AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004835.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004835.01.T01 MTR_1g088190 99.281 417 3 0 55 471 69 485 0.0 868
MsG0180004835.01.T01 MTR_3g080810 61.939 423 160 1 44 465 72 494 0.0 551
MsG0180004835.01.T01 MTR_8g104820 61.412 425 161 2 44 465 67 491 0.0 543
MsG0180004835.01.T01 MTR_1g088190 98.814 253 3 0 55 307 69 321 0.0 531
MsG0180004835.01.T01 MTR_3g117500 59.569 418 166 2 50 464 67 484 0.0 522
MsG0180004835.01.T01 MTR_3g010330 59.198 424 167 3 44 465 62 481 9.98e-177 504
MsG0180004835.01.T01 MTR_4g035930 53.919 421 189 2 44 464 52 467 3.18e-164 472
MsG0180004835.01.T01 MTR_4g035975 56.563 419 174 5 49 464 76 489 1.80e-162 468
MsG0180004835.01.T01 MTR_4g035955 53.606 416 188 2 49 464 56 466 3.57e-160 462
MsG0180004835.01.T01 MTR_5g010000 51.059 425 195 6 44 464 77 492 1.58e-148 433
MsG0180004835.01.T01 MTR_8g099410 50.115 435 205 7 44 469 65 496 1.90e-147 431
MsG0180004835.01.T01 MTR_8g099410 50.115 435 205 7 44 469 65 496 2.04e-146 432
MsG0180004835.01.T01 MTR_5g009970 49.881 421 196 7 49 464 9 419 3.88e-145 422
MsG0180004835.01.T01 MTR_5g009970 49.531 426 200 7 44 464 78 493 2.79e-144 422
MsG0180004835.01.T01 MTR_3g080190 49.645 423 203 6 49 462 82 503 3.20e-140 413
MsG0180004835.01.T01 MTR_5g085730 47.196 428 214 7 49 466 73 498 3.63e-140 412
MsG0180004835.01.T01 MTR_5g093590 46.714 426 216 6 49 464 76 500 2.53e-132 392
MsG0180004835.01.T01 MTR_5g009970 48.259 402 193 7 68 464 1 392 1.68e-131 386
MsG0180004835.01.T01 MTR_1g037340 48.364 428 208 7 44 465 62 482 1.14e-127 379
MsG0180004835.01.T01 MTR_3g105230 45.169 414 213 6 44 454 67 469 4.24e-127 378
MsG0180004835.01.T01 MTR_4g074960 45.012 431 227 6 49 471 71 499 3.07e-125 378
MsG0180004835.01.T01 MTR_3g023740 45.714 420 214 6 49 465 72 480 5.48e-123 367
MsG0180004835.01.T01 MTR_5g009970 50.000 334 154 6 134 464 1 324 1.60e-106 320
MsG0180004835.01.T01 MTR_3g113720 40.972 432 238 8 44 464 93 518 1.97e-106 327
MsG0180004835.01.T01 MTR_8g075990 43.418 433 228 8 44 465 99 525 8.71e-104 320
MsG0180004835.01.T01 MTR_7g108925 86.503 163 22 0 309 471 43 205 6.04e-102 304
MsG0180004835.01.T01 MTR_2g028480 41.573 445 222 14 48 465 157 590 3.38e-82 266
MsG0180004835.01.T01 MTR_3g082440 38.530 449 232 15 51 469 162 596 6.65e-76 249
MsG0180004835.01.T01 MTR_3g090540 35.886 457 240 16 44 464 144 583 1.07e-73 243
MsG0180004835.01.T01 MTR_0393s0050 61.429 140 53 1 309 447 20 159 3.26e-57 187
MsG0180004835.01.T01 MTR_1g037320 47.531 162 81 2 68 227 1 160 8.50e-35 132
MsG0180004835.01.T01 MTR_1g037320 45.714 140 71 3 327 462 151 289 4.03e-30 119
MsG0180004835.01.T01 MTR_7g108920 67.742 93 29 1 215 307 86 177 2.79e-32 121
MsG0180004835.01.T01 MTR_4g128810 37.086 151 89 3 316 464 187 333 7.42e-25 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004835.01.T01 AT4G02290 78.271 428 93 0 44 471 89 516 0.0 716
MsG0180004835.01.T01 AT1G02800 76.887 424 96 1 44 467 80 501 0.0 681
MsG0180004835.01.T01 AT4G02290 78.465 404 87 0 68 471 1 404 0.0 676
MsG0180004835.01.T01 AT1G70710 60.471 425 167 1 44 467 65 489 0.0 535
MsG0180004835.01.T01 AT1G23210 59.242 422 172 0 44 465 65 486 0.0 525
MsG0180004835.01.T01 AT1G22880 57.857 420 172 2 49 467 66 481 1.52e-178 509
MsG0180004835.01.T01 AT1G71380 56.501 423 179 2 44 465 61 479 1.13e-173 497
MsG0180004835.01.T01 AT4G39010 56.471 425 181 3 49 469 71 495 4.22e-172 493
MsG0180004835.01.T01 AT1G22880 56.608 401 169 2 68 467 1 397 2.31e-165 472
MsG0180004835.01.T01 AT4G39000 52.235 425 199 3 44 464 62 486 1.97e-156 453
MsG0180004835.01.T01 AT1G64390 50.580 431 201 7 44 465 62 489 2.31e-148 437
MsG0180004835.01.T01 AT4G23560 51.179 424 195 5 49 469 65 479 9.93e-145 423
MsG0180004835.01.T01 AT4G38990 49.767 430 207 5 44 464 60 489 2.48e-144 422
MsG0180004835.01.T01 AT4G11050 48.951 429 209 6 44 464 63 489 7.53e-144 423
MsG0180004835.01.T01 AT4G11050 48.951 429 209 6 44 464 63 489 2.15e-143 424
MsG0180004835.01.T01 AT4G11050 48.951 429 209 6 44 464 63 489 2.49e-143 424
MsG0180004835.01.T01 AT2G32990 49.882 423 202 6 49 462 81 502 8.12e-143 419
MsG0180004835.01.T01 AT4G09740 50.117 427 201 5 44 467 60 477 3.56e-141 414
MsG0180004835.01.T01 AT2G44540 47.765 425 210 7 44 462 70 488 9.87e-128 380
MsG0180004835.01.T01 AT3G43860 47.059 425 211 6 44 465 71 484 3.43e-126 376
