Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048140.01.T01 | XP_013466866.1 | 80.448 | 491 | 87 | 1 | 1 | 491 | 1 | 482 | 0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048140.01.T01 | O80497 | 58.012 | 493 | 190 | 4 | 7 | 491 | 9 | 492 | 0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048140.01.T01 | A0A072VGL9 | 80.448 | 491 | 87 | 1 | 1 | 491 | 1 | 482 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048140.01.T01 | MTR_1g037340 | 80.448 | 491 | 87 | 1 | 1 | 491 | 1 | 482 | 0.0 | 803 |
| MsG0080048140.01.T01 | MTR_8g099410 | 52.532 | 474 | 209 | 6 | 25 | 491 | 28 | 492 | 7.41e-172 | 494 |
| MsG0080048140.01.T01 | MTR_8g099410 | 52.532 | 474 | 209 | 6 | 25 | 491 | 28 | 492 | 3.59e-170 | 494 |
| MsG0080048140.01.T01 | MTR_3g080190 | 49.194 | 496 | 225 | 8 | 5 | 488 | 23 | 503 | 2.04e-166 | 481 |
| MsG0080048140.01.T01 | MTR_5g085730 | 48.984 | 492 | 228 | 8 | 6 | 488 | 17 | 494 | 1.67e-164 | 475 |
| MsG0080048140.01.T01 | MTR_4g074960 | 51.363 | 477 | 209 | 7 | 25 | 490 | 28 | 492 | 9.16e-163 | 474 |
| MsG0080048140.01.T01 | MTR_5g093590 | 48.692 | 497 | 229 | 9 | 11 | 490 | 13 | 500 | 1.01e-160 | 465 |
| MsG0080048140.01.T01 | MTR_3g080810 | 46.450 | 493 | 233 | 11 | 12 | 491 | 20 | 494 | 1.55e-142 | 419 |
| MsG0080048140.01.T01 | MTR_5g010000 | 47.548 | 469 | 227 | 6 | 25 | 490 | 40 | 492 | 2.58e-141 | 416 |
| MsG0080048140.01.T01 | MTR_5g009970 | 46.482 | 469 | 232 | 6 | 25 | 490 | 41 | 493 | 3.22e-138 | 408 |
| MsG0080048140.01.T01 | MTR_8g104820 | 46.541 | 477 | 230 | 9 | 25 | 491 | 30 | 491 | 1.25e-136 | 403 |
| MsG0080048140.01.T01 | MTR_3g117500 | 45.679 | 486 | 233 | 9 | 19 | 491 | 18 | 485 | 1.43e-133 | 395 |
| MsG0080048140.01.T01 | MTR_3g010330 | 46.875 | 480 | 230 | 10 | 20 | 491 | 19 | 481 | 2.17e-131 | 390 |
| MsG0080048140.01.T01 | MTR_4g035930 | 43.918 | 485 | 249 | 9 | 11 | 490 | 1 | 467 | 1.32e-128 | 382 |
| MsG0080048140.01.T01 | MTR_4g035955 | 44.330 | 485 | 246 | 10 | 11 | 490 | 1 | 466 | 6.37e-128 | 380 |
| MsG0080048140.01.T01 | MTR_3g105230 | 44.079 | 456 | 233 | 9 | 25 | 477 | 30 | 466 | 1.36e-124 | 372 |
| MsG0080048140.01.T01 | MTR_1g088190 | 45.684 | 475 | 216 | 10 | 25 | 491 | 39 | 479 | 3.14e-123 | 369 |
| MsG0080048140.01.T01 | MTR_4g035975 | 43.426 | 502 | 245 | 14 | 9 | 490 | 7 | 489 | 4.00e-121 | 363 |
| MsG0080048140.01.T01 | MTR_3g023740 | 42.685 | 499 | 259 | 10 | 1 | 491 | 1 | 480 | 4.01e-121 | 363 |
| MsG0080048140.01.T01 | MTR_3g113720 | 40.966 | 476 | 255 | 10 | 26 | 490 | 58 | 518 | 3.16e-117 | 355 |
| MsG0080048140.01.T01 | MTR_5g009970 | 44.496 | 427 | 218 | 6 | 67 | 490 | 9 | 419 | 1.28e-116 | 350 |
| MsG0080048140.01.T01 | MTR_8g075990 | 42.138 | 477 | 250 | 10 | 26 | 491 | 64 | 525 | 2.61e-107 | 330 |
| MsG0080048140.01.T01 | MTR_5g009970 | 42.892 | 408 | 214 | 6 | 86 | 490 | 1 | 392 | 2.84e-104 | 317 |
| MsG0080048140.01.T01 | MTR_1g037320 | 90.533 | 169 | 7 | 1 | 86 | 254 | 1 | 160 | 8.05e-96 | 291 |
| MsG0080048140.01.T01 | MTR_1g037320 | 95.968 | 124 | 5 | 0 | 365 | 488 | 166 | 289 | 1.65e-80 | 252 |
| MsG0080048140.01.T01 | MTR_2g028480 | 38.645 | 502 | 251 | 14 | 25 | 491 | 111 | 590 | 5.01e-84 | 271 |
| MsG0080048140.01.T01 | MTR_3g090540 | 34.411 | 526 | 291 | 16 | 5 | 490 | 72 | 583 | 8.97e-81 | 263 |
| MsG0080048140.01.T01 | MTR_3g082440 | 37.702 | 496 | 259 | 17 | 25 | 490 | 116 | 591 | 9.08e-80 | 261 |
| MsG0080048140.01.T01 | MTR_5g009970 | 44.118 | 340 | 171 | 6 | 154 | 490 | 1 | 324 | 1.85e-77 | 246 |
| MsG0080048140.01.T01 | MTR_1g088190 | 44.025 | 318 | 138 | 8 | 25 | 335 | 39 | 323 | 1.06e-65 | 216 |
| MsG0080048140.01.T01 | MTR_7g108925 | 45.570 | 158 | 84 | 2 | 335 | 491 | 43 | 199 | 6.30e-42 | 149 |
| MsG0080048140.01.T01 | MTR_0393s0050 | 45.890 | 146 | 75 | 3 | 327 | 470 | 13 | 156 | 3.61e-34 | 127 |
| MsG0080048140.01.T01 | MTR_4g047570 | 60.177 | 113 | 25 | 2 | 277 | 388 | 1 | 94 | 4.14e-33 | 121 |
| MsG0080048140.01.T01 | MTR_4g128810 | 37.748 | 151 | 86 | 5 | 344 | 491 | 189 | 334 | 4.66e-19 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048140.01.T01 | AT2G44570 | 58.012 | 493 | 190 | 4 | 7 | 491 | 9 | 492 | 0.0 | 570 |
| MsG0080048140.01.T01 | AT2G44550 | 57.231 | 484 | 196 | 3 | 8 | 490 | 16 | 489 | 0.0 | 554 |
| MsG0080048140.01.T01 | AT2G44540 | 56.017 | 482 | 202 | 2 | 8 | 488 | 16 | 488 | 0.0 | 544 |
| MsG0080048140.01.T01 | AT2G44560 | 56.495 | 485 | 201 | 2 | 8 | 491 | 16 | 491 | 0.0 | 532 |
| MsG0080048140.01.T01 | AT1G64390 | 52.165 | 485 | 214 | 7 | 14 | 491 | 16 | 489 | 7.09e-176 | 508 |
| MsG0080048140.01.T01 | AT4G11050 | 53.040 | 477 | 208 | 6 | 21 | 490 | 22 | 489 | 1.77e-172 | 496 |
