Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029407.01.T01 | XP_003616918.1 | 97.872 | 517 | 11 | 0 | 6 | 522 | 1 | 517 | 0 | 1068 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029407.01.T01 | O48766 | 75.301 | 498 | 114 | 2 | 9 | 500 | 9 | 503 | 0 | 797 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029407.01.T01 | G7K7J2 | 97.872 | 517 | 11 | 0 | 6 | 522 | 1 | 517 | 0.0 | 1068 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029407.01.T01 | MTR_5g085730 | 97.872 | 517 | 11 | 0 | 6 | 522 | 1 | 517 | 0.0 | 1068 |
MsG0580029407.01.T01 | MTR_3g080190 | 82.178 | 505 | 90 | 0 | 17 | 521 | 21 | 525 | 0.0 | 877 |
MsG0580029407.01.T01 | MTR_5g093590 | 71.173 | 503 | 144 | 1 | 4 | 505 | 2 | 504 | 0.0 | 750 |
MsG0580029407.01.T01 | MTR_8g099410 | 60.515 | 466 | 182 | 1 | 36 | 501 | 28 | 491 | 0.0 | 618 |
MsG0580029407.01.T01 | MTR_8g099410 | 60.515 | 466 | 182 | 1 | 36 | 501 | 28 | 491 | 0.0 | 616 |
MsG0580029407.01.T01 | MTR_4g074960 | 59.701 | 469 | 186 | 3 | 34 | 501 | 26 | 492 | 0.0 | 586 |
MsG0580029407.01.T01 | MTR_1g037340 | 50.725 | 483 | 224 | 6 | 22 | 499 | 6 | 479 | 2.65e-165 | 477 |
MsG0580029407.01.T01 | MTR_5g010000 | 49.167 | 480 | 224 | 7 | 27 | 502 | 30 | 493 | 5.24e-153 | 447 |
MsG0580029407.01.T01 | MTR_5g009970 | 47.771 | 471 | 227 | 6 | 35 | 502 | 40 | 494 | 3.70e-152 | 444 |
MsG0580029407.01.T01 | MTR_3g105230 | 45.248 | 484 | 248 | 6 | 6 | 489 | 1 | 467 | 1.54e-145 | 427 |
MsG0580029407.01.T01 | MTR_8g104820 | 47.234 | 470 | 235 | 8 | 36 | 501 | 30 | 490 | 9.88e-145 | 425 |
MsG0580029407.01.T01 | MTR_3g080810 | 46.908 | 469 | 236 | 8 | 36 | 501 | 35 | 493 | 1.21e-142 | 420 |
MsG0580029407.01.T01 | MTR_3g023740 | 45.090 | 499 | 257 | 6 | 6 | 504 | 1 | 482 | 7.08e-142 | 417 |
MsG0580029407.01.T01 | MTR_3g117500 | 44.000 | 475 | 255 | 6 | 31 | 502 | 19 | 485 | 2.01e-141 | 417 |
MsG0580029407.01.T01 | MTR_4g035955 | 45.416 | 469 | 241 | 7 | 34 | 501 | 12 | 466 | 9.34e-141 | 414 |
MsG0580029407.01.T01 | MTR_4g035930 | 42.739 | 482 | 259 | 8 | 22 | 501 | 1 | 467 | 8.21e-137 | 404 |
MsG0580029407.01.T01 | MTR_3g010330 | 45.532 | 470 | 238 | 7 | 36 | 501 | 25 | 480 | 8.26e-134 | 397 |
MsG0580029407.01.T01 | MTR_1g088190 | 45.648 | 471 | 224 | 9 | 36 | 503 | 39 | 480 | 7.53e-133 | 394 |
MsG0580029407.01.T01 | MTR_4g035975 | 44.792 | 480 | 234 | 10 | 36 | 501 | 27 | 489 | 5.74e-132 | 392 |
MsG0580029407.01.T01 | MTR_5g009970 | 46.729 | 428 | 209 | 6 | 78 | 502 | 9 | 420 | 9.10e-132 | 390 |
MsG0580029407.01.T01 | MTR_3g113720 | 44.798 | 471 | 246 | 9 | 37 | 502 | 58 | 519 | 5.22e-130 | 389 |
MsG0580029407.01.T01 | MTR_8g075990 | 45.223 | 471 | 244 | 10 | 37 | 502 | 64 | 525 | 4.07e-125 | 376 |
MsG0580029407.01.T01 | MTR_5g009970 | 44.988 | 409 | 206 | 6 | 97 | 502 | 1 | 393 | 1.92e-119 | 357 |
MsG0580029407.01.T01 | MTR_2g028480 | 39.085 | 568 | 277 | 18 | 5 | 519 | 54 | 605 | 2.64e-102 | 320 |
MsG0580029407.01.T01 | MTR_3g082440 | 39.308 | 491 | 256 | 17 | 32 | 496 | 112 | 586 | 8.73e-89 | 285 |
MsG0580029407.01.T01 | MTR_5g009970 | 44.282 | 341 | 171 | 6 | 165 | 502 | 1 | 325 | 4.66e-88 | 274 |
MsG0580029407.01.T01 | MTR_3g090540 | 37.067 | 491 | 264 | 17 | 34 | 496 | 105 | 578 | 2.24e-85 | 276 |
MsG0580029407.01.T01 | MTR_1g088190 | 44.373 | 311 | 142 | 8 | 36 | 343 | 39 | 321 | 1.61e-70 | 229 |
MsG0580029407.01.T01 | MTR_1g037320 | 55.280 | 161 | 71 | 1 | 97 | 257 | 1 | 160 | 2.77e-46 | 164 |
MsG0580029407.01.T01 | MTR_1g037320 | 49.180 | 122 | 61 | 1 | 378 | 499 | 169 | 289 | 4.27e-34 | 130 |
MsG0580029407.01.T01 | MTR_7g108925 | 45.283 | 159 | 86 | 1 | 345 | 503 | 43 | 200 | 8.97e-45 | 157 |
MsG0580029407.01.T01 | MTR_0393s0050 | 44.286 | 140 | 78 | 0 | 345 | 484 | 20 | 159 | 2.22e-37 | 136 |
MsG0580029407.01.T01 | MTR_4g128810 | 42.466 | 146 | 79 | 3 | 352 | 496 | 187 | 328 | 1.26e-26 | 111 |
MsG0580029407.01.T01 | MTR_4g047570 | 34.211 | 114 | 54 | 3 | 285 | 398 | 2 | 94 | 5.14e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029407.01.T01 | AT2G32990 | 75.301 | 498 | 114 | 2 | 9 | 500 | 9 | 503 | 0.0 | 797 |
MsG0580029407.01.T01 | AT1G64390 | 61.159 | 466 | 179 | 1 | 36 | 501 | 25 | 488 | 0.0 | 617 |
MsG0580029407.01.T01 | AT4G11050 | 60.510 | 471 | 184 | 1 | 32 | 502 | 22 | 490 | 0.0 | 613 |
MsG0580029407.01.T01 | AT4G11050 | 60.510 | 471 | 184 | 1 | 32 | 502 | 22 | 490 | 0.0 | 612 |
MsG0580029407.01.T01 | AT4G11050 | 60.510 | 471 | 184 | 1 | 32 | 502 | 22 | 490 | 0.0 | 610 |
