Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012699.01.T01 | XP_003599200.1 | 82.105 | 380 | 59 | 8 | 80 | 455 | 1 | 375 | 0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012699.01.T01 | Q3EBZ2 | 32.203 | 413 | 220 | 12 | 84 | 455 | 1 | 394 | 1.21E-46 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012699.01.T01 | G7IWN8 | 82.105 | 380 | 59 | 8 | 80 | 455 | 1 | 375 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004463.01 | MsG0380012699.01 | 0.818457 | 1.940847e-52 | 1.453689e-49 |
| MsG0180004711.01 | MsG0380012699.01 | 0.837655 | 4.571519e-57 | 5.978992e-54 |
| MsG0280006375.01 | MsG0380012699.01 | 0.804664 | 1.938059e-49 | 1.005114e-46 |
| MsG0280011014.01 | MsG0380012699.01 | 0.804642 | 1.958103e-49 | 1.014935e-46 |
| MsG0380012699.01 | MsG0380013363.01 | 0.809941 | 1.474947e-50 | 8.775931e-48 |
| MsG0380012699.01 | MsG0480023463.01 | 0.828244 | 1.001548e-54 | 9.898610e-52 |
| MsG0380012699.01 | MsG0680031488.01 | 0.801513 | 8.691958e-49 | 4.158783e-46 |
| MsG0380012699.01 | MsG0780036477.01 | 0.805990 | 1.022309e-49 | 5.485971e-47 |
| MsG0380012699.01 | MsG0780038401.01 | 0.810953 | 8.919354e-51 | 5.451486e-48 |
| MsG0380012699.01 | MsG0880043491.01 | 0.813633 | 2.318698e-51 | 1.522253e-48 |
| MsG0380012699.01 | MsG0880044565.01 | 0.807153 | 5.808165e-50 | 3.211182e-47 |
| MsG0380012699.01 | MsG0880046012.01 | 0.809305 | 2.020619e-50 | 1.182167e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012699.01.T01 | MTR_3g030080 | 82.105 | 380 | 59 | 8 | 80 | 455 | 1 | 375 | 0.0 | 609 |
| MsG0380012699.01.T01 | MTR_2g047180 | 60.526 | 380 | 122 | 11 | 86 | 453 | 4 | 367 | 1.07e-145 | 421 |
| MsG0380012699.01.T01 | MTR_1g016570 | 55.639 | 399 | 128 | 12 | 62 | 451 | 1 | 359 | 4.96e-136 | 396 |
| MsG0380012699.01.T01 | MTR_3g029650 | 55.906 | 381 | 138 | 8 | 85 | 455 | 4 | 364 | 2.04e-130 | 394 |
| MsG0380012699.01.T01 | MTR_3g029650 | 47.573 | 412 | 160 | 16 | 75 | 453 | 363 | 751 | 2.99e-101 | 319 |
| MsG0380012699.01.T01 | MTR_6g018360 | 53.470 | 389 | 151 | 10 | 86 | 454 | 5 | 383 | 1.28e-125 | 371 |
| MsG0380012699.01.T01 | MTR_3g030380 | 55.764 | 373 | 141 | 12 | 86 | 453 | 5 | 358 | 4.62e-120 | 355 |
| MsG0380012699.01.T01 | MTR_6g018315 | 52.493 | 381 | 145 | 12 | 97 | 454 | 1 | 368 | 6.22e-118 | 351 |
| MsG0380012699.01.T01 | MTR_6g018390 | 53.351 | 373 | 155 | 11 | 86 | 451 | 5 | 365 | 8.91e-118 | 349 |
| MsG0380012699.01.T01 | MTR_3g030480 | 53.908 | 371 | 150 | 12 | 85 | 453 | 4 | 355 | 1.15e-115 | 343 |
| MsG0380012699.01.T01 | MTR_3g029920 | 52.480 | 383 | 158 | 15 | 85 | 453 | 8 | 380 | 3.51e-115 | 343 |
| MsG0380012699.01.T01 | MTR_3g030440 | 53.639 | 371 | 151 | 12 | 85 | 453 | 5 | 356 | 1.12e-114 | 341 |
| MsG0380012699.01.T01 | MTR_1g026850 | 50.524 | 382 | 153 | 9 | 85 | 452 | 5 | 364 | 1.25e-111 | 333 |
| MsG0380012699.01.T01 | MTR_3g030360 | 51.451 | 379 | 142 | 12 | 86 | 453 | 5 | 352 | 2.75e-111 | 332 |
| MsG0380012699.01.T01 | MTR_1g007260 | 49.500 | 400 | 166 | 12 | 66 | 447 | 2 | 383 | 9.22e-110 | 330 |
| MsG0380012699.01.T01 | MTR_6g027100 | 49.614 | 389 | 161 | 11 | 86 | 454 | 5 | 378 | 6.45e-109 | 329 |
| MsG0380012699.01.T01 | MTR_3g092000 | 47.733 | 419 | 155 | 13 | 80 | 453 | 1 | 400 | 6.80e-109 | 328 |
| MsG0380012699.01.T01 | MTR_6g027040 | 48.843 | 389 | 164 | 10 | 86 | 454 | 5 | 378 | 1.12e-108 | 327 |
| MsG0380012699.01.T01 | MTR_6g018400 | 50.000 | 376 | 166 | 11 | 86 | 451 | 5 | 368 | 3.27e-108 | 325 |
| MsG0380012699.01.T01 | MTR_1g049170 | 48.522 | 406 | 147 | 16 | 85 | 453 | 5 | 385 | 1.76e-107 | 324 |
| MsG0380012699.01.T01 | MTR_3g029670 | 48.843 | 389 | 172 | 12 | 86 | 453 | 5 | 387 | 7.95e-103 | 312 |
| MsG0380012699.01.T01 | MTR_3g091990 | 47.739 | 398 | 163 | 13 | 85 | 453 | 6 | 387 | 1.62e-99 | 304 |
| MsG0380012699.01.T01 | MTR_3g029750 | 46.787 | 389 | 180 | 12 | 86 | 453 | 5 | 387 | 9.64e-98 | 299 |
| MsG0380012699.01.T01 | MTR_3g029840 | 48.285 | 379 | 160 | 15 | 85 | 453 | 4 | 356 | 2.03e-91 | 281 |
| MsG0380012699.01.T01 | MTR_3g029950 | 46.907 | 388 | 164 | 17 | 85 | 453 | 4 | 368 | 1.11e-88 | 275 |
| MsG0380012699.01.T01 | MTR_3g029620 | 44.845 | 388 | 182 | 15 | 84 | 453 | 1 | 374 | 2.02e-87 | 272 |
