Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012451.01.T01 | XP_013459054.1 | 88.477 | 512 | 30 | 3 | 1 | 512 | 1 | 483 | 0 | 900 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012451.01.T01 | Q8VYG3 | 62.118 | 491 | 156 | 4 | 21 | 510 | 24 | 485 | 0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012451.01.T01 | A0A072UTZ1 | 88.477 | 512 | 30 | 3 | 1 | 512 | 1 | 483 | 0.0 | 900 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380012451.01 | MsG0380017841.01 | PPI |
| MsG0580024373.01 | MsG0380012451.01 | PPI |
| MsG0080048140.01 | MsG0380012451.01 | PPI |
| MsG0380015944.01 | MsG0380012451.01 | PPI |
| MsG0180004835.01 | MsG0380012451.01 | PPI |
| MsG0580029407.01 | MsG0380012451.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012451.01.T01 | MTR_3g023740 | 88.477 | 512 | 30 | 3 | 1 | 512 | 1 | 483 | 0.0 | 900 |
| MsG0380012451.01.T01 | MTR_3g105230 | 79.920 | 498 | 71 | 3 | 1 | 498 | 1 | 469 | 0.0 | 829 |
| MsG0380012451.01.T01 | MTR_5g009970 | 44.421 | 484 | 235 | 7 | 29 | 508 | 40 | 493 | 2.70e-135 | 401 |
| MsG0380012451.01.T01 | MTR_5g085730 | 41.412 | 524 | 269 | 9 | 1 | 511 | 1 | 499 | 8.37e-134 | 398 |
| MsG0380012451.01.T01 | MTR_8g099410 | 43.522 | 494 | 242 | 7 | 27 | 509 | 25 | 492 | 3.95e-132 | 394 |
| MsG0380012451.01.T01 | MTR_5g093590 | 43.145 | 496 | 244 | 6 | 29 | 511 | 33 | 503 | 2.41e-131 | 391 |
| MsG0380012451.01.T01 | MTR_8g099410 | 43.522 | 494 | 242 | 7 | 27 | 509 | 25 | 492 | 1.57e-130 | 393 |
| MsG0380012451.01.T01 | MTR_3g080190 | 42.944 | 496 | 246 | 8 | 29 | 512 | 39 | 509 | 2.03e-130 | 389 |
| MsG0380012451.01.T01 | MTR_5g010000 | 43.478 | 483 | 241 | 5 | 29 | 508 | 39 | 492 | 3.94e-130 | 388 |
| MsG0380012451.01.T01 | MTR_8g104820 | 41.770 | 486 | 247 | 10 | 30 | 506 | 30 | 488 | 5.34e-124 | 372 |
| MsG0380012451.01.T01 | MTR_3g080810 | 41.942 | 484 | 247 | 9 | 30 | 506 | 35 | 491 | 5.91e-124 | 372 |
| MsG0380012451.01.T01 | MTR_3g117500 | 42.236 | 483 | 249 | 9 | 30 | 506 | 24 | 482 | 3.57e-123 | 369 |
| MsG0380012451.01.T01 | MTR_4g074960 | 41.498 | 494 | 251 | 7 | 29 | 510 | 27 | 494 | 4.92e-121 | 369 |
| MsG0380012451.01.T01 | MTR_3g010330 | 41.803 | 488 | 255 | 6 | 25 | 509 | 20 | 481 | 4.05e-116 | 351 |
| MsG0380012451.01.T01 | MTR_4g035955 | 41.615 | 483 | 246 | 7 | 29 | 506 | 13 | 464 | 2.68e-115 | 348 |
| MsG0380012451.01.T01 | MTR_5g009970 | 42.793 | 444 | 220 | 7 | 69 | 508 | 6 | 419 | 1.11e-113 | 343 |
| MsG0380012451.01.T01 | MTR_1g037340 | 41.770 | 486 | 249 | 10 | 30 | 509 | 25 | 482 | 4.99e-113 | 343 |
| MsG0380012451.01.T01 | MTR_4g035930 | 40.041 | 482 | 255 | 8 | 29 | 506 | 14 | 465 | 7.24e-110 | 335 |
| MsG0380012451.01.T01 | MTR_4g035975 | 40.202 | 495 | 252 | 12 | 30 | 510 | 27 | 491 | 1.02e-108 | 333 |
| MsG0380012451.01.T01 | MTR_1g088190 | 40.530 | 491 | 231 | 12 | 30 | 509 | 39 | 479 | 5.46e-108 | 330 |
| MsG0380012451.01.T01 | MTR_3g113720 | 38.306 | 496 | 257 | 10 | 31 | 510 | 58 | 520 | 1.66e-106 | 328 |
| MsG0380012451.01.T01 | MTR_5g009970 | 41.232 | 422 | 214 | 7 | 91 | 508 | 1 | 392 | 1.29e-101 | 311 |
| MsG0380012451.01.T01 | MTR_8g075990 | 37.045 | 494 | 266 | 10 | 31 | 510 | 64 | 526 | 3.29e-94 | 296 |
| MsG0380012451.01.T01 | MTR_2g028480 | 36.923 | 520 | 249 | 16 | 30 | 511 | 111 | 589 | 2.91e-80 | 263 |
| MsG0380012451.01.T01 | MTR_3g090540 | 33.204 | 515 | 275 | 15 | 29 | 511 | 106 | 583 | 2.74e-78 | 257 |
| MsG0380012451.01.T01 | MTR_3g082440 | 35.328 | 518 | 257 | 17 | 30 | 511 | 116 | 591 | 2.45e-76 | 252 |
| MsG0380012451.01.T01 | MTR_5g009970 | 40.960 | 354 | 175 | 7 | 159 | 508 | 1 | 324 | 3.67e-76 | 243 |
| MsG0380012451.01.T01 | MTR_1g088190 | 38.855 | 332 | 144 | 10 | 30 | 351 | 39 | 321 | 4.63e-58 | 196 |
| MsG0380012451.01.T01 | MTR_1g111340 | 57.927 | 164 | 35 | 2 | 276 | 439 | 1 | 130 | 1.49e-52 | 174 |
| MsG0380012451.01.T01 | MTR_7g108925 | 43.709 | 151 | 83 | 2 | 360 | 509 | 50 | 199 | 9.46e-36 | 133 |
| MsG0380012451.01.T01 | MTR_0393s0050 | 44.186 | 129 | 71 | 1 | 360 | 487 | 27 | 155 | 4.80e-26 | 105 |
| MsG0380012451.01.T01 | MTR_4g128810 | 32.143 | 252 | 128 | 10 | 268 | 511 | 117 | 333 | 1.40e-24 | 105 |
| MsG0380012451.01.T01 | MTR_1g037320 | 39.024 | 205 | 99 | 4 | 91 | 295 | 1 | 179 | 4.63e-24 | 102 |
| MsG0380012451.01.T01 | MTR_1g037320 | 42.623 | 122 | 68 | 2 | 386 | 506 | 169 | 289 | 7.72e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012451.01.T01 | AT3G43860 | 62.118 | 491 | 156 | 4 | 21 | 510 | 24 | 485 | 0.0 | 615 |
| MsG0380012451.01.T01 | AT3G43860 | 62.118 | 491 | 156 | 4 | 21 | 510 | 24 | 485 | 0.0 | 615 |
| MsG0380012451.01.T01 | AT4G11050 | 44.309 | 492 | 237 | 7 | 30 | 510 | 26 | 491 | 2.68e-134 | 400 |
| MsG0380012451.01.T01 | AT4G11050 | 44.309 | 492 | 237 | 7 | 30 | 510 | 26 | 491 | 2.30e-133 | 400 |
| MsG0380012451.01.T01 | AT4G11050 | 44.309 | 492 | 237 | 7 | 30 | 510 | 26 | 491 | 2.50e-133 | 400 |
