AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044565.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044565.01.T01 MTR_4g077700 82.105 190 19 2 94 268 617 806 9.21e-95 296
MsG0880044565.01.T01 MTR_4g122580 70.000 180 38 3 104 268 621 799 3.29e-72 236
MsG0880044565.01.T01 MTR_3g093870 40.719 167 83 3 117 268 223 388 3.83e-29 114
MsG0880044565.01.T01 MTR_4g040350 38.415 164 80 2 125 267 93 256 3.24e-22 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044565.01.T01 AT4G13780 56.989 186 65 2 98 268 612 797 1.08e-56 194
MsG0880044565.01.T01 AT2G40660 42.683 164 78 3 120 268 227 389 1.72e-30 117
MsG0880044565.01.T01 AT3G59980 38.095 168 83 2 121 267 105 272 8.91e-23 94.7

Find 65 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCCCAAACTTTCTTCTT+TGG 0.196528 8:+44737871 None:intergenic
AGCCTTGTGATGGTAATTTC+TGG 0.259177 8:+44738433 None:intergenic
GATTTAGCGTAGATGTCTTT+AGG 0.278677 8:+44739756 None:intergenic
TCCTCACTCTTGATGTTGAT+TGG 0.302058 8:+44739832 None:intergenic
TGGATCCAAAGAAGAAAGTT+TGG 0.311234 8:-44737876 MsG0880044565.01.T01:CDS
TTGATGCCCCTCATGGTTGC+TGG 0.337669 8:+44738133 None:intergenic
TTTGGATCCAAGAGTTCATC+TGG 0.338301 8:+44737889 None:intergenic
ACCTTTAGGTATCACATTCC+CGG 0.350185 8:-44737926 MsG0880044565.01.T01:intron
CCTCACTCTTGATGTTGATT+GGG 0.374726 8:+44739833 None:intergenic
TTGTGACTGCACAGTTTGTT+TGG 0.394463 8:-44739715 MsG0880044565.01.T01:CDS
GACATCCGCCGTTGGTTTCA+AGG 0.396794 8:-44739891 MsG0880044565.01.T01:CDS
GGATCCAAAGAAGAAAGTTT+GGG 0.427300 8:-44737875 MsG0880044565.01.T01:CDS
TGGGACTCCACATCGTTGTT+GGG 0.431660 8:+44739852 None:intergenic
TTGGGACTCCACATCGTTGT+TGG 0.432072 8:+44739851 None:intergenic
TTTAGGAATGGCGTTTATAA+CGG 0.454598 8:+44739773 None:intergenic
TGAAACCAACGGCGGATGTC+AGG 0.465502 8:+44739894 None:intergenic
CCTTTAGGTATCACATTCCC+GGG 0.469390 8:-44737925 MsG0880044565.01.T01:intron
AGCAGCAAGAACCATTGCTT+GGG 0.478236 8:+44738108 None:intergenic
AGGCAATCCAGATGAACTCT+TGG 0.483778 8:-44737896 MsG0880044565.01.T01:CDS
CCGTATGGTCCCATTGCCTA+TGG 0.487513 8:+44737756 None:intergenic
GACATCTACGCTAAATCTAA+AGG 0.488903 8:-44739750 MsG0880044565.01.T01:CDS
AGCGTAGATGTCTTTAGGAA+TGG 0.490587 8:+44739761 None:intergenic
TACATTGGTGTGATCAGCGT+TGG 0.492857 8:+44738084 None:intergenic
ACATACAGTGAATCTGCATC+AGG 0.495378 8:+44738370 None:intergenic