| MsG0380012699.01.T01 | MTR_3g029640 | 45.238 | 378 | 181 | 14 | 85 | 452 | 3 | 364 | 2.39e-86 | 269 |
| MsG0380012699.01.T01 | MTR_3g030355 | 42.963 | 405 | 179 | 16 | 86 | 453 | 6 | 395 | 7.11e-86 | 268 |
| MsG0380012699.01.T01 | MTR_3g030050 | 40.367 | 436 | 191 | 15 | 68 | 451 | 2 | 420 | 2.36e-81 | 258 |
| MsG0380012699.01.T01 | MTR_3g030560 | 42.820 | 383 | 194 | 15 | 85 | 453 | 3 | 374 | 1.11e-77 | 247 |
| MsG0380012699.01.T01 | MTR_3g029800 | 41.927 | 384 | 179 | 16 | 85 | 453 | 3 | 357 | 8.52e-76 | 241 |
| MsG0380012699.01.T01 | MTR_3g029820 | 43.846 | 390 | 144 | 17 | 76 | 453 | 2 | 328 | 1.20e-73 | 235 |
| MsG0380012699.01.T01 | MTR_3g058460 | 40.299 | 402 | 192 | 17 | 70 | 451 | 2 | 375 | 1.78e-72 | 233 |
| MsG0380012699.01.T01 | MTR_1g016540 | 63.687 | 179 | 53 | 3 | 284 | 451 | 1 | 178 | 4.25e-72 | 226 |
| MsG0380012699.01.T01 | MTR_3g029870 | 42.338 | 385 | 153 | 16 | 85 | 453 | 4 | 335 | 4.63e-72 | 231 |
| MsG0380012699.01.T01 | MTR_3g029900 | 46.082 | 319 | 141 | 14 | 142 | 451 | 161 | 457 | 7.29e-69 | 227 |
| MsG0380012699.01.T01 | MTR_7g005990 | 40.945 | 381 | 186 | 14 | 86 | 453 | 4 | 358 | 7.87e-68 | 221 |
| MsG0380012699.01.T01 | MTR_6g018370 | 43.396 | 318 | 104 | 8 | 86 | 389 | 4 | 259 | 1.23e-66 | 214 |
| MsG0380012699.01.T01 | MTR_3g047980 | 41.067 | 375 | 167 | 13 | 86 | 451 | 30 | 359 | 3.36e-64 | 211 |
| MsG0380012699.01.T01 | MTR_3g037710 | 44.635 | 233 | 102 | 7 | 241 | 454 | 41 | 265 | 5.68e-53 | 179 |
| MsG0380012699.01.T01 | MTR_5g042230 | 54.891 | 184 | 74 | 4 | 264 | 440 | 7 | 188 | 2.14e-52 | 175 |
| MsG0380012699.01.T01 | MTR_1g007250 | 58.434 | 166 | 58 | 5 | 284 | 444 | 1 | 160 | 5.26e-50 | 167 |
| MsG0380012699.01.T01 | MTR_1g007220 | 44.279 | 201 | 68 | 6 | 253 | 444 | 2 | 167 | 4.66e-41 | 144 |
| MsG0380012699.01.T01 | MTR_5g078450 | 53.901 | 141 | 36 | 3 | 319 | 453 | 2 | 119 | 1.47e-35 | 128 |
| MsG0380012699.01.T01 | MTR_8g074610 | 26.330 | 376 | 223 | 8 | 86 | 431 | 25 | 376 | 1.36e-30 | 122 |
| MsG0380012699.01.T01 | MTR_8g074640 | 28.490 | 351 | 205 | 11 | 86 | 405 | 6 | 341 | 2.01e-28 | 115 |
| MsG0380012699.01.T01 | MTR_2g041510 | 27.143 | 350 | 206 | 8 | 86 | 405 | 6 | 336 | 2.63e-28 | 115 |
| MsG0380012699.01.T01 | MTR_2g041510 | 27.143 | 350 | 206 | 8 | 86 | 405 | 26 | 356 | 4.97e-28 | 115 |
| MsG0380012699.01.T01 | MTR_4g022880 | 41.975 | 162 | 70 | 5 | 302 | 451 | 22 | 171 | 6.22e-26 | 104 |
| MsG0380012699.01.T01 | MTR_5g079830 | 25.656 | 343 | 205 | 10 | 84 | 403 | 4 | 319 | 2.22e-22 | 99.0 |
| MsG0380012699.01.T01 | MTR_8g035995 | 52.083 | 96 | 34 | 4 | 293 | 380 | 1 | 92 | 1.92e-20 | 88.2 |
| MsG0380012699.01.T01 | MTR_1g007200 | 52.475 | 101 | 35 | 5 | 340 | 435 | 1 | 93 | 2.69e-20 | 86.7 |
| MsG0380012699.01.T01 | MTR_1g007230 | 67.857 | 56 | 18 | 0 | 85 | 140 | 7 | 62 | 4.60e-20 | 84.7 |
| MsG0380012699.01.T01 | MTR_6g092570 | 26.230 | 366 | 209 | 11 | 86 | 423 | 8 | 340 | 2.99e-18 | 86.3 |
| MsG0380012699.01.T01 | MTR_7g012990 | 46.789 | 109 | 42 | 3 | 240 | 347 | 58 | 151 | 1.07e-17 | 80.9 |
| MsG0380012699.01.T01 | MTR_8g032080 | 43.750 | 96 | 46 | 2 | 216 | 303 | 4 | 99 | 3.04e-16 | 79.7 |
| MsG0380012699.01.T01 | MTR_6g009100 | 36.364 | 143 | 63 | 4 | 84 | 226 | 2 | 116 | 4.36e-14 | 68.9 |
| MsG0380012699.01.T01 | MTR_6g009620 | 39.216 | 102 | 49 | 4 | 170 | 262 | 27 | 124 | 4.86e-14 | 68.9 |
| MsG0380012699.01.T01 | MTR_6g075925 | 40.476 | 84 | 42 | 1 | 85 | 160 | 4 | 87 | 9.64e-13 | 64.3 |
| MsG0380012699.01.T01 | MTR_3g029850 | 29.630 | 162 | 58 | 3 | 290 | 451 | 11 | 116 | 1.70e-12 | 64.3 |
| MsG0380012699.01.T01 | MTR_3g114990 | 24.942 | 433 | 256 | 17 | 59 | 451 | 2 | 405 | 2.19e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012699.01.T01 | AT2G17030 | 32.203 | 413 | 220 | 12 | 84 | 455 | 1 | 394 | 1.24e-47 | 169 |
| MsG0380012699.01.T01 | AT2G17036 | 30.923 | 401 | 227 | 13 | 84 | 451 | 1 | 384 | 2.24e-44 | 160 |
| MsG0380012699.01.T01 | AT2G17036 | 30.827 | 399 | 226 | 13 | 86 | 451 | 2 | 383 | 1.14e-43 | 158 |
| MsG0380012699.01.T01 | AT5G24040 | 27.318 | 399 | 231 | 15 | 84 | 452 | 1 | 370 | 6.90e-25 | 105 |