| MsG0080048140.01.T01 | AT4G11050 | 53.040 | 477 | 208 | 6 | 21 | 490 | 22 | 489 | 8.30e-172 | 498 |
| MsG0080048140.01.T01 | AT4G11050 | 53.040 | 477 | 208 | 6 | 21 | 490 | 22 | 489 | 1.34e-171 | 497 |
| MsG0080048140.01.T01 | AT2G32990 | 48.000 | 500 | 235 | 8 | 5 | 488 | 12 | 502 | 1.97e-160 | 465 |
| MsG0080048140.01.T01 | AT2G44570 | 54.791 | 407 | 168 | 3 | 4 | 403 | 6 | 403 | 8.94e-150 | 434 |
| MsG0080048140.01.T01 | AT1G48930 | 49.156 | 474 | 219 | 6 | 25 | 488 | 30 | 491 | 7.27e-145 | 429 |
| MsG0080048140.01.T01 | AT1G02800 | 49.061 | 479 | 222 | 9 | 19 | 491 | 37 | 499 | 2.46e-143 | 421 |
| MsG0080048140.01.T01 | AT1G23210 | 47.862 | 491 | 232 | 9 | 10 | 491 | 11 | 486 | 2.45e-140 | 413 |
| MsG0080048140.01.T01 | AT1G70710 | 46.465 | 495 | 241 | 9 | 6 | 491 | 7 | 486 | 8.24e-138 | 406 |
| MsG0080048140.01.T01 | AT4G02290 | 47.468 | 474 | 227 | 8 | 25 | 491 | 52 | 510 | 2.64e-136 | 403 |
| MsG0080048140.01.T01 | AT4G23560 | 44.715 | 492 | 250 | 8 | 3 | 490 | 1 | 474 | 3.49e-132 | 392 |
| MsG0080048140.01.T01 | AT1G71380 | 46.185 | 498 | 240 | 11 | 3 | 491 | 1 | 479 | 8.47e-132 | 391 |
| MsG0080048140.01.T01 | AT3G43860 | 44.737 | 494 | 248 | 8 | 5 | 491 | 9 | 484 | 3.08e-129 | 384 |
| MsG0080048140.01.T01 | AT3G43860 | 44.737 | 494 | 248 | 8 | 5 | 491 | 9 | 484 | 3.08e-129 | 384 |
| MsG0080048140.01.T01 | AT4G39010 | 45.283 | 477 | 237 | 10 | 25 | 491 | 29 | 491 | 4.47e-128 | 382 |
| MsG0080048140.01.T01 | AT1G22880 | 45.749 | 494 | 241 | 10 | 6 | 491 | 5 | 479 | 7.13e-128 | 380 |
| MsG0080048140.01.T01 | AT4G09740 | 43.496 | 492 | 256 | 8 | 3 | 490 | 1 | 474 | 1.61e-127 | 380 |
| MsG0080048140.01.T01 | AT1G19940 | 44.231 | 468 | 239 | 10 | 25 | 485 | 48 | 500 | 5.02e-122 | 367 |
| MsG0080048140.01.T01 | AT1G19940 | 44.231 | 468 | 239 | 10 | 25 | 485 | 48 | 500 | 5.02e-122 | 367 |
| MsG0080048140.01.T01 | AT4G39000 | 44.375 | 480 | 235 | 11 | 25 | 490 | 25 | 486 | 2.22e-114 | 347 |
| MsG0080048140.01.T01 | AT4G38990 | 44.158 | 505 | 238 | 14 | 7 | 490 | 8 | 489 | 8.94e-114 | 345 |
| MsG0080048140.01.T01 | AT1G75680 | 43.137 | 459 | 239 | 9 | 26 | 477 | 58 | 501 | 5.95e-111 | 338 |
| MsG0080048140.01.T01 | AT4G02290 | 43.826 | 413 | 210 | 8 | 86 | 491 | 1 | 398 | 1.29e-101 | 310 |
| MsG0080048140.01.T01 | AT1G22880 | 43.961 | 414 | 205 | 10 | 86 | 491 | 1 | 395 | 2.93e-98 | 302 |
| MsG0080048140.01.T01 | AT4G39010 | 42.473 | 372 | 192 | 8 | 25 | 387 | 29 | 387 | 7.23e-91 | 282 |
| MsG0080048140.01.T01 | AT1G19940 | 43.514 | 370 | 193 | 7 | 25 | 388 | 48 | 407 | 4.59e-90 | 281 |
| MsG0080048140.01.T01 | AT5G49720 | 36.100 | 518 | 280 | 16 | 7 | 491 | 88 | 587 | 5.06e-79 | 258 |
| MsG0080048140.01.T01 | AT1G65610 | 35.642 | 491 | 275 | 14 | 25 | 490 | 116 | 590 | 3.26e-77 | 254 |
| MsG0080048140.01.T01 | AT4G24260 | 36.546 | 498 | 267 | 15 | 25 | 491 | 108 | 587 | 1.00e-76 | 253 |
| MsG0080048140.01.T01 | AT1G22880 | 45.994 | 337 | 158 | 7 | 6 | 336 | 5 | 323 | 2.55e-76 | 243 |
| MsG0080048140.01.T01 | AT4G38990 | 43.923 | 362 | 161 | 8 | 7 | 363 | 8 | 332 | 2.60e-76 | 243 |
| MsG0080048140.01.T01 | AT4G24260 | 35.246 | 366 | 195 | 11 | 25 | 361 | 108 | 460 | 2.53e-45 | 166 |
| MsG0080048140.01.T01 | AT4G24260 | 35.404 | 322 | 169 | 9 | 25 | 319 | 108 | 417 | 8.93e-44 | 160 |
Find 110 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTATCAGCCATAAAA+TGG | 0.173859 | contig219end:+24362 | MsG0080048140.01.T01:CDS |
| ACTGCTCCCTCTAATATATT+AGG | 0.190260 | contig219end:-26248 | None:intergenic |
| ATATTCCAGTAGTGGGTTTA+AGG | 0.201253 | contig219end:+24836 | MsG0080048140.01.T01:CDS |
| GGGCAGCAGCATGGCTTTAT+AGG | 0.201278 | contig219end:+25037 | MsG0080048140.01.T01:CDS |
| TGCTGAAACTGCTGCTGCTT+TGG | 0.209306 | contig219end:+24546 | MsG0080048140.01.T01:CDS |
| ACCATGTAACTCATATTTCT+TGG | 0.229577 | contig219end:-26095 | None:intergenic |
| AATAGGAATGACTTCCAATT+AGG | 0.235836 | contig219end:+26305 | MsG0080048140.01.T01:CDS |
| ATGTTCTTCATCGATCTTAT+AGG | 0.238276 | contig219end:-24506 | None:intergenic |
| CCCCTCTCCATGTTACTCTT+TGG | 0.263890 | contig219end:-24048 | None:intergenic |
| TCGATCTTATAGGAATTTCT+AGG | 0.273352 | contig219end:-24496 | None:intergenic |
| CTGGTCTTTCCCAACATTGA+TGG | 0.294669 | contig219end:-24459 | None:intergenic |
| ATGATGGGTTTACGGATAAT+AGG | 0.312077 | contig219end:+26288 | MsG0080048140.01.T01:CDS |
| ATGAGTTACATGGTGGGATA+TGG | 0.319706 | contig219end:+26104 | MsG0080048140.01.T01:CDS |
| GCTGGAGACAATTTGAAGTT+AGG | 0.329508 | contig219end:+24253 | MsG0080048140.01.T01:CDS |
| CTGCTCCCTCTAATATATTA+GGG | 0.334294 | contig219end:-26247 | None:intergenic |
