCCTCTCCAA+GGG | + | Chr3:16688406-16688425 | None:intergenic | 50.0% | |
| TTGGAGAGGAGACTCAGCAA+TGG | - | Chr3:16688406-16688425 | MsG0380012446.01.T01:CDS | 50.0% | |
| ! | AGCTAATGTGGGCTGCAACA+TGG | - | Chr3:16689439-16689458 | MsG0380012446.01.T01:CDS | 50.0% |
| ! | TTGGCACTGAAGCACCTCTA+TGG | + | Chr3:16690486-16690505 | None:intergenic | 50.0% |
| ! | TTTCTGGTGGTGCCCAACAA+TGG | + | Chr3:16688941-16688960 | None:intergenic | 50.0% |
| ATGGCCCCAGTTAGCTCATG+TGG | + | Chr3:16690580-16690599 | None:intergenic | 55.0% | |
| CTAACTGGGGCCATTGTTGG+TGG | - | Chr3:16690586-16690605 | MsG0380012446.01.T01:intron | 55.0% | |
| GAGCTAACTGGGGCCATTGT+TGG | - | Chr3:16690583-16690602 | MsG0380012446.01.T01:intron | 55.0% | |
| ! | TGCTAGAACACCGGCTGCAA+GGG | + | Chr3:16690686-16690705 | None:intergenic | 55.0% |
| ! | TTGCTAGAACACCGGCTGCA+AGG | + | Chr3:16690687-16690706 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 16688236 | 16690868 | 16688236 | ID=MsG0380012446.01;Name=MsG0380012446.01 |
| Chr3 | mRNA | 16688236 | 16690868 | 16688236 | ID=MsG0380012446.01.T01;Parent=MsG0380012446.01;Name=MsG0380012446.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.8|1|1|0.8|0.66|6|142|457 |
| Chr3 | exon | 16688236 | 16688701 | 16688236 | ID=MsG0380012446.01.T01:exon:21911;Parent=MsG0380012446.01.T01 |
| Chr3 | exon | 16689164 | 16689327 | 16689164 | ID=MsG0380012446.01.T01:exon:21910;Parent=MsG0380012446.01.T01 |
| Chr3 | exon | 16689411 | 16689669 | 16689411 | ID=MsG0380012446.01.T01:exon:21909;Parent=MsG0380012446.01.T01 |
| Chr3 | exon | 16689989 | 16690402 | 16689989 | ID=MsG0380012446.01.T01:exon:21908;Parent=MsG0380012446.01.T01 |
| Chr3 | exon | 16690656 | 16690868 | 16690656 | ID=MsG0380012446.01.T01:exon:21907;Parent=MsG0380012446.01.T01 |
| Chr3 | CDS | 16690656 | 16690868 | 16690656 | ID=MsG0380012446.01.T01:cds;Parent=MsG0380012446.01.T01 |
| Chr3 | CDS | 16689989 | 16690402 | 16689989 | ID=MsG0380012446.01.T01:cds;Parent=MsG0380012446.01.T01 |
| Chr3 | CDS | 16689411 | 16689669 | 16689411 | ID=MsG0380012446.01.T01:cds;Parent=MsG0380012446.01.T01 |
| Chr3 | CDS | 16689164 | 16689327 | 16689164 | ID=MsG0380012446.01.T01:cds;Parent=MsG0380012446.01.T01 |
| Chr3 | CDS | 16688378 | 16688701 | 16688378 | ID=MsG0380012446.01.T01:cds;Parent=MsG0380012446.01.T01 |
| Chr3 | three_prime_UTR | 16688236 | 16688377 | 16688236 | ID=MsG0380012446.01.T01:three_prime_utr;Parent=MsG0380012446.01.T01 |
| Gene Sequence |
| Protein sequence |
