Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012452.01.T01 | XP_013459054.1 | 92.547 | 483 | 10 | 1 | 1 | 457 | 1 | 483 | 0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012452.01.T01 | Q8VYG3 | 64.286 | 476 | 141 | 3 | 9 | 455 | 10 | 485 | 0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012452.01.T01 | A0A072UTZ1 | 92.547 | 483 | 10 | 1 | 1 | 457 | 1 | 483 | 0.0 | 923 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380012452.01 | MsG0580024373.01 | PPI |
| MsG0380012452.01 | MsG0380017841.01 | PPI |
| MsG0580029407.01 | MsG0380012452.01 | PPI |
| MsG0380012452.01 | MsG0080048140.01 | PPI |
| MsG0380015944.01 | MsG0380012452.01 | PPI |
| MsG0180004835.01 | MsG0380012452.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012452.01.T01 | MTR_3g023740 | 92.547 | 483 | 10 | 1 | 1 | 457 | 1 | 483 | 0.0 | 923 |
| MsG0380012452.01.T01 | MTR_3g105230 | 83.369 | 469 | 52 | 1 | 1 | 443 | 1 | 469 | 0.0 | 831 |
| MsG0380012452.01.T01 | MTR_5g009970 | 45.154 | 454 | 220 | 4 | 29 | 453 | 40 | 493 | 1.03e-136 | 402 |
| MsG0380012452.01.T01 | MTR_5g085730 | 42.084 | 499 | 246 | 6 | 1 | 456 | 1 | 499 | 6.67e-136 | 401 |
| MsG0380012452.01.T01 | MTR_5g093590 | 44.161 | 471 | 220 | 5 | 29 | 456 | 33 | 503 | 6.02e-134 | 395 |
| MsG0380012452.01.T01 | MTR_5g010000 | 44.714 | 454 | 222 | 4 | 29 | 453 | 39 | 492 | 2.62e-132 | 391 |
| MsG0380012452.01.T01 | MTR_3g080190 | 43.096 | 478 | 230 | 5 | 22 | 457 | 32 | 509 | 1.80e-131 | 390 |
| MsG0380012452.01.T01 | MTR_8g099410 | 43.923 | 469 | 221 | 5 | 27 | 454 | 25 | 492 | 6.41e-131 | 388 |
| MsG0380012452.01.T01 | MTR_8g099410 | 43.923 | 469 | 221 | 5 | 27 | 454 | 25 | 492 | 2.13e-129 | 388 |
| MsG0380012452.01.T01 | MTR_3g117500 | 43.167 | 461 | 221 | 6 | 30 | 451 | 24 | 482 | 2.29e-124 | 370 |
| MsG0380012452.01.T01 | MTR_8g104820 | 42.641 | 462 | 222 | 9 | 30 | 451 | 30 | 488 | 6.95e-123 | 367 |
| MsG0380012452.01.T01 | MTR_4g074960 | 41.880 | 468 | 231 | 5 | 29 | 455 | 27 | 494 | 4.99e-122 | 369 |
| MsG0380012452.01.T01 | MTR_3g080810 | 42.391 | 460 | 224 | 7 | 30 | 451 | 35 | 491 | 1.65e-121 | 363 |
| MsG0380012452.01.T01 | MTR_3g010330 | 42.888 | 464 | 229 | 5 | 25 | 454 | 20 | 481 | 1.30e-116 | 350 |
| MsG0380012452.01.T01 | MTR_4g035955 | 41.921 | 458 | 225 | 4 | 29 | 451 | 13 | 464 | 3.13e-116 | 349 |
| MsG0380012452.01.T01 | MTR_5g009970 | 43.478 | 414 | 205 | 4 | 69 | 453 | 6 | 419 | 6.51e-115 | 344 |
| MsG0380012452.01.T01 | MTR_1g037340 | 43.043 | 460 | 225 | 7 | 30 | 454 | 25 | 482 | 6.42e-113 | 341 |
| MsG0380012452.01.T01 | MTR_4g035930 | 39.648 | 454 | 241 | 2 | 29 | 451 | 14 | 465 | 1.10e-112 | 340 |
| MsG0380012452.01.T01 | MTR_4g035975 | 40.938 | 469 | 230 | 10 | 30 | 455 | 27 | 491 | 8.24e-110 | 333 |
| MsG0380012452.01.T01 | MTR_1g088190 | 40.821 | 463 | 214 | 8 | 30 | 454 | 39 | 479 | 3.40e-107 | 327 |
| MsG0380012452.01.T01 | MTR_3g113720 | 38.889 | 468 | 238 | 7 | 31 | 455 | 58 | 520 | 1.78e-106 | 326 |
| MsG0380012452.01.T01 | MTR_5g009970 | 41.837 | 392 | 199 | 4 | 91 | 453 | 1 | 392 | 1.08e-102 | 312 |
| MsG0380012452.01.T01 | MTR_8g075990 | 37.821 | 468 | 243 | 7 | 31 | 455 | 64 | 526 | 1.09e-95 | 298 |
| MsG0380012452.01.T01 | MTR_2g028480 | 37.475 | 491 | 231 | 14 | 30 | 456 | 111 | 589 | 1.00e-81 | 265 |
| MsG0380012452.01.T01 | MTR_3g090540 | 33.204 | 515 | 265 | 15 | 8 | 451 | 76 | 582 | 6.51e-79 | 256 |
| MsG0380012452.01.T01 | MTR_5g009970 | 41.975 | 324 | 159 | 4 | 159 | 453 | 1 | 324 | 6.51e-77 | 243 |
| MsG0380012452.01.T01 | MTR_3g082440 | 35.306 | 490 | 240 | 16 | 30 | 456 | 116 | 591 | 3.35e-75 | 247 |
| MsG0380012452.01.T01 | MTR_1g088190 | 39.145 | 304 | 127 | 6 | 30 | 296 | 39 | 321 | 5.74e-57 | 192 |
| MsG0380012452.01.T01 | MTR_1g111340 | 57.317 | 164 | 36 | 2 | 221 | 384 | 1 | 130 | 3.14e-52 | 172 |
| MsG0380012452.01.T01 | MTR_7g108925 | 43.709 | 151 | 83 | 2 | 305 | 454 | 50 | 199 | 2.75e-36 | 133 |
| MsG0380012452.01.T01 | MTR_4g128810 | 27.594 | 424 | 193 | 16 | 43 | 456 | 14 | 333 | 3.04e-31 | 123 |
| MsG0380012452.01.T01 | MTR_0393s0050 | 43.411 | 129 | 72 | 1 | 305 | 432 | 27 | 155 | 2.15e-25 | 102 |
| MsG0380012452.01.T01 | MTR_1g037320 | 39.665 | 179 | 79 | 1 | 91 | 240 | 1 | 179 | 5.89e-24 | 101 |
| MsG0380012452.01.T01 | MTR_1g037320 | 42.623 | 122 | 68 | 2 | 331 | 451 | 169 | 289 | 8.21e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012452.01.T01 | AT3G43860 | 64.286 | 476 | 141 | 3 | 9 | 455 | 10 | 485 | 0.0 | 620 |
| MsG0380012452.01.T01 | AT3G43860 | 64.286 | 476 | 141 | 3 | 9 | 455 | 10 | 485 | 0.0 | 620 |
| MsG0380012452.01.T01 | AT4G11050 | 44.968 | 467 | 215 | 5 | 30 | 455 | 26 | 491 | 8.49e-135 | 399 |
| MsG0380012452.01.T01 | AT4G11050 | 44.968 | 467 | 215 | 5 | 30 | 455 | 26 | 491 | 6.52e-134 | 400 |