MsG0180004835.01.T01 AT3G43860 47.059 425 211 6 44 465 71 484 3.43e-126 376
MsG0180004835.01.T01 AT2G44550 47.529 425 210 8 44 462 70 487 3.73e-126 376
MsG0180004835.01.T01 AT2G44570 47.552 429 212 8 44 465 70 492 5.73e-126 375
MsG0180004835.01.T01 AT4G39010 54.890 317 139 3 49 361 71 387 5.02e-123 364
MsG0180004835.01.T01 AT2G44560 46.963 428 215 7 44 465 70 491 2.07e-120 361
MsG0180004835.01.T01 AT1G19940 44.444 423 222 6 44 459 84 500 2.13e-115 349
MsG0180004835.01.T01 AT1G19940 44.444 423 222 6 44 459 84 500 2.13e-115 349
MsG0180004835.01.T01 AT1G48930 45.775 426 213 7 49 462 72 491 2.84e-115 352
MsG0180004835.01.T01 AT1G75680 46.062 419 213 6 44 455 93 505 3.42e-115 349
MsG0180004835.01.T01 AT1G22880 57.353 272 111 2 49 319 66 333 4.49e-102 309
MsG0180004835.01.T01 AT2G44570 44.412 340 177 7 44 377 70 403 1.71e-82 261
MsG0180004835.01.T01 AT4G38990 46.801 297 133 3 44 338 60 333 9.09e-81 254
MsG0180004835.01.T01 AT4G24260 40.406 443 226 14 50 465 156 587 1.68e-79 259
MsG0180004835.01.T01 AT1G19940 42.945 326 177 5 44 362 84 407 1.04e-77 249
MsG0180004835.01.T01 AT5G49720 40.541 444 225 15 50 465 155 587 1.68e-76 251
MsG0180004835.01.T01 AT1G65610 37.054 448 242 16 51 470 161 596 7.63e-73 242
MsG0180004835.01.T01 AT4G24260 37.941 340 177 13 50 362 156 488 1.29e-42 157
MsG0180004835.01.T01 AT4G24260 40.741 270 131 10 50 295 156 420 5.58e-41 152

Find 142 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCCTTCTCACTAAAATTT+TGG 0.161476 1:+83372382 None:intergenic
ACCAGAGTAATCACAGTAAA+AGG 0.170221 1:+83372199 None:intergenic
CATTAACTTGAATGTAATTT+AGG 0.180687 1:+83372020 None:intergenic
ATGTGATTTGGTCAAGTATT+TGG 0.246836 1:+83371516 None:intergenic
GCTGAACATTGGATCTTTCC+TGG 0.246957 1:+83371218 None:intergenic
CTGTGATTACTCTGGTTATC+AGG 0.254164 1:-83372192 MsG0180004835.01.T01:intron
CTAAATTACATTCAAGTTAA+TGG 0.258488 1:-83372019 MsG0180004835.01.T01:CDS
CTTGGTGTGTCCATGTCTTC+TGG 0.269068 1:+83372515 None:intergenic
TCAATCTTGAAAACACTTCT+TGG 0.276130 1:+83372497 None:intergenic
TTCGTTTGCTCTTTAATTCC+TGG 0.293478 1:-83371738 MsG0180004835.01.T01:CDS
CTACTAGAATGTTGGGATTA+GGG 0.293793 1:+83371168 None:intergenic
GCTAAGGTTCTGAGTCTCTT+TGG 0.294218 1:+83371460 None:intergenic
GAGTCTCTTTGGTGTTACTA+TGG 0.297437 1:+83371471 None:intergenic
AAAACTAACCTGAACATAAA+TGG 0.298563 1:+83372660 None:intergenic
TTACTACCACTATGCTTTCA+TGG 0.301130 1:-83372789 MsG0180004835.01.T01:CDS
TCATAATCTGACCGTTTATC+TGG 0.305225 1:+83371107 None:intergenic
AAGGTAGCTTCCCTGATCTT+TGG 0.305903 1:+83373023 None:intergenic
CCTACTAGAATGTTGGGATT+AGG 0.337619 1:+83371167 None:intergenic
TTCTTTGAAGGCCAAAGATC+AGG 0.342290 1:-83373034 MsG0180004835.01.T01:CDS
TTCAAAGAAGAGAATGGATT+TGG 0.342834 1:+83373048 None:intergenic
AAATCCATTCTCTTCTTTGA+AGG 0.351496 1:-83373046 MsG0180004835.01.T01:CDS
ATGTTAAACTATGTATGATT+GGG 0.356814 1:-83370820 MsG0180004835.01.T01:three_prime_UTR
CACATCCACTAGCTTCTTAC+TGG 0.357156 1:-83371548 MsG0180004835.01.T01:CDS
ACCAGCATCTCCAACTTGTT+TGG 0.360579 1:-83371000 MsG0180004835.01.T01:three_prime_UTR
AATGTTAAACTATGTATGAT+TGG 0.361900 1:-83370821 MsG0180004835.01.T01:three_prime_UTR
TGCTCTTTAATTCCTGGAGC+TGG 0.363000 1:-83371732 MsG0180004835.01.T01:CDS
CAAGACATTCTCTGGTTAGA+AGG 0.391243 1:+83373004 None:intergenic
TCCAAACACCATTTATGTTC+AGG 0.394784 1:-83372668 MsG0180004835.01.T01:intron
TCCAAACAAGTTGGAGATGC+TGG 0.394971 1:+83370999 None:intergenic
TTGTACCTGTTTCTTGGCTA+AGG 0.398642 1:+83371444 None:intergenic
GTAGGTTGGAGATGCTAAAA+AGG 0.402930 1:-83372558 MsG0180004835.01.T01:intron
GCAGAGTTTGACAACACATT+TGG 0.404186 1:-83371980 MsG0180004835.01.T01:CDS
ATGTACAATGTAGATTGATT+TGG 0.410845 1:-83372866 MsG0180004835.01.T01:intron
TTGTTAGGATGAGTTGTTGT+GGG 0.416277 1:-83372083 MsG0180004835.01.T01:intron
ACCTGAACATAAATGGTGTT+TGG 0.417646 1:+83372667 None:intergenic
CTAGTAGGTGCTGTTGTTGG+AGG 0.421002 1:-83371152 MsG0180004835.01.T01:CDS
GCTTATCTTGCACACTCATT+CGG 0.425169 1:-83371035 MsG0180004835.01.T01:CDS
GAGGACCAGATCAGCATGAT+AGG 0.431517 1:-83371133 MsG0180004835.01.T01:CDS
GCTGGTGACAATGTCAAGTT+TGG 0.431994 1:-83372826 MsG0180004835.01.T01:CDS
GGCGATGGAGTGGGAAGGCA+TGG 0.435448 1:+83373113 None:intergenic
CCTGGGTGTACAGCCATTGA+AGG 0.436838 1:+83371236 None:intergenic
TTGGCCTTCAAAGAAGAGAA+TGG 0.439709 1:+83373042 None:intergenic
CCCCTGTGGTGTATCCTTTG+TGG 0.441573 1:+83371269 None:intergenic