| MsG0380012451.01.T01 | AT1G64390 | 43.496 | 492 | 241 | 7 | 30 | 510 | 25 | 490 | 5.38e-130 | 392 |
| MsG0380012451.01.T01 | AT2G32990 | 43.408 | 493 | 242 | 8 | 27 | 507 | 36 | 503 | 5.58e-129 | 386 |
| MsG0380012451.01.T01 | AT4G09740 | 44.536 | 485 | 236 | 8 | 29 | 510 | 22 | 476 | 8.95e-128 | 381 |
| MsG0380012451.01.T01 | AT4G02290 | 43.585 | 491 | 234 | 10 | 30 | 509 | 52 | 510 | 1.72e-127 | 382 |
| MsG0380012451.01.T01 | AT4G23560 | 44.099 | 483 | 237 | 8 | 31 | 510 | 24 | 476 | 6.23e-126 | 376 |
| MsG0380012451.01.T01 | AT1G70710 | 40.270 | 519 | 269 | 11 | 1 | 510 | 1 | 487 | 1.25e-121 | 366 |
| MsG0380012451.01.T01 | AT1G02800 | 42.974 | 491 | 235 | 11 | 30 | 509 | 43 | 499 | 3.59e-121 | 365 |
| MsG0380012451.01.T01 | AT1G23210 | 40.574 | 488 | 255 | 9 | 30 | 510 | 28 | 487 | 1.12e-117 | 355 |
| MsG0380012451.01.T01 | AT1G22880 | 41.736 | 484 | 252 | 7 | 30 | 510 | 24 | 480 | 1.97e-115 | 350 |
| MsG0380012451.01.T01 | AT1G71380 | 41.736 | 484 | 252 | 7 | 30 | 510 | 24 | 480 | 2.78e-115 | 349 |
| MsG0380012451.01.T01 | AT4G39010 | 40.568 | 493 | 256 | 11 | 28 | 510 | 27 | 492 | 2.50e-114 | 347 |
| MsG0380012451.01.T01 | AT1G48930 | 41.020 | 490 | 252 | 8 | 29 | 507 | 29 | 492 | 2.25e-111 | 344 |
| MsG0380012451.01.T01 | AT2G44540 | 39.192 | 495 | 266 | 8 | 22 | 508 | 23 | 490 | 1.13e-110 | 338 |
| MsG0380012451.01.T01 | AT2G44550 | 39.419 | 482 | 260 | 6 | 30 | 506 | 33 | 487 | 1.24e-110 | 337 |
| MsG0380012451.01.T01 | AT1G19940 | 40.286 | 489 | 241 | 11 | 30 | 503 | 48 | 500 | 2.44e-109 | 335 |
| MsG0380012451.01.T01 | AT1G19940 | 40.286 | 489 | 241 | 11 | 30 | 503 | 48 | 500 | 2.44e-109 | 335 |
| MsG0380012451.01.T01 | AT2G44560 | 38.835 | 515 | 280 | 8 | 1 | 509 | 6 | 491 | 3.11e-109 | 334 |
| MsG0380012451.01.T01 | AT2G44570 | 40.041 | 492 | 261 | 10 | 25 | 509 | 28 | 492 | 2.95e-108 | 332 |
| MsG0380012451.01.T01 | AT1G75680 | 40.702 | 484 | 236 | 11 | 31 | 499 | 58 | 505 | 1.76e-105 | 325 |
| MsG0380012451.01.T01 | AT4G39000 | 37.577 | 487 | 275 | 8 | 30 | 510 | 25 | 488 | 2.32e-100 | 311 |
| MsG0380012451.01.T01 | AT4G38990 | 37.271 | 491 | 268 | 9 | 30 | 506 | 23 | 487 | 6.08e-97 | 302 |
| MsG0380012451.01.T01 | AT4G02290 | 40.465 | 430 | 213 | 10 | 91 | 509 | 1 | 398 | 1.32e-94 | 293 |
| MsG0380012451.01.T01 | AT1G22880 | 39.007 | 423 | 228 | 7 | 91 | 510 | 1 | 396 | 7.29e-88 | 276 |
| MsG0380012451.01.T01 | AT4G39010 | 37.913 | 393 | 209 | 8 | 24 | 407 | 23 | 389 | 4.35e-85 | 268 |
| MsG0380012451.01.T01 | AT5G49720 | 36.346 | 520 | 252 | 17 | 30 | 511 | 108 | 586 | 3.49e-80 | 262 |
| MsG0380012451.01.T01 | AT1G65610 | 34.690 | 516 | 262 | 16 | 30 | 511 | 116 | 590 | 5.68e-76 | 251 |
| MsG0380012451.01.T01 | AT4G24260 | 35.783 | 517 | 259 | 18 | 30 | 511 | 108 | 586 | 2.08e-75 | 249 |
| MsG0380012451.01.T01 | AT1G19940 | 38.010 | 392 | 196 | 9 | 30 | 406 | 48 | 407 | 4.59e-75 | 243 |
| MsG0380012451.01.T01 | AT2G44570 | 38.402 | 388 | 206 | 9 | 25 | 406 | 28 | 388 | 2.33e-73 | 238 |
| MsG0380012451.01.T01 | AT1G22880 | 42.284 | 324 | 159 | 5 | 30 | 351 | 24 | 321 | 2.70e-68 | 223 |
| MsG0380012451.01.T01 | AT4G38990 | 36.915 | 363 | 173 | 7 | 30 | 385 | 23 | 336 | 2.57e-66 | 218 |
| MsG0380012451.01.T01 | AT4G24260 | 33.010 | 412 | 210 | 15 | 30 | 406 | 108 | 488 | 1.66e-44 | 164 |
| MsG0380012451.01.T01 | AT4G24260 | 33.616 | 354 | 172 | 13 | 30 | 351 | 108 | 430 | 1.45e-40 | 152 |
| MsG0380012451.01.T01 | AT3G42153 | 40.206 | 97 | 53 | 3 | 262 | 353 | 13 | 109 | 1.85e-14 | 70.1 |
Find 136 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAACTCCAGCATATTTA+AGG | 0.121059 | 3:+16726179 | None:intergenic |
| TCTAGCAAAGCTTGCTTCTT+TGG | 0.193643 | 3:-16725238 | MsG0380012451.01.T01:CDS |
| TCTTCGTTTGGTGACAAATT+TGG | 0.202470 | 3:+16725435 | None:intergenic |
| TTATATACTTACTTGCATTT+TGG | 0.202567 | 3:+16725797 | None:intergenic |
| AAACAGATGGATTACATATT+AGG | 0.203643 | 3:-16725540 | MsG0380012451.01.T01:intron |
| TAAGAAAATAAATAAATTTA+AGG | 0.206109 | 3:-16727850 | MsG0380012451.01.T01:five_prime_UTR |
| CTACATATAATCTATTTCTT+TGG | 0.227087 | 3:+16726868 | None:intergenic |
| TCGAAAAGCTGCTAGGAAAT+TGG | 0.235838 | 3:+16726482 | None:intergenic |
| AGTAACTACTTCTTTGATTT+AGG | 0.237447 | 3:+16727708 | None:intergenic |
| GAAAACTCCCTTCCAGTAAT+AGG | 0.256510 | 3:-16727385 | MsG0380012451.01.T01:CDS |
| ATTGAATAGGTTGACCTATC+AGG | 0.261586 | 3:-16727065 | MsG0380012451.01.T01:intron |
| TCTCCTCAATAAAGCAAAAT+TGG | 0.261612 | 3:-16726664 | MsG0380012451.01.T01:intron |
| AGGAGACGGCGAGCATATTT+AGG | 0.264621 | 3:+16726681 | None:intergenic |
| CCAAATCCACATGAGCTAAC+TGG | 0.270045 | 3:-16725366 | MsG0380012451.01.T01:CDS |
| TGGATAATAAAAGAGTATAT+TGG | 0.274059 | 3:-16727526 | MsG0380012451.01.T01:CDS |
| GTTATAATGACTAATTTCTA+TGG | 0.282964 | 3:+16725119 | None:intergenic |