| MsG0380012452.01.T01 | AT4G11050 | 44.968 | 467 | 215 | 5 | 30 | 455 | 26 | 491 | 7.48e-134 | 399 |
| MsG0380012452.01.T01 | AT2G32990 | 43.590 | 468 | 222 | 5 | 27 | 452 | 36 | 503 | 3.01e-129 | 384 |
| MsG0380012452.01.T01 | AT1G64390 | 44.111 | 467 | 219 | 5 | 30 | 455 | 25 | 490 | 3.87e-129 | 387 |
| MsG0380012452.01.T01 | AT4G09740 | 45.614 | 456 | 218 | 5 | 29 | 455 | 22 | 476 | 8.97e-129 | 382 |
| MsG0380012452.01.T01 | AT4G23560 | 45.374 | 454 | 218 | 5 | 31 | 455 | 24 | 476 | 2.25e-127 | 378 |
| MsG0380012452.01.T01 | AT4G02290 | 43.290 | 462 | 222 | 6 | 30 | 454 | 52 | 510 | 5.12e-124 | 370 |
| MsG0380012452.01.T01 | AT1G70710 | 42.457 | 464 | 225 | 7 | 30 | 455 | 28 | 487 | 1.70e-122 | 366 |
| MsG0380012452.01.T01 | AT1G02800 | 43.290 | 462 | 220 | 7 | 30 | 454 | 43 | 499 | 1.58e-120 | 361 |
| MsG0380012452.01.T01 | AT1G23210 | 41.595 | 464 | 229 | 7 | 30 | 455 | 28 | 487 | 2.07e-119 | 358 |
| MsG0380012452.01.T01 | AT4G39010 | 41.026 | 468 | 234 | 8 | 28 | 455 | 27 | 492 | 8.38e-115 | 346 |
| MsG0380012452.01.T01 | AT1G71380 | 42.391 | 460 | 228 | 6 | 30 | 455 | 24 | 480 | 8.06e-114 | 343 |
| MsG0380012452.01.T01 | AT1G22880 | 42.174 | 460 | 229 | 6 | 30 | 455 | 24 | 480 | 1.00e-112 | 340 |
| MsG0380012452.01.T01 | AT2G44550 | 40.789 | 456 | 235 | 4 | 30 | 451 | 33 | 487 | 1.99e-112 | 340 |
| MsG0380012452.01.T01 | AT2G44540 | 40.959 | 459 | 235 | 5 | 30 | 453 | 33 | 490 | 2.69e-112 | 340 |
| MsG0380012452.01.T01 | AT1G48930 | 41.164 | 464 | 233 | 4 | 29 | 452 | 29 | 492 | 1.94e-111 | 342 |
| MsG0380012452.01.T01 | AT1G19940 | 41.048 | 458 | 226 | 7 | 30 | 448 | 48 | 500 | 1.20e-110 | 336 |
| MsG0380012452.01.T01 | AT1G19940 | 41.048 | 458 | 226 | 7 | 30 | 448 | 48 | 500 | 1.20e-110 | 336 |
| MsG0380012452.01.T01 | AT2G44560 | 39.468 | 489 | 258 | 6 | 1 | 454 | 6 | 491 | 9.65e-109 | 331 |
| MsG0380012452.01.T01 | AT2G44570 | 40.773 | 466 | 239 | 6 | 25 | 454 | 28 | 492 | 1.56e-108 | 330 |
| MsG0380012452.01.T01 | AT1G75680 | 41.943 | 453 | 219 | 7 | 31 | 444 | 58 | 505 | 1.01e-106 | 327 |
| MsG0380012452.01.T01 | AT4G39000 | 38.065 | 465 | 248 | 5 | 30 | 455 | 25 | 488 | 1.12e-101 | 313 |
| MsG0380012452.01.T01 | AT4G38990 | 38.380 | 469 | 238 | 10 | 30 | 451 | 23 | 487 | 5.41e-98 | 303 |
| MsG0380012452.01.T01 | AT4G02290 | 40.150 | 401 | 200 | 6 | 91 | 454 | 1 | 398 | 2.07e-91 | 283 |
| MsG0380012452.01.T01 | AT1G22880 | 39.599 | 399 | 204 | 6 | 91 | 455 | 1 | 396 | 5.04e-86 | 269 |
| MsG0380012452.01.T01 | AT4G39010 | 38.859 | 368 | 185 | 6 | 24 | 352 | 23 | 389 | 1.09e-85 | 268 |
| MsG0380012452.01.T01 | AT5G49720 | 36.660 | 491 | 235 | 15 | 30 | 456 | 108 | 586 | 7.87e-80 | 259 |
| MsG0380012452.01.T01 | AT1G19940 | 38.781 | 361 | 181 | 5 | 30 | 351 | 48 | 407 | 1.77e-76 | 245 |
| MsG0380012452.01.T01 | AT4G24260 | 36.456 | 491 | 236 | 16 | 30 | 456 | 108 | 586 | 5.17e-76 | 249 |
| MsG0380012452.01.T01 | AT1G65610 | 34.836 | 488 | 244 | 15 | 30 | 456 | 116 | 590 | 9.32e-75 | 246 |
| MsG0380012452.01.T01 | AT2G44570 | 39.227 | 362 | 184 | 5 | 25 | 351 | 28 | 388 | 3.30e-74 | 239 |
| MsG0380012452.01.T01 | AT4G38990 | 41.270 | 315 | 170 | 5 | 30 | 330 | 23 | 336 | 4.99e-73 | 234 |
| MsG0380012452.01.T01 | AT1G22880 | 43.333 | 300 | 135 | 4 | 30 | 296 | 24 | 321 | 1.56e-66 | 217 |
| MsG0380012452.01.T01 | AT4G24260 | 33.938 | 386 | 186 | 13 | 30 | 351 | 108 | 488 | 1.30e-45 | 166 |
| MsG0380012452.01.T01 | AT4G24260 | 34.756 | 328 | 148 | 11 | 30 | 296 | 108 | 430 | 8.28e-42 | 154 |
| MsG0380012452.01.T01 | AT3G42153 | 40.426 | 94 | 51 | 3 | 210 | 298 | 16 | 109 | 4.79e-14 | 68.9 |
Find 119 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAAAATAAATAAATTTA+AGG | 0.080998 | 3:-16740848 | MsG0380012452.01.T01:five_prime_UTR |
| CTTGAACTCCAGCATATTTA+AGG | 0.121059 | 3:+16739180 | None:intergenic |
| TCTAGCAAAGCTTGCTTCTT+TGG | 0.193643 | 3:-16738095 | MsG0380012452.01.T01:CDS |
| TCTTCGTTTGGTGACAAATT+TGG | 0.202470 | 3:+16738292 | None:intergenic |
| AAACAGATGGATTACATATT+AGG | 0.203643 | 3:-16738397 | MsG0380012452.01.T01:intron |
| TTGTATACTTACTTGCATTT+TGG | 0.219169 | 3:+16738798 | None:intergenic |
| CTACATATAATCTATTTCTT+TGG | 0.234068 | 3:+16739875 | None:intergenic |
| GGAAACTCCCTCCCAGTAAT+AGG | 0.246800 | 3:-16740389 | MsG0380012452.01.T01:CDS |
| ATTGAATAGGTTGACCTATC+AGG | 0.261586 | 3:-16740072 | MsG0380012452.01.T01:intron |
| TCTCCTCAATAAAGCAAAAT+TGG | 0.261612 | 3:-16739671 | MsG0380012452.01.T01:intron |
| AGGAGACGGCGAGCATATTT+AGG | 0.264621 | 3:+16739688 | None:intergenic |
| CCAAATCCACATGAGCTAAC+TGG | 0.270045 | 3:-16738223 | MsG0380012452.01.T01:CDS |
| TGGATAATAAAAGAGTATAT+TGG | 0.277192 | 3:-16740530 | MsG0380012452.01.T01:CDS |
| TTTATAATGACTAATTTCTA+TGG | 0.282554 | 3:+16737976 | None:intergenic |
| CTAGCAAAGCTTGCTTCTTT+GGG | 0.289529 | 3:-16738094 | MsG0380012452.01.T01:CDS |