ATTCTAGTAGGTGCTGTTGT+TGG 0.445902 1:-83371155 MsG0180004835.01.T01:CDS
CAAGTTAATGGTCAAATCCT+AGG 0.446620 1:-83372007 MsG0180004835.01.T01:CDS
TGTTAGGTGGATTACTTGCT+AGG 0.447232 1:-83371341 MsG0180004835.01.T01:intron
GTTTGACAACACATTTGGTT+GGG 0.449029 1:-83371975 MsG0180004835.01.T01:CDS
GTTGGAGGGTATTATGATGC+TGG 0.454607 1:-83372844 MsG0180004835.01.T01:CDS
CTGAACATTGGATCTTTCCT+GGG 0.455368 1:+83371219 None:intergenic
CAAAGTGAGGGTGGTGGCGA+TGG 0.456403 1:+83373098 None:intergenic
ACGCACAACAGAATGTGATT+TGG 0.456608 1:+83371504 None:intergenic
GGAAACCTATCATGCTGATC+TGG 0.457186 1:+83371128 None:intergenic
TCATGGAGTGTTATTGACTT+TGG 0.460500 1:-83372772 MsG0180004835.01.T01:CDS
TATGTTAATGCACCACTTGT+GGG 0.460697 1:-83371065 MsG0180004835.01.T01:CDS
TTTAGGAATTTCTAGTTCAA+AGG 0.464717 1:-83371800 MsG0180004835.01.T01:intron
TTAGGAATTTCTAGTTCAAA+GGG 0.464908 1:-83371799 MsG0180004835.01.T01:intron
CAGAACCTTAGCCAAGAAAC+AGG 0.467748 1:-83371449 MsG0180004835.01.T01:intron
AGTTGTTGTGGGGTGCTGCT+TGG 0.467899 1:-83372072 MsG0180004835.01.T01:CDS
ATGATAGGTTTCCAGATAAA+CGG 0.470251 1:-83371118 MsG0180004835.01.T01:CDS
ATGTCATACATGGTGGGGTA+TGG 0.473593 1:-83371302 MsG0180004835.01.T01:CDS
GGGATCATCACTTCCTTCAA+TGG 0.474143 1:-83371249 MsG0180004835.01.T01:CDS
GCAGAAGAGGATCCAGCTCC+AGG 0.475179 1:+83371720 None:intergenic
ACCATGTATGACATCTTCAA+TGG 0.476433 1:+83371311 None:intergenic
CGAATAGCTTCTCTAGCATT+AGG 0.477541 1:+83372727 None:intergenic
GGAAAGATCCAATGTTCAGC+AGG 0.479066 1:-83371215 MsG0180004835.01.T01:CDS
GGTGCATTAACATAAGTTGC+TGG 0.482529 1:+83371074 None:intergenic
ATGTAGATTGATTTGGTTGG+AGG 0.482748 1:-83372859 MsG0180004835.01.T01:intron
TGAGGGTGGTGGCGATGGAG+TGG 0.482898 1:+83373103 None:intergenic
ACAGCACCTACTAGAATGTT+GGG 0.484006 1:+83371161 None:intergenic
AGCAAACGAAATTGTCTGAA+TGG 0.484341 1:+83371751 None:intergenic
TGAATGTAATTTAGGTACAT+TGG 0.486981 1:+83372028 None:intergenic
CCTAATCCCAACATTCTAGT+AGG 0.487578 1:-83371167 MsG0180004835.01.T01:CDS
TGCTAGAGAAGCTATTCGTT+GGG 0.488469 1:-83372722 MsG0180004835.01.T01:CDS
CACTGAACCCTGCTGAACAT+TGG 0.488575 1:+83371207 None:intergenic
AACAGCACCTACTAGAATGT+TGG 0.493607 1:+83371160 None:intergenic
AGTTTGACAACACATTTGGT+TGG 0.497629 1:-83371976 MsG0180004835.01.T01:CDS
TGTCAAACTCTGCAGCTCCT+AGG 0.498646 1:+83371990 None:intergenic
GAGGGTGGTGGCGATGGAGT+GGG 0.499968 1:+83373104 None:intergenic
TGGAGTGTTATTGACTTTGG+TGG 0.501192 1:-83372769 MsG0180004835.01.T01:CDS
TTATGTTAATGCACCACTTG+TGG 0.503544 1:-83371066 MsG0180004835.01.T01:CDS
AAGATTGATGCAAACGCACC+TGG 0.504835 1:-83372482 MsG0180004835.01.T01:CDS
AAAATCCCTCCATGACTACA+AGG 0.507819 1:-83371775 MsG0180004835.01.T01:CDS
ATGCTAGAGAAGCTATTCGT+TGG 0.512170 1:-83372723 MsG0180004835.01.T01:CDS
GGAGTGTTATTGACTTTGGT+GGG 0.512471 1:-83372768 MsG0180004835.01.T01:CDS
GGTTTCAAGACATTGCTGTA+AGG 0.515521 1:+83372233 None:intergenic
AGCAAGGATACTTCTTTCAA+AGG 0.517132 1:-83371936 MsG0180004835.01.T01:intron
TACTAGAATGTTGGGATTAG+GGG 0.517279 1:+83371169 None:intergenic
CTGAATGGCCCTTGTAGTCA+TGG 0.518588 1:+83371766 None:intergenic
CTTCTAACCAGAGAATGTCT+TGG 0.519924 1:-83373003 MsG0180004835.01.T01:CDS
CCAGAGTAATCACAGTAAAA+GGG 0.524276 1:+83372200 None:intergenic
GGTTGGGATAACAAACATGT+TGG 0.527280 1:-83371959 MsG0180004835.01.T01:CDS
TGTATCCTTTGTGGATACCT+TGG 0.528138 1:+83371278 None:intergenic
AGCAGCTGCTAATGCTGCAG+CGG 0.530570 1:+83372439 None:intergenic
TTTAGTGAGAAGGGCTATCA+GGG 0.533210 1:-83372375 MsG0180004835.01.T01:intron
TCAGATTCATCCAAACAAGT+TGG 0.535707 1:+83370990 None:intergenic
CTGGTCTCTCCCAACAAGCA+TGG 0.538685 1:+83372534 None:intergenic
TCTTTGAAGGCCAAAGATCA+GGG 0.542600 1:-83373033 MsG0180004835.01.T01:CDS
CCATGTATGACATCTTCAAT+GGG 0.544092 1:+83371312 None:intergenic
TGTAGATTGATTTGGTTGGA+GGG 0.545437 1:-83372858 MsG0180004835.01.T01:intron
CCCATTGAAGATGTCATACA+TGG 0.547188 1:-83371312 MsG0180004835.01.T01:CDS
TGTTAAACTATGTATGATTG+GGG 0.548081 1:-83370819 MsG0180004835.01.T01:three_prime_UTR
CAGTAAAAGGGACAGACAAA+GGG 0.548513 1:+83372212 None:intergenic
GACTTTGGTGGGTTGATGAA+AGG 0.560396 1:-83372757 MsG0180004835.01.T01:CDS
ACAGTAAAAGGGACAGACAA+AGG 0.562752 1:+83372211 None:intergenic
CTTGTTAGGATGAGTTGTTG+TGG 0.568257 1:-83372084 MsG0180004835.01.T01:intron
ACAATGTAGATTGATTTGGT+TGG 0.568750 1:-83372862 MsG0180004835.01.T01:intron
GCGATGGAGTGGGAAGGCAT+GGG 0.569614 1:+83373114 None:intergenic