| MsG0380012699.01.T01 | AT5G60060 | 28.818 | 347 | 196 | 15 | 77 | 393 | 3 | 328 | 4.46e-16 | 80.1 |
| MsG0380012699.01.T01 | AT1G64840 | 28.134 | 359 | 207 | 17 | 84 | 414 | 2 | 337 | 1.01e-13 | 73.2 |
| MsG0380012699.01.T01 | AT3G25750 | 24.173 | 393 | 230 | 17 | 85 | 447 | 4 | 358 | 2.91e-11 | 65.1 |
| MsG0380012699.01.T01 | AT3G25750 | 25.064 | 391 | 215 | 17 | 85 | 447 | 4 | 344 | 4.35e-11 | 64.7 |
Find 116 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAACCATGGACGACGAATT+AGG | 0.154696 | 3:-22946543 | None:intergenic |
| GGGTGAATTTGTTGAGTTTA+GGG | 0.240969 | 3:+22947112 | MsG0380012699.01.T01:CDS |
| CCAGTTAGTGGCTGAATCTT+TGG | 0.255048 | 3:+22946963 | MsG0380012699.01.T01:CDS |
| CAATGAAATCAGTTCCTAAA+TGG | 0.262277 | 3:-22946684 | None:intergenic |
| AGAGAAGTGGGTGTAAGATT+TGG | 0.267806 | 3:-22946597 | None:intergenic |
| GTGGCTGAATCTTTGGTTGC+TGG | 0.279649 | 3:+22946970 | MsG0380012699.01.T01:CDS |
| GAACTCTCTGTCATCCATTT+AGG | 0.284213 | 3:+22946670 | MsG0380012699.01.T01:CDS |
| TGAACATGTAATCAGGAATT+AGG | 0.286822 | 3:-22947913 | None:intergenic |
| GAGAAGTGGGTGTAAGATTT+GGG | 0.299965 | 3:-22946596 | None:intergenic |
| CAACCATGGACGACGAATTA+GGG | 0.302077 | 3:-22946542 | None:intergenic |
| CAGAACAAGTTAAAATATTC+AGG | 0.315125 | 3:-22947324 | None:intergenic |
| TGTGTTGGTGTTGTTGTTGA+TGG | 0.329351 | 3:-22946449 | None:intergenic |
| TGGGTGAATTTGTTGAGTTT+AGG | 0.333240 | 3:+22947111 | MsG0380012699.01.T01:CDS |
| CCAAAGATTCAGCCACTAAC+TGG | 0.366907 | 3:-22946963 | None:intergenic |
| GTAGACGTTTATGAGTCTTT+TGG | 0.369359 | 3:+22947039 | MsG0380012699.01.T01:CDS |
| CTGCAAAATGAGGTGGAATT+TGG | 0.373696 | 3:+22947948 | MsG0380012699.01.T01:three_prime_UTR |
| GTCAAAGAGGTTAATCTAGT+TGG | 0.375247 | 3:-22946055 | None:intergenic |
| CCGTTGGATAGGCATTCTAA+TGG | 0.388526 | 3:+22947972 | MsG0380012699.01.T01:three_prime_UTR |
| TTCGATCAGTCTGTTCCAAT+TGG | 0.397546 | 3:+22946344 | MsG0380012699.01.T01:CDS |
| ATTTGTTGAGTTTAGGGGAT+AGG | 0.402534 | 3:+22947118 | MsG0380012699.01.T01:CDS |
| TGAATCTTTGGTTGCTGGTG+GGG | 0.405382 | 3:+22946975 | MsG0380012699.01.T01:CDS |
| CTGAATCTTTGGTTGCTGGT+GGG | 0.407012 | 3:+22946974 | MsG0380012699.01.T01:CDS |
| AAAGATAACACAATTCCCTT+TGG | 0.414432 | 3:-22947199 | None:intergenic |
| CTTCATATGAACATGTAATC+AGG | 0.416901 | 3:-22947920 | None:intergenic |
| TTTGTTGAGTTTAGGGGATA+GGG | 0.424774 | 3:+22947119 | MsG0380012699.01.T01:CDS |
| TTTCTTGTTGTTGTGGTGGT+TGG | 0.425194 | 3:-22946513 | None:intergenic |
| TTTGAAGAGTGGAAATTTGA+AGG | 0.433973 | 3:-22946407 | None:intergenic |
| CCTTATGTGGTAGACAAAAC+TGG | 0.434163 | 3:+22946904 | MsG0380012699.01.T01:CDS |
| TTCATGAGGAGGAGAGGAGA+TGG | 0.439704 | 3:+22947091 | MsG0380012699.01.T01:CDS |
| CGCAGCGGCGGCATCATCCA+TGG | 0.443299 | 3:+22946231 | MsG0380012699.01.T01:CDS |
| GAATGCTGAGATGGTGCTTT+GGG | 0.443307 | 3:-22946381 | None:intergenic |
| TACTTACTGTTGAGCTTGAC+TGG | 0.443812 | 3:+22948118 | MsG0380012699.01.T01:three_prime_UTR |
| TGAGCATACAAATATAATAG+TGG | 0.445356 | 3:+22948170 | MsG0380012699.01.T01:three_prime_UTR |
| TCCGAACGCTCACATGGGTT+GGG | 0.446534 | 3:+22946000 | None:intergenic |
| TGGAATTTGGTCCGTTGGAT+AGG | 0.448781 | 3:+22947961 | MsG0380012699.01.T01:three_prime_UTR |
| GTAAACGCGCTGAGAATCAT+AGG | 0.448836 | 3:-22946778 | None:intergenic |
| ATGGGTTGGGATCATGCTCC+TGG | 0.450193 | 3:+22946013 | MsG0380012699.01.T01:CDS |
| GATGAGGAAGAAACTGCGTT+TGG | 0.457881 | 3:-22946491 | None:intergenic |
| ATCAGGAATTAGGAGTTTGT+TGG | 0.459928 | 3:-22947903 | None:intergenic |
| ACTGGACGGACGGTTACTCT+TGG | 0.460695 | 3:+22946922 | MsG0380012699.01.T01:CDS |
| GTTGTTGTGGTGGTTGGATG+AGG | 0.467278 | 3:-22946507 | None:intergenic |
| CTGATTTGTGTGTTTCCAAA+GGG | 0.473255 | 3:+22947184 | MsG0380012699.01.T01:CDS |
| AGAATTCGCCAATACTCAAC+TGG | 0.474574 | 3:+22946568 | MsG0380012699.01.T01:CDS |
| TTGACGATCCACTCTGGAGG+TGG | 0.479006 | 3:-22947348 | None:intergenic |
| TTTAATACAAGGGGCTAGAC+CGG | 0.479503 | 3:-22946137 | None:intergenic |
| TTGCTGCATTTCAACAGTAT+TGG | 0.480126 | 3:-22946814 | None:intergenic |
| TTTGAAATTAAAATTGAGGA+AGG | 0.481967 | 3:-22947232 | None:intergenic |
| ACAAATATAATAGTGGGATA+AGG | 0.483089 | 3:+22948177 | MsG0380012699.01.T01:three_prime_UTR |