| CTAGCAAAGCTTGCTTCTTT+GGG | 0.289529 | 3:-16725237 | MsG0380012451.01.T01:CDS |
| AGATCATACATGGTAGGATT+TGG | 0.292392 | 3:-16725501 | MsG0380012451.01.T01:CDS |
| GCTGGAGACAATGTGAAATA+TGG | 0.300456 | 3:-16727029 | MsG0380012451.01.T01:CDS |
| CCCTTCTACTGCTCCTATTC+AGG | 0.300909 | 3:-16726419 | MsG0380012451.01.T01:CDS |
| CCAGTTAGCTCATGTGGATT+TGG | 0.301161 | 3:+16725366 | None:intergenic |
| TCTCCAAGGGACCCTATTAC+TGG | 0.323891 | 3:+16727373 | None:intergenic |
| TACATATAATCTATTTCTTT+GGG | 0.324966 | 3:+16726869 | None:intergenic |
| ATTTGCTTGTAAGGACTATC+AGG | 0.344561 | 3:+16726070 | None:intergenic |
| ACTTCTTTGATTTAGGTGTT+TGG | 0.347511 | 3:+16727715 | None:intergenic |
| AAAATCTCTCATCTTCTTAG+AGG | 0.350453 | 3:-16727420 | MsG0380012451.01.T01:CDS |
| ATATTCCCAACCAATACTAT+AGG | 0.356429 | 3:+16726525 | None:intergenic |
| AACAGATGGATTACATATTA+GGG | 0.358207 | 3:-16725539 | MsG0380012451.01.T01:intron |
| GTCAAATTGATTTGCTTGTA+AGG | 0.358875 | 3:+16726061 | None:intergenic |
| ACCATGTATGATCTTCCTTC+AGG | 0.359145 | 3:+16725510 | None:intergenic |
| ATTTGAAGTAACAAATGAAA+TGG | 0.366616 | 3:-16726946 | MsG0380012451.01.T01:CDS |
| GGATAATAAAAGAGTATATT+GGG | 0.374475 | 3:-16727525 | MsG0380012451.01.T01:CDS |
| GCCTGAATAGGAGCAGTAGA+AGG | 0.378778 | 3:+16726418 | None:intergenic |
| AGGAAACATGATACTTGTTA+AGG | 0.381146 | 3:-16727471 | MsG0380012451.01.T01:CDS |
| ATATTCAAAATGCCATTAGA+TGG | 0.385203 | 3:-16726920 | MsG0380012451.01.T01:CDS |
| CAACAATGATGATCATCAAC+TGG | 0.390024 | 3:+16726834 | None:intergenic |
| CGAAAAGCTGCTAGGAAATT+GGG | 0.395308 | 3:+16726483 | None:intergenic |
| TTGGCACTGAAGCACCTCTA+TGG | 0.398776 | 3:+16725454 | None:intergenic |
| ATGTTTGTGAAATGTGTATT+GGG | 0.403208 | 3:+16727596 | None:intergenic |
| GATCATACATGGTAGGATTT+GGG | 0.403815 | 3:-16725500 | MsG0380012451.01.T01:CDS |
| TTCTTAGAGGCGCAAAGATC+AGG | 0.404475 | 3:-16727407 | MsG0380012451.01.T01:CDS |
| TATGTGCAAGGTTCGGTCTT+AGG | 0.410154 | 3:+16725285 | None:intergenic |
| CAAATCCACATGAGCTAACT+GGG | 0.410353 | 3:-16725365 | MsG0380012451.01.T01:CDS |
| AGCAAGCCATGTTGCAATGA+TGG | 0.422452 | 3:+16727502 | None:intergenic |
| CTATGGTGAGCTTGTGTTGG+TGG | 0.424826 | 3:+16725471 | None:intergenic |
| GAATTGGCAAAATCTCATAA+AGG | 0.424938 | 3:-16726461 | MsG0380012451.01.T01:CDS |
| ATAATCTGTACCCCATCTAA+TGG | 0.430183 | 3:+16726908 | None:intergenic |
| TCACAGTTACTACATTATCA+TGG | 0.431674 | 3:-16726992 | MsG0380012451.01.T01:CDS |
| GGACAGTTTATCTCTTCGTT+TGG | 0.432535 | 3:+16725423 | None:intergenic |
| AAAACTCCCTTCCAGTAATA+GGG | 0.434684 | 3:-16727384 | MsG0380012451.01.T01:CDS |
| AATAGATTATATGTAGAGGT+AGG | 0.435556 | 3:-16726861 | MsG0380012451.01.T01:CDS |
| AGCTGAAACTTCTGCTGCTA+TGG | 0.438179 | 3:-16726736 | MsG0380012451.01.T01:CDS |
| TAGCCATTTCTTAAAGCTTG+TGG | 0.441135 | 3:+16725401 | None:intergenic |
| AAAGTACTAGTAAGTTTAAG+AGG | 0.443676 | 3:+16727770 | None:intergenic |
| TAACAAGTATCATGTTTCCT+TGG | 0.445707 | 3:+16727474 | None:intergenic |
| TTTGAAGTAACAAATGAAAT+GGG | 0.446128 | 3:-16726945 | MsG0380012451.01.T01:CDS |
| GTCCCACAAGCTTTAAGAAA+TGG | 0.446283 | 3:-16725404 | MsG0380012451.01.T01:CDS |
| ACATACATTATAGCCTGAAT+AGG | 0.446803 | 3:+16726406 | None:intergenic |
| GATGTTTGTGAAATGTGTAT+TGG | 0.448000 | 3:+16727595 | None:intergenic |
| TTGAACTTGTCGTTGATGTC+AGG | 0.451159 | 3:+16725327 | None:intergenic |
| ATTGAAGTAACCTATAGTAT+TGG | 0.455922 | 3:-16726535 | MsG0380012451.01.T01:CDS |
| AGTTGGGACCTTAAATATGC+TGG | 0.461271 | 3:-16726187 | MsG0380012451.01.T01:CDS |
| TCTCATAAAGGAACCTATGA+TGG | 0.468029 | 3:-16726449 | MsG0380012451.01.T01:CDS |
| GGAAACATGATACTTGTTAA+GGG | 0.470689 | 3:-16727470 | MsG0380012451.01.T01:CDS |
| AAATGAAATGAAACAAACTA+AGG | 0.471037 | 3:+16727806 | None:intergenic |
| ACATGGCTTGCTTTGTTCCA+AGG | 0.473298 | 3:-16727491 | MsG0380012451.01.T01:CDS |
| GGAGACTCAGCAGTGGATGA+TGG | 0.473612 | 3:-16727350 | MsG0380012451.01.T01:CDS |
| AGCCATTTCTTAAAGCTTGT+GGG | 0.474167 | 3:+16725402 | None:intergenic |
| ACTTGCCAAATATAATCAAA+AGG | 0.476084 | 3:-16725868 | MsG0380012451.01.T01:CDS |
| TTGAATAGGTTGACCTATCA+GGG | 0.476637 | 3:-16727064 | MsG0380012451.01.T01:intron |
| GAGCTAACTGGGGCCATTGT+TGG | 0.483453 | 3:-16725354 | MsG0380012451.01.T01:CDS |
| ATAGATTATATGTAGAGGTA+GGG | 0.484273 | 3:-16726860 | MsG0380012451.01.T01:CDS |
| AGTTGATGATCATCATTGTT+GGG | 0.484523 | 3:-16726832 | MsG0380012451.01.T01:CDS |
| GAAGGGACATTCTCCATCAT+AGG | 0.487500 | 3:+16726436 | None:intergenic |
| TATTCAAAATGCCATTAGAT+GGG | 0.489997 | 3:-16726919 | MsG0380012451.01.T01:CDS |
| TTCTGCTTGTTTGTGATGGC+GGG | 0.494151 | 3:+16727745 | None:intergenic |
| AAGCAAATCAATTTGACTCC+TGG | 0.494274 | 3:-16726055 | MsG0380012451.01.T01:intron |
| CAGTTGATGATCATCATTGT+TGG | 0.497946 | 3:-16726833 | MsG0380012451.01.T01:CDS |
| TGCTAGAACACCGGCTGCAA+GGG | 0.505101 | 3:+16725254 | None:intergenic |