ATGTCTTGGAGAAAAGACTC+TGG 0.573843 1:-83372989 MsG0180004835.01.T01:intron
ATCCACAAAGGATACACCAC+AGG 0.581594 1:-83371271 MsG0180004835.01.T01:CDS
TTGAAGATGTCATACATGGT+GGG 0.582564 1:-83371308 MsG0180004835.01.T01:CDS
TAAGCAAGTGTTCCCACAAG+TGG 0.582903 1:+83371053 None:intergenic
TGGGGTATATTGTGCAGAAG+AGG 0.588731 1:+83371707 None:intergenic
TCTGCAGCAACTTCAGAACC+AGG 0.590338 1:+83372464 None:intergenic
TTGGGAGAGACCAGAAGACA+TGG 0.597392 1:-83372525 MsG0180004835.01.T01:CDS
TCACATTCTGTTGTGCGTTG+TGG 0.597476 1:-83371499 MsG0180004835.01.T01:CDS
CATTCTGTTGTGCGTTGTGG+TGG 0.598006 1:-83371496 MsG0180004835.01.T01:CDS
TGTGAGTGGCAAAGTGAGGG+TGG 0.602326 1:+83373089 None:intergenic
TGAAGATGTCATACATGGTG+GGG 0.604622 1:-83371307 MsG0180004835.01.T01:CDS
AACACTCCATGAAAGCATAG+TGG 0.607639 1:+83372783 None:intergenic
ATAACAAACATGTTGGAGCA+AGG 0.610200 1:-83371952 MsG0180004835.01.T01:CDS
CCTTCAATGGCTGTACACCC+AGG 0.614449 1:-83371236 MsG0180004835.01.T01:CDS
AGCTACCAGTAAGAAGCTAG+TGG 0.617412 1:+83371543 None:intergenic
TCTTCTGCACAATATACCCC+AGG 0.617991 1:-83371705 MsG0180004835.01.T01:intron
GTGGTGGCGATGGAGTGGGA+AGG 0.619272 1:+83373108 None:intergenic
ATAGTGGTAGTAAAAGCCAT+AGG 0.628059 1:+83372799 None:intergenic
ATGGCCCTTGTAGTCATGGA+GGG 0.631433 1:+83371770 None:intergenic
TGTTAGGATGAGTTGTTGTG+GGG 0.636308 1:-83372082 MsG0180004835.01.T01:intron
ACAATGAGTAAGTTTCATTG+TGG 0.638295 1:-83370866 MsG0180004835.01.T01:three_prime_UTR
ATTGAAGATGTCATACATGG+TGG 0.647567 1:-83371309 MsG0180004835.01.T01:CDS
ACATGGTGGGGTATGGACCA+AGG 0.656858 1:-83371295 MsG0180004835.01.T01:CDS
TAGTTGTGAGTGGCAAAGTG+AGG 0.663280 1:+83373085 None:intergenic
AATGGCCCTTGTAGTCATGG+AGG 0.663344 1:+83371769 None:intergenic
GAAAGATCCAATGTTCAGCA+GGG 0.663959 1:-83371214 MsG0180004835.01.T01:CDS
AGTTGTGAGTGGCAAAGTGA+GGG 0.678935 1:+83373086 None:intergenic
GAGTGGCAAAGTGAGGGTGG+TGG 0.679747 1:+83373092 None:intergenic
AGCATCTCTGTAGTTGTGAG+TGG 0.685689 1:+83373075 None:intergenic
ATGGACCAAGGTATCCACAA+AGG 0.706125 1:-83371283 MsG0180004835.01.T01:CDS
TCCACAAAGGATACACCACA+GGG 0.706214 1:-83371270 MsG0180004835.01.T01:CDS
CAGTTTGCTGATCAACACAG+AGG 0.707543 1:-83372257 MsG0180004835.01.T01:CDS
AAATCCCTCCATGACTACAA+GGG 0.708720 1:-83371774 MsG0180004835.01.T01:CDS
AAGGAAGTGATGATCCCCTG+TGG 0.807933 1:+83371255 None:intergenic
CCACAAAGGATACACCACAG+GGG 0.846463 1:-83371269 MsG0180004835.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTCATTATTTCAATT+AGG + Chr1:83372449-83372468 None:intergenic 10.0%
!!! TTTTTATATTTTCTCTAATT+TGG - Chr1:83372915-83372934 MsG0180004835.01.T01:intron 10.0%
!!! TGATTTTGATTAATTTTTGT+TGG - Chr1:83372491-83372510 MsG0180004835.01.T01:CDS 15.0%
!! AATGTTAAACTATGTATGAT+TGG - Chr1:83373041-83373060 MsG0180004835.01.T01:CDS 20.0%
!! ATGTTAAACTATGTATGATT+GGG - Chr1:83373042-83373061 MsG0180004835.01.T01:CDS 20.0%
!! GATTTATGCAACAAAAAAAA+AGG + Chr1:83371551-83371570 None:intergenic 20.0%
!!! ATATCTTTGTTGCTTATTTT+TGG - Chr1:83370968-83370987 MsG0180004835.01.T01:three_prime_UTR 20.0%
!!! ATTTTGTTAAGTAGAAAACA+TGG - Chr1:83371250-83371269 MsG0180004835.01.T01:CDS 20.0%
!!! CATTAACTTGAATGTAATTT+AGG + Chr1:83371845-83371864 None:intergenic 20.0%
!!! CTAAATTACATTCAAGTTAA+TGG - Chr1:83371843-83371862 MsG0180004835.01.T01:intron 20.0%
!!! TTAGTACTAGTACTTTTAAT+TGG - Chr1:83372938-83372957 MsG0180004835.01.T01:intron 20.0%
!!! TTTTGTTGGTATTTTTTGTT+AGG - Chr1:83372505-83372524 MsG0180004835.01.T01:CDS 20.0%
! AAAACTAACCTGAACATAAA+TGG + Chr1:83371205-83371224 None:intergenic 25.0%
! AATGTTTGTTTGATACTATG+TGG + Chr1:83371964-83371983 None:intergenic 25.0%
! ATGTACAATGTAGATTGATT+TGG - Chr1:83370996-83371015 MsG0180004835.01.T01:three_prime_UTR 25.0%
! TGAATGTAATTTAGGTACAT+TGG + Chr1:83371837-83371856 None:intergenic 25.0%
! TGTTAAACTATGTATGATTG+GGG - Chr1:83373043-83373062 MsG0180004835.01.T01:CDS 25.0%
!!! AACATTGTTTTGTTTGTTTG+TGG - Chr1:83372030-83372049 MsG0180004835.01.T01:CDS 25.0%
!!! ACTAAAATTTTGGAGTATGT+TGG + Chr1:83371473-83371492 None:intergenic 25.0%
!!! ATTATAGTACTTTTGACTGA+TGG - Chr1:83371744-83371763 MsG0180004835.01.T01:CDS 25.0%
!!! GGTAAATGAGTTTGATTTTT+GGG - Chr1:83371271-83371290 MsG0180004835.01.T01:CDS 25.0%
!!! TATCTCAGTTTTAACTCTAT+TGG - Chr1:83372198-83372217 MsG0180004835.01.T01:CDS 25.0%
!!! TGGTAAATGAGTTTGATTTT+TGG - Chr1:83371270-83371289 MsG0180004835.01.T01:CDS 25.0%