| CCCTCTAATATATTAGGGTT+TGG | 0.335942 | contig219end:-26242 | None:intergenic |
| ACCAAACCCTAATATATTAG+AGG | 0.337833 | contig219end:+26241 | MsG0080048140.01.T01:CDS |
| TAGTAGTTGGCTCCCCTAAT+TGG | 0.338232 | contig219end:-26319 | None:intergenic |
| ACAAACAGGATGAATTACTA+TGG | 0.338358 | contig219end:+25016 | MsG0080048140.01.T01:intron |
| ATTTCTCCATATAAAATGTT+TGG | 0.348332 | contig219end:-24418 | None:intergenic |
| AGATCAAAATGATGGGTTTA+CGG | 0.357637 | contig219end:+26280 | MsG0080048140.01.T01:CDS |
| AAGAGAAGTCTCCAGAGATT+TGG | 0.359356 | contig219end:+25685 | MsG0080048140.01.T01:CDS |
| GCAATCATGCAAAGCAAGTA+TGG | 0.360075 | contig219end:+24623 | MsG0080048140.01.T01:CDS |
| TTGGAGGTGCAGACGACATT+GGG | 0.375469 | contig219end:+25091 | MsG0080048140.01.T01:CDS |
| AATGTTACTTGTGCTGATTA+TGG | 0.377433 | contig219end:+23962 | MsG0080048140.01.T01:CDS |
| TGCATTATCAGCCATAAAAT+GGG | 0.387186 | contig219end:+24363 | MsG0080048140.01.T01:CDS |
| CTCCATGTTACTCTTTGGTT+AGG | 0.387995 | contig219end:-24043 | None:intergenic |
| ATAGGAATGACTTCCAATTA+GGG | 0.388331 | contig219end:+26306 | MsG0080048140.01.T01:CDS |
| TAATGCATTTGTATACTCAT+TGG | 0.395697 | contig219end:-24347 | None:intergenic |
| AGACAAGTATTTAGAATAAG+TGG | 0.398598 | contig219end:-25853 | None:intergenic |
| GTGCAAGATCAATGTTTAGT+TGG | 0.403090 | contig219end:+25115 | MsG0080048140.01.T01:CDS |
| CAACATTGATGGTCTGAATC+AGG | 0.407431 | contig219end:-24448 | None:intergenic |
| GTTTGTTATGGTTTCAACAA+TGG | 0.414301 | contig219end:+25790 | MsG0080048140.01.T01:CDS |
| TTTGTTATGGTTTCAACAAT+GGG | 0.422337 | contig219end:+25791 | MsG0080048140.01.T01:CDS |
| TTGTATTGAGTCCAAATCTC+TGG | 0.428483 | contig219end:-25696 | None:intergenic |
| ACATCTGTTGCACCTTTAGT+TGG | 0.431764 | contig219end:+26341 | MsG0080048140.01.T01:CDS |
| CTTAATGATGGCAAAGATGC+TGG | 0.433310 | contig219end:+24079 | MsG0080048140.01.T01:CDS |
| CATGTTACTCTTTGGTTAGG+AGG | 0.436984 | contig219end:-24040 | None:intergenic |
| GGCAGCAGCATGGCTTTATA+GGG | 0.439461 | contig219end:+25038 | MsG0080048140.01.T01:CDS |
| GTGAGTTCAGATCAAAATGA+TGG | 0.443435 | contig219end:+26272 | MsG0080048140.01.T01:CDS |
| TGCAAGATCAATGTTTAGTT+GGG | 0.447959 | contig219end:+25116 | MsG0080048140.01.T01:CDS |
| TGCATTGCTATCGGAGGGCT+CGG | 0.448179 | contig219end:+24582 | MsG0080048140.01.T01:CDS |
| TATCACCTTAAACCCACTAC+TGG | 0.448534 | contig219end:-24841 | None:intergenic |
| GCTAAATACTATGATTACCT+TGG | 0.461392 | contig219end:+25072 | MsG0080048140.01.T01:CDS |
| CACATCTCTTGTTCAAGCTC+AGG | 0.464765 | contig219end:+25929 | MsG0080048140.01.T01:CDS |
| ATGGAGCACAATAGAGTTCA+AGG | 0.466441 | contig219end:+24309 | MsG0080048140.01.T01:CDS |
| CTAGGTGTTGACATATCCTC+TGG | 0.468045 | contig219end:-24478 | None:intergenic |
| GCTCCATGATAGCATTGTTA+TGG | 0.468136 | contig219end:-24293 | None:intergenic |
| TGCTTCTCTTGCATTGCTAT+CGG | 0.471475 | contig219end:+24573 | MsG0080048140.01.T01:CDS |
| ATACCATCTTGACATGTAAC+TGG | 0.472002 | contig219end:-26194 | None:intergenic |
| GCAAAAGTATATTCCAGTAG+TGG | 0.472543 | contig219end:+24828 | MsG0080048140.01.T01:CDS |
| TTACCATAACAATGCTATCA+TGG | 0.480734 | contig219end:+24290 | MsG0080048140.01.T01:CDS |
| CCATATAAAATGTTTGGTTG+TGG | 0.486979 | contig219end:-24412 | None:intergenic |
| TGATTCAGACCATCAATGTT+GGG | 0.495893 | contig219end:+24450 | MsG0080048140.01.T01:CDS |
| CTGATTCAGACCATCAATGT+TGG | 0.497406 | contig219end:+24449 | MsG0080048140.01.T01:CDS |
| GCTTTATAGGGCCACAGCCT+TGG | 0.498504 | contig219end:+25050 | MsG0080048140.01.T01:CDS |
| AAATACTATGATTACCTTGG+AGG | 0.502923 | contig219end:+25075 | MsG0080048140.01.T01:CDS |
| GTGCACAAATTCTTGTTGCA+AGG | 0.507769 | contig219end:+25154 | MsG0080048140.01.T01:CDS |
| ATTGTTATGGTAAATGCCAT+TGG | 0.511245 | contig219end:-24280 | None:intergenic |
| TTAATGATGGCAAAGATGCT+GGG | 0.513493 | contig219end:+24080 | MsG0080048140.01.T01:CDS |
| TTCTCTTGCATTGCTATCGG+AGG | 0.517580 | contig219end:+24576 | MsG0080048140.01.T01:CDS |
| TGCACAAATTCTTGTTGCAA+GGG | 0.526552 | contig219end:+25155 | MsG0080048140.01.T01:CDS |
| GTGGGTGGATACTATGATGC+TGG | 0.530357 | contig219end:+24235 | MsG0080048140.01.T01:CDS |
| CTTGGAGGTGCAGACGACAT+TGG | 0.537805 | contig219end:+25090 | MsG0080048140.01.T01:CDS |
| ACAAGAGATGTGAGATCAGA+AGG | 0.540179 | contig219end:-25918 | None:intergenic |
| TCTCTTGCATTGCTATCGGA+GGG | 0.540594 | contig219end:+24577 | MsG0080048140.01.T01:CDS |
| CCGCTGGTGGGATACTATCA+TGG | 0.543615 | contig219end:-24806 | None:intergenic |
| GGTGCAACAGATGTAGTAGT+TGG | 0.543626 | contig219end:-26332 | None:intergenic |