| TGAAAAGATCGTTGCTTTCA+CGG | 0.483553 | 3:+22946741 | MsG0380012699.01.T01:CDS |
| GCTGAATCTTTGGTTGCTGG+TGG | 0.485390 | 3:+22946973 | MsG0380012699.01.T01:CDS |
| ATTTAATGGTTAATGTGCTT+AGG | 0.491158 | 3:+22947067 | MsG0380012699.01.T01:CDS |
| AGAATGCTGAGATGGTGCTT+TGG | 0.492340 | 3:-22946382 | None:intergenic |
| ATCTGACATCGGCGGCGCCA+TGG | 0.492384 | 3:-22946248 | None:intergenic |
| TCAAAGAGGTTAATCTAGTT+GGG | 0.492441 | 3:-22946054 | None:intergenic |
| TGAAATGCAGCAACGAGAAT+CGG | 0.493801 | 3:+22946824 | MsG0380012699.01.T01:CDS |
| ATGGAGTGAGATGAATCAAA+AGG | 0.498159 | 3:-22946637 | None:intergenic |
| AGAGAGTTCTTTGAAATCGA+TGG | 0.506150 | 3:-22946656 | None:intergenic |
| ATCAGACTCAGAAGCTCCAT+CGG | 0.506685 | 3:-22946283 | None:intergenic |
| GTCCGAACGCTCACATGGGT+TGG | 0.509608 | 3:+22945999 | None:intergenic |
| TGGCGCCGCCGATGTCAGAT+TGG | 0.512181 | 3:+22946251 | MsG0380012699.01.T01:CDS |
| GATGGAAGAAGAGCGCCAAT+TGG | 0.512909 | 3:-22946359 | None:intergenic |
| TATAATAGTGGGATAAGGCT+TGG | 0.521605 | 3:+22948182 | MsG0380012699.01.T01:three_prime_UTR |
| TGAGGTGGAATTTGGTCCGT+TGG | 0.523586 | 3:+22947956 | MsG0380012699.01.T01:three_prime_UTR |
| GAAAAGATCGTTGCTTTCAC+GGG | 0.524407 | 3:+22946742 | MsG0380012699.01.T01:CDS |
| AACTGGACAGTCAAGTCATC+CGG | 0.526453 | 3:-22946946 | None:intergenic |
| GCAGAAAGCAAACGCAGCGG+CGG | 0.530591 | 3:+22946219 | MsG0380012699.01.T01:CDS |
| AGAGATCGGAATTTGAAGAG+TGG | 0.531596 | 3:-22946418 | None:intergenic |
| TGACTTGACTGTCCAGTTAG+TGG | 0.533132 | 3:+22946951 | MsG0380012699.01.T01:CDS |
| GGTGAATTTGTTGAGTTTAG+GGG | 0.550624 | 3:+22947113 | MsG0380012699.01.T01:CDS |
| GAATAGAGATGAAAACAACT+AGG | 0.551730 | 3:+22946188 | MsG0380012699.01.T01:CDS |
| AAACCCTAATTCGTCGTCCA+TGG | 0.552745 | 3:+22946539 | MsG0380012699.01.T01:CDS |
| ATTTACAGACTTGAGTCAGA+TGG | 0.556454 | 3:+22948224 | MsG0380012699.01.T01:three_prime_UTR |
| ATGATTGATATGAGAGAAGT+GGG | 0.558085 | 3:-22946609 | None:intergenic |
| TGATGGAATCAGAGAGAGAT+CGG | 0.558270 | 3:-22946432 | None:intergenic |
| TTATTCCTGTCATGTCTACC+AGG | 0.558407 | 3:+22946851 | MsG0380012699.01.T01:CDS |
| GCGTTTGGAAATGTAGCAGA+AGG | 0.561434 | 3:-22946476 | None:intergenic |
| GAGCATACAAATATAATAGT+GGG | 0.563357 | 3:+22948171 | MsG0380012699.01.T01:three_prime_UTR |
| TCAGACTCAGAAGCTCCATC+GGG | 0.566431 | 3:-22946282 | None:intergenic |
| TTGAAGAGTGGAAATTTGAA+GGG | 0.569216 | 3:-22946406 | None:intergenic |
| TGGCGAATTCTTACCAACCA+TGG | 0.569293 | 3:-22946556 | None:intergenic |
| TGTGCTTAGGCTTCATGAGG+AGG | 0.573363 | 3:+22947080 | MsG0380012699.01.T01:CDS |
| AATGCAGATGTCTTCTAACC+TGG | 0.573432 | 3:-22946869 | None:intergenic |
| TGGAGTGAGATGAATCAAAA+GGG | 0.575730 | 3:-22946636 | None:intergenic |
| TTAGGCTTCATGAGGAGGAG+AGG | 0.576235 | 3:+22947085 | MsG0380012699.01.T01:CDS |
| CCTAATTCGTCGTCCATGGT+TGG | 0.576274 | 3:+22946543 | MsG0380012699.01.T01:CDS |
| TCTAACCTGGTAGACATGAC+AGG | 0.581853 | 3:-22946856 | None:intergenic |
| TCATGAGGAGGAGAGGAGAT+GGG | 0.581960 | 3:+22947092 | MsG0380012699.01.T01:CDS |
| GCTGAGATGGTGCTTTGGGA+TGG | 0.583782 | 3:-22946377 | None:intergenic |
| AATAGAGATGAAAACAACTA+GGG | 0.588481 | 3:+22946189 | MsG0380012699.01.T01:CDS |
| GATGATTGATATGAGAGAAG+TGG | 0.588790 | 3:-22946610 | None:intergenic |
| TCTGATTTGTGTGTTTCCAA+AGG | 0.594365 | 3:+22947183 | MsG0380012699.01.T01:CDS |
| AAATCACAACTTTCTTACAA+AGG | 0.594785 | 3:-22948008 | None:intergenic |
| GTACATGTAGTCAGAGAGCA+AGG | 0.597436 | 3:-22946716 | None:intergenic |
| AACATCAGCTGACGTCAAAG+AGG | 0.597592 | 3:-22946068 | None:intergenic |
| CAAGTTCTTAGTCGAGAGCG+AGG | 0.604122 | 3:+22947002 | MsG0380012699.01.T01:CDS |
| TGTTGCTCATAGACAAAACC+AGG | 0.615644 | 3:-22946031 | None:intergenic |
| AGATTGGTCTGCACTCCCGA+TGG | 0.615684 | 3:+22946267 | MsG0380012699.01.T01:CDS |
| TAATGTGCTTAGGCTTCATG+AGG | 0.616510 | 3:+22947077 | MsG0380012699.01.T01:CDS |
| TGAAGAGATGCTGCAAAATG+AGG | 0.617657 | 3:+22947938 | MsG0380012699.01.T01:three_prime_UTR |
| ACGGACGGTTACTCTTGGAC+CGG | 0.618336 | 3:+22946927 | MsG0380012699.01.T01:CDS |
| GTAGCAGAAGGGAAGTGTGT+TGG | 0.634853 | 3:-22946464 | None:intergenic |