| AGATCATACATGGTAGGATT+TGG | 0.292392 | 3:-16738358 | MsG0380012452.01.T01:CDS |
| GCTGGAGACAATGTGAAATA+TGG | 0.300456 | 3:-16740036 | MsG0380012452.01.T01:CDS |
| CCAGTTAGCTCATGTGGATT+TGG | 0.301161 | 3:+16738223 | None:intergenic |
| AATAGATTATATGTAGAGAT+AGG | 0.306730 | 3:-16739868 | MsG0380012452.01.T01:CDS |
| TCTCCAAGGGACCCTATTAC+TGG | 0.319353 | 3:+16740377 | None:intergenic |
| TACATATAATCTATTTCTTT+GGG | 0.324966 | 3:+16739876 | None:intergenic |
| TTCTTAGAGGCGCAAAGATC+AGG | 0.334942 | 3:-16740411 | MsG0380012452.01.T01:CDS |
| ATTTGCTTGTAAGGACTATC+AGG | 0.344561 | 3:+16739071 | None:intergenic |
| AAAATCTCTCATCTTCTTAG+AGG | 0.350453 | 3:-16740424 | MsG0380012452.01.T01:CDS |
| AACAGATGGATTACATATTA+GGG | 0.358207 | 3:-16738396 | MsG0380012452.01.T01:intron |
| GTCAAATTGATTTGCTTGTA+AGG | 0.358875 | 3:+16739062 | None:intergenic |
| ACCATGTATGATCTTCCTTC+AGG | 0.359145 | 3:+16738367 | None:intergenic |
| ATTTGAAGCAACAAATGAAA+TGG | 0.361468 | 3:-16739953 | MsG0380012452.01.T01:CDS |
| GGATAATAAAAGAGTATATT+GGG | 0.376123 | 3:-16740529 | MsG0380012452.01.T01:CDS |
| AGGAAACATGATACTTGTTA+AGG | 0.381146 | 3:-16740475 | MsG0380012452.01.T01:CDS |
| ATATTCAAAATGCCATTAGA+TGG | 0.385203 | 3:-16739927 | MsG0380012452.01.T01:CDS |
| CAACAATGATGATCATCAAC+TGG | 0.390024 | 3:+16739841 | None:intergenic |
| TTGGCACTGAAGCACCTCTA+TGG | 0.398776 | 3:+16738311 | None:intergenic |
| ATGTTTGTGAAATGTGTATT+GGG | 0.403208 | 3:+16740600 | None:intergenic |
| GATCATACATGGTAGGATTT+GGG | 0.403815 | 3:-16738357 | MsG0380012452.01.T01:CDS |
| TATGTGCAAGGTTCGGTCTT+AGG | 0.410154 | 3:+16738142 | None:intergenic |
| CAAATCCACATGAGCTAACT+GGG | 0.410353 | 3:-16738222 | MsG0380012452.01.T01:CDS |
| CTATGGTGAGCTTGTGTTGG+TGG | 0.424826 | 3:+16738328 | None:intergenic |
| TCACAGTTACTACATTATCA+TGG | 0.429191 | 3:-16739999 | MsG0380012452.01.T01:CDS |
| ATAATCTGTACCCCATCTAA+TGG | 0.430183 | 3:+16739915 | None:intergenic |
| GGACAGTTTATCTCTTCGTT+TGG | 0.432535 | 3:+16738280 | None:intergenic |
| AGCTGAAACTTCTGCTGCTA+TGG | 0.438179 | 3:-16739743 | MsG0380012452.01.T01:CDS |
| TAGCCATTTCTTAAAGCTTG+TGG | 0.441135 | 3:+16738258 | None:intergenic |
| GATGTTTGTGAAATGTGTAT+TGG | 0.444089 | 3:+16740599 | None:intergenic |
| GAAACTCCCTCCCAGTAATA+GGG | 0.444274 | 3:-16740388 | MsG0380012452.01.T01:CDS |
| TAACAAGTATCATGTTTCCT+TGG | 0.445707 | 3:+16740478 | None:intergenic |
| GTCCCACAAGCTTTAAGAAA+TGG | 0.446283 | 3:-16738261 | MsG0380012452.01.T01:CDS |
| ATAGATTATATGTAGAGATA+GGG | 0.448745 | 3:-16739867 | MsG0380012452.01.T01:CDS |
| TTGAACTTGTCGTTGATGTC+AGG | 0.451159 | 3:+16738184 | None:intergenic |
| AGTTGGGACCTTAAATATGC+TGG | 0.461271 | 3:-16739188 | MsG0380012452.01.T01:CDS |
| TTTGAAGCAACAAATGAAAT+GGG | 0.463240 | 3:-16739952 | MsG0380012452.01.T01:CDS |
| GGAAACATGATACTTGTTAA+GGG | 0.470689 | 3:-16740474 | MsG0380012452.01.T01:CDS |
| CTCCCAGTAATAGGGTCCCT+TGG | 0.470987 | 3:-16740380 | MsG0380012452.01.T01:CDS |
| GGAGACTCAGCAATGGATGA+TGG | 0.473201 | 3:-16740354 | MsG0380012452.01.T01:CDS |
| ACATGGCTTGCTTTGTTCCA+AGG | 0.473298 | 3:-16740495 | MsG0380012452.01.T01:CDS |
| AAATGAAATGAAACAAACTA+AGG | 0.473477 | 3:+16740804 | None:intergenic |
| AGCCATTTCTTAAAGCTTGT+GGG | 0.474167 | 3:+16738259 | None:intergenic |
| ACTTGCCAAATATAATCAAA+AGG | 0.476084 | 3:-16738869 | MsG0380012452.01.T01:CDS |
| TTGAATAGGTTGACCTATCA+GGG | 0.476637 | 3:-16740071 | MsG0380012452.01.T01:intron |
| GAGCTAACTGGGGCCATTGT+TGG | 0.483453 | 3:-16738211 | MsG0380012452.01.T01:CDS |
| AGTTGATGATCATCATTGTT+GGG | 0.484523 | 3:-16739839 | MsG0380012452.01.T01:CDS |
| TATTCAAAATGCCATTAGAT+GGG | 0.489997 | 3:-16739926 | MsG0380012452.01.T01:CDS |
| TTCTGCTTGTTTGTGATGGC+GGG | 0.494151 | 3:+16740748 | None:intergenic |
| AAGCAAATCAATTTGACTCC+TGG | 0.494274 | 3:-16739056 | MsG0380012452.01.T01:intron |
| TATGTTTCACGCAAATAATA+CGG | 0.496759 | 3:-16737943 | None:intergenic |
| CAGTTGATGATCATCATTGT+TGG | 0.497946 | 3:-16739840 | MsG0380012452.01.T01:CDS |
| TATGTTAATTCCCTTGCATC+CGG | 0.501225 | 3:-16738121 | MsG0380012452.01.T01:CDS |
| TAAGGGTCAATTTAATTACA+AGG | 0.517252 | 3:-16740457 | MsG0380012452.01.T01:CDS |
| TTGCTGAGTCTCCTCTCCAA+GGG | 0.521853 | 3:+16740364 | None:intergenic |
| CACAGTTACTACATTATCAT+GGG | 0.527654 | 3:-16739998 | MsG0380012452.01.T01:CDS |
| ATTAACATATGTGCAAGGTT+CGG | 0.528389 | 3:+16738135 | None:intergenic |
| CCTCTATGGTGAGCTTGTGT+TGG | 0.530222 | 3:+16738325 | None:intergenic |
| ATGTATAGGATGAGCTAATG+TGG | 0.532805 | 3:-16739301 | MsG0380012452.01.T01:intron |
| TTGCTAGAACACCGGATGCA+AGG | 0.535554 | 3:+16738110 | None:intergenic |
| CTAGTGTTGCAGAATTCAGT+TGG | 0.541518 | 3:-16739205 | MsG0380012452.01.T01:CDS |
| TGCTAGAACACCGGATGCAA+GGG | 0.542390 | 3:+16738111 | None:intergenic |
| CTCCAAGGGACCCTATTACT+GGG | 0.544631 | 3:+16740378 | None:intergenic |