| AGTAACCTATAGTATTGGTT+GGG | 0.506840 | 3:-16726530 | MsG0380012451.01.T01:CDS |
| CTTCCAGTAATAGGGTCCCT+TGG | 0.507808 | 3:-16727376 | MsG0380012451.01.T01:CDS |
| TAAGGGTCAATTTAATTACA+AGG | 0.517252 | 3:-16727453 | MsG0380012451.01.T01:CDS |
| CTGCTGAGTCTCCTCTCCAA+GGG | 0.526075 | 3:+16727360 | None:intergenic |
| CACAGTTACTACATTATCAT+GGG | 0.526401 | 3:-16726991 | MsG0380012451.01.T01:CDS |
| CCTCTATGGTGAGCTTGTGT+TGG | 0.530222 | 3:+16725468 | None:intergenic |
| TTGCTAGAACACCGGCTGCA+AGG | 0.530745 | 3:+16725253 | None:intergenic |
| TACGTTAATTCCCTTGCAGC+CGG | 0.531438 | 3:-16725264 | MsG0380012451.01.T01:CDS |
| ATGTATAGGATGAGCTAATG+TGG | 0.532805 | 3:-16726300 | MsG0380012451.01.T01:intron |
| CTAGTGTTGCAGAATTCAGT+TGG | 0.541518 | 3:-16726204 | MsG0380012451.01.T01:CDS |
| CTAACTGGGGCCATTGTTGG+TGG | 0.545679 | 3:-16725351 | MsG0380012451.01.T01:CDS |
| AAGTAACCTATAGTATTGGT+TGG | 0.545980 | 3:-16726531 | MsG0380012451.01.T01:CDS |
| GCTGGTGGCATATTGTGTAT+TGG | 0.548328 | 3:+16725923 | None:intergenic |
| TTTGGCAAAATCAAGGAGAT+GGG | 0.548916 | 3:+16725815 | None:intergenic |
| CTGGAGACAATGTGAAATAT+GGG | 0.550838 | 3:-16727028 | MsG0380012451.01.T01:CDS |
| ATGGCCCCAGTTAGCTCATG+TGG | 0.556380 | 3:+16725360 | None:intergenic |
| AGCAAGCTTTGCTAGAACAC+CGG | 0.556441 | 3:+16725245 | None:intergenic |
| CTTGAAGCATTTAAAGCACA+TGG | 0.561349 | 3:-16726118 | MsG0380012451.01.T01:CDS |
| TTTCTGCTTGTTTGTGATGG+CGG | 0.563290 | 3:+16727744 | None:intergenic |
| TAGTGTTGCAGAATTCAGTT+GGG | 0.566041 | 3:-16726203 | MsG0380012451.01.T01:CDS |
| ACTGCTGAGTCTCCTCTCCA+AGG | 0.567602 | 3:+16727359 | None:intergenic |
| GGGTTTATTCATATGAGAGA+TGG | 0.573447 | 3:-16725948 | MsG0380012451.01.T01:CDS |
| TATAATCAAAAGGTCAAATG+TGG | 0.574640 | 3:-16725858 | MsG0380012451.01.T01:CDS |
| ATTAACGTATGTGCAAGGTT+CGG | 0.574763 | 3:+16725278 | None:intergenic |
| TAGATTATATGTAGAGGTAG+GGG | 0.575052 | 3:-16726859 | MsG0380012451.01.T01:CDS |
| CATGGCTATACATGGCAACA+AGG | 0.579656 | 3:-16726270 | MsG0380012451.01.T01:CDS |
| TCCTGAAGGAAGATCATACA+TGG | 0.586107 | 3:-16725511 | MsG0380012451.01.T01:CDS |
| GGCTGCAACATGGCTATACA+TGG | 0.586171 | 3:-16726278 | MsG0380012451.01.T01:CDS |
| TCAGCTGCAATCTCAGTACC+AGG | 0.587163 | 3:+16726753 | None:intergenic |
| AAGAAATAGATTATATGTAG+AGG | 0.589086 | 3:-16726865 | MsG0380012451.01.T01:CDS |
| CAAGGGACCCTATTACTGGA+AGG | 0.589819 | 3:+16727377 | None:intergenic |
| CCTGAATAGGAGCAGTAGAA+GGG | 0.590602 | 3:+16726419 | None:intergenic |
| CCAACACAAGCTCACCATAG+AGG | 0.591866 | 3:-16725468 | MsG0380012451.01.T01:CDS |
| TGCCAATTCGAAAAGCTGCT+AGG | 0.594083 | 3:+16726475 | None:intergenic |
| GATGTCAGGTCCACCAACAA+TGG | 0.594292 | 3:+16725341 | None:intergenic |
| AAATGAAACAAACTAAGGGA+TGG | 0.604842 | 3:+16727811 | None:intergenic |
| AATGAAATGAAACAAACTAA+GGG | 0.612872 | 3:+16727807 | None:intergenic |
| AAGGGACCCTATTACTGGAA+GGG | 0.614059 | 3:+16727378 | None:intergenic |
| AGCTAATGTGGGCTGCAACA+TGG | 0.614595 | 3:-16726288 | MsG0380012451.01.T01:CDS |
| GAAGGAAGATCATACATGGT+AGG | 0.615068 | 3:-16725507 | MsG0380012451.01.T01:CDS |
| GTAGTAACTGTGAATGCCAT+TGG | 0.617815 | 3:+16727002 | None:intergenic |
| AGTGAACAAGAAAGATGTGC+TGG | 0.624046 | 3:+16725905 | None:intergenic |
| AGTAATAGGGTCCCTTGGAG+AGG | 0.629528 | 3:-16727371 | MsG0380012451.01.T01:CDS |
| TGTGAAATATGGGCTACCAA+TGG | 0.631971 | 3:-16727018 | MsG0380012451.01.T01:CDS |
| GCTTGTAAGGACTATCAGGA+AGG | 0.637627 | 3:+16726074 | None:intergenic |
| TGTATAGGATGAGCTAATGT+GGG | 0.640123 | 3:-16726299 | MsG0380012451.01.T01:intron |
| ATTCAAAATGCCATTAGATG+GGG | 0.646428 | 3:-16726918 | MsG0380012451.01.T01:CDS |
| AGGGAATTAACGTATGTGCA+AGG | 0.656102 | 3:+16725273 | None:intergenic |
| AACAATGATGATCATCAACT+GGG | 0.657794 | 3:+16726835 | None:intergenic |
| ATTGGGCCATCATTGCAACA+TGG | 0.669498 | 3:-16727508 | MsG0380012451.01.T01:CDS |
| TGAATAGGTTGACCTATCAG+GGG | 0.682641 | 3:-16727063 | MsG0380012451.01.T01:intron |
| TTGGAGAGGAGACTCAGCAG+TGG | 0.683745 | 3:-16727357 | MsG0380012451.01.T01:CDS |
| GAATAGGTTGACCTATCAGG+GGG | 0.686550 | 3:-16727062 | MsG0380012451.01.T01:intron |
| AGTTACTACATTATCATGGG+CGG | 0.687711 | 3:-16726988 | MsG0380012451.01.T01:CDS |
| TTAATTGATAGTAACACACC+TGG | 0.700118 | 3:-16726771 | MsG0380012451.01.T01:CDS |
| GAACAAGAAAGATGTGCTGG+TGG | 0.714032 | 3:+16725908 | None:intergenic |
| AAATCCACATGAGCTAACTG+GGG | 0.756843 | 3:-16725364 | MsG0380012451.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATGTATTTTTTTAAG+GGG | + | Chr3:16727244-16727263 | None:intergenic | 10.0% |
| !! | ATATTTAAATATGATTATGC+AGG | - | Chr3:16727029-16727048 | MsG0380012451.01.T01:CDS | 15.0% |
| !! | CTCAAAATAAAATCATTATT+AGG | - | Chr3:16725701-16725720 | MsG0380012451.01.T01:intron | 15.0% |
| !!! | TACATATAATCTATTTCTTT+GGG | + | Chr3:16726135-16726154 | None:intergenic | 15.0% |