!!! TTAGGAATTTCTAGTTCAAA+GGG - Chr1:83372063-83372082 MsG0180004835.01.T01:CDS 25.0%
!!! TTATAGTACTTTTGACTGAT+GGG - Chr1:83371745-83371764 MsG0180004835.01.T01:CDS 25.0%
!!! TTTAGGAATTTCTAGTTCAA+AGG - Chr1:83372062-83372081 MsG0180004835.01.T01:CDS 25.0%
AAAACTGAGATAGAAGAAAG+AGG + Chr1:83372190-83372209 None:intergenic 30.0%
AAACTGAGATAGAAGAAAGA+GGG + Chr1:83372189-83372208 None:intergenic 30.0%
AAATCCATTCTCTTCTTTGA+AGG - Chr1:83370816-83370835 MsG0180004835.01.T01:three_prime_UTR 30.0%
ACAATGAGTAAGTTTCATTG+TGG - Chr1:83372996-83373015 MsG0180004835.01.T01:CDS 30.0%
AGTATGACTCAAGTAAAAAC+TGG + Chr1:83371720-83371739 None:intergenic 30.0%
ATGATAGGTTTCCAGATAAA+CGG - Chr1:83372744-83372763 MsG0180004835.01.T01:CDS 30.0%
GATACTATGTGGTGAAATTT+AGG + Chr1:83371953-83371972 None:intergenic 30.0%
TCAATCTTGAAAACACTTCT+TGG + Chr1:83371368-83371387 None:intergenic 30.0%
TTTGCAGAAATGTTTGTTTG+TGG + Chr1:83371990-83372009 None:intergenic 30.0%
! AGTTTTTCTTCTTCTGTTCA+TGG - Chr1:83371219-83371238 MsG0180004835.01.T01:CDS 30.0%
! TTCAAAGAAGAGAATGGATT+TGG + Chr1:83370817-83370836 None:intergenic 30.0%
!! ACAATGTAGATTGATTTGGT+TGG - Chr1:83371000-83371019 MsG0180004835.01.T01:three_prime_UTR 30.0%
!! ACTCCAAAATTTTAGTGAGA+AGG - Chr1:83371477-83371496 MsG0180004835.01.T01:CDS 30.0%
!! ATGTGATTTGGTCAAGTATT+TGG + Chr1:83372349-83372368 None:intergenic 30.0%
!! CTCCAAAATTTTAGTGAGAA+GGG - Chr1:83371478-83371497 MsG0180004835.01.T01:CDS 30.0%
!! CTGAGATTGTGTTTGTTTTT+GGG - Chr1:83371570-83371589 MsG0180004835.01.T01:CDS 30.0%
!! GTATTTTTGTACCTGTTTCT+TGG + Chr1:83372427-83372446 None:intergenic 30.0%
!! TCTGAGATTGTGTTTGTTTT+TGG - Chr1:83371569-83371588 MsG0180004835.01.T01:CDS 30.0%
!! TTAACTCTATTGGTTTCATG+TGG - Chr1:83372208-83372227 MsG0180004835.01.T01:CDS 30.0%
!!! GTTTGTGGTTTTGTGATTTT+AGG - Chr1:83372045-83372064 MsG0180004835.01.T01:CDS 30.0%
!!! TGAGATTGTGTTTGTTTTTG+GGG - Chr1:83371571-83371590 MsG0180004835.01.T01:CDS 30.0%
!!! TGTTGGTATTTTTTGTTAGG+TGG - Chr1:83372508-83372527 MsG0180004835.01.T01:CDS 30.0%
!!! TTTTTGGGTTTTTTGTTCGT+AGG - Chr1:83371286-83371305 MsG0180004835.01.T01:CDS 30.0%
ACCAGAGTAATCACAGTAAA+AGG + Chr1:83371666-83371685 None:intergenic 35.0%
ACCATGTATGACATCTTCAA+TGG + Chr1:83372554-83372573 None:intergenic 35.0%
ACCTGAACATAAATGGTGTT+TGG + Chr1:83371198-83371217 None:intergenic 35.0%
AGCAAACGAAATTGTCTGAA+TGG + Chr1:83372114-83372133 None:intergenic 35.0%
AGCAAGGATACTTCTTTCAA+AGG - Chr1:83371926-83371945 MsG0180004835.01.T01:intron 35.0%
AGTTTGACAACACATTTGGT+TGG - Chr1:83371886-83371905 MsG0180004835.01.T01:intron 35.0%
ATAACAAACATGTTGGAGCA+AGG - Chr1:83371910-83371929 MsG0180004835.01.T01:intron 35.0%
ATAGTGGTAGTAAAAGCCAT+AGG + Chr1:83371066-83371085 None:intergenic 35.0%
ATTGAAGATGTCATACATGG+TGG - Chr1:83372553-83372572 MsG0180004835.01.T01:CDS 35.0%
CAAGTTAATGGTCAAATCCT+AGG - Chr1:83371855-83371874 MsG0180004835.01.T01:intron 35.0%
CCAGAGTAATCACAGTAAAA+GGG + Chr1:83371665-83371684 None:intergenic 35.0%
CCATGTATGACATCTTCAAT+GGG + Chr1:83372553-83372572 None:intergenic 35.0%
CTACTAGAATGTTGGGATTA+GGG + Chr1:83372697-83372716 None:intergenic 35.0%
GCTCAAAAACTGTTACAACT+TGG + Chr1:83372235-83372254 None:intergenic 35.0%
GTTTGACAACACATTTGGTT+GGG - Chr1:83371887-83371906 MsG0180004835.01.T01:intron 35.0%
TAAAAAGGACCATGCTTGTT+GGG - Chr1:83371319-83371338 MsG0180004835.01.T01:CDS 35.0%
TACTAGAATGTTGGGATTAG+GGG + Chr1:83372696-83372715 None:intergenic 35.0%
TATGTTAATGCACCACTTGT+GGG - Chr1:83372797-83372816 MsG0180004835.01.T01:CDS 35.0%
TCAAGTAAAAACTGGCACAA+TGG + Chr1:83371712-83371731 None:intergenic 35.0%
TCAGATTCATCCAAACAAGT+TGG + Chr1:83372875-83372894 None:intergenic 35.0%
TCATAATCTGACCGTTTATC+TGG + Chr1:83372758-83372777 None:intergenic 35.0%
TCCAAACACCATTTATGTTC+AGG - Chr1:83371194-83371213 MsG0180004835.01.T01:CDS 35.0%
TTACTACCACTATGCTTTCA+TGG - Chr1:83371073-83371092 MsG0180004835.01.T01:CDS 35.0%
TTATGTTAATGCACCACTTG+TGG - Chr1:83372796-83372815 MsG0180004835.01.T01:CDS 35.0%
TTCGTTTGCTCTTTAATTCC+TGG - Chr1:83372124-83372143 MsG0180004835.01.T01:intron 35.0%
TTGAAGATGTCATACATGGT+GGG - Chr1:83372554-83372573 MsG0180004835.01.T01:CDS 35.0%
TTGAGCTTGTGAAACTTTAC+AGG - Chr1:83372249-83372268 MsG0180004835.01.T01:CDS 35.0%
TTGTTAGGATGAGTTGTTGT+GGG - Chr1:83371779-83371798 MsG0180004835.01.T01:CDS 35.0%