| CTAACTGGGGCCATTGTTGG+TGG | 0.545679 | 3:-16738208 | MsG0380012452.01.T01:CDS |
| TTTGGCAAAATCAAGGAGAT+GGG | 0.548916 | 3:+16738816 | None:intergenic |
| CTGGAGACAATGTGAAATAT+GGG | 0.550838 | 3:-16740035 | MsG0380012452.01.T01:CDS |
| ATTGCTGAGTCTCCTCTCCA+AGG | 0.554564 | 3:+16740363 | None:intergenic |
| ATGGCCCCAGTTAGCTCATG+TGG | 0.556380 | 3:+16738217 | None:intergenic |
| TCTTAGAGGCGCAAAGATCA+GGG | 0.558185 | 3:-16740410 | MsG0380012452.01.T01:CDS |
| AAGTTCGTAGAAATATTATG+AGG | 0.558687 | 3:+16740573 | None:intergenic |
| CTTGAAGCATTTAAAGCACA+TGG | 0.561349 | 3:-16739119 | MsG0380012452.01.T01:CDS |
| TTTCTGCTTGTTTGTGATGG+CGG | 0.563290 | 3:+16740747 | None:intergenic |
| TAGTGTTGCAGAATTCAGTT+GGG | 0.566041 | 3:-16739204 | MsG0380012452.01.T01:CDS |
| AGCAAGCTTTGCTAGAACAC+CGG | 0.567307 | 3:+16738102 | None:intergenic |
| GGGTTTATTCATATGAGAGA+TGG | 0.573447 | 3:-16738949 | MsG0380012452.01.T01:CDS |
| TATAATCAAAAGGTCAAATG+TGG | 0.574640 | 3:-16738859 | MsG0380012452.01.T01:CDS |
| CATGGCTATACATGGCAACA+AGG | 0.579656 | 3:-16739271 | MsG0380012452.01.T01:CDS |
| TCCTGAAGGAAGATCATACA+TGG | 0.586107 | 3:-16738368 | MsG0380012452.01.T01:CDS |
| GGCTGCAACATGGCTATACA+TGG | 0.586171 | 3:-16739279 | MsG0380012452.01.T01:CDS |
| AATGAAATGAAACAAACTAA+GGG | 0.586378 | 3:+16740805 | None:intergenic |
| TCAGCTGCAATCTCAGTACC+AGG | 0.587163 | 3:+16739760 | None:intergenic |
| CCAACACAAGCTCACCATAG+AGG | 0.591866 | 3:-16738325 | MsG0380012452.01.T01:CDS |
| TAGATTATATGTAGAGATAG+GGG | 0.592704 | 3:-16739866 | MsG0380012452.01.T01:CDS |
| GATGTCAGGTCCACCAACAA+TGG | 0.594292 | 3:+16738198 | None:intergenic |
| AAATGAAACAAACTAAGGGA+TGG | 0.604842 | 3:+16740809 | None:intergenic |
| AAGGGACCCTATTACTGGGA+GGG | 0.613845 | 3:+16740382 | None:intergenic |
| AGCTAATGTGGGCTGCAACA+TGG | 0.614595 | 3:-16739289 | MsG0380012452.01.T01:CDS |
| GAAGGAAGATCATACATGGT+AGG | 0.615068 | 3:-16738364 | MsG0380012452.01.T01:CDS |
| GTAGTAACTGTGAATGCCAT+TGG | 0.617815 | 3:+16740009 | None:intergenic |
| GATGAACAAGAAAGATGTGC+TGG | 0.629243 | 3:+16738906 | None:intergenic |
| AGTAATAGGGTCCCTTGGAG+AGG | 0.629528 | 3:-16740375 | MsG0380012452.01.T01:CDS |
| TGTGAAATATGGGCTACCAA+TGG | 0.631971 | 3:-16740025 | MsG0380012452.01.T01:CDS |
| GCTTGTAAGGACTATCAGGA+AGG | 0.637627 | 3:+16739075 | None:intergenic |
| TGTATAGGATGAGCTAATGT+GGG | 0.640123 | 3:-16739300 | MsG0380012452.01.T01:intron |
| TTGGAGAGGAGACTCAGCAA+TGG | 0.645168 | 3:-16740361 | MsG0380012452.01.T01:CDS |
| ATTCAAAATGCCATTAGATG+GGG | 0.646428 | 3:-16739925 | MsG0380012452.01.T01:CDS |
| AGGGAATTAACATATGTGCA+AGG | 0.651111 | 3:+16738130 | None:intergenic |
| AACAATGATGATCATCAACT+GGG | 0.657794 | 3:+16739842 | None:intergenic |
| ATTGGGTCATCATTGCAACA+TGG | 0.666261 | 3:-16740512 | MsG0380012452.01.T01:CDS |
| TGAATAGGTTGACCTATCAG+GGG | 0.682641 | 3:-16740070 | MsG0380012452.01.T01:intron |
| CAAGGGACCCTATTACTGGG+AGG | 0.683836 | 3:+16740381 | None:intergenic |
| GAATAGGTTGACCTATCAGG+GGG | 0.686550 | 3:-16740069 | MsG0380012452.01.T01:intron |
| TTAATTGATAGTAACACACC+TGG | 0.700118 | 3:-16739778 | MsG0380012452.01.T01:CDS |
| GAACAAGAAAGATGTGCTGG+TGG | 0.719087 | 3:+16738909 | None:intergenic |
| AAATCCACATGAGCTAACTG+GGG | 0.756843 | 3:-16738221 | MsG0380012452.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTGAAAATAAATAAATTTA+AGG | - | Chr3:16737997-16738016 | MsG0380012452.01.T01:three_prime_UTR | 10.0% |
| !!! | AAATAATGTATTTTTTTAAG+GGG | + | Chr3:16740083-16740102 | None:intergenic | 10.0% |
| !! | ATATTTAAATATGATTATGC+AGG | - | Chr3:16739872-16739891 | MsG0380012452.01.T01:CDS | 15.0% |
| !! | TTTATAATGACTAATTTCTA+TGG | + | Chr3:16740872-16740891 | None:intergenic | 15.0% |
| !!! | TACATATAATCTATTTCTTT+GGG | + | Chr3:16738972-16738991 | None:intergenic | 15.0% |
| !!! | TTGATTTTATTGAATTGAAT+AGG | - | Chr3:16738760-16738779 | MsG0380012452.01.T01:intron | 15.0% |
| !!! | TTTTTTATTGGGATAATTAA+TGG | - | Chr3:16738295-16738314 | MsG0380012452.01.T01:CDS | 15.0% |
| !! | AAATGAAATGAAACAAACTA+AGG | + | Chr3:16738044-16738063 | None:intergenic | 20.0% |
| !! | AATAGATTATATGTAGAGAT+AGG | - | Chr3:16738977-16738996 | MsG0380012452.01.T01:intron | 20.0% |
| !! | AATGAAATGAAACAAACTAA+GGG | + | Chr3:16738043-16738062 | None:intergenic | 20.0% |
| !! | ACGTACAAAATGAATAATTT+GGG | - | Chr3:16738728-16738747 | MsG0380012452.01.T01:intron | 20.0% |
| !! | ACTAAGAGTGAATTAATATT+GGG | - | Chr3:16739492-16739511 | MsG0380012452.01.T01:intron | 20.0% |
| !! | ATAGATTATATGTAGAGATA+GGG | - | Chr3:16738978-16738997 | MsG0380012452.01.T01:intron | 20.0% |
| !! | CTCAAAACAAAATCATTATT+AGG | - | Chr3:16738541-16738560 | MsG0380012452.01.T01:intron | 20.0% |
| !! | TAAATAAGTGGTTATGTTTA+TGG | + | Chr3:16738204-16738223 | None:intergenic | 20.0% |