| !!! | TTGATTTTATTGAATTGAAT+AGG | - | Chr3:16725923-16725942 | MsG0380012451.01.T01:CDS | 15.0% |
| !! | AAATGAAATGAAACAAACTA+AGG | + | Chr3:16725198-16725217 | None:intergenic | 20.0% |
| !! | AAGAAATAGATTATATGTAG+AGG | - | Chr3:16726136-16726155 | MsG0380012451.01.T01:CDS | 20.0% |
| !! | AATGAAATGAAACAAACTAA+GGG | + | Chr3:16725197-16725216 | None:intergenic | 20.0% |
| !! | ACGTAGAAAATGAATAATTT+GGG | - | Chr3:16725891-16725910 | MsG0380012451.01.T01:CDS | 20.0% |
| !! | ACTAAGAGTGAATTAATATT+GGG | - | Chr3:16726649-16726668 | MsG0380012451.01.T01:intron | 20.0% |
| !! | ATGTAATTGGTATATTGTTT+AGG | + | Chr3:16726400-16726419 | None:intergenic | 20.0% |
| !! | GTTATAATGACTAATTTCTA+TGG | + | Chr3:16727885-16727904 | None:intergenic | 20.0% |
| !! | TACGTAGAAAATGAATAATT+TGG | - | Chr3:16725890-16725909 | MsG0380012451.01.T01:CDS | 20.0% |
| !! | TTATCCCAATAAAAAAAAGT+TGG | + | Chr3:16725451-16725470 | None:intergenic | 20.0% |
| !!! | ATGAAATTGATCTTCAATTT+TGG | + | Chr3:16725786-16725805 | None:intergenic | 20.0% |
| !!! | ATTTGAAGTAACAAATGAAA+TGG | - | Chr3:16726055-16726074 | MsG0380012451.01.T01:intron | 20.0% |
| !!! | CATTTTTCTATACATGTAAT+TGG | + | Chr3:16726413-16726432 | None:intergenic | 20.0% |
| !!! | CTACATATAATCTATTTCTT+TGG | + | Chr3:16726136-16726155 | None:intergenic | 20.0% |
| !!! | GATAATTCAACTTTTTCTAA+CGG | - | Chr3:16725832-16725851 | MsG0380012451.01.T01:CDS | 20.0% |
| !!! | GGATAATAAAAGAGTATATT+GGG | - | Chr3:16725476-16725495 | MsG0380012451.01.T01:CDS | 20.0% |
| !!! | TCTACCAACTTTTTTTTATT+GGG | - | Chr3:16725444-16725463 | MsG0380012451.01.T01:CDS | 20.0% |
| !!! | TGGATAATAAAAGAGTATAT+TGG | - | Chr3:16725475-16725494 | MsG0380012451.01.T01:CDS | 20.0% |
| !!! | TTATATACTTACTTGCATTT+TGG | + | Chr3:16727207-16727226 | None:intergenic | 20.0% |
| !!! | TTCTACCAACTTTTTTTTAT+TGG | - | Chr3:16725443-16725462 | MsG0380012451.01.T01:CDS | 20.0% |
| !!! | TTTGAAGTAACAAATGAAAT+GGG | - | Chr3:16726056-16726075 | MsG0380012451.01.T01:CDS | 20.0% |
| !!! | TTTGACCTTTTGATTATATT+TGG | + | Chr3:16727141-16727160 | None:intergenic | 20.0% |
| ! | AAATGTACATGTAATTTACC+AGG | + | Chr3:16726967-16726986 | None:intergenic | 25.0% |
| ! | AATAGATTATATGTAGAGGT+AGG | - | Chr3:16726140-16726159 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | ACTTGCCAAATATAATCAAA+AGG | - | Chr3:16727133-16727152 | MsG0380012451.01.T01:intron | 25.0% |
| ! | ATAGATTATATGTAGAGGTA+GGG | - | Chr3:16726141-16726160 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | ATATTCAAAATGCCATTAGA+TGG | - | Chr3:16726081-16726100 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | ATCAATATGCCTAAAAACAA+TGG | + | Chr3:16726300-16726319 | None:intergenic | 25.0% |
| ! | ATGTTTGTGAAATGTGTATT+GGG | + | Chr3:16725408-16725427 | None:intergenic | 25.0% |
| ! | ATTGAAGTAACCTATAGTAT+TGG | - | Chr3:16726466-16726485 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | CACTAAGAGTGAATTAATAT+TGG | - | Chr3:16726648-16726667 | MsG0380012451.01.T01:intron | 25.0% |
| ! | TAAATGAGTGGTTATGTTTA+TGG | + | Chr3:16725364-16725383 | None:intergenic | 25.0% |
| ! | TAAGGGTCAATTTAATTACA+AGG | - | Chr3:16725548-16725567 | MsG0380012451.01.T01:intron | 25.0% |
| ! | TAGAGTGACTATCTAATATT+TGG | - | Chr3:16727433-16727452 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | TATAATCAAAAGGTCAAATG+TGG | - | Chr3:16727143-16727162 | MsG0380012451.01.T01:intron | 25.0% |
| ! | TATTCAAAATGCCATTAGAT+GGG | - | Chr3:16726082-16726101 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | TGTTAAAAATGTAGTTGAGA+GGG | - | Chr3:16727829-16727848 | MsG0380012451.01.T01:five_prime_UTR | 25.0% |
| ! | TTAAATATGATTATGCAGGT+GGG | - | Chr3:16727033-16727052 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | TTAATGTGATGCATATGTAT+AGG | - | Chr3:16726687-16726706 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | TTGTTAAAAATGTAGTTGAG+AGG | - | Chr3:16727828-16727847 | MsG0380012451.01.T01:five_prime_UTR | 25.0% |
| ! | TTTAAATATGATTATGCAGG+TGG | - | Chr3:16727032-16727051 | MsG0380012451.01.T01:CDS | 25.0% |
| ! | TTTGTCTCTAAATATTAGTG+AGG | - | Chr3:16725760-16725779 | MsG0380012451.01.T01:intron | 25.0% |
| !! | AAAGTACTAGTAAGTTTAAG+AGG | + | Chr3:16725234-16725253 | None:intergenic | 25.0% |
| !! | AACTACATTTTTAACAACGT+TGG | + | Chr3:16727825-16727844 | None:intergenic | 25.0% |
| !! | AATCTACTACAACTTTTAGT+AGG | + | Chr3:16727860-16727879 | None:intergenic | 25.0% |
| !! | ACTACATTTTTAACAACGTT+GGG | + | Chr3:16727824-16727843 | None:intergenic | 25.0% |
| !! | AGTAACTACTTCTTTGATTT+AGG | + | Chr3:16725296-16725315 | None:intergenic | 25.0% |
| !!! | AAACAGATGGATTACATATT+AGG | - | Chr3:16727461-16727480 | MsG0380012451.01.T01:CDS | 25.0% |
| !!! | AACAGATGGATTACATATTA+GGG | - | Chr3:16727462-16727481 | MsG0380012451.01.T01:CDS | 25.0% |
| !!! | ATACCAATTTTGCTTTATTG+AGG | + | Chr3:16726343-16726362 | None:intergenic | 25.0% |