| TGTTCTGGCCACCTCCAGAG+TGG | 0.642667 | 3:+22947340 | MsG0380012699.01.T01:CDS |
| GATTCTAGATCACAGAGACA+TGG | 0.645053 | 3:-22948342 | None:intergenic |
| GAAGCAGAAAGCAAACGCAG+CGG | 0.653230 | 3:+22946216 | MsG0380012699.01.T01:CDS |
| CCATTAGAATGCCTATCCAA+CGG | 0.653774 | 3:-22947972 | None:intergenic |
| AACAAGTAAAGACTTATACA+TGG | 0.655556 | 3:-22948263 | None:intergenic |
| AACAAGTTAAAATATTCAGG+AGG | 0.659265 | 3:-22947321 | None:intergenic |
| AGAGATGCTGCAAAATGAGG+TGG | 0.662863 | 3:+22947941 | MsG0380012699.01.T01:three_prime_UTR |
| TGAAGGGTAGAATGCTGAGA+TGG | 0.662872 | 3:-22946390 | None:intergenic |
| CGTTTGGAAATGTAGCAGAA+GGG | 0.664581 | 3:-22946475 | None:intergenic |
| GGTAGACAAAACTGGACGGA+CGG | 0.667615 | 3:+22946912 | MsG0380012699.01.T01:CDS |
| AAGTTCTTAGTCGAGAGCGA+GGG | 0.668484 | 3:+22947003 | MsG0380012699.01.T01:CDS |
| TCAGGAGGACAATCAGACAA+AGG | 0.675081 | 3:-22947306 | None:intergenic |
| AGTGCAGACCAATCTGACAT+CGG | 0.686152 | 3:-22946259 | None:intergenic |
| GCAGACCAATCTGACATCGG+CGG | 0.695996 | 3:-22946256 | None:intergenic |
| ATGTGGTAGACAAAACTGGA+CGG | 0.697171 | 3:+22946908 | MsG0380012699.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAAAAACATACAATA+TGG | + | Chr3:22947246-22947265 | MsG0380012699.01.T01:CDS | 15.0% |
| !! | ATTTCAAAAACATACAATAT+GGG | + | Chr3:22947247-22947266 | MsG0380012699.01.T01:CDS | 15.0% |
| !! | TAAAATGTAAAAATGAATAC+AGG | + | Chr3:22947773-22947792 | MsG0380012699.01.T01:intron | 15.0% |
| !! | TGAAATAAATTTAACAATGT+TGG | + | Chr3:22947830-22947849 | MsG0380012699.01.T01:intron | 15.0% |
| !!! | CTTTTTGTTTTTTAATACAA+GGG | - | Chr3:22946150-22946169 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTTTTTTAATACA+AGG | - | Chr3:22946151-22946170 | None:intergenic | 15.0% |
| !!! | TGTTTTTGAAATTAAAATTG+AGG | - | Chr3:22947239-22947258 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTTAATACAAG+GGG | - | Chr3:22946149-22946168 | None:intergenic | 15.0% |
| !! | AATAAATTTAACAATGTTGG+TGG | + | Chr3:22947833-22947852 | MsG0380012699.01.T01:intron | 20.0% |
| !! | ATAAATTTAACAATGTTGGT+GGG | + | Chr3:22947834-22947853 | MsG0380012699.01.T01:intron | 20.0% |
| !!! | CTATTCTTTTTTTTTGTCTT+TGG | - | Chr3:22946174-22946193 | None:intergenic | 20.0% |
| !!! | TCATGTTTATGTTATTTTGA+TGG | + | Chr3:22948042-22948061 | MsG0380012699.01.T01:three_prime_UTR | 20.0% |
| !!! | TTCATAATAATAACTTGTCA+TGG | - | Chr3:22947805-22947824 | None:intergenic | 20.0% |
| !!! | TTTGAAATTAAAATTGAGGA+AGG | - | Chr3:22947235-22947254 | None:intergenic | 20.0% |
| ! | AAATCACAACTTTCTTACAA+AGG | - | Chr3:22948011-22948030 | None:intergenic | 25.0% |
| ! | AACAAGTAAAGACTTATACA+TGG | - | Chr3:22948266-22948285 | None:intergenic | 25.0% |
| ! | AACAAGTTAAAATATTCAGG+AGG | - | Chr3:22947324-22947343 | None:intergenic | 25.0% |
| ! | AATAGAGATGAAAACAACTA+GGG | + | Chr3:22946189-22946208 | MsG0380012699.01.T01:CDS | 25.0% |
| ! | ATTTAATGGTTAATGTGCTT+AGG | + | Chr3:22947067-22947086 | MsG0380012699.01.T01:CDS | 25.0% |
| ! | CAGAACAAGTTAAAATATTC+AGG | - | Chr3:22947327-22947346 | None:intergenic | 25.0% |
| ! | GAGCATACAAATATAATAGT+GGG | + | Chr3:22948171-22948190 | MsG0380012699.01.T01:three_prime_UTR | 25.0% |
| ! | GTATGTTATCTTGCATTAAA+AGG | + | Chr3:22947393-22947412 | MsG0380012699.01.T01:intron | 25.0% |
| ! | TGAGCATACAAATATAATAG+TGG | + | Chr3:22948170-22948189 | MsG0380012699.01.T01:three_prime_UTR | 25.0% |
| !! | ACAAATATAATAGTGGGATA+AGG | + | Chr3:22948177-22948196 | MsG0380012699.01.T01:three_prime_UTR | 25.0% |
| !!! | CTGAATATTTTAACTTGTTC+TGG | + | Chr3:22947325-22947344 | MsG0380012699.01.T01:CDS | 25.0% |
| !!! | TGTTTAGTTTTGTCTTTTTC+CGG | + | Chr3:22946118-22946137 | MsG0380012699.01.T01:CDS | 25.0% |
| AAAGATAACACAATTCCCTT+TGG | - | Chr3:22947202-22947221 | None:intergenic | 30.0% | |
| ATGATTGATATGAGAGAAGT+GGG | - | Chr3:22946612-22946631 | None:intergenic | 30.0% | |
| CAATGAAATCAGTTCCTAAA+TGG | - | Chr3:22946687-22946706 | None:intergenic | 30.0% | |
| CTTCATATGAACATGTAATC+AGG | - | Chr3:22947923-22947942 | None:intergenic | 30.0% | |
| GAATAGAGATGAAAACAACT+AGG | + | Chr3:22946188-22946207 | MsG0380012699.01.T01:CDS | 30.0% | |