AAGCAGCAAGAACCATTGCT+TGG 0.500918 8:+44738107 None:intergenic
ATCACATTCCCGGGGTATGA+AGG 0.502161 8:-44737916 MsG0880044565.01.T01:CDS
ACGCTGATCACACCAATGTA+AGG 0.511892 8:-44738081 MsG0880044565.01.T01:CDS
TTGGGATTTGATGCCCCTCA+TGG 0.513052 8:+44738126 None:intergenic
CGGTTCCATCCATAGGCAAT+GGG 0.521640 8:-44737765 MsG0880044565.01.T01:CDS
ATTTGCACGGTTCCATCCAT+AGG 0.521790 8:-44737772 MsG0880044565.01.T01:CDS
TTTGATGTTTGTCTACCGTA+TGG 0.525122 8:+44737741 None:intergenic
TCTGGATTGCCTTCATACCC+CGG 0.527809 8:+44737907 None:intergenic
CACATCAGCTGGCATTTGCA+CGG 0.536466 8:-44737785 MsG0880044565.01.T01:CDS
ACAAGGCTTGATATTCGAGT+TGG 0.537666 8:-44738418 MsG0880044565.01.T01:CDS
ATTCCACTGACCACATCAGC+TGG 0.538255 8:-44737796 MsG0880044565.01.T01:CDS
TCCGCCGTTGGTTTCAAGGT+CGG 0.548175 8:-44739887 MsG0880044565.01.T01:CDS
GCCGTTGGTTTCAAGGTCGG+AGG 0.550906 8:-44739884 MsG0880044565.01.T01:CDS
TCGAATATCAAGCCTTGTGA+TGG 0.555943 8:+44738423 None:intergenic
TCGAGTTGGTCTCATAAAGA+AGG 0.557778 8:-44738404 MsG0880044565.01.T01:CDS
AATTGTGTTCTTCCTTACAT+TGG 0.558712 8:+44738069 None:intergenic
ATGGTCCCATTGCCTATGGA+TGG 0.561997 8:+44737760 None:intergenic
CTGGATTGCCTTCATACCCC+GGG 0.563744 8:+44737908 None:intergenic
ACGGTTCCATCCATAGGCAA+TGG 0.563965 8:-44737766 MsG0880044565.01.T01:CDS
CGTGCAAATGCCAGCTGATG+TGG 0.574978 8:+44737786 None:intergenic
CCATAGGCAATGGGACCATA+CGG 0.582538 8:-44737756 MsG0880044565.01.T01:CDS
GCAGCAAAAGCATCATCAAG+TGG 0.587775 8:-44738481 MsG0880044565.01.T01:CDS
CCACATCGTTGTTGGGAGTG+AGG 0.587850 8:+44739859 None:intergenic
TAAGACCTGACATCCGCCGT+TGG 0.611493 8:-44739899 MsG0880044565.01.T01:CDS
CTACTAGTAATGCTGGCTGT+CGG 0.615042 8:-44739966 None:intergenic
CTACGCTAAATCTAAAGGAG+AGG 0.625760 8:-44739745 MsG0880044565.01.T01:CDS
ACCTAAAACCAGCAACCATG+AGG 0.626255 8:-44738141 MsG0880044565.01.T01:CDS
GGGCATCAAATCCCAAGCAA+TGG 0.628535 8:-44738119 MsG0880044565.01.T01:CDS
CCTAAAACCAGCAACCATGA+GGG 0.630105 8:-44738140 MsG0880044565.01.T01:CDS
CCCAATCAACATCAAGAGTG+AGG 0.632440 8:-44739833 MsG0880044565.01.T01:CDS
GTCACATGCACACACATCGA+GGG 0.640948 8:-44739807 MsG0880044565.01.T01:CDS
ACCTCCGACCTTGAAACCAA+CGG 0.644683 8:+44739883 None:intergenic
ATGCCAGCTGATGTGGTCAG+TGG 0.646227 8:+44737793 None:intergenic
CTAAAACCAGCAACCATGAG+GGG 0.655884 8:-44738139 MsG0880044565.01.T01:CDS