MsG0580029407.01.T01 | AT1G48930 | 57.940 | 466 | 194 | 2 | 35 | 500 | 29 | 492 | 0.0 | 545 |
MsG0580029407.01.T01 | AT2G44550 | 49.177 | 486 | 237 | 5 | 14 | 499 | 12 | 487 | 1.86e-161 | 468 |
MsG0580029407.01.T01 | AT2G44540 | 49.064 | 481 | 236 | 5 | 19 | 499 | 17 | 488 | 5.22e-159 | 462 |
MsG0580029407.01.T01 | AT2G44560 | 49.177 | 486 | 238 | 5 | 14 | 499 | 12 | 488 | 6.84e-159 | 461 |
MsG0580029407.01.T01 | AT2G44570 | 47.737 | 486 | 245 | 6 | 15 | 499 | 12 | 489 | 8.39e-156 | 453 |
MsG0580029407.01.T01 | AT1G70710 | 45.875 | 497 | 256 | 7 | 6 | 501 | 1 | 485 | 1.93e-148 | 435 |
MsG0580029407.01.T01 | AT4G02290 | 47.974 | 469 | 234 | 6 | 36 | 503 | 52 | 511 | 1.85e-146 | 431 |
MsG0580029407.01.T01 | AT1G23210 | 45.603 | 489 | 256 | 6 | 14 | 501 | 6 | 485 | 5.00e-146 | 428 |
MsG0580029407.01.T01 | AT1G02800 | 48.498 | 466 | 226 | 7 | 36 | 499 | 43 | 496 | 1.84e-144 | 425 |
MsG0580029407.01.T01 | AT4G23560 | 48.529 | 476 | 223 | 8 | 31 | 502 | 18 | 475 | 7.68e-144 | 422 |
MsG0580029407.01.T01 | AT4G39010 | 45.319 | 470 | 245 | 7 | 36 | 501 | 29 | 490 | 4.74e-141 | 416 |
MsG0580029407.01.T01 | AT3G43860 | 43.976 | 498 | 256 | 8 | 8 | 501 | 5 | 483 | 1.27e-140 | 414 |
MsG0580029407.01.T01 | AT3G43860 | 43.976 | 498 | 256 | 8 | 8 | 501 | 5 | 483 | 1.27e-140 | 414 |
MsG0580029407.01.T01 | AT4G09740 | 47.689 | 476 | 227 | 8 | 31 | 502 | 18 | 475 | 2.75e-140 | 413 |
MsG0580029407.01.T01 | AT1G19940 | 47.186 | 462 | 234 | 7 | 36 | 496 | 48 | 500 | 4.18e-135 | 401 |
MsG0580029407.01.T01 | AT1G19940 | 47.186 | 462 | 234 | 7 | 36 | 496 | 48 | 500 | 4.18e-135 | 401 |
MsG0580029407.01.T01 | AT1G75680 | 47.265 | 457 | 231 | 7 | 37 | 492 | 58 | 505 | 6.13e-135 | 401 |
MsG0580029407.01.T01 | AT4G39000 | 45.532 | 470 | 244 | 7 | 36 | 501 | 25 | 486 | 4.22e-134 | 398 |
MsG0580029407.01.T01 | AT1G22880 | 43.121 | 487 | 258 | 10 | 21 | 501 | 5 | 478 | 4.09e-132 | 393 |
MsG0580029407.01.T01 | AT1G71380 | 43.443 | 488 | 257 | 11 | 20 | 501 | 4 | 478 | 4.02e-131 | 390 |
MsG0580029407.01.T01 | AT4G38990 | 43.232 | 495 | 260 | 10 | 18 | 501 | 5 | 489 | 1.02e-124 | 374 |
MsG0580029407.01.T01 | AT4G02290 | 45.343 | 408 | 213 | 6 | 97 | 503 | 1 | 399 | 1.82e-114 | 345 |
MsG0580029407.01.T01 | AT2G44570 | 44.750 | 400 | 212 | 6 | 15 | 413 | 12 | 403 | 3.71e-111 | 336 |
MsG0580029407.01.T01 | AT1G22880 | 41.523 | 407 | 223 | 9 | 97 | 501 | 1 | 394 | 1.70e-104 | 319 |
MsG0580029407.01.T01 | AT4G39010 | 43.989 | 366 | 194 | 6 | 36 | 397 | 29 | 387 | 4.05e-104 | 318 |
MsG0580029407.01.T01 | AT1G19940 | 45.330 | 364 | 194 | 5 | 36 | 398 | 48 | 407 | 4.15e-97 | 300 |
MsG0580029407.01.T01 | AT5G49720 | 40.936 | 513 | 258 | 17 | 36 | 519 | 108 | 604 | 1.30e-94 | 300 |
MsG0580029407.01.T01 | AT1G65610 | 37.732 | 485 | 263 | 17 | 36 | 496 | 116 | 585 | 5.26e-86 | 278 |
MsG0580029407.01.T01 | AT4G24260 | 41.224 | 490 | 243 | 17 | 36 | 496 | 108 | 581 | 5.23e-85 | 275 |
MsG0580029407.01.T01 | AT4G38990 | 40.997 | 361 | 183 | 6 | 18 | 377 | 5 | 336 | 6.92e-80 | 254 |
MsG0580029407.01.T01 | AT1G22880 | 45.714 | 315 | 154 | 8 | 21 | 329 | 5 | 308 | 4.86e-78 | 248 |
MsG0580029407.01.T01 | AT4G24260 | 38.875 | 391 | 201 | 14 | 36 | 398 | 108 | 488 | 1.74e-53 | 188 |
MsG0580029407.01.T01 | AT4G24260 | 39.660 | 353 | 183 | 11 | 36 | 363 | 108 | 455 | 9.35e-53 | 186 |
Find 101 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCACAAGTTGATTACATTT+TGG | 0.114624 | 5:+96625693 | MsG0580029407.01.T01:CDS |
ACACAATGGAAGCAATTAAA+TGG | 0.182204 | 5:+96622970 | MsG0580029407.01.T01:CDS |
AAGGAGAATAAAGGGTTTAT+TGG | 0.201878 | 5:+96625808 | MsG0580029407.01.T01:CDS |
TTATATATTTATTTATTTAA+AGG | 0.217547 | 5:-96626067 | None:intergenic |
ATGGGCCTAGTTACCCTAAA+AGG | 0.230203 | 5:+96625752 | MsG0580029407.01.T01:CDS |
GCAGGTGATCATGTAAAATT+TGG | 0.275934 | 5:+96622861 | MsG0580029407.01.T01:CDS |
TCAAAATTGTCTTGCCAATC+AGG | 0.280992 | 5:-96625910 | None:intergenic |
GGCTGCCACGTGGCTTTATA+AGG | 0.325090 | 5:+96623815 | MsG0580029407.01.T01:CDS |
ACTAAGTAGCTCATGTTCAT+AGG | 0.326589 | 5:-96625724 | None:intergenic |
AGATCCTAACCCTAATGTTT+TGG | 0.327088 | 5:+96625867 | MsG0580029407.01.T01:CDS |
AACAATGTTGCATGAGAAAA+TGG | 0.330935 | 5:-96622541 | None:intergenic |
ATGTCATATAAGGAGAATAA+AGG | 0.332352 | 5:+96625799 | MsG0580029407.01.T01:CDS |
GTACTCAAGGGTATGATAAT+TGG | 0.334494 | 5:+96625833 | MsG0580029407.01.T01:CDS |
TTTGTGTAGTTGTTTGAGTT+TGG | 0.335226 | 5:+96623702 | MsG0580029407.01.T01:intron |