| !!! | TTACATTTTGAAGGTCAAAA+AGG | - | Chr3:16726859-16726878 | MsG0380012451.01.T01:CDS | 25.0% |
| !!! | TTTTTTATTGGGATAACTCA+TGG | - | Chr3:16725455-16725474 | MsG0380012451.01.T01:CDS | 25.0% |
| AAAATCTCTCATCTTCTTAG+AGG | - | Chr3:16725581-16725600 | MsG0380012451.01.T01:intron | 30.0% | |
| AAATGAAACAAACTAAGGGA+TGG | + | Chr3:16725193-16725212 | None:intergenic | 30.0% | |
| AACAATGATGATCATCAACT+GGG | + | Chr3:16726169-16726188 | None:intergenic | 30.0% | |
| ACATACATTATAGCCTGAAT+AGG | + | Chr3:16726598-16726617 | None:intergenic | 30.0% | |
| ATATTAGGGAAAAATCCTGA+AGG | - | Chr3:16727476-16727495 | MsG0380012451.01.T01:CDS | 30.0% | |
| ATATTCCCAACCAATACTAT+AGG | + | Chr3:16726479-16726498 | None:intergenic | 30.0% | |
| ATATTTGGATGGTAAACAGA+TGG | - | Chr3:16727448-16727467 | MsG0380012451.01.T01:CDS | 30.0% | |
| ATTCAAAATGCCATTAGATG+GGG | - | Chr3:16726083-16726102 | MsG0380012451.01.T01:CDS | 30.0% | |
| CACAGTTACTACATTATCAT+GGG | - | Chr3:16726010-16726029 | MsG0380012451.01.T01:intron | 30.0% | |
| CACTCTTAGTGAATTAAGAA+AGG | + | Chr3:16726639-16726658 | None:intergenic | 30.0% | |
| GAATTGGCAAAATCTCATAA+AGG | - | Chr3:16726540-16726559 | MsG0380012451.01.T01:CDS | 30.0% | |
| GATGTTTGTGAAATGTGTAT+TGG | + | Chr3:16725409-16725428 | None:intergenic | 30.0% | |
| GTGACTATCTAATATTTGGA+TGG | - | Chr3:16727437-16727456 | MsG0380012451.01.T01:CDS | 30.0% | |
| TAACAAGTATCATGTTTCCT+TGG | + | Chr3:16725530-16725549 | None:intergenic | 30.0% | |
| TAGATTATATGTAGAGGTAG+GGG | - | Chr3:16726142-16726161 | MsG0380012451.01.T01:CDS | 30.0% | |
| TATAAAGACGTGTAAATGAG+TGG | + | Chr3:16725376-16725395 | None:intergenic | 30.0% | |
| TCACAGTTACTACATTATCA+TGG | - | Chr3:16726009-16726028 | MsG0380012451.01.T01:intron | 30.0% | |
| TCTCCTCAATAAAGCAAAAT+TGG | - | Chr3:16726337-16726356 | MsG0380012451.01.T01:intron | 30.0% | |
| ! | ACTTCTTTGATTTAGGTGTT+TGG | + | Chr3:16725289-16725308 | None:intergenic | 30.0% |
| ! | AGGAAACATGATACTTGTTA+AGG | - | Chr3:16725530-16725549 | MsG0380012451.01.T01:CDS | 30.0% |
| ! | CTACATTTTTAACAACGTTG+GGG | + | Chr3:16727823-16727842 | None:intergenic | 30.0% |
| ! | CTCTTTGTCTTCATATTTTC+TGG | + | Chr3:16726200-16726219 | None:intergenic | 30.0% |
| ! | GGAAACATGATACTTGTTAA+GGG | - | Chr3:16725531-16725550 | MsG0380012451.01.T01:CDS | 30.0% |
| ! | TATTTTCTGCTTGTTTGTGA+TGG | + | Chr3:16725263-16725282 | None:intergenic | 30.0% |
| ! | TTAATTGATAGTAACACACC+TGG | - | Chr3:16726230-16726249 | MsG0380012451.01.T01:CDS | 30.0% |
| ! | TTTGTCTTCATATTTTCTGG+TGG | + | Chr3:16726197-16726216 | None:intergenic | 30.0% |
| !! | AAGTAACCTATAGTATTGGT+TGG | - | Chr3:16726470-16726489 | MsG0380012451.01.T01:CDS | 30.0% |
| !! | AGTAACCTATAGTATTGGTT+GGG | - | Chr3:16726471-16726490 | MsG0380012451.01.T01:CDS | 30.0% |
| !! | AGTTGATGATCATCATTGTT+GGG | - | Chr3:16726169-16726188 | MsG0380012451.01.T01:CDS | 30.0% |
| !! | ATTTTGCTTTATTGAGGAGA+CGG | + | Chr3:16726337-16726356 | None:intergenic | 30.0% |
| !! | GTCAAATTGATTTGCTTGTA+AGG | + | Chr3:16726943-16726962 | None:intergenic | 30.0% |
| AAAACTCCCTTCCAGTAATA+GGG | - | Chr3:16725617-16725636 | MsG0380012451.01.T01:intron | 35.0% | |
| AAGCAAATCAATTTGACTCC+TGG | - | Chr3:16726946-16726965 | MsG0380012451.01.T01:CDS | 35.0% | |
| AGATCATACATGGTAGGATT+TGG | - | Chr3:16727500-16727519 | MsG0380012451.01.T01:CDS | 35.0% | |
| AGCCATTTCTTAAAGCTTGT+GGG | + | Chr3:16727602-16727621 | None:intergenic | 35.0% | |
| AGTTACTACATTATCATGGG+CGG | - | Chr3:16726013-16726032 | MsG0380012451.01.T01:intron | 35.0% | |
| ATAATCTGTACCCCATCTAA+TGG | + | Chr3:16726096-16726115 | None:intergenic | 35.0% | |
| ATGTATAGGATGAGCTAATG+TGG | - | Chr3:16726701-16726720 | MsG0380012451.01.T01:CDS | 35.0% | |
| ATTAACGTATGTGCAAGGTT+CGG | + | Chr3:16727726-16727745 | None:intergenic | 35.0% | |
| ATTTGCTTGTAAGGACTATC+AGG | + | Chr3:16726934-16726953 | None:intergenic | 35.0% | |
| CAACAATGATGATCATCAAC+TGG | + | Chr3:16726170-16726189 | None:intergenic | 35.0% | |
| CTGGAGACAATGTGAAATAT+GGG | - | Chr3:16725973-16725992 | MsG0380012451.01.T01:intron | 35.0% | |
| CTTGAACTCCAGCATATTTA+AGG | + | Chr3:16726825-16726844 | None:intergenic | 35.0% | |
| GATCATACATGGTAGGATTT+GGG | - | Chr3:16727501-16727520 | MsG0380012451.01.T01:CDS | 35.0% | |
| GGGTTTATTCATATGAGAGA+TGG | - | Chr3:16727053-16727072 | MsG0380012451.01.T01:CDS | 35.0% | |
| TAGCCATTTCTTAAAGCTTG+TGG | + | Chr3:16727603-16727622 | None:intergenic | 35.0% | |
| TAGTGTTGCAGAATTCAGTT+GGG | - | Chr3:16726798-16726817 | MsG0380012451.01.T01:CDS | 35.0% | |
| TCTCATAAAGGAACCTATGA+TGG | - | Chr3:16726552-16726571 | MsG0380012451.01.T01:CDS | 35.0% | |
| TGTATAGGATGAGCTAATGT+GGG | - | Chr3:16726702-16726721 | MsG0380012451.01.T01:CDS | 35.0% | |
| TTTGGCAAAATCAAGGAGAT+GGG | + | Chr3:16727189-16727208 | None:intergenic | 35.0% | |