AACCAGAAATTACCATCACA+AGG 0.669041 8:-44738435 MsG0880044565.01.T01:CDS
CCTCACTCCCAACAACGATG+TGG 0.685611 8:-44739859 MsG0880044565.01.T01:CDS
TATGTTGAAGAGATTGATGT+CGG 0.692037 8:-44738352 MsG0880044565.01.T01:CDS
AGTCACATGCACACACATCG+AGG 0.699610 8:-44739808 MsG0880044565.01.T01:CDS
CTTTAGGTATCACATTCCCG+GGG 0.717204 8:-44737924 MsG0880044565.01.T01:intron
GCACACGAATGAGAAGCGAG+AGG 0.738163 8:-44737833 MsG0880044565.01.T01:CDS
TCCGACCTTGAAACCAACGG+CGG 0.754296 8:+44739886 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAATCCT+TGG + Chr8:44738151-44738170 None:intergenic 10.0%
!! TCTTTATGAAAATTAAAAAA+GGG + Chr8:44738897-44738916 None:intergenic 10.0%
!! GTCTTTATGAAAATTAAAAA+AGG + Chr8:44738898-44738917 None:intergenic 15.0%
!!! GATTTTAAATCTTTTGTTTA+TGG + Chr8:44738384-44738403 None:intergenic 15.0%
!!! TATCATTTTAAATTACACAA+TGG - Chr8:44739702-44739721 MsG0880044565.01.T01:CDS 15.0%
!! AGTTTGACAAATATTGAAAA+GGG + Chr8:44738294-44738313 None:intergenic 20.0%
!! ATAAAAAAAACCCTACTTTA+AGG + Chr8:44738321-44738340 None:intergenic 20.0%
!! ATAACATTCAAAATTCTACA+AGG - Chr8:44738123-44738142 MsG0880044565.01.T01:CDS 20.0%
!! ATCTTTACAATCATAACATT+CGG + Chr8:44739746-44739765 None:intergenic 20.0%
!! TAGTTTGACAAATATTGAAA+AGG + Chr8:44738295-44738314 None:intergenic 20.0%
!!! AATTTCATCTTCTCTAATTT+TGG + Chr8:44738423-44738442 None:intergenic 20.0%
!!! GCAGATATTTTTTTTCATTT+TGG + Chr8:44738875-44738894 None:intergenic 20.0%
!!! TTAAAGTAGGGTTTTTTTTA+TGG - Chr8:44738320-44738339 MsG0880044565.01.T01:intron 20.0%
!!! TTGTAGAATTTTGAATGTTA+TGG + Chr8:44738124-44738143 None:intergenic 20.0%
! AAGAAAAACTTGTGAAAAAC+TGG + Chr8:44739035-44739054 None:intergenic 25.0%
! AGAAAAACTTGTGAAAAACT+GGG + Chr8:44739034-44739053 None:intergenic 25.0%
! GAGAAAAAATTGATGAACAA+CGG - Chr8:44738731-44738750 MsG0880044565.01.T01:intron 25.0%
!! AAGGTTGCTTATATTGATTA+GGG - Chr8:44739167-44739186 MsG0880044565.01.T01:intron 25.0%
!! TAAAGTTCACCTAATTTTCT+AGG - Chr8:44738263-44738282 MsG0880044565.01.T01:intron 25.0%
!!! CACAATTTTAATAGTGTTTC+TGG + Chr8:44739116-44739135 None:intergenic 25.0%
!!! GATTTCGTTTTTTTGCTTTT+TGG + Chr8:44738357-44738376 None:intergenic 25.0%
!!! TAGGGTTTTTTTTATGGTAT+TGG - Chr8:44738326-44738345 MsG0880044565.01.T01:intron 25.0%
!!! TTACTTTTTTCAGAATCGAA+AGG - Chr8:44739531-44739550 MsG0880044565.01.T01:intron 25.0%