TGTTATTGTGTAGGTGGATT+TGG | 0.335906 | 5:+96622821 | MsG0580029407.01.T01:intron |
CAAAACTTAGAATTTCTTCA+TGG | 0.342767 | 5:-96625666 | None:intergenic |
ATGAGCTACTTAGTGGGTTA+TGG | 0.343248 | 5:+96625733 | MsG0580029407.01.T01:CDS |
GATCATTCTGCTCTCATTGA+TGG | 0.350259 | 5:+96622704 | MsG0580029407.01.T01:CDS |
AAAGCTCCAACCAAAACATT+AGG | 0.350493 | 5:-96625877 | None:intergenic |
ATATGATTGTAATTCACTTT+TGG | 0.361018 | 5:+96626038 | MsG0580029407.01.T01:CDS |
CTTTGGTTGGTGGTCCTGAT+TGG | 0.363936 | 5:+96625896 | MsG0580029407.01.T01:CDS |
ACCTCTGCCCACAAAACATT+TGG | 0.367502 | 5:-96623026 | None:intergenic |
AGCATCAATTATGTCATATA+AGG | 0.370317 | 5:+96625789 | MsG0580029407.01.T01:CDS |
TTACTGTGACAATGCTTTCA+TGG | 0.375820 | 5:+96622898 | MsG0580029407.01.T01:CDS |
AACGCTGTGCTTCAAAATAA+AGG | 0.388474 | 5:-96622643 | None:intergenic |
TGTCATATAAGGAGAATAAA+GGG | 0.398718 | 5:+96625800 | MsG0580029407.01.T01:CDS |
CACAATGGAAGCAATTAAAT+GGG | 0.416525 | 5:+96622971 | MsG0580029407.01.T01:CDS |
GATTCATGGATGAGTTGTTA+TGG | 0.417460 | 5:+96623793 | MsG0580029407.01.T01:CDS |
TGAGCTACTTAGTGGGTTAT+GGG | 0.420359 | 5:+96625734 | MsG0580029407.01.T01:CDS |
CTTGATGTTGTCATGTCCTC+TGG | 0.421252 | 5:-96623187 | None:intergenic |
ATTAACAATGCTAATAACTT+TGG | 0.421348 | 5:+96623870 | MsG0580029407.01.T01:CDS |
GCTAATAACTTTGGTGGCAC+TGG | 0.422916 | 5:+96623879 | MsG0580029407.01.T01:CDS |
ATTCATGGATGAGTTGTTAT+GGG | 0.425900 | 5:+96623794 | MsG0580029407.01.T01:CDS |
ATCCCAGCTGAACTCTGTTA+TGG | 0.429035 | 5:-96623907 | None:intergenic |
TCTCCAACTCATTGCTTCTC+AGG | 0.431384 | 5:+96623944 | MsG0580029407.01.T01:CDS |
CAAGCGACGCGTTGATTGTA+AGG | 0.439174 | 5:-96622677 | None:intergenic |
TGTAGGTGGATTTGGTTGGA+GGG | 0.441853 | 5:+96622829 | MsG0580029407.01.T01:intron |
GTGTAGGTGGATTTGGTTGG+AGG | 0.449210 | 5:+96622828 | MsG0580029407.01.T01:intron |
AATCCTGGTTCAGATCTTGC+TGG | 0.454479 | 5:+96623235 | MsG0580029407.01.T01:CDS |
TAAGAATGGTGAAGATGAAA+AGG | 0.458583 | 5:-96622571 | None:intergenic |
GTGATATACTCGACCAATAT+AGG | 0.459519 | 5:+96625440 | MsG0580029407.01.T01:CDS |
ATCTAAATACTCTTCTTTGT+CGG | 0.460194 | 5:-96623841 | None:intergenic |
GAGTTTGGAGACAAGTATAG+AGG | 0.461932 | 5:+96623717 | MsG0580029407.01.T01:CDS |
GGTCCATAACAGAGTTCAGC+TGG | 0.465205 | 5:+96623904 | MsG0580029407.01.T01:CDS |
TGCGTCGGTGAGTGGATTCA+TGG | 0.471209 | 5:+96623779 | MsG0580029407.01.T01:CDS |
GGAAAATATGATGCAAGTGT+TGG | 0.472006 | 5:+96623738 | MsG0580029407.01.T01:CDS |
GGGTTTATTGGTTGTACTCA+AGG | 0.473441 | 5:+96625820 | MsG0580029407.01.T01:CDS |
AACAATGCTAATAACTTTGG+TGG | 0.473656 | 5:+96623873 | MsG0580029407.01.T01:CDS |
AAGCTCCAACCAAAACATTA+GGG | 0.475626 | 5:-96625876 | None:intergenic |
TGGAGAGACAGCAGCAGCTA+TGG | 0.477469 | 5:+96623255 | MsG0580029407.01.T01:CDS |
GTTGGAGGGTATTATGATGC+AGG | 0.477816 | 5:+96622843 | MsG0580029407.01.T01:CDS |
GAATATTTGCAAGAAATTGA+AGG | 0.478166 | 5:+96622930 | MsG0580029407.01.T01:CDS |
CCAACCAAAACATTAGGGTT+AGG | 0.487034 | 5:-96625871 | None:intergenic |
CTCATTGATGGTCTAGAACA+AGG | 0.493370 | 5:+96622716 | MsG0580029407.01.T01:CDS |
TTGGTTGGAGCTTTGGTTGG+TGG | 0.496064 | 5:+96625886 | MsG0580029407.01.T01:CDS |
TGTAAAATTTGGTTTACCAA+TGG | 0.496239 | 5:+96622872 | MsG0580029407.01.T01:CDS |
TACTGTGACAATGCTTTCAT+GGG | 0.500919 | 5:+96622899 | MsG0580029407.01.T01:CDS |
AGCTGGGATGTCAAATATGC+AGG | 0.502495 | 5:+96623921 | MsG0580029407.01.T01:CDS |
TATGAACATGAGCTACTTAG+TGG | 0.502664 | 5:+96625726 | MsG0580029407.01.T01:CDS |
TAATTGATGCTCCTCTATGA+TGG | 0.503574 | 5:-96625777 | None:intergenic |
CTTACAATCAACGCGTCGCT+TGG | 0.503904 | 5:+96622678 | MsG0580029407.01.T01:CDS |
GGAGTTGAAGTGGGAAACAA+TGG | 0.506660 | 5:+96622505 | None:intergenic |
AGCTGGAGTTCTTTCCACAT+TGG | 0.508311 | 5:-96625515 | None:intergenic |
CTAAGTAGCTCATGTTCATA+GGG | 0.511542 | 5:-96625723 | None:intergenic |
AAGATAGATGAAAACAATCC+TGG | 0.513053 | 5:+96623220 | MsG0580029407.01.T01:CDS |
GTGACACTGATCATTATTGT+TGG | 0.516338 | 5:+96623158 | MsG0580029407.01.T01:CDS |
TTGAATGTTAGTCGTAAGAA+TGG | 0.521671 | 5:-96622585 | None:intergenic |
AGTTACTATGCGTCGGTGAG+TGG | 0.525539 | 5:+96623771 | MsG0580029407.01.T01:CDS |
TGGGCCTAGTTACCCTAAAA+GGG | 0.540813 | 5:+96625753 | MsG0580029407.01.T01:CDS |
TTGCAAGAAATTGAAGGTGC+TGG | 0.541661 | 5:+96622936 | MsG0580029407.01.T01:CDS |
ATAACTTTGGTGGCACTGGT+TGG | 0.542812 | 5:+96623883 | MsG0580029407.01.T01:CDS |