| TTCTACTGCTACATTTGCAA+TGG | 0.545999 | contig219end:+25830 | MsG0080048140.01.T01:CDS |
| CAAAAGTATATTCCAGTAGT+GGG | 0.550723 | contig219end:+24829 | MsG0080048140.01.T01:CDS |
| TGAGTTCAGATCAAAATGAT+GGG | 0.551634 | contig219end:+26273 | MsG0080048140.01.T01:CDS |
| AGTTGGGATGACAAGTATGT+TGG | 0.552848 | contig219end:+25132 | MsG0080048140.01.T01:CDS |
| GGGGATTCTGCACTTAATGA+TGG | 0.557687 | contig219end:+24067 | MsG0080048140.01.T01:CDS |
| AAGATCGATGAAGAACATCC+AGG | 0.560934 | contig219end:+24511 | MsG0080048140.01.T01:CDS |
| GACTTTGCAAACAATTCTAG+AGG | 0.562419 | contig219end:+24777 | MsG0080048140.01.T01:CDS |
| CATCATAGTATCCACCCACT+AGG | 0.575641 | contig219end:-24231 | None:intergenic |
| CCTCTATGATGAATTTGTTG+TGG | 0.577152 | contig219end:-26137 | None:intergenic |
| TAAGCAAGAACACCAACTAA+AGG | 0.577826 | contig219end:-26353 | None:intergenic |
| TTTGAAGTTAGGATTTCCAA+TGG | 0.577887 | contig219end:+24264 | MsG0080048140.01.T01:CDS |
| ACCAAAGAGTAACATGGAGA+GGG | 0.579071 | contig219end:+24047 | MsG0080048140.01.T01:CDS |
| ATCAATTGTATCAATCAAAG+AGG | 0.579306 | contig219end:+26163 | MsG0080048140.01.T01:CDS |
| CCACAACAAATTCATCATAG+AGG | 0.584665 | contig219end:+26137 | MsG0080048140.01.T01:CDS |
| CCAAACCCTAATATATTAGA+GGG | 0.586749 | contig219end:+26242 | MsG0080048140.01.T01:CDS |
| CAAACAGGATGAATTACTAT+GGG | 0.588140 | contig219end:+25017 | MsG0080048140.01.T01:intron |
| GCACCAGTTACATGTCAAGA+TGG | 0.588578 | contig219end:+26191 | MsG0080048140.01.T01:CDS |
| TCCAAGAAATATGAGTTACA+TGG | 0.588608 | contig219end:+26094 | MsG0080048140.01.T01:CDS |
| AATTACTATGGGCAGCAGCA+TGG | 0.593166 | contig219end:+25028 | MsG0080048140.01.T01:CDS |
| TGTGTTTAGGTTGACCTAGT+GGG | 0.596433 | contig219end:+24217 | MsG0080048140.01.T01:intron |
| ATGTGTTTAGGTTGACCTAG+TGG | 0.597174 | contig219end:+24216 | MsG0080048140.01.T01:intron |
| TCAGCAGCAAGATCAGTGCC+TGG | 0.597527 | contig219end:-24529 | None:intergenic |
| CAATGTCGTCTGCACCTCCA+AGG | 0.603267 | contig219end:-25089 | None:intergenic |
| GCAACCCTAAAATGCAGTGA+AGG | 0.610025 | contig219end:+25885 | MsG0080048140.01.T01:CDS |
| AAGAAATATGAGTTACATGG+TGG | 0.612793 | contig219end:+26097 | MsG0080048140.01.T01:CDS |
| AACCAAAGAGTAACATGGAG+AGG | 0.615946 | contig219end:+24046 | MsG0080048140.01.T01:CDS |
| GGAGGTGCAGACGACATTGG+GGG | 0.625200 | contig219end:+25093 | MsG0080048140.01.T01:CDS |
| ATAGTATTTAGCCAAGGCTG+TGG | 0.626527 | contig219end:-25061 | None:intergenic |
| TGGAGGTGCAGACGACATTG+GGG | 0.638482 | contig219end:+25092 | MsG0080048140.01.T01:CDS |
| CTCCTAACCAAAGAGTAACA+TGG | 0.639659 | contig219end:+24041 | MsG0080048140.01.T01:CDS |
| AGAAATATGAGTTACATGGT+GGG | 0.646567 | contig219end:+26098 | MsG0080048140.01.T01:CDS |
| TAATGATGGCAAAGATGCTG+GGG | 0.649436 | contig219end:+24081 | MsG0080048140.01.T01:CDS |
| GTAATCATAGTATTTAGCCA+AGG | 0.655522 | contig219end:-25067 | None:intergenic |
| CCAAAGAGTAACATGGAGAG+GGG | 0.660046 | contig219end:+24048 | MsG0080048140.01.T01:CDS |
| GCATTATCAGCCATAAAATG+GGG | 0.676447 | contig219end:+24364 | MsG0080048140.01.T01:CDS |
| TAGGAATGACTTCCAATTAG+GGG | 0.677773 | contig219end:+26307 | MsG0080048140.01.T01:CDS |
| CCATGATAGTATCCCACCAG+CGG | 0.703839 | contig219end:+24806 | MsG0080048140.01.T01:CDS |
| GTTTAGGTTGACCTAGTGGG+TGG | 0.704871 | contig219end:+24220 | MsG0080048140.01.T01:intron |
| TCAATGTTGGGAAAGACCAG+AGG | 0.708463 | contig219end:+24462 | MsG0080048140.01.T01:CDS |
| AAAATGTAGAGAAAACACCA+GGG | 0.709718 | contig219end:+25766 | MsG0080048140.01.T01:CDS |
| AAATGTAGAGAAAACACCAG+GGG | 0.725580 | contig219end:+25767 | MsG0080048140.01.T01:CDS |
| AATGTAGAGAAAACACCAGG+GGG | 0.737420 | contig219end:+25768 | MsG0080048140.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAATATATTCATTTA+GGG | + | contig219end:25579-25598 | MsG0080048140.01.T01:intron | 10.0% |
| !! | TAAAATGTTATGAAAAAAAA+GGG | - | contig219end:26050-26069 | None:intergenic | 10.0% |
| !! | TAGAAATAATATATTCATTT+AGG | + | contig219end:25578-25597 | MsG0080048140.01.T01:intron | 10.0% |
| !!! | AAAAAAACCAAAATATTTTA+AGG | - | contig219end:25451-25470 | None:intergenic | 10.0% |
| !!! | AAAAAACCAAAATATTTTAA+GGG | - | contig219end:25450-25469 | None:intergenic | 10.0% |
| !!! | ATTAATTTTTTTAGTAATTG+TGG | - | contig219end:24963-24982 | None:intergenic | 10.0% |
| !!! | GTTTATAATTTTTTCTTTTT+TGG | + | contig219end:24718-24737 | MsG0080048140.01.T01:intron | 10.0% |
| !!! | TATAAATTTTCCATTATATT+GGG | + | contig219end:25638-25657 | MsG0080048140.01.T01:intron | 10.0% |
| !!! | TTATAAATTTTCCATTATAT+TGG | + | contig219end:25637-25656 | MsG0080048140.01.T01:intron | 10.0% |