!!! TTTTTAGAAAACGCTATTGT+TGG + Chr8:44738959-44738978 None:intergenic 25.0%
AAAAAATTGATGAACAACGG+TGG - Chr8:44738734-44738753 MsG0880044565.01.T01:intron 30.0%
AATGAATCAGACATGAACAT+TGG - Chr8:44738090-44738109 MsG0880044565.01.T01:CDS 30.0%
AATTGTGTTCTTCCTTACAT+TGG + Chr8:44739644-44739663 None:intergenic 30.0%
AGGTGAACTTTAACAGATTA+TGG + Chr8:44738255-44738274 None:intergenic 30.0%
ATGAAATGTAGGTTTGTGTT+TGG - Chr8:44739434-44739453 MsG0880044565.01.T01:intron 30.0%
CAAACTAAAGCCTTAAAGTA+GGG - Chr8:44738308-44738327 MsG0880044565.01.T01:intron 30.0%
GATTCATGAATGACACATAA+GGG - Chr8:44738205-44738224 MsG0880044565.01.T01:intron 30.0%
TATACCACTTGATGAAATGT+AGG - Chr8:44739423-44739442 MsG0880044565.01.T01:intron 30.0%
TATGTTGAAGAGATTGATGT+CGG - Chr8:44739358-44739377 MsG0880044565.01.T01:intron 30.0%
TCAAACTAAAGCCTTAAAGT+AGG - Chr8:44738307-44738326 MsG0880044565.01.T01:intron 30.0%
TTCTATAAGCGCTATTATTC+TGG + Chr8:44738998-44739017 None:intergenic 30.0%
TTTAGGAATGGCGTTTATAA+CGG + Chr8:44737940-44737959 None:intergenic 30.0%
! AAAATTGTGGTAGTGTTTCA+AGG - Chr8:44739148-44739167 MsG0880044565.01.T01:intron 30.0%
! ATTCATTTTCCCTTACAACT+AGG - Chr8:44739661-44739680 MsG0880044565.01.T01:intron 30.0%
! CAAGGTTGCTTATATTGATT+AGG - Chr8:44739166-44739185 MsG0880044565.01.T01:intron 30.0%
! TCGAAATCTCAATTGATTTC+TGG - Chr8:44738457-44738476 MsG0880044565.01.T01:CDS 30.0%
! TTCATTTTCCCTTACAACTA+GGG - Chr8:44739662-44739681 MsG0880044565.01.T01:intron 30.0%
! TTGAAACACTACCACAATTT+TGG + Chr8:44739149-44739168 None:intergenic 30.0%
!! TTTATGAGAAGTGCTATAAC+AGG - Chr8:44739060-44739079 MsG0880044565.01.T01:intron 30.0%
AACCAGAAATTACCATCACA+AGG - Chr8:44739275-44739294 MsG0880044565.01.T01:intron 35.0%
AATACGAGATGGTGATAAGA+CGG - Chr8:44738521-44738540 MsG0880044565.01.T01:intron 35.0%
AGGGTTTCACCTAGAAAATT+AGG + Chr8:44738275-44738294 None:intergenic 35.0%
CAAACCTACATTTCATCAAG+TGG + Chr8:44739430-44739449 None:intergenic 35.0%
GACATCTACGCTAAATCTAA+AGG - Chr8:44737960-44737979 MsG0880044565.01.T01:intron 35.0%
GATTTAGCGTAGATGTCTTT+AGG + Chr8:44737957-44737976 None:intergenic 35.0%
GCTATTGAAAGCCAAAATTG+TGG - Chr8:44739135-44739154 MsG0880044565.01.T01:intron 35.0%
GGATCCAAAGAAGAAAGTTT+GGG - Chr8:44739835-44739854 MsG0880044565.01.T01:CDS 35.0%