CTAACATATAGTAATCCAGC+TGG | 0.543246 | 5:-96625532 | None:intergenic |
ATTGTGTAGGTGGATTTGGT+TGG | 0.546260 | 5:+96622825 | MsG0580029407.01.T01:intron |
GTATGATAATTGGTACAGTA+AGG | 0.548590 | 5:+96625843 | MsG0580029407.01.T01:CDS |
GGTTTATTGGTTGTACTCAA+GGG | 0.549775 | 5:+96625821 | MsG0580029407.01.T01:CDS |
GTTTGTTTAGGAGTTGAAGT+GGG | 0.550224 | 5:+96622496 | None:intergenic |
TTACCTGAGAAGCAATGAGT+TGG | 0.557016 | 5:-96623947 | None:intergenic |
TCATTGATGGTCTAGAACAA+GGG | 0.565728 | 5:+96622717 | MsG0580029407.01.T01:CDS |
AATGTGGAAAGAACTCCAGC+TGG | 0.567462 | 5:+96625517 | MsG0580029407.01.T01:CDS |
CCTAAAAGGGTCCATCATAG+AGG | 0.567742 | 5:+96625766 | MsG0580029407.01.T01:CDS |
TAAATACTCTTCTTTGTCGG+TGG | 0.571018 | 5:-96623838 | None:intergenic |
ATTGTCACAGTAAATGCCAT+TGG | 0.581317 | 5:-96622888 | None:intergenic |
GCATATTGAAGATAATAAGA+TGG | 0.583410 | 5:+96626014 | MsG0580029407.01.T01:CDS |
AGTTTGTTTAGGAGTTGAAG+TGG | 0.584517 | 5:+96622495 | None:intergenic |
AAAAGTAAATGAGAGTAATG+TGG | 0.585609 | 5:-96623310 | None:intergenic |
GAATTGTCTTAGGTTGGTGA+TGG | 0.590307 | 5:+96623136 | MsG0580029407.01.T01:intron |
GATTTAGTACCTGTTGAGCA+TGG | 0.594061 | 5:-96623336 | None:intergenic |
CATTGATGGTCTAGAACAAG+GGG | 0.608466 | 5:+96622718 | MsG0580029407.01.T01:CDS |
GATTACTATATGTTAGACAA+TGG | 0.612919 | 5:+96625539 | MsG0580029407.01.T01:CDS |
AGTGAAAAGTTACTATGCGT+CGG | 0.625933 | 5:+96623764 | MsG0580029407.01.T01:CDS |
TCTCCAGCAAGATCTGAACC+AGG | 0.626113 | 5:-96623238 | None:intergenic |
ATGAACATGAGCTACTTAGT+GGG | 0.640186 | 5:+96625727 | MsG0580029407.01.T01:CDS |
GTCCATAACAGAGTTCAGCT+GGG | 0.646191 | 5:+96623905 | MsG0580029407.01.T01:CDS |
TTATTGTTGGCAAAGACCAG+AGG | 0.655563 | 5:+96623171 | MsG0580029407.01.T01:CDS |
AAACATCAATGGAACCAATG+TGG | 0.661851 | 5:+96625501 | MsG0580029407.01.T01:CDS |
GCTGTGCTTCAAAATAAAGG+AGG | 0.685635 | 5:-96622640 | None:intergenic |
AGTTGTTATGGGCTGCCACG+TGG | 0.694285 | 5:+96623805 | MsG0580029407.01.T01:CDS |
ACTGTGACAATGCTTTCATG+GGG | 0.697045 | 5:+96622900 | MsG0580029407.01.T01:CDS |
ACAATGGAAGCAATTAAATG+GGG | 0.705575 | 5:+96622972 | MsG0580029407.01.T01:CDS |
TGGTGAATTACAACACACAA+TGG | 0.711977 | 5:+96622956 | MsG0580029407.01.T01:CDS |
GGTGGCCTTATAAAGCCACG+TGG | 0.802325 | 5:-96623820 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATATTATATTAAAA+AGG | + | Chr5:96624429-96624448 | MsG0580029407.01.T01:intron | 0.0% |
!! | AAAACAAAGCATATATTAAT+TGG | - | Chr5:96623678-96623697 | None:intergenic | 15.0% |
!! | TTCTTTGATTATCTTATTAT+TGG | - | Chr5:96625250-96625269 | None:intergenic | 15.0% |
!! | TTTAAAAACTTTGGATAAAA+TGG | - | Chr5:96623991-96624010 | None:intergenic | 15.0% |
!!! | ATTTTTAATTGAATTGTCTT+AGG | + | Chr5:96623126-96623145 | MsG0580029407.01.T01:intron | 15.0% |
!!! | GAATGACATTTTAAAAATAA+TGG | - | Chr5:96624692-96624711 | None:intergenic | 15.0% |
!!! | TATTTTTAAAATGTCATTCA+TGG | + | Chr5:96624693-96624712 | MsG0580029407.01.T01:intron | 15.0% |
!!! | TTATCCAAAGTTTTTAAAAA+GGG | + | Chr5:96623993-96624012 | MsG0580029407.01.T01:intron | 15.0% |
!!! | TTTATCCAAAGTTTTTAAAA+AGG | + | Chr5:96623992-96624011 | MsG0580029407.01.T01:intron | 15.0% |
!! | ATGCATGAATTAAAGTATAT+AGG | + | Chr5:96624719-96624738 | MsG0580029407.01.T01:intron | 20.0% |
!! | ATGTAACAAAATTAAAGAAG+TGG | - | Chr5:96623082-96623101 | None:intergenic | 20.0% |
!! | ATTAACAATGCTAATAACTT+TGG | + | Chr5:96623870-96623889 | MsG0580029407.01.T01:CDS | 20.0% |
!! | TATATAGGTGTATTATCTTT+AGG | + | Chr5:96624734-96624753 | MsG0580029407.01.T01:intron | 20.0% |
!! | TATTCAACTTTATCTAGATT+TGG | + | Chr5:96624630-96624649 | MsG0580029407.01.T01:intron | 20.0% |
!! | TTTACTAATTTGAAAACGAT+AGG | + | Chr5:96624654-96624673 | MsG0580029407.01.T01:intron | 20.0% |
!!! | AAGACAATTTTGAAGATAAA+AGG | + | Chr5:96625920-96625939 | MsG0580029407.01.T01:CDS | 20.0% |
!!! | AGCATTTTCCTTTTAAAAAA+TGG | + | Chr5:96624204-96624223 | MsG0580029407.01.T01:intron | 20.0% |
!!! | ATATGATTGTAATTCACTTT+TGG | + | Chr5:96626038-96626057 | MsG0580029407.01.T01:CDS | 20.0% |
!!! | ATGCAACTATAATATTGATT+TGG | + | Chr5:96624260-96624279 | MsG0580029407.01.T01:intron | 20.0% |
!!! | ATTTGTTTTCTTAAACACAA+TGG | - | Chr5:96623290-96623309 | None:intergenic | 20.0% |
!!! | GAATTTAATTTGATTTGACT+AGG | + | Chr5:96623553-96623572 | MsG0580029407.01.T01:intron | 20.0% |
!!! | GCTTAATATTTTCAAACAAT+AGG | - | Chr5:96623605-96623624 | None:intergenic | 20.0% |