! AGCCCTTCTCACTAAAATTT+TGG + Chr1:83371483-83371502 None:intergenic 35.0%
!! ATGTAGATTGATTTGGTTGG+AGG - Chr1:83371003-83371022 MsG0180004835.01.T01:three_prime_UTR 35.0%
!! TCATGGAGTGTTATTGACTT+TGG - Chr1:83371090-83371109 MsG0180004835.01.T01:CDS 35.0%
!! TGGGTTTGTAATGACTTGTT+AGG - Chr1:83371764-83371783 MsG0180004835.01.T01:CDS 35.0%
!! TGTAGATTGATTTGGTTGGA+GGG - Chr1:83371004-83371023 MsG0180004835.01.T01:three_prime_UTR 35.0%
!!! TGTCAAGTTTGGTTTTCCTA+TGG - Chr1:83371047-83371066 MsG0180004835.01.T01:CDS 35.0%
!!! TGTGTTTGTTTTTGGGGTTT+AGG - Chr1:83371577-83371596 MsG0180004835.01.T01:CDS 35.0%
AAAATCCCTCCATGACTACA+AGG - Chr1:83372087-83372106 MsG0180004835.01.T01:intron 40.0%
AAATCCCTCCATGACTACAA+GGG - Chr1:83372088-83372107 MsG0180004835.01.T01:intron 40.0%
AACAGCACCTACTAGAATGT+TGG + Chr1:83372705-83372724 None:intergenic 40.0%
ACAGCACCTACTAGAATGTT+GGG + Chr1:83372704-83372723 None:intergenic 40.0%
ACAGTAAAAGGGACAGACAA+AGG + Chr1:83371654-83371673 None:intergenic 40.0%
ACGCACAACAGAATGTGATT+TGG + Chr1:83372361-83372380 None:intergenic 40.0%
AGCTTGTGAAACTTTACAGG+TGG - Chr1:83372252-83372271 MsG0180004835.01.T01:CDS 40.0%
ATGCTAGAGAAGCTATTCGT+TGG - Chr1:83371139-83371158 MsG0180004835.01.T01:CDS 40.0%
ATGTCTTGGAGAAAAGACTC+TGG - Chr1:83370873-83370892 MsG0180004835.01.T01:three_prime_UTR 40.0%
CAAGACATTCTCTGGTTAGA+AGG + Chr1:83370861-83370880 None:intergenic 40.0%
CAGTAAAAGGGACAGACAAA+GGG + Chr1:83371653-83371672 None:intergenic 40.0%
CCCATTGAAGATGTCATACA+TGG - Chr1:83372550-83372569 MsG0180004835.01.T01:CDS 40.0%
CCTAATCCCAACATTCTAGT+AGG - Chr1:83372695-83372714 MsG0180004835.01.T01:CDS 40.0%
CCTACTAGAATGTTGGGATT+AGG + Chr1:83372698-83372717 None:intergenic 40.0%
CGAATAGCTTCTCTAGCATT+AGG + Chr1:83371138-83371157 None:intergenic 40.0%
CTAAAAAGGACCATGCTTGT+TGG - Chr1:83371318-83371337 MsG0180004835.01.T01:CDS 40.0%
CTGAACATTGGATCTTTCCT+GGG + Chr1:83372646-83372665 None:intergenic 40.0%
CTGTGATTACTCTGGTTATC+AGG - Chr1:83371670-83371689 MsG0180004835.01.T01:intron 40.0%
CTTCTAACCAGAGAATGTCT+TGG - Chr1:83370859-83370878 MsG0180004835.01.T01:three_prime_UTR 40.0%
CTTGTTAGGATGAGTTGTTG+TGG - Chr1:83371778-83371797 MsG0180004835.01.T01:CDS 40.0%
GAAAGATCCAATGTTCAGCA+GGG - Chr1:83372648-83372667 MsG0180004835.01.T01:intron 40.0%
GCAGAGTTTGACAACACATT+TGG - Chr1:83371882-83371901 MsG0180004835.01.T01:intron 40.0%
GCTTATCTTGCACACTCATT+CGG - Chr1:83372827-83372846 MsG0180004835.01.T01:CDS 40.0%
GCTTGTGAAACTTTACAGGT+GGG - Chr1:83372253-83372272 MsG0180004835.01.T01:CDS 40.0%
GGTGCATTAACATAAGTTGC+TGG + Chr1:83372791-83372810 None:intergenic 40.0%
GGTTGGGATAACAAACATGT+TGG - Chr1:83371903-83371922 MsG0180004835.01.T01:intron 40.0%
GGTTTCAAGACATTGCTGTA+AGG + Chr1:83371632-83371651 None:intergenic 40.0%
TGAAGATGTCATACATGGTG+GGG - Chr1:83372555-83372574 MsG0180004835.01.T01:CDS 40.0%
TGCTAGAGAAGCTATTCGTT+GGG - Chr1:83371140-83371159 MsG0180004835.01.T01:CDS 40.0%
TGTATCCTTTGTGGATACCT+TGG + Chr1:83372587-83372606 None:intergenic 40.0%
TGTTAGGATGAGTTGTTGTG+GGG - Chr1:83371780-83371799 MsG0180004835.01.T01:CDS 40.0%
TTTAGTGAGAAGGGCTATCA+GGG - Chr1:83371487-83371506 MsG0180004835.01.T01:CDS 40.0%
! AACACTCCATGAAAGCATAG+TGG + Chr1:83371082-83371101 None:intergenic 40.0%
! CCCTTTTACTGTGATTACTC+TGG - Chr1:83371662-83371681 MsG0180004835.01.T01:intron 40.0%
! CTTTTCTCCAAGACATTCTC+TGG + Chr1:83370869-83370888 None:intergenic 40.0%
! GTAGGTTGGAGATGCTAAAA+AGG - Chr1:83371304-83371323 MsG0180004835.01.T01:CDS 40.0%
! TCTTTGAAGGCCAAAGATCA+GGG - Chr1:83370829-83370848 MsG0180004835.01.T01:three_prime_UTR 40.0%
! TTCTTTGAAGGCCAAAGATC+AGG - Chr1:83370828-83370847 MsG0180004835.01.T01:three_prime_UTR 40.0%
! TTGGCCTTCAAAGAAGAGAA+TGG + Chr1:83370823-83370842 None:intergenic 40.0%
! TTGTACCTGTTTCTTGGCTA+AGG + Chr1:83372421-83372440 None:intergenic 40.0%
! TTTTAGTGAGAAGGGCTATC+AGG - Chr1:83371486-83371505 MsG0180004835.01.T01:CDS 40.0%
!! ATTCTAGTAGGTGCTGTTGT+TGG - Chr1:83372707-83372726 MsG0180004835.01.T01:CDS 40.0%
!! GAGTCTCTTTGGTGTTACTA+TGG + Chr1:83372394-83372413 None:intergenic 40.0%
!! GGAGTGTTATTGACTTTGGT+GGG - Chr1:83371094-83371113 MsG0180004835.01.T01:CDS 40.0%
!! TGGAGTGTTATTGACTTTGG+TGG - Chr1:83371093-83371112 MsG0180004835.01.T01:CDS 40.0%
!! TGTTAGGTGGATTACTTGCT+AGG - Chr1:83372521-83372540 MsG0180004835.01.T01:CDS 40.0%
!!! TGGGTTTTTTGTTCGTAGGT+TGG - Chr1:83371290-83371309 MsG0180004835.01.T01:CDS 40.0%