GGATTCATGAATGACACATA+AGG - Chr8:44738204-44738223 MsG0880044565.01.T01:intron 35.0%
TAGAAAACGCTATTGTTGGA+GGG + Chr8:44738955-44738974 None:intergenic 35.0%
TGGATCCAAAGAAGAAAGTT+TGG - Chr8:44739834-44739853 MsG0880044565.01.T01:CDS 35.0%
TTAGAAAACGCTATTGTTGG+AGG + Chr8:44738956-44738975 None:intergenic 35.0%
! GATTATGGTTTGTAGACATG+AGG + Chr8:44738240-44738259 None:intergenic 35.0%
! TCATTTTCCCTTACAACTAG+GGG - Chr8:44739663-44739682 MsG0880044565.01.T01:intron 35.0%
!! AGAAGCTTCACTTTTGGATA+AGG - Chr8:44738806-44738825 MsG0880044565.01.T01:intron 35.0%
!! GATTTCTGGTTTCATTCCAT+TGG - Chr8:44738471-44738490 MsG0880044565.01.T01:CDS 35.0%
ACAAGGCTTGATATTCGAGT+TGG - Chr8:44739292-44739311 MsG0880044565.01.T01:intron 40.0%
ACATACAGTGAATCTGCATC+AGG + Chr8:44739343-44739362 None:intergenic 40.0%
ACCTTTAGGTATCACATTCC+CGG - Chr8:44739784-44739803 MsG0880044565.01.T01:CDS 40.0%
AGAAAACGCTATTGTTGGAG+GGG + Chr8:44738954-44738973 None:intergenic 40.0%
ATACGAGATGGTGATAAGAC+GGG - Chr8:44738522-44738541 MsG0880044565.01.T01:intron 40.0%
ATCAAGTGGAGCCAAAAACA+AGG - Chr8:44739243-44739262 MsG0880044565.01.T01:intron 40.0%
CAAAATTCTACAAGGCTCCA+AGG - Chr8:44738131-44738150 MsG0880044565.01.T01:CDS 40.0%
CATTCATGAATCCTCGTGTA+AGG + Chr8:44738197-44738216 None:intergenic 40.0%
CTACGCTAAATCTAAAGGAG+AGG - Chr8:44737965-44737984 MsG0880044565.01.T01:intron 40.0%
GAGACGATGAGTTCGATTAA+GGG - Chr8:44738607-44738626 MsG0880044565.01.T01:intron 40.0%
GCTTTCACAAACGCTATGTT+TGG + Chr8:44738920-44738939 None:intergenic 40.0%
GTCTCCCAAACTTTCTTCTT+TGG + Chr8:44739842-44739861 None:intergenic 40.0%
TATGATTGCTGTGCACCTTT+AGG - Chr8:44739770-44739789 MsG0880044565.01.T01:CDS 40.0%
TCCTCACTCTTGATGTTGAT+TGG + Chr8:44737881-44737900 None:intergenic 40.0%
TGAGACGATGAGTTCGATTA+AGG - Chr8:44738606-44738625 MsG0880044565.01.T01:intron 40.0%
TTCTGGGTAAAGATGAAGGT+GGG - Chr8:44738545-44738564 MsG0880044565.01.T01:intron 40.0%
TTTGGATCCAAGAGTTCATC+TGG + Chr8:44739824-44739843 None:intergenic 40.0%
! AGCCTTGTGATGGTAATTTC+TGG + Chr8:44739280-44739299 None:intergenic 40.0%
! AGCGTAGATGTCTTTAGGAA+TGG + Chr8:44737952-44737971 None:intergenic 40.0%
! CATTTTCCCTTACAACTAGG+GGG - Chr8:44739664-44739683 MsG0880044565.01.T01:intron 40.0%
! CCTCACTCTTGATGTTGATT+GGG + Chr8:44737880-44737899 None:intergenic 40.0%
! TCGAATATCAAGCCTTGTGA+TGG + Chr8:44739290-44739309 None:intergenic 40.0%