!!! | GTATCAAACCATTTTTTAAA+AGG | - | Chr5:96624215-96624234 | None:intergenic | 20.0% |
!!! | TGACATCAAAGATTTTAATA+TGG | - | Chr5:96624237-96624256 | None:intergenic | 20.0% |
!!! | TTTTTCCTCAAAATTTTCTT+TGG | + | Chr5:96624585-96624604 | MsG0580029407.01.T01:intron | 20.0% |
! | AAAAGTAAATGAGAGTAATG+TGG | - | Chr5:96623313-96623332 | None:intergenic | 25.0% |
! | AAGAAGTGGAATTGATTAAT+TGG | - | Chr5:96623068-96623087 | None:intergenic | 25.0% |
! | AATATTCTTTAGATCTGTGA+AGG | + | Chr5:96624506-96624525 | MsG0580029407.01.T01:intron | 25.0% |
! | AGCATCAATTATGTCATATA+AGG | + | Chr5:96625789-96625808 | MsG0580029407.01.T01:CDS | 25.0% |
! | ATCTAAATACTCTTCTTTGT+CGG | - | Chr5:96623844-96623863 | None:intergenic | 25.0% |
! | ATGTCATATAAGGAGAATAA+AGG | + | Chr5:96625799-96625818 | MsG0580029407.01.T01:CDS | 25.0% |
! | CAAAACTTAGAATTTCTTCA+TGG | - | Chr5:96625669-96625688 | None:intergenic | 25.0% |
! | GAATATTTGCAAGAAATTGA+AGG | + | Chr5:96622930-96622949 | MsG0580029407.01.T01:CDS | 25.0% |
! | GATTACTATATGTTAGACAA+TGG | + | Chr5:96625539-96625558 | MsG0580029407.01.T01:CDS | 25.0% |
! | GCATATTGAAGATAATAAGA+TGG | + | Chr5:96626014-96626033 | MsG0580029407.01.T01:CDS | 25.0% |
! | GGTTTAAAAACTGCAAAAAA+TGG | - | Chr5:96625399-96625418 | None:intergenic | 25.0% |
! | TGTCATATAAGGAGAATAAA+GGG | + | Chr5:96625800-96625819 | MsG0580029407.01.T01:CDS | 25.0% |
! | TTAATTGAATTGTCTTAGGT+TGG | + | Chr5:96623130-96623149 | MsG0580029407.01.T01:intron | 25.0% |
!! | AATTAAAGTGATGTTGCTTA+TGG | + | Chr5:96624845-96624864 | MsG0580029407.01.T01:intron | 25.0% |
!! | TGTAAAATTTGGTTTACCAA+TGG | + | Chr5:96622872-96622891 | MsG0580029407.01.T01:CDS | 25.0% |
!!! | AACATTCAAGCTTTTGATTA+TGG | + | Chr5:96622599-96622618 | MsG0580029407.01.T01:CDS | 25.0% |
!!! | ATATTGTCACTTCAATTTTG+AGG | - | Chr5:96623509-96623528 | None:intergenic | 25.0% |
!!! | ATCACAAGTTGATTACATTT+TGG | + | Chr5:96625693-96625712 | MsG0580029407.01.T01:CDS | 25.0% |
!!! | ATTGCCCTTTTTAAAAACTT+TGG | - | Chr5:96624000-96624019 | None:intergenic | 25.0% |
!!! | TCACAAGTTGATTACATTTT+GGG | + | Chr5:96625694-96625713 | MsG0580029407.01.T01:CDS | 25.0% |
AACAATGCTAATAACTTTGG+TGG | + | Chr5:96623873-96623892 | MsG0580029407.01.T01:CDS | 30.0% | |
AACAATGTTGCATGAGAAAA+TGG | - | Chr5:96622544-96622563 | None:intergenic | 30.0% | |
AAGATAGATGAAAACAATCC+TGG | + | Chr5:96623220-96623239 | MsG0580029407.01.T01:CDS | 30.0% | |
AAGGAGAATAAAGGGTTTAT+TGG | + | Chr5:96625808-96625827 | MsG0580029407.01.T01:CDS | 30.0% | |
AATCAAAAACTCACATGTCA+TGG | + | Chr5:96625631-96625650 | MsG0580029407.01.T01:CDS | 30.0% | |
ACAATGGAAGCAATTAAATG+GGG | + | Chr5:96622972-96622991 | MsG0580029407.01.T01:CDS | 30.0% | |
ACACAATGGAAGCAATTAAA+TGG | + | Chr5:96622970-96622989 | MsG0580029407.01.T01:CDS | 30.0% | |
ACTCTTATCTGTTAAGTTCT+TGG | + | Chr5:96624543-96624562 | MsG0580029407.01.T01:intron | 30.0% | |
ATTCATGGATGAGTTGTTAT+GGG | + | Chr5:96623794-96623813 | MsG0580029407.01.T01:CDS | 30.0% | |
CACAATGGAAGCAATTAAAT+GGG | + | Chr5:96622971-96622990 | MsG0580029407.01.T01:CDS | 30.0% | |
CTATGTACATGTTATTGTGT+AGG | + | Chr5:96622812-96622831 | MsG0580029407.01.T01:intron | 30.0% | |
GAACTTAACAGATAAGAGTA+TGG | - | Chr5:96624542-96624561 | None:intergenic | 30.0% | |
GAGACATCATTAAAAGTGAT+CGG | + | Chr5:96625172-96625191 | MsG0580029407.01.T01:intron | 30.0% | |
GTATGATAATTGGTACAGTA+AGG | + | Chr5:96625843-96625862 | MsG0580029407.01.T01:CDS | 30.0% | |
TAAGAATGGTGAAGATGAAA+AGG | - | Chr5:96622574-96622593 | None:intergenic | 30.0% | |
TATATCATTCCATATCCTCT+TGG | - | Chr5:96624891-96624910 | None:intergenic | 30.0% | |
TGTCTCAACAAAAACATCAA+TGG | + | Chr5:96625490-96625509 | MsG0580029407.01.T01:CDS | 30.0% | |
TTGAATGTTAGTCGTAAGAA+TGG | - | Chr5:96622588-96622607 | None:intergenic | 30.0% | |
TTGCAAAAAGAGCTACTAAA+GGG | - | Chr5:96625987-96626006 | None:intergenic | 30.0% | |
TTTGCAAAAAGAGCTACTAA+AGG | - | Chr5:96625988-96626007 | None:intergenic | 30.0% | |
! | AAAATTTTCTTTGGTCCATG+TGG | + | Chr5:96624594-96624613 | MsG0580029407.01.T01:intron | 30.0% |
! | ATGACATGTGAGTTTTTGAT+TGG | - | Chr5:96625632-96625651 | None:intergenic | 30.0% |
! | ATGGACCAAAGAAAATTTTG+AGG | - | Chr5:96624593-96624612 | None:intergenic | 30.0% |
! | GAACAATTTTATGCAAACTG+AGG | + | Chr5:96625942-96625961 | MsG0580029407.01.T01:CDS | 30.0% |
! | TATGTTTCTTGTGTTTTGCT+TGG | - | Chr5:96625420-96625439 | None:intergenic | 30.0% |