AAAGACTCTGGTCTCTCTGA+TGG - Chr1:83370885-83370904 MsG0180004835.01.T01:three_prime_UTR 45.0%
AAGAAAGAGGGACCTTACCT+GGG + Chr1:83372177-83372196 None:intergenic 45.0%
AAGATTGATGCAAACGCACC+TGG - Chr1:83371380-83371399 MsG0180004835.01.T01:intron 45.0%
AAGGTAGCTTCCCTGATCTT+TGG + Chr1:83370842-83370861 None:intergenic 45.0%
AGCATCTCTGTAGTTGTGAG+TGG + Chr1:83370790-83370809 None:intergenic 45.0%
AGCTACCAGTAAGAAGCTAG+TGG + Chr1:83372322-83372341 None:intergenic 45.0%
AGTTGTGAGTGGCAAAGTGA+GGG + Chr1:83370779-83370798 None:intergenic 45.0%
ATCCACAAAGGATACACCAC+AGG - Chr1:83372591-83372610 MsG0180004835.01.T01:intron 45.0%
CAGAACCTTAGCCAAGAAAC+AGG - Chr1:83372413-83372432 MsG0180004835.01.T01:CDS 45.0%
GCTGAACATTGGATCTTTCC+TGG + Chr1:83372647-83372666 None:intergenic 45.0%
GCTGGTGACAATGTCAAGTT+TGG - Chr1:83371036-83371055 MsG0180004835.01.T01:CDS 45.0%
GGAAACCTATCATGCTGATC+TGG + Chr1:83372737-83372756 None:intergenic 45.0%
GGAAAGATCCAATGTTCAGC+AGG - Chr1:83372647-83372666 MsG0180004835.01.T01:intron 45.0%
GGGATCATCACTTCCTTCAA+TGG - Chr1:83372613-83372632 MsG0180004835.01.T01:intron 45.0%
TAAGCAAGTGTTCCCACAAG+TGG + Chr1:83372812-83372831 None:intergenic 45.0%
TAGTTGTGAGTGGCAAAGTG+AGG + Chr1:83370780-83370799 None:intergenic 45.0%
TCACATTCTGTTGTGCGTTG+TGG - Chr1:83372363-83372382 MsG0180004835.01.T01:intron 45.0%
TCCACAAAGGATACACCACA+GGG - Chr1:83372592-83372611 MsG0180004835.01.T01:intron 45.0%
TCTTCTGCACAATATACCCC+AGG - Chr1:83372157-83372176 MsG0180004835.01.T01:intron 45.0%
TGCACAATATACCCCAGGTA+AGG - Chr1:83372162-83372181 MsG0180004835.01.T01:intron 45.0%
TGCTCTTTAATTCCTGGAGC+TGG - Chr1:83372130-83372149 MsG0180004835.01.T01:intron 45.0%
TGGGGTATATTGTGCAGAAG+AGG + Chr1:83372158-83372177 None:intergenic 45.0%
! ACCAGCATCTCCAACTTGTT+TGG - Chr1:83372862-83372881 MsG0180004835.01.T01:intron 45.0%
! ATGGACCAAGGTATCCACAA+AGG - Chr1:83372579-83372598 MsG0180004835.01.T01:intron 45.0%
! ATGTCATACATGGTGGGGTA+TGG - Chr1:83372560-83372579 MsG0180004835.01.T01:intron 45.0%
! CACATCCACTAGCTTCTTAC+TGG - Chr1:83372314-83372333 MsG0180004835.01.T01:intron 45.0%
! TCCAAACAAGTTGGAGATGC+TGG + Chr1:83372866-83372885 None:intergenic 45.0%
!! CAGTTTGCTGATCAACACAG+AGG - Chr1:83371605-83371624 MsG0180004835.01.T01:intron 45.0%
!! GACTTTGGTGGGTTGATGAA+AGG - Chr1:83371105-83371124 MsG0180004835.01.T01:CDS 45.0%
!! GCTAAGGTTCTGAGTCTCTT+TGG + Chr1:83372405-83372424 None:intergenic 45.0%
!! GTTGGAGGGTATTATGATGC+TGG - Chr1:83371018-83371037 MsG0180004835.01.T01:exon 45.0%
AAGGAAGTGATGATCCCCTG+TGG + Chr1:83372610-83372629 None:intergenic 50.0%
AATGGCCCTTGTAGTCATGG+AGG + Chr1:83372096-83372115 None:intergenic 50.0%
AGAAAGAGGGACCTTACCTG+GGG + Chr1:83372176-83372195 None:intergenic 50.0%
ATGGCCCTTGTAGTCATGGA+GGG + Chr1:83372095-83372114 None:intergenic 50.0%
CACTGAACCCTGCTGAACAT+TGG + Chr1:83372658-83372677 None:intergenic 50.0%
CATTCTGTTGTGCGTTGTGG+TGG - Chr1:83372366-83372385 MsG0180004835.01.T01:intron 50.0%
CCACAAAGGATACACCACAG+GGG - Chr1:83372593-83372612 MsG0180004835.01.T01:intron 50.0%
CTGAATGGCCCTTGTAGTCA+TGG + Chr1:83372099-83372118 None:intergenic 50.0%
GAAGAAAGAGGGACCTTACC+TGG + Chr1:83372178-83372197 None:intergenic 50.0%
GAGGACCAGATCAGCATGAT+AGG - Chr1:83372729-83372748 MsG0180004835.01.T01:CDS 50.0%
TCTGCAGCAACTTCAGAACC+AGG + Chr1:83371401-83371420 None:intergenic 50.0%
TGTCAAACTCTGCAGCTCCT+AGG + Chr1:83371875-83371894 None:intergenic 50.0%
TTGGGAGAGACCAGAAGACA+TGG - Chr1:83371337-83371356 MsG0180004835.01.T01:CDS 50.0%
! CTTGGTGTGTCCATGTCTTC+TGG + Chr1:83371350-83371369 None:intergenic 50.0%
!! CTAGTAGGTGCTGTTGTTGG+AGG - Chr1:83372710-83372729 MsG0180004835.01.T01:CDS 50.0%
AGCAGCTGCTAATGCTGCAG+CGG + Chr1:83371426-83371445 None:intergenic 55.0%
CCCCTGTGGTGTATCCTTTG+TGG + Chr1:83372596-83372615 None:intergenic 55.0%
CCTGGGTGTACAGCCATTGA+AGG + Chr1:83372629-83372648 None:intergenic 55.0%
CCTTCAATGGCTGTACACCC+AGG - Chr1:83372626-83372645 MsG0180004835.01.T01:intron 55.0%
CTGGTCTCTCCCAACAAGCA+TGG + Chr1:83371331-83371350 None:intergenic 55.0%
TGTGAGTGGCAAAGTGAGGG+TGG + Chr1:83370776-83370795 None:intergenic 55.0%
! ACATGGTGGGGTATGGACCA+AGG - Chr1:83372567-83372586 MsG0180004835.01.T01:intron 55.0%
!! AGTTGTTGTGGGGTGCTGCT+TGG - Chr1:83371790-83371809 MsG0180004835.01.T01:CDS 55.0%
GAGTGGCAAAGTGAGGGTGG+TGG + Chr1:83370773-83370792 None:intergenic 60.0%