| !! | TACGTACAAAATGAATAATT+TGG | - | Chr3:16738727-16738746 | MsG0380012452.01.T01:intron | 20.0% |
| !!! | ACTTTTTTGATTTAGATGTT+TGG | + | Chr3:16738130-16738149 | None:intergenic | 20.0% |
| !!! | ATGAAATTGATCTTCAATTT+TGG | + | Chr3:16738622-16738641 | None:intergenic | 20.0% |
| !!! | CTACATATAATCTATTTCTT+TGG | + | Chr3:16738973-16738992 | None:intergenic | 20.0% |
| !!! | GATAATTCAACTTTTTCTAA+TGG | - | Chr3:16738669-16738688 | MsG0380012452.01.T01:intron | 20.0% |
| !!! | GGATAATAAAAGAGTATATT+GGG | - | Chr3:16738316-16738335 | MsG0380012452.01.T01:CDS | 20.0% |
| !!! | TCTACGAACTTTTTTTTATT+GGG | - | Chr3:16738284-16738303 | MsG0380012452.01.T01:CDS | 20.0% |
| !!! | TGAAAAATACGTACTTTTTT+TGG | - | Chr3:16739199-16739218 | MsG0380012452.01.T01:CDS | 20.0% |
| !!! | TGGATAATAAAAGAGTATAT+TGG | - | Chr3:16738315-16738334 | MsG0380012452.01.T01:CDS | 20.0% |
| !!! | TTCTACGAACTTTTTTTTAT+TGG | - | Chr3:16738283-16738302 | MsG0380012452.01.T01:CDS | 20.0% |
| !!! | TTTGACCTTTTGATTATATT+TGG | + | Chr3:16739984-16740003 | None:intergenic | 20.0% |
| ! | AAATGTACATGTAATTTACC+AGG | + | Chr3:16739810-16739829 | None:intergenic | 25.0% |
| ! | AAGTTCGTAGAAATATTATG+AGG | + | Chr3:16738275-16738294 | None:intergenic | 25.0% |
| ! | ACTTGCCAAATATAATCAAA+AGG | - | Chr3:16739976-16739995 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | ATATTCAAAATGCCATTAGA+TGG | - | Chr3:16738918-16738937 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | ATGTCATTGGTATATTGTTT+AGG | + | Chr3:16739238-16739257 | None:intergenic | 25.0% |
| ! | ATGTTTGTGAAATGTGTATT+GGG | + | Chr3:16738248-16738267 | None:intergenic | 25.0% |
| ! | ATTGAAGTAACCTATAGTAT+TGG | - | Chr3:16739309-16739328 | MsG0380012452.01.T01:intron | 25.0% |
| ! | CACTAAGAGTGAATTAATAT+TGG | - | Chr3:16739491-16739510 | MsG0380012452.01.T01:intron | 25.0% |
| ! | TAAGGGTCAATTTAATTACA+AGG | - | Chr3:16738388-16738407 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | TAGATTATATGTAGAGATAG+GGG | - | Chr3:16738979-16738998 | MsG0380012452.01.T01:intron | 25.0% |
| ! | TATAAAGACGTGTAAATAAG+TGG | + | Chr3:16738216-16738235 | None:intergenic | 25.0% |
| ! | TATAATCAAAAGGTCAAATG+TGG | - | Chr3:16739986-16740005 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | TATATATTATCAAGCAGACT+TGG | - | Chr3:16740119-16740138 | MsG0380012452.01.T01:intron | 25.0% |
| ! | TATTCAAAATGCCATTAGAT+GGG | - | Chr3:16738919-16738938 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | TGTTAAAAATGTAGTTGAGA+GGG | - | Chr3:16740816-16740835 | MsG0380012452.01.T01:five_prime_UTR | 25.0% |
| ! | TTAAATATGATTATGCAGGT+GGG | - | Chr3:16739876-16739895 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | TTAATGTGATGCATATGTAT+AGG | - | Chr3:16739530-16739549 | MsG0380012452.01.T01:intron | 25.0% |
| ! | TTGTTAAAAATGTAGTTGAG+AGG | - | Chr3:16740815-16740834 | MsG0380012452.01.T01:five_prime_UTR | 25.0% |
| ! | TTTAAATATGATTATGCAGG+TGG | - | Chr3:16739875-16739894 | MsG0380012452.01.T01:CDS | 25.0% |
| ! | TTTGTCTCTAAATATTAGTG+AGG | - | Chr3:16738596-16738615 | MsG0380012452.01.T01:intron | 25.0% |
| !! | AACTACATTTTTAACAACGT+TGG | + | Chr3:16740812-16740831 | None:intergenic | 25.0% |
| !! | AATCTACTACAACTTTTAGT+AGG | + | Chr3:16740847-16740866 | None:intergenic | 25.0% |
| !! | ACTACATTTTTAACAACGTT+GGG | + | Chr3:16740811-16740830 | None:intergenic | 25.0% |
| !! | ATTTGAAGCAACAAATGAAA+TGG | - | Chr3:16738892-16738911 | MsG0380012452.01.T01:CDS | 25.0% |
| !! | CATTTTTCTATACATGTCAT+TGG | + | Chr3:16739251-16739270 | None:intergenic | 25.0% |
| !! | TTGTATACTTACTTGCATTT+TGG | + | Chr3:16740050-16740069 | None:intergenic | 25.0% |
| !! | TTTGAAGCAACAAATGAAAT+GGG | - | Chr3:16738893-16738912 | MsG0380012452.01.T01:CDS | 25.0% |
| !!! | AAACAGATGGATTACATATT+AGG | - | Chr3:16740448-16740467 | MsG0380012452.01.T01:CDS | 25.0% |
| !!! | AAAGTAGTAGTAAGTTTTAG+AGG | + | Chr3:16738075-16738094 | None:intergenic | 25.0% |
| !!! | AACAGATGGATTACATATTA+GGG | - | Chr3:16740449-16740468 | MsG0380012452.01.T01:CDS | 25.0% |
| !!! | ATACCAATTTTGCTTTATTG+AGG | + | Chr3:16739180-16739199 | None:intergenic | 25.0% |
| !!! | TTACATTTTGAAGGTCAAAA+AGG | - | Chr3:16739702-16739721 | MsG0380012452.01.T01:CDS | 25.0% |
| AAAATCTCTCATCTTCTTAG+AGG | - | Chr3:16738421-16738440 | MsG0380012452.01.T01:intron | 30.0% | |
| AAATGAAACAAACTAAGGGA+TGG | + | Chr3:16738039-16738058 | None:intergenic | 30.0% | |
| AACAATGATGATCATCAACT+GGG | + | Chr3:16739006-16739025 | None:intergenic | 30.0% | |
| ACATACATTATAGCCTGAAT+AGG | + | Chr3:16739441-16739460 | None:intergenic | 30.0% | |
| AGCATATGTTATAGCAACTT+TGG | + | Chr3:16740374-16740393 | None:intergenic | 30.0% | |
| AGTTGCTATAACATATGCTT+TGG | - | Chr3:16740375-16740394 | MsG0380012452.01.T01:CDS | 30.0% | |
| ATATTAGGGAAAAATCCTGA+AGG | - | Chr3:16740463-16740482 | MsG0380012452.01.T01:CDS | 30.0% | |