| ! | ATTGAATAGGTTGACCTATC+AGG | - | Chr3:16725936-16725955 | MsG0380012451.01.T01:CDS | 35.0% |
| ! | CTCACTCAGTTACATTTTGA+AGG | - | Chr3:16726850-16726869 | MsG0380012451.01.T01:CDS | 35.0% |
| ! | CTTGAAGCATTTAAAGCACA+TGG | - | Chr3:16726883-16726902 | MsG0380012451.01.T01:CDS | 35.0% |
| ! | TCTTCGTTTGGTGACAAATT+TGG | + | Chr3:16727569-16727588 | None:intergenic | 35.0% |
| ! | TTGAATAGGTTGACCTATCA+GGG | - | Chr3:16725937-16725956 | MsG0380012451.01.T01:CDS | 35.0% |
| ! | TTTTGGCAAAATCAAGGAGA+TGG | + | Chr3:16727190-16727209 | None:intergenic | 35.0% |
| !! | CAGTTGATGATCATCATTGT+TGG | - | Chr3:16726168-16726187 | MsG0380012451.01.T01:CDS | 35.0% |
| !! | CTGCTTCTTCCATTGTTTTT+AGG | - | Chr3:16726288-16726307 | MsG0380012451.01.T01:CDS | 35.0% |
| !! | CTTGCATTTTGGCAAAATCA+AGG | + | Chr3:16727196-16727215 | None:intergenic | 35.0% |
| AAATCCACATGAGCTAACTG+GGG | - | Chr3:16727637-16727656 | MsG0380012451.01.T01:intron | 40.0% | |
| ACCATGTATGATCTTCCTTC+AGG | + | Chr3:16727494-16727513 | None:intergenic | 40.0% | |
| AGGGAATTAACGTATGTGCA+AGG | + | Chr3:16727731-16727750 | None:intergenic | 40.0% | |
| AGTGAACAAGAAAGATGTGC+TGG | + | Chr3:16727099-16727118 | None:intergenic | 40.0% | |
| AGTTGGGACCTTAAATATGC+TGG | - | Chr3:16726814-16726833 | MsG0380012451.01.T01:CDS | 40.0% | |
| CAAATCCACATGAGCTAACT+GGG | - | Chr3:16727636-16727655 | MsG0380012451.01.T01:intron | 40.0% | |
| CATCATAATATCCCCCTGAT+AGG | + | Chr3:16725953-16725972 | None:intergenic | 40.0% | |
| CGAAAAGCTGCTAGGAAATT+GGG | + | Chr3:16726521-16726540 | None:intergenic | 40.0% | |
| CTAGTGTTGCAGAATTCAGT+TGG | - | Chr3:16726797-16726816 | MsG0380012451.01.T01:CDS | 40.0% | |
| GAAAACTCCCTTCCAGTAAT+AGG | - | Chr3:16725616-16725635 | MsG0380012451.01.T01:intron | 40.0% | |
| GAAGGAAGATCATACATGGT+AGG | - | Chr3:16727494-16727513 | MsG0380012451.01.T01:CDS | 40.0% | |
| GCTGGAGACAATGTGAAATA+TGG | - | Chr3:16725972-16725991 | MsG0380012451.01.T01:intron | 40.0% | |
| GGACAGTTTATCTCTTCGTT+TGG | + | Chr3:16727581-16727600 | None:intergenic | 40.0% | |
| GTAGTAACTGTGAATGCCAT+TGG | + | Chr3:16726002-16726021 | None:intergenic | 40.0% | |
| TCCTGAAGGAAGATCATACA+TGG | - | Chr3:16727490-16727509 | MsG0380012451.01.T01:CDS | 40.0% | |
| TCGAAAAGCTGCTAGGAAAT+TGG | + | Chr3:16726522-16726541 | None:intergenic | 40.0% | |
| TTGAACTTGTCGTTGATGTC+AGG | + | Chr3:16727677-16727696 | None:intergenic | 40.0% | |
| TTTCTGCTTGTTTGTGATGG+CGG | + | Chr3:16725260-16725279 | None:intergenic | 40.0% | |
| ! | CTAGCAAAGCTTGCTTCTTT+GGG | - | Chr3:16727764-16727783 | MsG0380012451.01.T01:five_prime_UTR | 40.0% |
| ! | TCTAGCAAAGCTTGCTTCTT+TGG | - | Chr3:16727763-16727782 | MsG0380012451.01.T01:five_prime_UTR | 40.0% |
| ! | TGAATAGGTTGACCTATCAG+GGG | - | Chr3:16725938-16725957 | MsG0380012451.01.T01:CDS | 40.0% |
| ! | TGTGAAATATGGGCTACCAA+TGG | - | Chr3:16725983-16726002 | MsG0380012451.01.T01:intron | 40.0% |
| ! | TTCCTAGCAGCTTTTCGAAT+TGG | - | Chr3:16726524-16726543 | MsG0380012451.01.T01:CDS | 40.0% |
| !! | GTCCCACAAGCTTTAAGAAA+TGG | - | Chr3:16727597-16727616 | MsG0380012451.01.T01:five_prime_UTR | 40.0% |
| AAGGGACCCTATTACTGGAA+GGG | + | Chr3:16725626-16725645 | None:intergenic | 45.0% | |
| AGCAAGCCATGTTGCAATGA+TGG | + | Chr3:16725502-16725521 | None:intergenic | 45.0% | |
| AGCAAGCTTTGCTAGAACAC+CGG | + | Chr3:16727759-16727778 | None:intergenic | 45.0% | |
| AGCTGAAACTTCTGCTGCTA+TGG | - | Chr3:16726265-16726284 | MsG0380012451.01.T01:CDS | 45.0% | |
| ATTGGGCCATCATTGCAACA+TGG | - | Chr3:16725493-16725512 | MsG0380012451.01.T01:CDS | 45.0% | |
| CATGGCTATACATGGCAACA+AGG | - | Chr3:16726731-16726750 | MsG0380012451.01.T01:CDS | 45.0% | |
| CCAAATCCACATGAGCTAAC+TGG | - | Chr3:16727635-16727654 | MsG0380012451.01.T01:intron | 45.0% | |
| CCAGTTAGCTCATGTGGATT+TGG | + | Chr3:16727638-16727657 | None:intergenic | 45.0% | |
| CCTGAATAGGAGCAGTAGAA+GGG | + | Chr3:16726585-16726604 | None:intergenic | 45.0% | |
| GAACAAGAAAGATGTGCTGG+TGG | + | Chr3:16727096-16727115 | None:intergenic | 45.0% | |
| GAAGGGACATTCTCCATCAT+AGG | + | Chr3:16726568-16726587 | None:intergenic | 45.0% | |
| GCTGGTGGCATATTGTGTAT+TGG | + | Chr3:16727081-16727100 | None:intergenic | 45.0% | |
| GCTTGTAAGGACTATCAGGA+AGG | + | Chr3:16726930-16726949 | None:intergenic | 45.0% | |
| TACGTTAATTCCCTTGCAGC+CGG | - | Chr3:16727737-16727756 | MsG0380012451.01.T01:five_prime_UTR | 45.0% | |
| TCAGGGGGATATTATGATGC+TGG | - | Chr3:16725954-16725973 | MsG0380012451.01.T01:intron | 45.0% | |
| TGCCAATTCGAAAAGCTGCT+AGG | + | Chr3:16726529-16726548 | None:intergenic | 45.0% | |
| TTCTGCTTGTTTGTGATGGC+GGG | + | Chr3:16725259-16725278 | None:intergenic | 45.0% | |
| ! | GAATAGGTTGACCTATCAGG+GGG | - | Chr3:16725939-16725958 | MsG0380012451.01.T01:CDS | 45.0% |
| ! | TATGTGCAAGGTTCGGTCTT+AGG | + | Chr3:16727719-16727738 | None:intergenic | 45.0% |