| !!! | TTTAATTTATACATTTAACT+TGG | - | contig219end:25959-25978 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAAGAAATTTACA+AGG | + | contig219end:25515-25534 | MsG0080048140.01.T01:intron | 10.0% |
| !! | ATTTATACATACATGAAAAT+TGG | + | contig219end:24981-25000 | MsG0080048140.01.T01:intron | 15.0% |
| !! | CAATATACTAAAAAAAATGA+AGG | + | contig219end:24888-24907 | MsG0080048140.01.T01:intron | 15.0% |
| !! | CTAAAATGTTATGAAAAAAA+AGG | - | contig219end:26051-26070 | None:intergenic | 15.0% |
| !! | TTTATACATACATGAAAATT+GGG | + | contig219end:24982-25001 | MsG0080048140.01.T01:intron | 15.0% |
| !!! | CTTTTTTTTCATAACATTTT+AGG | + | contig219end:26049-26068 | MsG0080048140.01.T01:intron | 15.0% |
| !! | ACAATGTTATGCTATATATA+TGG | - | contig219end:25205-25224 | None:intergenic | 20.0% |
| !! | ATATTTGATTGTTTGTCAAA+AGG | - | contig219end:26018-26037 | None:intergenic | 20.0% |
| !! | ATTTCTCCATATAAAATGTT+TGG | - | contig219end:24421-24440 | None:intergenic | 20.0% |
| !! | CTCTTGAAACAAAAATATAA+AGG | - | contig219end:25234-25253 | None:intergenic | 20.0% |
| !! | TAACTTTCTTATATGTGTTT+AGG | + | contig219end:24204-24223 | MsG0080048140.01.T01:intron | 20.0% |
| !! | TATAAAGAGAAATATTGTCT+TGG | - | contig219end:25388-25407 | None:intergenic | 20.0% |
| !! | TCAAGAGCTAATTAAAATAT+GGG | + | contig219end:25247-25266 | MsG0080048140.01.T01:intron | 20.0% |
| !! | TTCAAGAGCTAATTAAAATA+TGG | + | contig219end:25246-25265 | MsG0080048140.01.T01:intron | 20.0% |
| !!! | AAAAAGTTTGTTGTTTTTTG+AGG | + | contig219end:23997-24016 | MsG0080048140.01.T01:CDS | 20.0% |
| !!! | AAAAGTTTGTTGTTTTTTGA+GGG | + | contig219end:23998-24017 | MsG0080048140.01.T01:CDS | 20.0% |
| !!! | AACATTTTATATGGAGAAAT+TGG | + | contig219end:24421-24440 | MsG0080048140.01.T01:CDS | 20.0% |
| !!! | ACATTTCCCTTAAAATATTT+TGG | + | contig219end:25441-25460 | MsG0080048140.01.T01:intron | 20.0% |
| !!! | GCATTTTCATTATAAAATGA+AGG | - | contig219end:24139-24158 | None:intergenic | 20.0% |
| !!! | TTTTTTCATAACATTTTAGG+TGG | + | contig219end:26052-26071 | MsG0080048140.01.T01:intron | 20.0% |
| ! | ACTAAAAAAAATGAAGGAAG+TGG | + | contig219end:24894-24913 | MsG0080048140.01.T01:intron | 25.0% |
| ! | ATCAATTGTATCAATCAAAG+AGG | + | contig219end:26163-26182 | MsG0080048140.01.T01:CDS | 25.0% |
| ! | TAATGCATTTGTATACTCAT+TGG | - | contig219end:24350-24369 | None:intergenic | 25.0% |
| !! | AGACAAGTATTTAGAATAAG+TGG | - | contig219end:25856-25875 | None:intergenic | 25.0% |
| !! | TTTGTTATGGTTTCAACAAT+GGG | + | contig219end:25791-25810 | MsG0080048140.01.T01:CDS | 25.0% |
| AAAAATGTAGAGAAAACACC+AGG | + | contig219end:25765-25784 | MsG0080048140.01.T01:CDS | 30.0% | |
| AAAATGTAGAGAAAACACCA+GGG | + | contig219end:25766-25785 | MsG0080048140.01.T01:CDS | 30.0% | |
| AAATACTATGATTACCTTGG+AGG | + | contig219end:25075-25094 | MsG0080048140.01.T01:CDS | 30.0% | |
| AAGAAATATGAGTTACATGG+TGG | + | contig219end:26097-26116 | MsG0080048140.01.T01:CDS | 30.0% | |
| AATAGGAATGACTTCCAATT+AGG | + | contig219end:26305-26324 | MsG0080048140.01.T01:CDS | 30.0% | |
| ACAAACAGGATGAATTACTA+TGG | + | contig219end:25016-25035 | MsG0080048140.01.T01:intron | 30.0% | |
| ACCAAACCCTAATATATTAG+AGG | + | contig219end:26241-26260 | MsG0080048140.01.T01:CDS | 30.0% | |
| ACCATGTAACTCATATTTCT+TGG | - | contig219end:26098-26117 | None:intergenic | 30.0% | |
| AGAAATATGAGTTACATGGT+GGG | + | contig219end:26098-26117 | MsG0080048140.01.T01:CDS | 30.0% | |
| ATAGGAATGACTTCCAATTA+GGG | + | contig219end:26306-26325 | MsG0080048140.01.T01:CDS | 30.0% | |
| ATGCATTATCAGCCATAAAA+TGG | + | contig219end:24362-24381 | MsG0080048140.01.T01:CDS | 30.0% | |
| ATGTTCTTCATCGATCTTAT+AGG | - | contig219end:24509-24528 | None:intergenic | 30.0% | |
| ATTGTTATGGTAAATGCCAT+TGG | - | contig219end:24283-24302 | None:intergenic | 30.0% | |
| CAAACAGGATGAATTACTAT+GGG | + | contig219end:25017-25036 | MsG0080048140.01.T01:intron | 30.0% | |
| CCAAACCCTAATATATTAGA+GGG | + | contig219end:26242-26261 | MsG0080048140.01.T01:CDS | 30.0% | |
| CCATATAAAATGTTTGGTTG+TGG | - | contig219end:24415-24434 | None:intergenic | 30.0% | |
| GAATCAGAGAAAAACAACAA+AGG | - | contig219end:23940-23959 | None:intergenic | 30.0% | |
| GCTAAATACTATGATTACCT+TGG | + | contig219end:25072-25091 | MsG0080048140.01.T01:CDS | 30.0% | |
| GGGAATTTATTTGTACAAAC+AGG | + | contig219end:25002-25021 | MsG0080048140.01.T01:intron | 30.0% | |
| GTAATCATAGTATTTAGCCA+AGG | - | contig219end:25070-25089 | None:intergenic | 30.0% | |
| GTCAAGATGGTATTCAAAAA+TGG | + | contig219end:26204-26223 | MsG0080048140.01.T01:CDS | 30.0% | |