| ATATTCCCAACCAATACTAT+AGG | + | Chr3:16739322-16739341 | None:intergenic | 30.0% | |
| ATATTTGGATGGTAAACAGA+TGG | - | Chr3:16740435-16740454 | MsG0380012452.01.T01:CDS | 30.0% | |
| ATCAACATGCCTAAAAACAA+TGG | + | Chr3:16739137-16739156 | None:intergenic | 30.0% | |
| ATTAACATATGTGCAAGGTT+CGG | + | Chr3:16740713-16740732 | None:intergenic | 30.0% | |
| ATTCAAAATGCCATTAGATG+GGG | - | Chr3:16738920-16738939 | MsG0380012452.01.T01:CDS | 30.0% | |
| CACAGTTACTACATTATCAT+GGG | - | Chr3:16738847-16738866 | MsG0380012452.01.T01:CDS | 30.0% | |
| CACTCTTAGTGAATTAAGAA+AGG | + | Chr3:16739482-16739501 | None:intergenic | 30.0% | |
| GATGTTTGTGAAATGTGTAT+TGG | + | Chr3:16738249-16738268 | None:intergenic | 30.0% | |
| TAACAAGTATCATGTTTCCT+TGG | + | Chr3:16738370-16738389 | None:intergenic | 30.0% | |
| TAGAGTGACTGTCTAATATT+TGG | - | Chr3:16740420-16740439 | MsG0380012452.01.T01:CDS | 30.0% | |
| TCACAGTTACTACATTATCA+TGG | - | Chr3:16738846-16738865 | MsG0380012452.01.T01:CDS | 30.0% | |
| TCTCCTCAATAAAGCAAAAT+TGG | - | Chr3:16739174-16739193 | MsG0380012452.01.T01:CDS | 30.0% | |
| ! | AGGAAACATGATACTTGTTA+AGG | - | Chr3:16738370-16738389 | MsG0380012452.01.T01:CDS | 30.0% |
| ! | ATTTATTTCTCCCAATTTCC+TGG | - | Chr3:16739351-16739370 | MsG0380012452.01.T01:intron | 30.0% |
| ! | CTACATTTTTAACAACGTTG+GGG | + | Chr3:16740810-16740829 | None:intergenic | 30.0% |
| ! | CTCTTTGTCTTCATATTTTC+TGG | + | Chr3:16739037-16739056 | None:intergenic | 30.0% |
| ! | GGAAACATGATACTTGTTAA+GGG | - | Chr3:16738371-16738390 | MsG0380012452.01.T01:CDS | 30.0% |
| ! | TATTTTCTGCTTGTTTGTGA+TGG | + | Chr3:16738104-16738123 | None:intergenic | 30.0% |
| ! | TTAATTGATAGTAACACACC+TGG | - | Chr3:16739067-16739086 | MsG0380012452.01.T01:CDS | 30.0% |
| ! | TTTGTCTTCATATTTTCTGG+TGG | + | Chr3:16739034-16739053 | None:intergenic | 30.0% |
| !! | AAGTAACCTATAGTATTGGT+TGG | - | Chr3:16739313-16739332 | MsG0380012452.01.T01:intron | 30.0% |
| !! | AGTAACCTATAGTATTGGTT+GGG | - | Chr3:16739314-16739333 | MsG0380012452.01.T01:intron | 30.0% |
| !! | AGTTGATGATCATCATTGTT+GGG | - | Chr3:16739006-16739025 | MsG0380012452.01.T01:intron | 30.0% |
| !! | ATTTTGCTTTATTGAGGAGA+CGG | + | Chr3:16739174-16739193 | None:intergenic | 30.0% |
| !! | GTCAAATTGATTTGCTTGTA+AGG | + | Chr3:16739786-16739805 | None:intergenic | 30.0% |
| !!! | TAGTAGTAAGTTTTAGAGGA+TGG | + | Chr3:16738071-16738090 | None:intergenic | 30.0% |
| AAGCAAATCAATTTGACTCC+TGG | - | Chr3:16739789-16739808 | MsG0380012452.01.T01:CDS | 35.0% | |
| AGATCATACATGGTAGGATT+TGG | - | Chr3:16740487-16740506 | MsG0380012452.01.T01:CDS | 35.0% | |
| AGCCATTTCTTAAAGCTTGT+GGG | + | Chr3:16740589-16740608 | None:intergenic | 35.0% | |
| AGGGAATTAACATATGTGCA+AGG | + | Chr3:16740718-16740737 | None:intergenic | 35.0% | |
| AGTATGATGTTGCAGCTTTA+GGG | - | Chr3:16740260-16740279 | MsG0380012452.01.T01:intron | 35.0% | |
| ATAATCTGTACCCCATCTAA+TGG | + | Chr3:16738933-16738952 | None:intergenic | 35.0% | |
| ATGTATAGGATGAGCTAATG+TGG | - | Chr3:16739544-16739563 | MsG0380012452.01.T01:intron | 35.0% | |
| ATTTGCTTGTAAGGACTATC+AGG | + | Chr3:16739777-16739796 | None:intergenic | 35.0% | |
| CAACAATGATGATCATCAAC+TGG | + | Chr3:16739007-16739026 | None:intergenic | 35.0% | |
| CTGGAGACAATGTGAAATAT+GGG | - | Chr3:16738810-16738829 | MsG0380012452.01.T01:CDS | 35.0% | |
| CTTGAACTCCAGCATATTTA+AGG | + | Chr3:16739668-16739687 | None:intergenic | 35.0% | |
| GAATTGGCGAAATCTCATAA+AGG | - | Chr3:16739383-16739402 | MsG0380012452.01.T01:intron | 35.0% | |
| GATCATACATGGTAGGATTT+GGG | - | Chr3:16740488-16740507 | MsG0380012452.01.T01:CDS | 35.0% | |
| GGGTTTATTCATATGAGAGA+TGG | - | Chr3:16739896-16739915 | MsG0380012452.01.T01:CDS | 35.0% | |
| GTGACTGTCTAATATTTGGA+TGG | - | Chr3:16740424-16740443 | MsG0380012452.01.T01:CDS | 35.0% | |
| TAGCCATTTCTTAAAGCTTG+TGG | + | Chr3:16740590-16740609 | None:intergenic | 35.0% | |
| TAGTATGATGTTGCAGCTTT+AGG | - | Chr3:16740259-16740278 | MsG0380012452.01.T01:intron | 35.0% | |
| TAGTGTTGCAGAATTCAGTT+GGG | - | Chr3:16739641-16739660 | MsG0380012452.01.T01:intron | 35.0% | |
| TATGTTAATTCCCTTGCATC+CGG | - | Chr3:16740724-16740743 | MsG0380012452.01.T01:five_prime_UTR | 35.0% | |
| TCTCATAAAGGAACCTATGA+TGG | - | Chr3:16739395-16739414 | MsG0380012452.01.T01:intron | 35.0% | |
| TGTATAGGATGAGCTAATGT+GGG | - | Chr3:16739545-16739564 | MsG0380012452.01.T01:intron | 35.0% | |
| TTTGGCAAAATCAAGGAGAT+GGG | + | Chr3:16740032-16740051 | None:intergenic | 35.0% | |
| ! | ATTGAATAGGTTGACCTATC+AGG | - | Chr3:16738773-16738792 | MsG0380012452.01.T01:intron | 35.0% |
| ! | CTCACTCAGTTACATTTTGA+AGG | - | Chr3:16739693-16739712 | MsG0380012452.01.T01:CDS | 35.0% |
| ! | CTTGAAGCATTTAAAGCACA+TGG | - | Chr3:16739726-16739745 | MsG0380012452.01.T01:CDS | 35.0% |