! | TTTGTGTAGTTGTTTGAGTT+TGG | + | Chr5:96623702-96623721 | MsG0580029407.01.T01:intron | 30.0% |
!! | ACTGCTCTTTTAAAAATGGT+TGG | + | Chr5:96625146-96625165 | MsG0580029407.01.T01:intron | 30.0% |
!! | CTCTTTTAAAAATGGTTGGA+AGG | + | Chr5:96625150-96625169 | MsG0580029407.01.T01:intron | 30.0% |
!! | TAGCACTGCTCTTTTAAAAA+TGG | + | Chr5:96625142-96625161 | MsG0580029407.01.T01:intron | 30.0% |
!!! | AGAATTTTTCAAGACACATG+TGG | - | Chr5:96624161-96624180 | None:intergenic | 30.0% |
AAACATCAATGGAACCAATG+TGG | + | Chr5:96625501-96625520 | MsG0580029407.01.T01:CDS | 35.0% | |
AAAGCTCCAACCAAAACATT+AGG | - | Chr5:96625880-96625899 | None:intergenic | 35.0% | |
AACGCTGTGCTTCAAAATAA+AGG | - | Chr5:96622646-96622665 | None:intergenic | 35.0% | |
AAGCTCCAACCAAAACATTA+GGG | - | Chr5:96625879-96625898 | None:intergenic | 35.0% | |
ACTAAGTAGCTCATGTTCAT+AGG | - | Chr5:96625727-96625746 | None:intergenic | 35.0% | |
AGTGAAAAGTTACTATGCGT+CGG | + | Chr5:96623764-96623783 | MsG0580029407.01.T01:CDS | 35.0% | |
ATGAACATGAGCTACTTAGT+GGG | + | Chr5:96625727-96625746 | MsG0580029407.01.T01:CDS | 35.0% | |
ATTGTCACAGTAAATGCCAT+TGG | - | Chr5:96622891-96622910 | None:intergenic | 35.0% | |
CGTCAAACACTAAAACATGT+TGG | + | Chr5:96623450-96623469 | MsG0580029407.01.T01:intron | 35.0% | |
CTAACATATAGTAATCCAGC+TGG | - | Chr5:96625535-96625554 | None:intergenic | 35.0% | |
CTAAGTAGCTCATGTTCATA+GGG | - | Chr5:96625726-96625745 | None:intergenic | 35.0% | |
GATTCATGGATGAGTTGTTA+TGG | + | Chr5:96623793-96623812 | MsG0580029407.01.T01:CDS | 35.0% | |
GCAGGTGATCATGTAAAATT+TGG | + | Chr5:96622861-96622880 | MsG0580029407.01.T01:CDS | 35.0% | |
GGAAAATATGATGCAAGTGT+TGG | + | Chr5:96623738-96623757 | MsG0580029407.01.T01:CDS | 35.0% | |
GTGACACTGATCATTATTGT+TGG | + | Chr5:96623158-96623177 | MsG0580029407.01.T01:CDS | 35.0% | |
GTGATATACTCGACCAATAT+AGG | + | Chr5:96625440-96625459 | MsG0580029407.01.T01:CDS | 35.0% | |
TAAATACTCTTCTTTGTCGG+TGG | - | Chr5:96623841-96623860 | None:intergenic | 35.0% | |
TAATTGATGCTCCTCTATGA+TGG | - | Chr5:96625780-96625799 | None:intergenic | 35.0% | |
TACTGTGACAATGCTTTCAT+GGG | + | Chr5:96622899-96622918 | MsG0580029407.01.T01:CDS | 35.0% | |
TATGAACATGAGCTACTTAG+TGG | + | Chr5:96625726-96625745 | MsG0580029407.01.T01:CDS | 35.0% | |
TCAAAATTGTCTTGCCAATC+AGG | - | Chr5:96625913-96625932 | None:intergenic | 35.0% | |
TGCAAAAAGAGCTACTAAAG+GGG | - | Chr5:96625986-96626005 | None:intergenic | 35.0% | |
TGGTGAATTACAACACACAA+TGG | + | Chr5:96622956-96622975 | MsG0580029407.01.T01:CDS | 35.0% | |
TGTACATGTTATTGTGTAGG+TGG | + | Chr5:96622815-96622834 | MsG0580029407.01.T01:intron | 35.0% | |
TTACTGTGACAATGCTTTCA+TGG | + | Chr5:96622898-96622917 | MsG0580029407.01.T01:CDS | 35.0% | |
TTAGTCATTGACAAAGCTAG+TGG | + | Chr5:96625214-96625233 | MsG0580029407.01.T01:intron | 35.0% | |
! | ACACTAGTCCAAATGTTTTG+TGG | + | Chr5:96623018-96623037 | MsG0580029407.01.T01:CDS | 35.0% |
! | AGATCCTAACCCTAATGTTT+TGG | + | Chr5:96625867-96625886 | MsG0580029407.01.T01:CDS | 35.0% |
! | CACTAGTCCAAATGTTTTGT+GGG | + | Chr5:96623019-96623038 | MsG0580029407.01.T01:CDS | 35.0% |
! | GCTTGATGTCACTTCAATTA+CGG | - | Chr5:96624310-96624329 | None:intergenic | 35.0% |
! | GGTTTATTGGTTGTACTCAA+GGG | + | Chr5:96625821-96625840 | MsG0580029407.01.T01:CDS | 35.0% |
! | GTACTCAAGGGTATGATAAT+TGG | + | Chr5:96625833-96625852 | MsG0580029407.01.T01:CDS | 35.0% |
! | TCATTGATGGTCTAGAACAA+GGG | + | Chr5:96622717-96622736 | MsG0580029407.01.T01:CDS | 35.0% |
! | TGTCACTTCAATTACGGTTA+TGG | - | Chr5:96624304-96624323 | None:intergenic | 35.0% |
! | TGTTATTGTGTAGGTGGATT+TGG | + | Chr5:96622821-96622840 | MsG0580029407.01.T01:intron | 35.0% |
!! | AATAAAGGAGGCTTTTTGAG+AGG | - | Chr5:96622631-96622650 | None:intergenic | 35.0% |
!! | ACTCTGCTTTTGACCTATAT+TGG | - | Chr5:96625456-96625475 | None:intergenic | 35.0% |
!! | ATAAAGGAGGCTTTTTGAGA+GGG | - | Chr5:96622630-96622649 | None:intergenic | 35.0% |
!!! | TAATGTTTTGGTTGGAGCTT+TGG | + | Chr5:96625879-96625898 | MsG0580029407.01.T01:CDS | 35.0% |
ACTGTGACAATGCTTTCATG+GGG | + | Chr5:96622900-96622919 | MsG0580029407.01.T01:CDS | 40.0% | |
CAAAAACTCACATGTCATGG+AGG | + | Chr5:96625634-96625653 | MsG0580029407.01.T01:CDS | 40.0% | |
CCAACCAAAACATTAGGGTT+AGG | - | Chr5:96625874-96625893 | None:intergenic | 40.0% | |
CGGAGATGTGACTGAAAAAT+AGG | - | Chr5:96625044-96625063 | None:intergenic | 40.0% | |