! TTGTGACTGCACAGTTTGTT+TGG - Chr8:44737995-44738014 MsG0880044565.01.T01:intron 40.0%
! TTGTGAGAGAGAGTGAGTTT+TGG - Chr8:44738775-44738794 MsG0880044565.01.T01:intron 40.0%
!! ATTGGTTTGAAGAGTTCGAC+GGG - Chr8:44738489-44738508 MsG0880044565.01.T01:CDS 40.0%
!! CATTGGTTTGAAGAGTTCGA+CGG - Chr8:44738488-44738507 MsG0880044565.01.T01:CDS 40.0%
!! GCTTCACTTTTGGATAAGGA+AGG - Chr8:44738810-44738829 MsG0880044565.01.T01:intron 40.0%
!! TCGAGTTGGTCTCATAAAGA+AGG - Chr8:44739306-44739325 MsG0880044565.01.T01:intron 40.0%
AAGCAGCAAGAACCATTGCT+TGG + Chr8:44739606-44739625 None:intergenic 45.0%
ACCTAAAACCAGCAACCATG+AGG - Chr8:44739569-44739588 MsG0880044565.01.T01:intron 45.0%
ACGCTGATCACACCAATGTA+AGG - Chr8:44739629-44739648 MsG0880044565.01.T01:intron 45.0%
AGCAGCAAGAACCATTGCTT+GGG + Chr8:44739605-44739624 None:intergenic 45.0%
AGGCAATCCAGATGAACTCT+TGG - Chr8:44739814-44739833 MsG0880044565.01.T01:CDS 45.0%
ATCCAACCCCCTAGTTGTAA+GGG + Chr8:44739673-44739692 None:intergenic 45.0%
ATTTGCACGGTTCCATCCAT+AGG - Chr8:44739938-44739957 MsG0880044565.01.T01:CDS 45.0%
CCCAATCAACATCAAGAGTG+AGG - Chr8:44737877-44737896 MsG0880044565.01.T01:CDS 45.0%
CCTAAAACCAGCAACCATGA+GGG - Chr8:44739570-44739589 MsG0880044565.01.T01:intron 45.0%
CCTTTAGGTATCACATTCCC+GGG - Chr8:44739785-44739804 MsG0880044565.01.T01:CDS 45.0%
CGTCGAACTCTTCAAACCAA+TGG + Chr8:44738490-44738509 None:intergenic 45.0%
CTAAAACCAGCAACCATGAG+GGG - Chr8:44739571-44739590 MsG0880044565.01.T01:intron 45.0%
CTTGACAAGTCCACTGACAA+CGG + Chr8:44739401-44739420 None:intergenic 45.0%
CTTTAGGTATCACATTCCCG+GGG - Chr8:44739786-44739805 MsG0880044565.01.T01:CDS 45.0%
GAAAACGCTATTGTTGGAGG+GGG + Chr8:44738953-44738972 None:intergenic 45.0%
GATGGTGAATGTGATTCGTG+AGG - Chr8:44738650-44738669 MsG0880044565.01.T01:intron 45.0%
GGCTCTTCGTAAATACGAGA+TGG - Chr8:44738510-44738529 MsG0880044565.01.T01:intron 45.0%
TACATTGGTGTGATCAGCGT+TGG + Chr8:44739629-44739648 None:intergenic 45.0%
TGTCTTGTGAACCTTACACG+AGG - Chr8:44738183-44738202 MsG0880044565.01.T01:intron 45.0%
! ATGGTGATAAGACGGGTTCT+GGG - Chr8:44738529-44738548 MsG0880044565.01.T01:intron 45.0%
! GTTCTGGGTAAAGATGAAGG+TGG - Chr8:44738544-44738563 MsG0880044565.01.T01:intron 45.0%
!! GCAGCAAAAGCATCATCAAG+TGG - Chr8:44739229-44739248 MsG0880044565.01.T01:intron 45.0%