| ! | TTCTTAGAGGCGCAAAGATC+AGG | - | Chr3:16725594-16725613 | MsG0380012451.01.T01:intron | 45.0% |
| !! | ACATGGCTTGCTTTGTTCCA+AGG | - | Chr3:16725510-16725529 | MsG0380012451.01.T01:CDS | 45.0% |
| !! | TAAGAAAATAAATAAATTTA+AGG | - | Chr3:16725151-16725170 | MsG0380012451.01.T01:three_prime_UTR | 5.0% |
| !!! | ATAAATAATGTATTTTTTTA+AGG | + | Chr3:16727246-16727265 | None:intergenic | 5.0% |
| !!! | TAAATAATGTATTTTTTTAA+GGG | + | Chr3:16727245-16727264 | None:intergenic | 5.0% |
| AGGAGACGGCGAGCATATTT+AGG | + | Chr3:16726323-16726342 | None:intergenic | 50.0% | |
| AGTAATAGGGTCCCTTGGAG+AGG | - | Chr3:16725630-16725649 | MsG0380012451.01.T01:intron | 50.0% | |
| CAAGGGACCCTATTACTGGA+AGG | + | Chr3:16725627-16725646 | None:intergenic | 50.0% | |
| CCAACACAAGCTCACCATAG+AGG | - | Chr3:16727533-16727552 | MsG0380012451.01.T01:exon | 50.0% | |
| CCCTTCTACTGCTCCTATTC+AGG | - | Chr3:16726582-16726601 | MsG0380012451.01.T01:intron | 50.0% | |
| CCTCTATGGTGAGCTTGTGT+TGG | + | Chr3:16727536-16727555 | None:intergenic | 50.0% | |
| CTATGGTGAGCTTGTGTTGG+TGG | + | Chr3:16727533-16727552 | None:intergenic | 50.0% | |
| CTTCCAGTAATAGGGTCCCT+TGG | - | Chr3:16725625-16725644 | MsG0380012451.01.T01:intron | 50.0% | |
| GATGTCAGGTCCACCAACAA+TGG | + | Chr3:16727663-16727682 | None:intergenic | 50.0% | |
| GCCTGAATAGGAGCAGTAGA+AGG | + | Chr3:16726586-16726605 | None:intergenic | 50.0% | |
| GGCTGCAACATGGCTATACA+TGG | - | Chr3:16726723-16726742 | MsG0380012451.01.T01:CDS | 50.0% | |
| TCAGCTGCAATCTCAGTACC+AGG | + | Chr3:16726251-16726270 | None:intergenic | 50.0% | |
| TCTCCAAGGGACCCTATTAC+TGG | + | Chr3:16725631-16725650 | None:intergenic | 50.0% | |
| ! | AGCTAATGTGGGCTGCAACA+TGG | - | Chr3:16726713-16726732 | MsG0380012451.01.T01:CDS | 50.0% |
| ! | TTGGCACTGAAGCACCTCTA+TGG | + | Chr3:16727550-16727569 | None:intergenic | 50.0% |
| ACTGCTGAGTCTCCTCTCCA+AGG | + | Chr3:16725645-16725664 | None:intergenic | 55.0% | |
| ATGGCCCCAGTTAGCTCATG+TGG | + | Chr3:16727644-16727663 | None:intergenic | 55.0% | |
| CTAACTGGGGCCATTGTTGG+TGG | - | Chr3:16727650-16727669 | MsG0380012451.01.T01:intron | 55.0% | |
| CTGCTGAGTCTCCTCTCCAA+GGG | + | Chr3:16725644-16725663 | None:intergenic | 55.0% | |
| GAGCTAACTGGGGCCATTGT+TGG | - | Chr3:16727647-16727666 | MsG0380012451.01.T01:intron | 55.0% | |
| GGAGACTCAGCAGTGGATGA+TGG | - | Chr3:16725651-16725670 | MsG0380012451.01.T01:intron | 55.0% | |
| TTGGAGAGGAGACTCAGCAG+TGG | - | Chr3:16725644-16725663 | MsG0380012451.01.T01:intron | 55.0% | |
| ! | TGCTAGAACACCGGCTGCAA+GGG | + | Chr3:16727750-16727769 | None:intergenic | 55.0% |
| ! | TTGCTAGAACACCGGCTGCA+AGG | + | Chr3:16727751-16727770 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 16725094 | 16727929 | 16725094 | ID=MsG0380012451.01;Name=MsG0380012451.01 |
| Chr3 | mRNA | 16725094 | 16727929 | 16725094 | ID=MsG0380012451.01.T01;Parent=MsG0380012451.01;Name=MsG0380012451.01.T01;_AED=0.48;_eAED=0.53;_QI=298|0.66|0.85|1|0.5|0.57|7|139|512 |
| Chr3 | exon | 16725094 | 16725556 | 16725094 | ID=MsG0380012451.01.T01:exon:21928;Parent=MsG0380012451.01.T01 |
| Chr3 | exon | 16725809 | 16725972 | 16725809 | ID=MsG0380012451.01.T01:exon:21927;Parent=MsG0380012451.01.T01 |
| Chr3 | exon | 16726056 | 16726314 | 16726056 | ID=MsG0380012451.01.T01:exon:21926;Parent=MsG0380012451.01.T01 |
| Chr3 | exon | 16726408 | 16726572 | 16726408 | ID=MsG0380012451.01.T01:exon:21925;Parent=MsG0380012451.01.T01 |
| Chr3 | exon | 16726665 | 16727078 | 16726665 | ID=MsG0380012451.01.T01:exon:21924;Parent=MsG0380012451.01.T01 |
| Chr3 | exon | 16727337 | 16727624 | 16727337 | ID=MsG0380012451.01.T01:exon:21923;Parent=MsG0380012451.01.T01 |
| Chr3 | exon | 16727707 | 16727929 | 16727707 | ID=MsG0380012451.01.T01:exon:21922;Parent=MsG0380012451.01.T01 |
| Chr3 | five_prime_UTR | 16727707 | 16727929 | 16727707 | ID=MsG0380012451.01.T01:five_prime_utr;Parent=MsG0380012451.01.T01 |
| Chr3 | five_prime_UTR | 16727550 | 16727624 | 16727550 | ID=MsG0380012451.01.T01:five_prime_utr;Parent=MsG0380012451.01.T01 |
| Chr3 | CDS | 16727337 | 16727549 | 16727337 | ID=MsG0380012451.01.T01:cds;Parent=MsG0380012451.01.T01 |
| Chr3 | CDS | 16726665 | 16727078 | 16726665 | ID=MsG0380012451.01.T01:cds;Parent=MsG0380012451.01.T01 |
| Chr3 | CDS | 16726408 | 16726572 | 16726408 | ID=MsG0380012451.01.T01:cds;Parent=MsG0380012451.01.T01 |
| Chr3 | CDS | 16726056 | 16726314 | 16726056 | ID=MsG0380012451.01.T01:cds;Parent=MsG0380012451.01.T01 |
| Chr3 | CDS | 16725809 | 16725972 | 16725809 | ID=MsG0380012451.01.T01:cds;Parent=MsG0380012451.01.T01 |
| Chr3 | CDS | 16725233 | 16725556 | 16725233 | ID=MsG0380012451.01.T01:cds;Parent=MsG0380012451.01.T01 |
| Chr3 | three_prime_UTR | 16725094 | 16725232 | 16725094 | ID=MsG0380012451.01.T01:three_prime_utr;Parent=MsG0380012451.01.T01 |
| Gene Sequence |
| Protein sequence |