| ! | TCTTCGTTTGGTGACAAATT+TGG | + | Chr3:16740556-16740575 | None:intergenic | 35.0% |
| ! | TTGAATAGGTTGACCTATCA+GGG | - | Chr3:16738774-16738793 | MsG0380012452.01.T01:intron | 35.0% |
| ! | TTTTGGCAAAATCAAGGAGA+TGG | + | Chr3:16740033-16740052 | None:intergenic | 35.0% |
| !! | CAGTTGATGATCATCATTGT+TGG | - | Chr3:16739005-16739024 | MsG0380012452.01.T01:intron | 35.0% |
| !! | CTGCTTCTTCCATTGTTTTT+AGG | - | Chr3:16739125-16739144 | MsG0380012452.01.T01:CDS | 35.0% |
| !! | CTTGCATTTTGGCAAAATCA+AGG | + | Chr3:16740039-16740058 | None:intergenic | 35.0% |
| AAATCCACATGAGCTAACTG+GGG | - | Chr3:16740624-16740643 | MsG0380012452.01.T01:intron | 40.0% | |
| ACCATGTATGATCTTCCTTC+AGG | + | Chr3:16740481-16740500 | None:intergenic | 40.0% | |
| AGTTGGGACCTTAAATATGC+TGG | - | Chr3:16739657-16739676 | MsG0380012452.01.T01:intron | 40.0% | |
| ATTGGGTCATCATTGCAACA+TGG | - | Chr3:16738333-16738352 | MsG0380012452.01.T01:CDS | 40.0% | |
| CAAATCCACATGAGCTAACT+GGG | - | Chr3:16740623-16740642 | MsG0380012452.01.T01:intron | 40.0% | |
| CATCATAATATCCCCCTGAT+AGG | + | Chr3:16738790-16738809 | None:intergenic | 40.0% | |
| CTAGTGTTGCAGAATTCAGT+TGG | - | Chr3:16739640-16739659 | MsG0380012452.01.T01:intron | 40.0% | |
| GAAGGAAGATCATACATGGT+AGG | - | Chr3:16740481-16740500 | MsG0380012452.01.T01:CDS | 40.0% | |
| GATGAACAAGAAAGATGTGC+TGG | + | Chr3:16739942-16739961 | None:intergenic | 40.0% | |
| GCTGCAACATCATACTACAT+CGG | + | Chr3:16740256-16740275 | None:intergenic | 40.0% | |
| GCTGGAGACAATGTGAAATA+TGG | - | Chr3:16738809-16738828 | MsG0380012452.01.T01:intron | 40.0% | |
| GGACAGTTTATCTCTTCGTT+TGG | + | Chr3:16740568-16740587 | None:intergenic | 40.0% | |
| GTAGTAACTGTGAATGCCAT+TGG | + | Chr3:16738839-16738858 | None:intergenic | 40.0% | |
| TCCTGAAGGAAGATCATACA+TGG | - | Chr3:16740477-16740496 | MsG0380012452.01.T01:CDS | 40.0% | |
| TTGAACTTGTCGTTGATGTC+AGG | + | Chr3:16740664-16740683 | None:intergenic | 40.0% | |
| TTTCTGCTTGTTTGTGATGG+CGG | + | Chr3:16738101-16738120 | None:intergenic | 40.0% | |
| ! | CTAGCAAAGCTTGCTTCTTT+GGG | - | Chr3:16740751-16740770 | MsG0380012452.01.T01:five_prime_UTR | 40.0% |
| ! | TCTAGCAAAGCTTGCTTCTT+TGG | - | Chr3:16740750-16740769 | MsG0380012452.01.T01:five_prime_UTR | 40.0% |
| ! | TGAATAGGTTGACCTATCAG+GGG | - | Chr3:16738775-16738794 | MsG0380012452.01.T01:intron | 40.0% |
| ! | TGTGAAATATGGGCTACCAA+TGG | - | Chr3:16738820-16738839 | MsG0380012452.01.T01:CDS | 40.0% |
| !! | ATTGTGGTATGGTGTTGTCA+CGG | + | Chr3:16740341-16740360 | None:intergenic | 40.0% |
| !! | GTCCCACAAGCTTTAAGAAA+TGG | - | Chr3:16740584-16740603 | MsG0380012452.01.T01:five_prime_UTR | 40.0% |
| ACACCATACCACAATCGTAG+AGG | - | Chr3:16740346-16740365 | MsG0380012452.01.T01:CDS | 45.0% | |
| AGCAAGCTTTGCTAGAACAC+CGG | + | Chr3:16740746-16740765 | None:intergenic | 45.0% | |
| AGCTGAAACTTCTGCTGCTA+TGG | - | Chr3:16739102-16739121 | MsG0380012452.01.T01:CDS | 45.0% | |
| CATGGCTATACATGGCAACA+AGG | - | Chr3:16739574-16739593 | MsG0380012452.01.T01:intron | 45.0% | |
| CCAAATCCACATGAGCTAAC+TGG | - | Chr3:16740622-16740641 | MsG0380012452.01.T01:intron | 45.0% | |
| CCAGTTAGCTCATGTGGATT+TGG | + | Chr3:16740625-16740644 | None:intergenic | 45.0% | |
| CCTGAATAGGAGCAGTAGAA+GGG | + | Chr3:16739428-16739447 | None:intergenic | 45.0% | |
| CGAAAAGCTGCCAGGAAATT+GGG | + | Chr3:16739364-16739383 | None:intergenic | 45.0% | |
| CTTTGGATCCTCTACGATTG+TGG | + | Chr3:16740357-16740376 | None:intergenic | 45.0% | |
| GAAACTCCCTCCCAGTAATA+GGG | - | Chr3:16738457-16738476 | MsG0380012452.01.T01:intron | 45.0% | |
| GAACAAGAAAGATGTGCTGG+TGG | + | Chr3:16739939-16739958 | None:intergenic | 45.0% | |
| GAAGGGACATTCTCCATCAT+AGG | + | Chr3:16739411-16739430 | None:intergenic | 45.0% | |
| GATCCTCTACGATTGTGGTA+TGG | + | Chr3:16740352-16740371 | None:intergenic | 45.0% | |
| GCTTGTAAGGACTATCAGGA+AGG | + | Chr3:16739773-16739792 | None:intergenic | 45.0% | |
| TCAGGGGGATATTATGATGC+TGG | - | Chr3:16738791-16738810 | MsG0380012452.01.T01:intron | 45.0% | |
| TCGAAAAGCTGCCAGGAAAT+TGG | + | Chr3:16739365-16739384 | None:intergenic | 45.0% | |
| TTCTGCTTGTTTGTGATGGC+GGG | + | Chr3:16738100-16738119 | None:intergenic | 45.0% | |
| ! | GAATAGGTTGACCTATCAGG+GGG | - | Chr3:16738776-16738795 | MsG0380012452.01.T01:intron | 45.0% |
| ! | TATGTGCAAGGTTCGGTCTT+AGG | + | Chr3:16740706-16740725 | None:intergenic | 45.0% |
| ! | TCTTAGAGGCGCAAAGATCA+GGG | - | Chr3:16738435-16738454 | MsG0380012452.01.T01:intron | 45.0% |
| ! | TTCCTGGCAGCTTTTCGAAT+TGG | - | Chr3:16739367-16739386 | MsG0380012452.01.T01:intron | 45.0% |
| ! | TTCTTAGAGGCGCAAAGATC+AGG | - | Chr3:16738434-16738453 | MsG0380012452.01.T01:intron | 45.0% |
| !! | ACATGGCTTGCTTTGTTCCA+AGG | - | Chr3:16738350-16738369 | MsG0380012452.01.T01:CDS | 45.0% |