GCAGAAGAGGATCCAGCTCC+AGG + Chr1:83372145-83372164 None:intergenic 60.0%
! CAAAGTGAGGGTGGTGGCGA+TGG + Chr1:83370767-83370786 None:intergenic 60.0%
! GAGGGTGGTGGCGATGGAGT+GGG + Chr1:83370761-83370780 None:intergenic 65.0%
! GTGGTGGCGATGGAGTGGGA+AGG + Chr1:83370757-83370776 None:intergenic 65.0%
! TGAGGGTGGTGGCGATGGAG+TGG + Chr1:83370762-83370781 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 83370751 83373133 83370751 ID=MsG0180004835.01;Name=MsG0180004835.01
Chr1 mRNA 83370751 83373133 83370751 ID=MsG0180004835.01.T01;Parent=MsG0180004835.01;Name=MsG0180004835.01.T01;_AED=0.19;_eAED=0.26;_QI=0|0.85|0.87|1|1|1|8|274|471
Chr1 exon 83370751 83371357 83370751 ID=MsG0180004835.01.T01:exon:27595;Parent=MsG0180004835.01.T01
Chr1 exon 83371450 83371613 83371450 ID=MsG0180004835.01.T01:exon:27594;Parent=MsG0180004835.01.T01
Chr1 exon 83371706 83371817 83371706 ID=MsG0180004835.01.T01:exon:27593;Parent=MsG0180004835.01.T01
Chr1 exon 83371937 83372098 83371937 ID=MsG0180004835.01.T01:exon:27592;Parent=MsG0180004835.01.T01
Chr1 exon 83372193 83372285 83372193 ID=MsG0180004835.01.T01:exon:27591;Parent=MsG0180004835.01.T01
Chr1 exon 83372376 83372576 83372376 ID=MsG0180004835.01.T01:exon:27590;Parent=MsG0180004835.01.T01
Chr1 exon 83372669 83372875 83372669 ID=MsG0180004835.01.T01:exon:27589;Parent=MsG0180004835.01.T01
Chr1 exon 83372990 83373133 83372990 ID=MsG0180004835.01.T01:exon:27588;Parent=MsG0180004835.01.T01
Chr1 CDS 83372990 83373133 83372990 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83372669 83372875 83372669 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83372376 83372576 83372376 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83372193 83372285 83372193 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83371937 83372098 83371937 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83371706 83371817 83371706 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83371450 83371613 83371450 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 CDS 83371025 83371357 83371025 ID=MsG0180004835.01.T01:cds;Parent=MsG0180004835.01.T01
Chr1 three_prime_UTR 83370751 83371024 83370751 ID=MsG0180004835.01.T01:three_prime_utr;Parent=MsG0180004835.01.T01
Gene Sequence

>MsG0180004835.01.T01

ATGCCTTCCCACTCCATCGCCACCACCCTCACTTTGCCACTCACAACTACAGAGATGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAAAGATCAGGGAAGCTACCTTCTAACCAGAGAATGTCTTGGAGAAAAGACTCTGATTGATTTGGTTGGAGGGTATTATGATGCTGGTGACAATGTCAAGTTTGGTTTTCCTATGGCTTTTACTACCACTATGCTTTCATGGAGTGTTATTGACTTTGGTGGGTTGATGAAAGGTGAGTTGCCTAATGCTAGAGAAGCTATTCGTTGGGCTACTGATTATCTTCTAAAAGCTACTGCACATCCAAACACCATTTATGTTCAGGTTGGAGATGCTAAAAAGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTTTTCAAGATTGATGCAAACGCACCTGGTTCTGAAGTTGCTGCAGAAACCGCTGCAGCATTAGCAGCTGCTTCTCTTGTTTTTAGAAGAACTGATCCAACATACTCCAAAATTTTAGTGAGAAGGGCTATCAGGGTTTTTCAGTTTGCTGATCAACACAGAGGACCTTACAGCAATGTCTTGAAACCCTTTGTCTGTCCCTTTTACTGTGATTACTCTGGTTATCAGGATGAGTTGTTGTGGGGTGCTGCTTGGTTACACAAAGCTACAAAGAATCCAATGTACCTAAATTACATTCAAGTTAATGGTCAAATCCTAGGAGCTGCAGAGTTTGACAACACATTTGGTTGGGATAACAAACATGTTGGAGCAAGGATACTTCTTTCAAAGGAATTTCTAGTTCAAAGGGTAAAATCCCTCCATGACTACAAGGGCCATTCAGACAATTTCGTTTGCTCTTTAATTCCTGGAGCTGGATCCTCTTCTGCACAATATACCCCAGGTGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAGTATGTCACATCCACTAGCTTCTTACTGGTAGCTTATGCCAAATACTTGACCAAATCACATTCTGTTGTGCGTTGTGGTGGTACCATAGTAACACCAAAGAGACTCAGAACCTTAGCCAAGAAACAGGTGGATTACTTGCTAGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGACCAAGGTATCCACAAAGGATACACCACAGGGGATCATCACTTCCTTCAATGGCTGTACACCCAGGAAAGATCCAATGTTCAGCAGGGTTCAGTGTGATGAGTTCACAATCCCCTAATCCCAACATTCTAGTAGGTGCTGTTGTTGGAGGACCAGATCAGCATGATAGGTTTCCAGATAAACGGTCAGATTATGAGCAATCAGAGCCAGCAACTTATGTTAATGCACCACTTGTGGGAACACTTGCTTATCTTGCACACTCATTCGGTCAACTTTAG

Protein sequence

>MsG0180004835.01.T01

MPSHSIATTLTLPLTTTEMLSPNPFSSLKAKDQGSYLLTRECLGEKTLIDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIDFGGLMKGELPNAREAIRWATDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANAPGSEVAAETAAALAAASLVFRRTDPTYSKILVRRAIRVFQFADQHRGPYSNVLKPFVCPFYCDYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEFDNTFGWDNKHVGARILLSKEFLVQRVKSLHDYKGHSDNFVCSLIPGAGSSSAQYTPGGLLFKMSDSNMQYVTSTSFLLVAYAKYLTKSHSVVRCGGTIVTPKRLRTLAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSMAVHPGKIQCSAGFSVMSSQSPNPNILVGAVVGGPDQHDRFPDKRSDYEQSEPATYVNAPLVGTLAYLAHSFGQL*