| TAAAATGAAGGAGAAGTCAA+AGG | - | contig219end:24127-24146 | None:intergenic | 30.0% | |
| TAGAGAACATTTATTTGCCA+TGG | + | contig219end:24921-24940 | MsG0080048140.01.T01:intron | 30.0% | |
| TCCAAGAAATATGAGTTACA+TGG | + | contig219end:26094-26113 | MsG0080048140.01.T01:CDS | 30.0% | |
| TCGATCTTATAGGAATTTCT+AGG | - | contig219end:24499-24518 | None:intergenic | 30.0% | |
| TGAGTTCAGATCAAAATGAT+GGG | + | contig219end:26273-26292 | MsG0080048140.01.T01:CDS | 30.0% | |
| TGCAAGATCAATGTTTAGTT+GGG | + | contig219end:25116-25135 | MsG0080048140.01.T01:CDS | 30.0% | |
| TGCATTATCAGCCATAAAAT+GGG | + | contig219end:24363-24382 | MsG0080048140.01.T01:CDS | 30.0% | |
| TTACCATAACAATGCTATCA+TGG | + | contig219end:24290-24309 | MsG0080048140.01.T01:CDS | 30.0% | |
| ! | CAAAAGTATATTCCAGTAGT+GGG | + | contig219end:24829-24848 | MsG0080048140.01.T01:CDS | 30.0% |
| ! | CCACAACCAAACATTTTATA+TGG | + | contig219end:24412-24431 | MsG0080048140.01.T01:CDS | 30.0% |
| ! | TGGTGTTTTCTCTACATTTT+TGG | - | contig219end:25766-25785 | None:intergenic | 30.0% |
| ! | TTTGAAGTTAGGATTTCCAA+TGG | + | contig219end:24264-24283 | MsG0080048140.01.T01:CDS | 30.0% |
| !! | AATGTTACTTGTGCTGATTA+TGG | + | contig219end:23962-23981 | MsG0080048140.01.T01:CDS | 30.0% |
| !! | AGATCAAAATGATGGGTTTA+CGG | + | contig219end:26280-26299 | MsG0080048140.01.T01:CDS | 30.0% |
| !! | GTTTGTTATGGTTTCAACAA+TGG | + | contig219end:25790-25809 | MsG0080048140.01.T01:CDS | 30.0% |
| !!! | ATTTTAGGTGGACTATATCT+TGG | + | contig219end:26064-26083 | MsG0080048140.01.T01:intron | 30.0% |
| !!! | TTTTAGGTGGACTATATCTT+GGG | + | contig219end:26065-26084 | MsG0080048140.01.T01:intron | 30.0% |
| AAATGTAGAGAAAACACCAG+GGG | + | contig219end:25767-25786 | MsG0080048140.01.T01:CDS | 35.0% | |
| ACTGCTCCCTCTAATATATT+AGG | - | contig219end:26251-26270 | None:intergenic | 35.0% | |
| ATACCATCTTGACATGTAAC+TGG | - | contig219end:26197-26216 | None:intergenic | 35.0% | |
| CCACAACAAATTCATCATAG+AGG | + | contig219end:26137-26156 | MsG0080048140.01.T01:CDS | 35.0% | |
| CCCTCTAATATATTAGGGTT+TGG | - | contig219end:26245-26264 | None:intergenic | 35.0% | |
| CTGCTCCCTCTAATATATTA+GGG | - | contig219end:26250-26269 | None:intergenic | 35.0% | |
| GACTTTGCAAACAATTCTAG+AGG | + | contig219end:24777-24796 | MsG0080048140.01.T01:CDS | 35.0% | |
| GCATTATCAGCCATAAAATG+GGG | + | contig219end:24364-24383 | MsG0080048140.01.T01:CDS | 35.0% | |
| GTGAGTTCAGATCAAAATGA+TGG | + | contig219end:26272-26291 | MsG0080048140.01.T01:CDS | 35.0% | |
| GTGCAAGATCAATGTTTAGT+TGG | + | contig219end:25115-25134 | MsG0080048140.01.T01:CDS | 35.0% | |
| TAAGCAAGAACACCAACTAA+AGG | - | contig219end:26356-26375 | None:intergenic | 35.0% | |
| TAGGAATGACTTCCAATTAG+GGG | + | contig219end:26307-26326 | MsG0080048140.01.T01:CDS | 35.0% | |
| TGATTCAGACCATCAATGTT+GGG | + | contig219end:24450-24469 | MsG0080048140.01.T01:CDS | 35.0% | |
| TGCACAAATTCTTGTTGCAA+GGG | + | contig219end:25155-25174 | MsG0080048140.01.T01:CDS | 35.0% | |
| TTAATGATGGCAAAGATGCT+GGG | + | contig219end:24080-24099 | MsG0080048140.01.T01:CDS | 35.0% | |
| TTCTACTGCTACATTTGCAA+TGG | + | contig219end:25830-25849 | MsG0080048140.01.T01:CDS | 35.0% | |
| TTGTATTGAGTCCAAATCTC+TGG | - | contig219end:25699-25718 | None:intergenic | 35.0% | |
| ! | ATCACCTTCACTGCATTTTA+GGG | - | contig219end:25892-25911 | None:intergenic | 35.0% |
| ! | GCAAAAGTATATTCCAGTAG+TGG | + | contig219end:24828-24847 | MsG0080048140.01.T01:CDS | 35.0% |
| !! | ATATTCCAGTAGTGGGTTTA+AGG | + | contig219end:24836-24855 | MsG0080048140.01.T01:CDS | 35.0% |
| !! | ATGATGGGTTTACGGATAAT+AGG | + | contig219end:26288-26307 | MsG0080048140.01.T01:CDS | 35.0% |
| !! | CCTCTATGATGAATTTGTTG+TGG | - | contig219end:26140-26159 | None:intergenic | 35.0% |
| AACCAAAGAGTAACATGGAG+AGG | + | contig219end:24046-24065 | MsG0080048140.01.T01:CDS | 40.0% | |
| AACTGCATGGCCCAATATAA+TGG | - | contig219end:25651-25670 | None:intergenic | 40.0% | |
| AAGAGAAGTCTCCAGAGATT+TGG | + | contig219end:25685-25704 | MsG0080048140.01.T01:CDS | 40.0% | |
| AAGATCGATGAAGAACATCC+AGG | + | contig219end:24511-24530 | MsG0080048140.01.T01:CDS | 40.0% | |
| AATGTAGAGAAAACACCAGG+GGG | + | contig219end:25768-25787 | MsG0080048140.01.T01:CDS | 40.0% | |
| ACAAGAGATGTGAGATCAGA+AGG | - | contig219end:25921-25940 | None:intergenic | 40.0% | |
| ACATCTGTTGCACCTTTAGT+TGG | + | contig219end:26341-26360 | MsG0080048140.01.T01:CDS | 40.0% | |
| ACCAAAGAGTAACATGGAGA+GGG | + | contig219end:24047-24066 | MsG0080048140.01.T01:CDS | 40.0% | |
| AGTTGGGATGACAAGTATGT+TGG | + | contig219end:25132-25151 | MsG0080048140.01.T01:CDS | 40.0% | |