| !! | TGATGTTGCAGCTTTAGGGA+CGG | - | Chr3:16740264-16740283 | MsG0380012452.01.T01:intron | 45.0% |
| !!! | ATAAATAATGTATTTTTTTA+AGG | + | Chr3:16740085-16740104 | None:intergenic | 5.0% |
| !!! | TAAATAATGTATTTTTTTAA+GGG | + | Chr3:16740084-16740103 | None:intergenic | 5.0% |
| AAGGGACCCTATTACTGGGA+GGG | + | Chr3:16738466-16738485 | None:intergenic | 50.0% | |
| AGGAGACGGCGAGCATATTT+AGG | + | Chr3:16739160-16739179 | None:intergenic | 50.0% | |
| AGTAATAGGGTCCCTTGGAG+AGG | - | Chr3:16738470-16738489 | MsG0380012452.01.T01:intron | 50.0% | |
| ATTGCTGAGTCTCCTCTCCA+AGG | + | Chr3:16738485-16738504 | None:intergenic | 50.0% | |
| CCAACACAAGCTCACCATAG+AGG | - | Chr3:16740520-16740539 | MsG0380012452.01.T01:CDS | 50.0% | |
| CCCTTCTACTGCTCCTATTC+AGG | - | Chr3:16739425-16739444 | MsG0380012452.01.T01:intron | 50.0% | |
| CCTCTATGGTGAGCTTGTGT+TGG | + | Chr3:16740523-16740542 | None:intergenic | 50.0% | |
| CTATGGTGAGCTTGTGTTGG+TGG | + | Chr3:16740520-16740539 | None:intergenic | 50.0% | |
| CTCCAAGGGACCCTATTACT+GGG | + | Chr3:16738470-16738489 | None:intergenic | 50.0% | |
| GATGTCAGGTCCACCAACAA+TGG | + | Chr3:16740650-16740669 | None:intergenic | 50.0% | |
| GCCTGAATAGGAGCAGTAGA+AGG | + | Chr3:16739429-16739448 | None:intergenic | 50.0% | |
| GGAAACTCCCTCCCAGTAAT+AGG | - | Chr3:16738456-16738475 | MsG0380012452.01.T01:intron | 50.0% | |
| GGAGACTCAGCAATGGATGA+TGG | - | Chr3:16738491-16738510 | MsG0380012452.01.T01:intron | 50.0% | |
| GGCTGCAACATGGCTATACA+TGG | - | Chr3:16739566-16739585 | MsG0380012452.01.T01:intron | 50.0% | |
| TCAGCTGCAATCTCAGTACC+AGG | + | Chr3:16739088-16739107 | None:intergenic | 50.0% | |
| TCTCCAAGGGACCCTATTAC+TGG | + | Chr3:16738471-16738490 | None:intergenic | 50.0% | |
| TGCTAGAACACCGGATGCAA+GGG | + | Chr3:16740737-16740756 | None:intergenic | 50.0% | |
| TTGCTAGAACACCGGATGCA+AGG | + | Chr3:16740738-16740757 | None:intergenic | 50.0% | |
| TTGCTGAGTCTCCTCTCCAA+GGG | + | Chr3:16738484-16738503 | None:intergenic | 50.0% | |
| TTGGAGAGGAGACTCAGCAA+TGG | - | Chr3:16738484-16738503 | MsG0380012452.01.T01:intron | 50.0% | |
| ! | AGCTAATGTGGGCTGCAACA+TGG | - | Chr3:16739556-16739575 | MsG0380012452.01.T01:intron | 50.0% |
| ! | TTGGCACTGAAGCACCTCTA+TGG | + | Chr3:16740537-16740556 | None:intergenic | 50.0% |
| ATGGCCCCAGTTAGCTCATG+TGG | + | Chr3:16740631-16740650 | None:intergenic | 55.0% | |
| CAAGGGACCCTATTACTGGG+AGG | + | Chr3:16738467-16738486 | None:intergenic | 55.0% | |
| CGCCAATTCGAAAAGCTGCC+AGG | + | Chr3:16739372-16739391 | None:intergenic | 55.0% | |
| CTAACTGGGGCCATTGTTGG+TGG | - | Chr3:16740637-16740656 | MsG0380012452.01.T01:intron | 55.0% | |
| CTCCCAGTAATAGGGTCCCT+TGG | - | Chr3:16738465-16738484 | MsG0380012452.01.T01:intron | 55.0% | |
| GAGCTAACTGGGGCCATTGT+TGG | - | Chr3:16740634-16740653 | MsG0380012452.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 16737945 | 16740922 | 16737945 | ID=MsG0380012452.01;Name=MsG0380012452.01 |
| Chr3 | mRNA | 16737945 | 16740922 | 16737945 | ID=MsG0380012452.01.T01;Parent=MsG0380012452.01;Name=MsG0380012452.01.T01;_AED=0.49;_eAED=0.49;_QI=300|0.8|1|1|0.8|0.66|6|145|457 |
| Chr3 | exon | 16737945 | 16738413 | 16737945 | ID=MsG0380012452.01.T01:exon:21934;Parent=MsG0380012452.01.T01 |
| Chr3 | exon | 16738810 | 16738973 | 16738810 | ID=MsG0380012452.01.T01:exon:21933;Parent=MsG0380012452.01.T01 |
| Chr3 | exon | 16739057 | 16739315 | 16739057 | ID=MsG0380012452.01.T01:exon:21932;Parent=MsG0380012452.01.T01 |
| Chr3 | exon | 16739672 | 16740085 | 16739672 | ID=MsG0380012452.01.T01:exon:21931;Parent=MsG0380012452.01.T01 |
| Chr3 | exon | 16740341 | 16740640 | 16740341 | ID=MsG0380012452.01.T01:exon:21930;Parent=MsG0380012452.01.T01 |
| Chr3 | exon | 16740710 | 16740922 | 16740710 | ID=MsG0380012452.01.T01:exon:21929;Parent=MsG0380012452.01.T01 |
| Chr3 | five_prime_UTR | 16740710 | 16740922 | 16740710 | ID=MsG0380012452.01.T01:five_prime_utr;Parent=MsG0380012452.01.T01 |
| Chr3 | five_prime_UTR | 16740554 | 16740640 | 16740554 | ID=MsG0380012452.01.T01:five_prime_utr;Parent=MsG0380012452.01.T01 |
| Chr3 | CDS | 16740341 | 16740553 | 16740341 | ID=MsG0380012452.01.T01:cds;Parent=MsG0380012452.01.T01 |
| Chr3 | CDS | 16739672 | 16740085 | 16739672 | ID=MsG0380012452.01.T01:cds;Parent=MsG0380012452.01.T01 |
| Chr3 | CDS | 16739057 | 16739315 | 16739057 | ID=MsG0380012452.01.T01:cds;Parent=MsG0380012452.01.T01 |
| Chr3 | CDS | 16738810 | 16738973 | 16738810 | ID=MsG0380012452.01.T01:cds;Parent=MsG0380012452.01.T01 |
| Chr3 | CDS | 16738090 | 16738413 | 16738090 | ID=MsG0380012452.01.T01:cds;Parent=MsG0380012452.01.T01 |
| Chr3 | three_prime_UTR | 16737945 | 16738089 | 16737945 | ID=MsG0380012452.01.T01:three_prime_utr;Parent=MsG0380012452.01.T01 |
| Gene Sequence |
| Protein sequence |