CTATTTGCCACAATTCAAGG+AGG | + | Chr5:96624085-96624104 | MsG0580029407.01.T01:intron | 40.0% | |
CTTATGGTTGAGCCTAATGT+TGG | + | Chr5:96624861-96624880 | MsG0580029407.01.T01:intron | 40.0% | |
GAGTTTGGAGACAAGTATAG+AGG | + | Chr5:96623717-96623736 | MsG0580029407.01.T01:CDS | 40.0% | |
GATCATTCTGCTCTCATTGA+TGG | + | Chr5:96622704-96622723 | MsG0580029407.01.T01:CDS | 40.0% | |
GATTTAGTACCTGTTGAGCA+TGG | - | Chr5:96623339-96623358 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATACA+CGG | - | Chr5:96625064-96625083 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATTCA+AGG | + | Chr5:96624082-96624101 | MsG0580029407.01.T01:intron | 40.0% | |
GCTGTGCTTCAAAATAAAGG+AGG | - | Chr5:96622643-96622662 | None:intergenic | 40.0% | |
GGCAAATAGTGCATTGTGAT+TGG | - | Chr5:96625091-96625072 | None:intergenic | 40.0% | |
TAGAAATATGCCACTCCACA+TGG | - | Chr5:96624612-96624631 | None:intergenic | 40.0% | |
TATATGTGCCAACATCGTGT+TGG | + | Chr5:96623427-96623446 | MsG0580029407.01.T01:intron | 40.0% | |
TCATCACTTAGTGTGTGTGA+TGG | - | Chr5:96624332-96624351 | None:intergenic | 40.0% | |
TTACCTGAGAAGCAATGAGT+TGG | - | Chr5:96623950-96623969 | None:intergenic | 40.0% | |
TTATTGTTGGCAAAGACCAG+AGG | + | Chr5:96623171-96623190 | MsG0580029407.01.T01:CDS | 40.0% | |
! | ACTTTTACACCATGCTCAAC+AGG | + | Chr5:96623327-96623346 | MsG0580029407.01.T01:CDS | 40.0% |
! | ATTGTGTAGGTGGATTTGGT+TGG | + | Chr5:96622825-96622844 | MsG0580029407.01.T01:intron | 40.0% |
! | CATTGATGGTCTAGAACAAG+GGG | + | Chr5:96622718-96622737 | MsG0580029407.01.T01:CDS | 40.0% |
! | CTCATTGATGGTCTAGAACA+AGG | + | Chr5:96622716-96622735 | MsG0580029407.01.T01:CDS | 40.0% |
! | GGGTTTATTGGTTGTACTCA+AGG | + | Chr5:96625820-96625839 | MsG0580029407.01.T01:CDS | 40.0% |
! | TTGCAAGAAATTGAAGGTGC+TGG | + | Chr5:96622936-96622955 | MsG0580029407.01.T01:CDS | 40.0% |
!! | ATGAGCTACTTAGTGGGTTA+TGG | + | Chr5:96625733-96625752 | MsG0580029407.01.T01:CDS | 40.0% |
!! | GAATTGTCTTAGGTTGGTGA+TGG | + | Chr5:96623136-96623155 | MsG0580029407.01.T01:intron | 40.0% |
!! | TGAGCTACTTAGTGGGTTAT+GGG | + | Chr5:96625734-96625753 | MsG0580029407.01.T01:CDS | 40.0% |
!! | TGCTATTTCTAGCGAGAGAT+AGG | + | Chr5:96624958-96624977 | MsG0580029407.01.T01:intron | 40.0% |
!!! | ATTTTGAAGCACAGCGTTCA+GGG | + | Chr5:96622648-96622667 | MsG0580029407.01.T01:CDS | 40.0% |
!!! | CCTAACCCTAATGTTTTGGT+TGG | + | Chr5:96625871-96625890 | MsG0580029407.01.T01:CDS | 40.0% |
!!! | CTCTATGATGGACCCTTTTA+GGG | - | Chr5:96625768-96625787 | None:intergenic | 40.0% |
!!! | TATTTTGAAGCACAGCGTTC+AGG | + | Chr5:96622647-96622666 | MsG0580029407.01.T01:CDS | 40.0% |
AATCCTGGTTCAGATCTTGC+TGG | + | Chr5:96623235-96623254 | MsG0580029407.01.T01:CDS | 45.0% | |
AATGTGGAAAGAACTCCAGC+TGG | + | Chr5:96625517-96625536 | MsG0580029407.01.T01:CDS | 45.0% | |
ACCTCTGCCCACAAAACATT+TGG | - | Chr5:96623029-96623048 | None:intergenic | 45.0% | |
AGCTGGAGTTCTTTCCACAT+TGG | - | Chr5:96625518-96625537 | None:intergenic | 45.0% | |
AGCTGGGATGTCAAATATGC+AGG | + | Chr5:96623921-96623940 | MsG0580029407.01.T01:CDS | 45.0% | |
AGTCACATCTCCGTGTATTG+TGG | + | Chr5:96625051-96625070 | MsG0580029407.01.T01:intron | 45.0% | |
ATCCCAGCTGAACTCTGTTA+TGG | - | Chr5:96623910-96623929 | None:intergenic | 45.0% | |
ATGGGCCTAGTTACCCTAAA+AGG | + | Chr5:96625752-96625771 | MsG0580029407.01.T01:CDS | 45.0% | |
CCTAAAAGGGTCCATCATAG+AGG | + | Chr5:96625766-96625785 | MsG0580029407.01.T01:CDS | 45.0% | |
CCTAATGTTGGAGAACCAAG+AGG | + | Chr5:96624873-96624892 | MsG0580029407.01.T01:intron | 45.0% | |
CTTGATGTTGTCATGTCCTC+TGG | - | Chr5:96623190-96623209 | None:intergenic | 45.0% | |
GCTGGCAAGTGTTTATTGCA+TGG | + | Chr5:96625004-96625023 | MsG0580029407.01.T01:intron | 45.0% | |
GTCCATAACAGAGTTCAGCT+GGG | + | Chr5:96623905-96623924 | MsG0580029407.01.T01:CDS | 45.0% | |
GTTGGAGAACCAAGAGGATA+TGG | + | Chr5:96624879-96624898 | MsG0580029407.01.T01:intron | 45.0% | |
TAAACACTTGCCAGCTGTGT+CGG | - | Chr5:96624999-96625018 | None:intergenic | 45.0% | |
TCTCCAACTCATTGCTTCTC+AGG | + | Chr5:96623944-96623963 | MsG0580029407.01.T01:CDS | 45.0% | |
TGGGCCTAGTTACCCTAAAA+GGG | + | Chr5:96625753-96625772 | MsG0580029407.01.T01:CDS | 45.0% | |
TTTCTTTGGTCCATGTGGAG+TGG | + | Chr5:96624599-96624618 | MsG0580029407.01.T01:intron | 45.0% | |
! | AGGAGGTGTGGCTGAAAAAT+AGG | + | Chr5:96624102-96624121 | MsG0580029407.01.T01:intron | 45.0% |
! | CCTCTTGGTTCTCCAACATT+AGG | - | Chr5:96624876-96624895 | None:intergenic | 45.0% |