| ATAGTATTTAGCCAAGGCTG+TGG | - | contig219end:25064-25083 | None:intergenic | 40.0% | |
| ATGGAGCACAATAGAGTTCA+AGG | + | contig219end:24309-24328 | MsG0080048140.01.T01:CDS | 40.0% | |
| CATGTTACTCTTTGGTTAGG+AGG | - | contig219end:24043-24062 | None:intergenic | 40.0% | |
| CCAACCTAAAACAAACTGCA+TGG | - | contig219end:25664-25683 | None:intergenic | 40.0% | |
| CTCCATGTTACTCTTTGGTT+AGG | - | contig219end:24046-24065 | None:intergenic | 40.0% | |
| CTCCTAACCAAAGAGTAACA+TGG | + | contig219end:24041-24060 | MsG0080048140.01.T01:CDS | 40.0% | |
| CTGATTCAGACCATCAATGT+TGG | + | contig219end:24449-24468 | MsG0080048140.01.T01:CDS | 40.0% | |
| CTTAATGATGGCAAAGATGC+TGG | + | contig219end:24079-24098 | MsG0080048140.01.T01:CDS | 40.0% | |
| GCAATCATGCAAAGCAAGTA+TGG | + | contig219end:24623-24642 | MsG0080048140.01.T01:CDS | 40.0% | |
| GCTCCATGATAGCATTGTTA+TGG | - | contig219end:24296-24315 | None:intergenic | 40.0% | |
| GTGCACAAATTCTTGTTGCA+AGG | + | contig219end:25154-25173 | MsG0080048140.01.T01:CDS | 40.0% | |
| TAATGATGGCAAAGATGCTG+GGG | + | contig219end:24081-24100 | MsG0080048140.01.T01:CDS | 40.0% | |
| TAATTCCTTAACCAATGCCC+CGG | + | contig219end:25406-25425 | MsG0080048140.01.T01:intron | 40.0% | |
| TATCACCTTAAACCCACTAC+TGG | - | contig219end:24844-24863 | None:intergenic | 40.0% | |
| TGCTTCTCTTGCATTGCTAT+CGG | + | contig219end:24573-24592 | MsG0080048140.01.T01:CDS | 40.0% | |
| TTTGCCATGGCTACAATGAT+TGG | + | contig219end:24934-24953 | MsG0080048140.01.T01:intron | 40.0% | |
| ! | AATATACTTTTGCCGCTGGT+GGG | - | contig219end:24821-24840 | None:intergenic | 40.0% |
| ! | ATGAGTTACATGGTGGGATA+TGG | + | contig219end:26104-26123 | MsG0080048140.01.T01:CDS | 40.0% |
| ! | CAACATTGATGGTCTGAATC+AGG | - | contig219end:24451-24470 | None:intergenic | 40.0% |
| ! | CATCACCTTCACTGCATTTT+AGG | - | contig219end:25893-25912 | None:intergenic | 40.0% |
| ! | GCTGGAGACAATTTGAAGTT+AGG | + | contig219end:24253-24272 | MsG0080048140.01.T01:CDS | 40.0% |
| ! | GTAATCTGCTCCCCATTTTA+TGG | - | contig219end:24377-24396 | None:intergenic | 40.0% |
| !! | ATGTGTTTAGGTTGACCTAG+TGG | + | contig219end:24216-24235 | MsG0080048140.01.T01:intron | 40.0% |
| !! | TGTGTTTAGGTTGACCTAGT+GGG | + | contig219end:24217-24236 | MsG0080048140.01.T01:intron | 40.0% |
| !!! | CCATGCAGTTTGTTTTAGGT+TGG | + | contig219end:25661-25680 | MsG0080048140.01.T01:intron | 40.0% |
| !!! | TTTTTTGAGGGACAACGTTC+AGG | + | contig219end:24010-24029 | MsG0080048140.01.T01:CDS | 40.0% |
| AATTACTATGGGCAGCAGCA+TGG | + | contig219end:25028-25047 | MsG0080048140.01.T01:CDS | 45.0% | |
| AATTCCTTAACCAATGCCCC+GGG | + | contig219end:25407-25426 | MsG0080048140.01.T01:intron | 45.0% | |
| CACATCTCTTGTTCAAGCTC+AGG | + | contig219end:25929-25948 | MsG0080048140.01.T01:CDS | 45.0% | |
| CATCATAGTATCCACCCACT+AGG | - | contig219end:24234-24253 | None:intergenic | 45.0% | |
| CCAAAGAGTAACATGGAGAG+GGG | + | contig219end:24048-24067 | MsG0080048140.01.T01:CDS | 45.0% | |
| GCAACCCTAAAATGCAGTGA+AGG | + | contig219end:25885-25904 | MsG0080048140.01.T01:CDS | 45.0% | |
| GCACCAGTTACATGTCAAGA+TGG | + | contig219end:26191-26210 | MsG0080048140.01.T01:CDS | 45.0% | |
| GGGGATTCTGCACTTAATGA+TGG | + | contig219end:24067-24086 | MsG0080048140.01.T01:CDS | 45.0% | |
| GGTGCAACAGATGTAGTAGT+TGG | - | contig219end:26335-26354 | None:intergenic | 45.0% | |
| GTTGCCAATCATTGTAGCCA+TGG | - | contig219end:24941-24960 | None:intergenic | 45.0% | |
| TCAATGTTGGGAAAGACCAG+AGG | + | contig219end:24462-24481 | MsG0080048140.01.T01:CDS | 45.0% | |
| TCTCTTGCATTGCTATCGGA+GGG | + | contig219end:24577-24596 | MsG0080048140.01.T01:CDS | 45.0% | |
| TCTTGTTAACCAGTACCTCC+GGG | + | contig219end:25270-25289 | MsG0080048140.01.T01:intron | 45.0% | |
| TGAAACCATAACAAACCCCC+TGG | - | contig219end:25786-25805 | None:intergenic | 45.0% | |
| TTCTCTTGCATTGCTATCGG+AGG | + | contig219end:24576-24595 | MsG0080048140.01.T01:CDS | 45.0% | |
| ! | CTGGAATATACTTTTGCCGC+TGG | - | contig219end:24825-24844 | None:intergenic | 45.0% |
| ! | CTGGTCTTTCCCAACATTGA+TGG | - | contig219end:24462-24481 | None:intergenic | 45.0% |
| ! | GAATATACTTTTGCCGCTGG+TGG | - | contig219end:24822-24841 | None:intergenic | 45.0% |
| ! | GTCTTGTTAACCAGTACCTC+CGG | + | contig219end:25269-25288 | MsG0080048140.01.T01:intron | 45.0% |
| ! | TAGTAGTTGGCTCCCCTAAT+TGG | - | contig219end:26322-26341 | None:intergenic | 45.0% |
| !! | AAACACCAGGGGGTTTGTTA+TGG | + | contig219end:25778-25797 | MsG0080048140.01.T01:CDS | 45.0% |
| !! | CTAGGTGTTGACATATCCTC+TGG | - | contig219end:24481-24500 | None:intergenic | 45.0% |