!! TGAGGTGAAAGGGTTGATGT+CGG - Chr8:44738709-44738728 MsG0880044565.01.T01:intron 45.0%
!!! CTTGATGATGCTTTTGCTGC+TGG + Chr8:44739229-44739248 None:intergenic 45.0%
!!! GAGAGAGAGTGAGTTTTGGA+CGG - Chr8:44738779-44738798 MsG0880044565.01.T01:intron 45.0%
!!! TTCAGCAGCAGCCTTGTTTT+TGG + Chr8:44739257-44739276 None:intergenic 45.0%
ACCTCCGACCTTGAAACCAA+CGG + Chr8:44737830-44737849 None:intergenic 50.0%
ACGGTTCCATCCATAGGCAA+TGG - Chr8:44739944-44739963 MsG0880044565.01.T01:CDS 50.0%
AGTCACATGCACACACATCG+AGG - Chr8:44737902-44737921 MsG0880044565.01.T01:CDS 50.0%
ATCACATTCCCGGGGTATGA+AGG - Chr8:44739794-44739813 MsG0880044565.01.T01:CDS 50.0%
ATGGTCCCATTGCCTATGGA+TGG + Chr8:44739953-44739972 None:intergenic 50.0%
ATTCCACTGACCACATCAGC+TGG - Chr8:44739914-44739933 MsG0880044565.01.T01:CDS 50.0%
CACATCAGCTGGCATTTGCA+CGG - Chr8:44739925-44739944 MsG0880044565.01.T01:CDS 50.0%
CAGACAAGAACCGTTGTCAG+TGG - Chr8:44739388-44739407 MsG0880044565.01.T01:intron 50.0%
CCATAGGCAATGGGACCATA+CGG - Chr8:44739954-44739973 MsG0880044565.01.T01:CDS 50.0%
CCCGGGAATGTGATACCTAA+AGG + Chr8:44739788-44739807 None:intergenic 50.0%
CGGTTCCATCCATAGGCAAT+GGG - Chr8:44739945-44739964 MsG0880044565.01.T01:CDS 50.0%
GAGGAGATGAGTGAGGTGAA+GGG - Chr8:44738669-44738688 MsG0880044565.01.T01:intron 50.0%
GAGTTCGATTAAGGGCTGTG+AGG - Chr8:44738615-44738634 MsG0880044565.01.T01:intron 50.0%
GATCCAACCCCCTAGTTGTA+AGG + Chr8:44739674-44739693 None:intergenic 50.0%
GATTCGTGAGGAGATGAGTG+AGG - Chr8:44738662-44738681 MsG0880044565.01.T01:intron 50.0%
GGGCATCAAATCCCAAGCAA+TGG - Chr8:44739591-44739610 MsG0880044565.01.T01:intron 50.0%
GTCACATGCACACACATCGA+GGG - Chr8:44737903-44737922 MsG0880044565.01.T01:CDS 50.0%
GTCGACAGAGTGAGGTGAAA+GGG - Chr8:44738699-44738718 MsG0880044565.01.T01:intron 50.0%
TCTGGATTGCCTTCATACCC+CGG + Chr8:44739806-44739825 None:intergenic 50.0%
TGAGGAGATGAGTGAGGTGA+AGG - Chr8:44738668-44738687 MsG0880044565.01.T01:intron 50.0%
TGAGTGAGGTGAAGGGTTGA+TGG - Chr8:44738676-44738695 MsG0880044565.01.T01:intron 50.0%
TGGGACTCCACATCGTTGTT+GGG + Chr8:44737861-44737880 None:intergenic 50.0%
TTCCCTTACAACTAGGGGGT+TGG - Chr8:44739668-44739687 MsG0880044565.01.T01:intron 50.0%
TTCGATTAAGGGCTGTGAGG+CGG - Chr8:44738618-44738637 MsG0880044565.01.T01:intron 50.0%
TTGGGACTCCACATCGTTGT+TGG + Chr8:44737862-44737881 None:intergenic 50.0%