! | GCTAATAACTTTGGTGGCAC+TGG | + | Chr5:96623879-96623898 | MsG0580029407.01.T01:CDS | 45.0% |
! | TCCAAATGTTTTGTGGGCAG+AGG | + | Chr5:96623025-96623044 | MsG0580029407.01.T01:CDS | 45.0% |
! | TGTAGGTGGATTTGGTTGGA+GGG | + | Chr5:96622829-96622848 | MsG0580029407.01.T01:intron | 45.0% |
!! | ATAACTTTGGTGGCACTGGT+TGG | + | Chr5:96623883-96623902 | MsG0580029407.01.T01:CDS | 45.0% |
!! | GTTGGAGGGTATTATGATGC+AGG | + | Chr5:96622843-96622862 | MsG0580029407.01.T01:CDS | 45.0% |
!!! | CCTCTATGATGGACCCTTTT+AGG | - | Chr5:96625769-96625788 | None:intergenic | 45.0% |
!!! | GTTTTGGTTGGAGCTTTGGT+TGG | + | Chr5:96625883-96625902 | MsG0580029407.01.T01:CDS | 45.0% |
!!! | TGGACCCTTTTAGGGTAACT+AGG | - | Chr5:96625760-96625779 | None:intergenic | 45.0% |
!!! | AATAAAATGTAATTTTAAAA+AGG | + | Chr5:96624931-96624950 | MsG0580029407.01.T01:intron | 5.0% |
!!! | ATTTTATCATATAATTATTT+TGG | + | Chr5:96624402-96624421 | MsG0580029407.01.T01:intron | 5.0% |
!!! | TTTTATCATATAATTATTTT+GGG | + | Chr5:96624403-96624422 | MsG0580029407.01.T01:intron | 5.0% |
AAACACTTGCCAGCTGTGTC+GGG | - | Chr5:96624998-96625017 | None:intergenic | 50.0% | |
AGCCACACCTCCTTGAATTG+TGG | - | Chr5:96624095-96624114 | None:intergenic | 50.0% | |
CTTACAATCAACGCGTCGCT+TGG | + | Chr5:96622678-96622697 | MsG0580029407.01.T01:CDS | 50.0% | |
GGTCCATAACAGAGTTCAGC+TGG | + | Chr5:96623904-96623923 | MsG0580029407.01.T01:CDS | 50.0% | |
GTTTGACGCCAACACGATGT+TGG | - | Chr5:96623438-96623457 | None:intergenic | 50.0% | |
TCTCCAGCAAGATCTGAACC+AGG | - | Chr5:96623241-96623260 | None:intergenic | 50.0% | |
TGCCACAATTCAAGGAGGTG+TGG | + | Chr5:96624090-96624109 | MsG0580029407.01.T01:intron | 50.0% | |
! | AGTTACTATGCGTCGGTGAG+TGG | + | Chr5:96623771-96623790 | MsG0580029407.01.T01:CDS | 50.0% |
! | GTGTAGGTGGATTTGGTTGG+AGG | + | Chr5:96622828-96622847 | MsG0580029407.01.T01:intron | 50.0% |
! | TGCAAAGCTAAAGCACCACC+AGG | - | Chr5:96624815-96624834 | None:intergenic | 50.0% |
! | TTGGTTGGAGCTTTGGTTGG+TGG | + | Chr5:96625886-96625905 | MsG0580029407.01.T01:CDS | 50.0% |
!! | CAAGCGACGCGTTGATTGTA+AGG | - | Chr5:96622680-96622699 | None:intergenic | 50.0% |
!! | CTTTGGTTGGTGGTCCTGAT+TGG | + | Chr5:96625896-96625915 | MsG0580029407.01.T01:CDS | 50.0% |
TGGAGAGACAGCAGCAGCTA+TGG | + | Chr5:96623255-96623274 | MsG0580029407.01.T01:CDS | 55.0% | |
! | AGTTGTTATGGGCTGCCACG+TGG | + | Chr5:96623805-96623824 | MsG0580029407.01.T01:CDS | 55.0% |
! | CGAGATTTTCCCGACACAGC+TGG | + | Chr5:96624986-96625005 | MsG0580029407.01.T01:intron | 55.0% |
! | TGCGTCGGTGAGTGGATTCA+TGG | + | Chr5:96623779-96623798 | MsG0580029407.01.T01:CDS | 55.0% |
!! | GGCTGCCACGTGGCTTTATA+AGG | + | Chr5:96623815-96623834 | MsG0580029407.01.T01:CDS | 55.0% |
!! | GGTGGCCTTATAAAGCCACG+TGG | - | Chr5:96623823-96623842 | None:intergenic | 55.0% |
! | AGCATGCACGTGCTGCTGCC+TGG | + | Chr5:96624794-96624813 | MsG0580029407.01.T01:intron | 65.0% |
! | ATGCACGTGCTGCTGCCTGG+TGG | + | Chr5:96624797-96624816 | MsG0580029407.01.T01:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 96622509 | 96626077 | 96622509 | ID=MsG0580029407.01;Name=MsG0580029407.01 |
Chr5 | mRNA | 96622509 | 96626077 | 96622509 | ID=MsG0580029407.01.T01;Parent=MsG0580029407.01;Name=MsG0580029407.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|5|0|522 |
Chr5 | exon | 96622509 | 96622739 | 96622509 | ID=MsG0580029407.01.T01:exon:24522;Parent=MsG0580029407.01.T01 |
Chr5 | exon | 96622834 | 96623046 | 96622834 | ID=MsG0580029407.01.T01:exon:24523;Parent=MsG0580029407.01.T01 |
Chr5 | exon | 96623148 | 96623348 | 96623148 | ID=MsG0580029407.01.T01:exon:24524;Parent=MsG0580029407.01.T01 |
Chr5 | exon | 96623711 | 96623965 | 96623711 | ID=MsG0580029407.01.T01:exon:24525;Parent=MsG0580029407.01.T01 |
Chr5 | exon | 96625409 | 96626077 | 96625409 | ID=MsG0580029407.01.T01:exon:24526;Parent=MsG0580029407.01.T01 |
Chr5 | CDS | 96622509 | 96622739 | 96622509 | ID=MsG0580029407.01.T01:cds;Parent=MsG0580029407.01.T01 |
Chr5 | CDS | 96622834 | 96623046 | 96622834 | ID=MsG0580029407.01.T01:cds;Parent=MsG0580029407.01.T01 |
Chr5 | CDS | 96623148 | 96623348 | 96623148 | ID=MsG0580029407.01.T01:cds;Parent=MsG0580029407.01.T01 |
Chr5 | CDS | 96623711 | 96623965 | 96623711 | ID=MsG0580029407.01.T01:cds;Parent=MsG0580029407.01.T01 |
Chr5 | CDS | 96625409 | 96626077 | 96625409 | ID=MsG0580029407.01.T01:cds;Parent=MsG0580029407.01.T01 |
Gene Sequence |
Protein sequence |