| !! | TGGGCCATGCAGTTTGTTTT+AGG | + | contig219end:25657-25676 | MsG0080048140.01.T01:intron | 45.0% |
| ATTCCTTAACCAATGCCCCG+GGG | + | contig219end:25408-25427 | MsG0080048140.01.T01:intron | 50.0% | |
| CCATGATAGTATCCCACCAG+CGG | + | contig219end:24806-24825 | MsG0080048140.01.T01:CDS | 50.0% | |
| CCCCTCTCCATGTTACTCTT+TGG | - | contig219end:24051-24070 | None:intergenic | 50.0% | |
| CTTGTTAACCAGTACCTCCG+GGG | + | contig219end:25271-25290 | MsG0080048140.01.T01:intron | 50.0% | |
| GTGGGTGGATACTATGATGC+TGG | + | contig219end:24235-24254 | MsG0080048140.01.T01:CDS | 50.0% | |
| TAGTCCCTTAACTAGTGCCC+CGG | - | contig219end:25291-25310 | None:intergenic | 50.0% | |
| ! | TGCTGAAACTGCTGCTGCTT+TGG | + | contig219end:24546-24565 | MsG0080048140.01.T01:CDS | 50.0% |
| ! | TTGGAGGTGCAGACGACATT+GGG | + | contig219end:25091-25110 | MsG0080048140.01.T01:CDS | 50.0% |
| !! | GGCAGCAGCATGGCTTTATA+GGG | + | contig219end:25038-25057 | MsG0080048140.01.T01:CDS | 50.0% |
| !! | GTTTAGGTTGACCTAGTGGG+TGG | + | contig219end:24220-24239 | MsG0080048140.01.T01:intron | 50.0% |
| AAATGTTAGCCAGTGCCCCC+GGG | - | contig219end:25427-25446 | None:intergenic | 55.0% | |
| CAATGTCGTCTGCACCTCCA+AGG | - | contig219end:25092-25111 | None:intergenic | 55.0% | |
| CCGCTGGTGGGATACTATCA+TGG | - | contig219end:24809-24828 | None:intergenic | 55.0% | |
| GAAATGTTAGCCAGTGCCCC+CGG | - | contig219end:25428-25447 | None:intergenic | 55.0% | |
| GCTTTATAGGGCCACAGCCT+TGG | + | contig219end:25050-25069 | MsG0080048140.01.T01:CDS | 55.0% | |
| TCAGCAGCAAGATCAGTGCC+TGG | - | contig219end:24532-24551 | None:intergenic | 55.0% | |
| TGCATTGCTATCGGAGGGCT+CGG | + | contig219end:24582-24601 | MsG0080048140.01.T01:CDS | 55.0% | |
| TTCCTTAACCAATGCCCCGG+GGG | + | contig219end:25409-25428 | MsG0080048140.01.T01:intron | 55.0% | |
| ! | ACCTCCGGGGCACTAGTTAA+GGG | + | contig219end:25284-25303 | MsG0080048140.01.T01:intron | 55.0% |
| ! | CTTGGAGGTGCAGACGACAT+TGG | + | contig219end:25090-25109 | MsG0080048140.01.T01:CDS | 55.0% |
| ! | TACCTCCGGGGCACTAGTTA+AGG | + | contig219end:25283-25302 | MsG0080048140.01.T01:intron | 55.0% |
| ! | TGGAGGTGCAGACGACATTG+GGG | + | contig219end:25092-25111 | MsG0080048140.01.T01:CDS | 55.0% |
| !! | GGGCAGCAGCATGGCTTTAT+AGG | + | contig219end:25037-25056 | MsG0080048140.01.T01:CDS | 55.0% |
| AATGTTAGCCAGTGCCCCCG+GGG | - | contig219end:25426-25445 | None:intergenic | 60.0% | |
| TCCCTTAACTAGTGCCCCGG+AGG | - | contig219end:25288-25307 | None:intergenic | 60.0% | |
| ! | AACTAGTGCCCCGGAGGTAC+TGG | - | contig219end:25282-25301 | None:intergenic | 60.0% |
| ! | GGAGGTGCAGACGACATTGG+GGG | + | contig219end:25093-25112 | MsG0080048140.01.T01:CDS | 60.0% |
| !! | TGCCCCCGGGGCATTGGTTA+AGG | - | contig219end:25414-25433 | None:intergenic | 65.0% |
| ! | AACCAATGCCCCGGGGGCAC+TGG | + | contig219end:25415-25434 | MsG0080048140.01.T01:intron | 70.0% |
| AGCCAGTGCCCCCGGGGCAT+TGG | - | contig219end:25420-25439 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig219end | gene | 23905 | 26385 | 23905 | ID=MsG0080048140.01;Name=MsG0080048140.01 |
| contig219end | mRNA | 23905 | 26385 | 23905 | ID=MsG0080048140.01.T01;Parent=MsG0080048140.01;Name=MsG0080048140.01.T01;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.8|0.83|6|0|491 |
| contig219end | exon | 23905 | 24102 | 23905 | ID=MsG0080048140.01.T01:exon:2561;Parent=MsG0080048140.01.T01 |
| contig219end | exon | 24226 | 24654 | 24226 | ID=MsG0080048140.01.T01:exon:2560;Parent=MsG0080048140.01.T01 |
| contig219end | exon | 24759 | 24857 | 24759 | ID=MsG0080048140.01.T01:exon:2559;Parent=MsG0080048140.01.T01 |
| contig219end | exon | 25024 | 25176 | 25024 | ID=MsG0080048140.01.T01:exon:2558;Parent=MsG0080048140.01.T01 |
| contig219end | exon | 25669 | 25950 | 25669 | ID=MsG0080048140.01.T01:exon:2557;Parent=MsG0080048140.01.T01 |
| contig219end | exon | 26071 | 26385 | 26071 | ID=MsG0080048140.01.T01:exon:2556;Parent=MsG0080048140.01.T01 |
| contig219end | CDS | 23905 | 24102 | 23905 | ID=MsG0080048140.01.T01:cds;Parent=MsG0080048140.01.T01 |
| contig219end | CDS | 24226 | 24654 | 24226 | ID=MsG0080048140.01.T01:cds;Parent=MsG0080048140.01.T01 |
| contig219end | CDS | 24759 | 24857 | 24759 | ID=MsG0080048140.01.T01:cds;Parent=MsG0080048140.01.T01 |
| contig219end | CDS | 25024 | 25176 | 25024 | ID=MsG0080048140.01.T01:cds;Parent=MsG0080048140.01.T01 |
| contig219end | CDS | 25669 | 25950 | 25669 | ID=MsG0080048140.01.T01:cds;Parent=MsG0080048140.01.T01 |
| contig219end | CDS | 26071 | 26385 | 26071 | ID=MsG0080048140.01.T01:cds;Parent=MsG0080048140.01.T01 |
| Gene Sequence |
| Protein sequence |