| GTAAACATATAGTCTGCAAA+AGG | - | Chr3:22947884-22947903 | None:intergenic | 30.0% | |
| TCAAAGAGGTTAATCTAGTT+GGG | - | Chr3:22946057-22946076 | None:intergenic | 30.0% | |
| TGAACATGTAATCAGGAATT+AGG | - | Chr3:22947916-22947935 | None:intergenic | 30.0% | |
| TTGAAGAGTGGAAATTTGAA+GGG | - | Chr3:22946409-22946428 | None:intergenic | 30.0% | |
| TTTGAAGAGTGGAAATTTGA+AGG | - | Chr3:22946410-22946429 | None:intergenic | 30.0% | |
| ! | AATTTTCCTTTGATGTGTGT+CGG | + | Chr3:22948288-22948307 | MsG0380012699.01.T01:three_prime_UTR | 30.0% |
| ! | ACATCTGCATTTTCAAAAAG+CGG | + | Chr3:22946881-22946900 | MsG0380012699.01.T01:CDS | 30.0% |
| !!! | GTCTTTTGGTTTGGATTTAA+TGG | + | Chr3:22947053-22947072 | MsG0380012699.01.T01:CDS | 30.0% |
| !!! | GTTTGTTTTTCTTGTTGTTG+TGG | - | Chr3:22946523-22946542 | None:intergenic | 30.0% |
| !!! | TTTCAACAGTATTGGTTTTG+AGG | - | Chr3:22946809-22946828 | None:intergenic | 30.0% |
| ATCAGGAATTAGGAGTTTGT+TGG | - | Chr3:22947906-22947925 | None:intergenic | 35.0% | |
| ATGGAGTGAGATGAATCAAA+AGG | - | Chr3:22946640-22946659 | None:intergenic | 35.0% | |
| ATTTACAGACTTGAGTCAGA+TGG | + | Chr3:22948224-22948243 | MsG0380012699.01.T01:three_prime_UTR | 35.0% | |
| GATGATTGATATGAGAGAAG+TGG | - | Chr3:22946613-22946632 | None:intergenic | 35.0% | |
| GTCAAAGAGGTTAATCTAGT+TGG | - | Chr3:22946058-22946077 | None:intergenic | 35.0% | |
| TGGAGTGAGATGAATCAAAA+GGG | - | Chr3:22946639-22946658 | None:intergenic | 35.0% | |
| TTGCTGCATTTCAACAGTAT+TGG | - | Chr3:22946817-22946836 | None:intergenic | 35.0% | |
| TTTGTTGAGTTTAGGGGATA+GGG | + | Chr3:22947119-22947138 | MsG0380012699.01.T01:CDS | 35.0% | |
| ! | ATGAAGAGCGTGTGAAAAAT+TGG | - | Chr3:22947665-22947684 | None:intergenic | 35.0% |
| ! | ATTTGTTGAGTTTAGGGGAT+AGG | + | Chr3:22947118-22947137 | MsG0380012699.01.T01:CDS | 35.0% |
| ! | CTGATTTGTGTGTTTCCAAA+GGG | + | Chr3:22947184-22947203 | MsG0380012699.01.T01:CDS | 35.0% |
| ! | GTAGACGTTTATGAGTCTTT+TGG | + | Chr3:22947039-22947058 | MsG0380012699.01.T01:CDS | 35.0% |
| ! | TATAATAGTGGGATAAGGCT+TGG | + | Chr3:22948182-22948201 | MsG0380012699.01.T01:three_prime_UTR | 35.0% |
| ! | TCTGATTTGTGTGTTTCCAA+AGG | + | Chr3:22947183-22947202 | MsG0380012699.01.T01:CDS | 35.0% |
| ! | TGAAAAGATCGTTGCTTTCA+CGG | + | Chr3:22946741-22946760 | MsG0380012699.01.T01:CDS | 35.0% |
| ! | TGAAAGCAACGATCTTTTCA+GGG | - | Chr3:22946741-22946760 | None:intergenic | 35.0% |
| ! | TTTTATCCGACACACATCAA+AGG | - | Chr3:22948297-22948316 | None:intergenic | 35.0% |
| !! | AGAGAGTTCTTTGAAATCGA+TGG | - | Chr3:22946659-22946678 | None:intergenic | 35.0% |
| !! | CGTTTATGAGTCTTTTGGTT+TGG | + | Chr3:22947044-22947063 | MsG0380012699.01.T01:CDS | 35.0% |
| !! | GGGTGAATTTGTTGAGTTTA+GGG | + | Chr3:22947112-22947131 | MsG0380012699.01.T01:CDS | 35.0% |
| !! | GGTGAATTTGTTGAGTTTAG+GGG | + | Chr3:22947113-22947132 | MsG0380012699.01.T01:CDS | 35.0% |
| !! | TGGGAATTGTGTTTTTGACT+TGG | + | Chr3:22947266-22947285 | MsG0380012699.01.T01:CDS | 35.0% |
| !! | TGGGTGAATTTGTTGAGTTT+AGG | + | Chr3:22947111-22947130 | MsG0380012699.01.T01:CDS | 35.0% |
| !!! | TGTGTTTTTGACTTGGATGA+AGG | + | Chr3:22947273-22947292 | MsG0380012699.01.T01:CDS | 35.0% |
| !!! | TGTTTTTCTTGTTGTTGTGG+TGG | - | Chr3:22946520-22946539 | None:intergenic | 35.0% |
| !!! | TTTTTGACTTGGATGAAGGT+CGG | + | Chr3:22947277-22947296 | MsG0380012699.01.T01:CDS | 35.0% |
| AATGCAGATGTCTTCTAACC+TGG | - | Chr3:22946872-22946891 | None:intergenic | 40.0% | |
| AGAATTCGCCAATACTCAAC+TGG | + | Chr3:22946568-22946587 | MsG0380012699.01.T01:CDS | 40.0% | |
| AGAGAAGTGGGTGTAAGATT+TGG | - | Chr3:22946600-22946619 | None:intergenic | 40.0% | |
| AGAGATCGGAATTTGAAGAG+TGG | - | Chr3:22946421-22946440 | None:intergenic | 40.0% | |
| ATGTGGTAGACAAAACTGGA+CGG | + | Chr3:22946908-22946927 | MsG0380012699.01.T01:CDS | 40.0% | |
| CCATTAGAATGCCTATCCAA+CGG | - | Chr3:22947975-22947994 | None:intergenic | 40.0% | |
| CCTTATGTGGTAGACAAAAC+TGG | + | Chr3:22946904-22946923 | MsG0380012699.01.T01:CDS | 40.0% | |
| CGTTTGGAAATGTAGCAGAA+GGG | - | Chr3:22946478-22946497 | None:intergenic | 40.0% | |
| CTGCAAAATGAGGTGGAATT+TGG | + | Chr3:22947948-22947967 | MsG0380012699.01.T01:three_prime_UTR | 40.0% | |
| GAACTCTCTGTCATCCATTT+AGG | + | Chr3:22946670-22946689 | MsG0380012699.01.T01:CDS | 40.0% | |
| GAGAAGTGGGTGTAAGATTT+GGG | - | Chr3:22946599-22946618 | None:intergenic | 40.0% | |
| TAATGTGCTTAGGCTTCATG+AGG | + | Chr3:22947077-22947096 | MsG0380012699.01.T01:CDS | 40.0% | |
| TACTTACTGTTGAGCTTGAC+TGG | + | Chr3:22948118-22948137 | MsG0380012699.01.T01:three_prime_UTR | 40.0% | |
| TGAAATGCAGCAACGAGAAT+CGG | + | Chr3:22946824-22946843 | MsG0380012699.01.T01:CDS | 40.0% | |
| TGAAGAGATGCTGCAAAATG+AGG | + | Chr3:22947938-22947957 | MsG0380012699.01.T01:three_prime_UTR | 40.0% | |
| TGATGGAATCAGAGAGAGAT+CGG | - | Chr3:22946435-22946454 | None:intergenic | 40.0% | |
| TGTTGCTCATAGACAAAACC+AGG | - | Chr3:22946034-22946053 | None:intergenic | 40.0% | |
| TTATTCCTGTCATGTCTACC+AGG | + | Chr3:22946851-22946870 | MsG0380012699.01.T01:CDS | 40.0% | |
| TTCGATCAGTCTGTTCCAAT+TGG | + | Chr3:22946344-22946363 | MsG0380012699.01.T01:CDS | 40.0% | |
| TTTAATACAAGGGGCTAGAC+CGG | - | Chr3:22946140-22946159 | None:intergenic | 40.0% | |
| ! | GAAAAGATCGTTGCTTTCAC+GGG | + | Chr3:22946742-22946761 | MsG0380012699.01.T01:CDS | 40.0% |
| ! | GTGAAAGCAACGATCTTTTC+AGG | - | Chr3:22946742-22946761 | None:intergenic | 40.0% |
| ! | TTTCAAAAAGCGGCCTTATG+TGG | + | Chr3:22946891-22946910 | MsG0380012699.01.T01:CDS | 40.0% |
| !! | CCAGTTTTGTCTACCACATA+AGG | - | Chr3:22946907-22946926 | None:intergenic | 40.0% |
| !! | TGTGTTGGTGTTGTTGTTGA+TGG | - | Chr3:22946452-22946471 | None:intergenic | 40.0% |
| !! | TTTCTTGTTGTTGTGGTGGT+TGG | - | Chr3:22946516-22946535 | None:intergenic | 40.0% |
| !!! | CAGTATTGGTTTTGAGGTAC+AGG | - | Chr3:22946803-22946822 | None:intergenic | 40.0% |
| !!! | TTTTGACTTGGATGAAGGTC+GGG | + | Chr3:22947278-22947297 | MsG0380012699.01.T01:CDS | 40.0% |
| AAACCCTAATTCGTCGTCCA+TGG | + | Chr3:22946539-22946558 | MsG0380012699.01.T01:CDS | 45.0% | |
| AACATCAGCTGACGTCAAAG+AGG | - | Chr3:22946071-22946090 | None:intergenic | 45.0% | |
| AACTGGACAGTCAAGTCATC+CGG | - | Chr3:22946949-22946968 | None:intergenic | 45.0% | |
| AAGTTCTTAGTCGAGAGCGA+GGG | + | Chr3:22947003-22947022 | MsG0380012699.01.T01:CDS | 45.0% | |
| AGAATGCTGAGATGGTGCTT+TGG | - | Chr3:22946385-22946404 | None:intergenic | 45.0% | |
| AGAGATGCTGCAAAATGAGG+TGG | + | Chr3:22947941-22947960 | MsG0380012699.01.T01:three_prime_UTR | 45.0% | |
| AGTGCAGACCAATCTGACAT+CGG | - | Chr3:22946262-22946281 | None:intergenic | 45.0% | |
| ATCAGACTCAGAAGCTCCAT+CGG | - | Chr3:22946286-22946305 | None:intergenic | 45.0% | |
| CAACCATGGACGACGAATTA+GGG | - | Chr3:22946545-22946564 | None:intergenic | 45.0% | |
| CCAAAGATTCAGCCACTAAC+TGG | - | Chr3:22946966-22946985 | None:intergenic | 45.0% | |
| CCAGTTAGTGGCTGAATCTT+TGG | + | Chr3:22946963-22946982 | MsG0380012699.01.T01:CDS | 45.0% | |
| CCGTTGGATAGGCATTCTAA+TGG | + | Chr3:22947972-22947991 | MsG0380012699.01.T01:three_prime_UTR | 45.0% | |
| CTGAATCTTTGGTTGCTGGT+GGG | + | Chr3:22946974-22946993 | MsG0380012699.01.T01:CDS | 45.0% | |
| GAATGCTGAGATGGTGCTTT+GGG | - | Chr3:22946384-22946403 | None:intergenic | 45.0% | |
| GATGAGGAAGAAACTGCGTT+TGG | - | Chr3:22946494-22946513 | None:intergenic | 45.0% | |
| GCGTTTGGAAATGTAGCAGA+AGG | - | Chr3:22946479-22946498 | None:intergenic | 45.0% | |
| GTAAACGCGCTGAGAATCAT+AGG | - | Chr3:22946781-22946800 | None:intergenic | 45.0% | |
| GTACATGTAGTCAGAGAGCA+AGG | - | Chr3:22946719-22946738 | None:intergenic | 45.0% | |
| TCAGGAGGACAATCAGACAA+AGG | - | Chr3:22947309-22947328 | None:intergenic | 45.0% | |
| TCTAACCTGGTAGACATGAC+AGG | - | Chr3:22946859-22946878 | None:intergenic | 45.0% | |
| TGAAGGGTAGAATGCTGAGA+TGG | - | Chr3:22946393-22946412 | None:intergenic | 45.0% | |
| TGAATCTTTGGTTGCTGGTG+GGG | + | Chr3:22946975-22946994 | MsG0380012699.01.T01:CDS | 45.0% | |
| TGACTTGACTGTCCAGTTAG+TGG | + | Chr3:22946951-22946970 | MsG0380012699.01.T01:CDS | 45.0% | |
| TGGAATTTGGTCCGTTGGAT+AGG | + | Chr3:22947961-22947980 | MsG0380012699.01.T01:three_prime_UTR | 45.0% | |
| TGGCGAATTCTTACCAACCA+TGG | - | Chr3:22946559-22946578 | None:intergenic | 45.0% | |
| ! | CTTCTTTTGACGATCCACTC+TGG | - | Chr3:22947357-22947376 | None:intergenic | 45.0% |
| ! | GGGTTTTGCCAGTTGAGTAT+TGG | - | Chr3:22946579-22946598 | None:intergenic | 45.0% |
| !!! | AGGGGATAGGGTTTTGTTCT+TGG | + | Chr3:22947131-22947150 | MsG0380012699.01.T01:CDS | 45.0% |
| !!! | AGGGTTTTGTTCTTGGGGAA+TGG | + | Chr3:22947138-22947157 | MsG0380012699.01.T01:CDS | 45.0% |
| !!! | GGGATAGGGTTTTGTTCTTG+GGG | + | Chr3:22947133-22947152 | MsG0380012699.01.T01:CDS | 45.0% |
| !!! | GGGGATAGGGTTTTGTTCTT+GGG | + | Chr3:22947132-22947151 | MsG0380012699.01.T01:CDS | 45.0% |
| CAAGTTCTTAGTCGAGAGCG+AGG | + | Chr3:22947002-22947021 | MsG0380012699.01.T01:CDS | 50.0% | |
| CCAACCATGGACGACGAATT+AGG | - | Chr3:22946546-22946565 | None:intergenic | 50.0% | |
| CCTAATTCGTCGTCCATGGT+TGG | + | Chr3:22946543-22946562 | MsG0380012699.01.T01:CDS | 50.0% | |
| GAAGCAGAAAGCAAACGCAG+CGG | + | Chr3:22946216-22946235 | MsG0380012699.01.T01:CDS | 50.0% | |
| GCTGAATCTTTGGTTGCTGG+TGG | + | Chr3:22946973-22946992 | MsG0380012699.01.T01:CDS | 50.0% | |
| GGTAGACAAAACTGGACGGA+CGG | + | Chr3:22946912-22946931 | MsG0380012699.01.T01:CDS | 50.0% | |
| GTGGCTGAATCTTTGGTTGC+TGG | + | Chr3:22946970-22946989 | MsG0380012699.01.T01:CDS | 50.0% | |
| GTTGTTGTGGTGGTTGGATG+AGG | - | Chr3:22946510-22946529 | None:intergenic | 50.0% | |
| TCAGACTCAGAAGCTCCATC+GGG | - | Chr3:22946285-22946304 | None:intergenic | 50.0% | |
| TCATGAGGAGGAGAGGAGAT+GGG | + | Chr3:22947092-22947111 | MsG0380012699.01.T01:CDS | 50.0% | |
| TGAGGTGGAATTTGGTCCGT+TGG | + | Chr3:22947956-22947975 | MsG0380012699.01.T01:three_prime_UTR | 50.0% | |
| TGTGCTTAGGCTTCATGAGG+AGG | + | Chr3:22947080-22947099 | MsG0380012699.01.T01:CDS | 50.0% | |
| TTAGGCTTCATGAGGAGGAG+AGG | + | Chr3:22947085-22947104 | MsG0380012699.01.T01:CDS | 50.0% | |
| TTCATGAGGAGGAGAGGAGA+TGG | + | Chr3:22947091-22947110 | MsG0380012699.01.T01:CDS | 50.0% | |
| ! | CTTTTGACGATCCACTCTGG+AGG | - | Chr3:22947354-22947373 | None:intergenic | 50.0% |
| ! | GTAGCAGAAGGGAAGTGTGT+TGG | - | Chr3:22946467-22946486 | None:intergenic | 50.0% |
| !! | GATGGAAGAAGAGCGCCAAT+TGG | - | Chr3:22946362-22946381 | None:intergenic | 50.0% |
| ACGGACGGTTACTCTTGGAC+CGG | + | Chr3:22946927-22946946 | MsG0380012699.01.T01:CDS | 55.0% | |
| ACTGGACGGACGGTTACTCT+TGG | + | Chr3:22946922-22946941 | MsG0380012699.01.T01:CDS | 55.0% | |
| GCAGACCAATCTGACATCGG+CGG | - | Chr3:22946259-22946278 | None:intergenic | 55.0% | |
| ! | TTGACGATCCACTCTGGAGG+TGG | - | Chr3:22947351-22947370 | None:intergenic | 55.0% |
| !! | AGATTGGTCTGCACTCCCGA+TGG | + | Chr3:22946267-22946286 | MsG0380012699.01.T01:CDS | 55.0% |
| !! | ATGGGTTGGGATCATGCTCC+TGG | + | Chr3:22946013-22946032 | MsG0380012699.01.T01:CDS | 55.0% |
| !! | GCTGAGATGGTGCTTTGGGA+TGG | - | Chr3:22946380-22946399 | None:intergenic | 55.0% |
| GCAGAAAGCAAACGCAGCGG+CGG | + | Chr3:22946219-22946238 | MsG0380012699.01.T01:CDS | 60.0% | |
| TGTTCTGGCCACCTCCAGAG+TGG | + | Chr3:22947340-22947359 | MsG0380012699.01.T01:CDS | 60.0% | |
| ATCTGACATCGGCGGCGCCA+TGG | - | Chr3:22946251-22946270 | None:intergenic | 65.0% | |
| TGGCGCCGCCGATGTCAGAT+TGG | + | Chr3:22946251-22946270 | MsG0380012699.01.T01:CDS | 65.0% | |
| CGCAGCGGCGGCATCATCCA+TGG | + | Chr3:22946231-22946250 | MsG0380012699.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 22946013 | 22948351 | 22946013 | ID=MsG0380012699.01;Name=MsG0380012699.01 |
| Chr3 | mRNA | 22946013 | 22948351 | 22946013 | ID=MsG0380012699.01.T01;Parent=MsG0380012699.01;Name=MsG0380012699.01.T01;_AED=0.44;_eAED=0.44;_QI=0|1|0.5|1|0|0|2|473|455 |
| Chr3 | exon | 22946013 | 22947392 | 22946013 | ID=MsG0380012699.01.T01:exon:8485;Parent=MsG0380012699.01.T01 |
| Chr3 | exon | 22947891 | 22948351 | 22947891 | ID=MsG0380012699.01.T01:exon:8486;Parent=MsG0380012699.01.T01 |
| Chr3 | CDS | 22946013 | 22947380 | 22946013 | ID=MsG0380012699.01.T01:cds;Parent=MsG0380012699.01.T01 |
| Chr3 | three_prime_UTR | 22947381 | 22947392 | 22947381 | ID=MsG0380012699.01.T01:three_prime_utr;Parent=MsG0380012699.01.T01 |
| Chr3 | three_prime_UTR | 22947891 | 22948351 | 22947891 | ID=MsG0380012699.01.T01:three_prime_utr;Parent=MsG0380012699.01.T01 |
| Gene Sequence |
| Protein sequence |