TTGGGATTTGATGCCCCTCA+TGG + Chr8:44739587-44739606 None:intergenic 50.0%
! GAGTGAGGTGAAGGGTTGAT+GGG - Chr8:44738677-44738696 MsG0880044565.01.T01:intron 50.0%
! GATGGTGATAAGACGGGTTC+TGG - Chr8:44738528-44738547 MsG0880044565.01.T01:intron 50.0%
! GGGCTGTTGTTTGCAACAGA+TGG - Chr8:44739187-44739206 MsG0880044565.01.T01:intron 50.0%
! GGTGGGAGAAGCTTCACTTT+TGG - Chr8:44738800-44738819 MsG0880044565.01.T01:intron 50.0%
!! ACAACGGTGGAGAGAGTGTT+CGG - Chr8:44738747-44738766 MsG0880044565.01.T01:intron 50.0%
!! CGGGTTCTGGGTAAAGATGA+AGG - Chr8:44738541-44738560 MsG0880044565.01.T01:intron 50.0%
!!! AGAGAGTGAGTTTTGGACGG+TGG - Chr8:44738782-44738801 MsG0880044565.01.T01:intron 50.0%
!!! CCCTCATGGTTGCTGGTTTT+AGG + Chr8:44739573-44739592 None:intergenic 50.0%
!!! GAGAGTGAGTTTTGGACGGT+GGG - Chr8:44738783-44738802 MsG0880044565.01.T01:intron 50.0%
ATGCCAGCTGATGTGGTCAG+TGG + Chr8:44739920-44739939 None:intergenic 55.0%
CCACATCGTTGTTGGGAGTG+AGG + Chr8:44737854-44737873 None:intergenic 55.0%
CCGTATGGTCCCATTGCCTA+TGG + Chr8:44739957-44739976 None:intergenic 55.0%
CCTCACTCCCAACAACGATG+TGG - Chr8:44737851-44737870 MsG0880044565.01.T01:CDS 55.0%
CGTGCAAATGCCAGCTGATG+TGG + Chr8:44739927-44739946 None:intergenic 55.0%
CTGGATTGCCTTCATACCCC+GGG + Chr8:44739805-44739824 None:intergenic 55.0%
GCACACGAATGAGAAGCGAG+AGG - Chr8:44739877-44739896 MsG0880044565.01.T01:CDS 55.0%
GGTCGACAGAGTGAGGTGAA+AGG - Chr8:44738698-44738717 MsG0880044565.01.T01:intron 55.0%
TAAGACCTGACATCCGCCGT+TGG - Chr8:44737811-44737830 MsG0880044565.01.T01:CDS 55.0%
TCCGACCTTGAAACCAACGG+CGG + Chr8:44737827-44737846 None:intergenic 55.0%
TGAAACCAACGGCGGATGTC+AGG + Chr8:44737819-44737838 None:intergenic 55.0%
TTGATGCCCCTCATGGTTGC+TGG + Chr8:44739580-44739599 None:intergenic 55.0%
! GTGGGCTGTGATCTGTTCGA+CGG - Chr8:44738563-44738582 MsG0880044565.01.T01:intron 55.0%
! GTTGATGGGTCGACAGAGTG+AGG - Chr8:44738691-44738710 MsG0880044565.01.T01:intron 55.0%
!! GACATCCGCCGTTGGTTTCA+AGG - Chr8:44737819-44737838 MsG0880044565.01.T01:CDS 55.0%
!! TCCGCCGTTGGTTTCAAGGT+CGG - Chr8:44737823-44737842 MsG0880044565.01.T01:CDS 55.0%
GTGAGGCGGAGAGAGATGGA+TGG - Chr8:44738632-44738651 MsG0880044565.01.T01:intron 60.0%
!! GCCGTTGGTTTCAAGGTCGG+AGG - Chr8:44737826-44737845 MsG0880044565.01.T01:CDS 60.0%
GGCTGTGAGGCGGAGAGAGA+TGG - Chr8:44738628-44738647 MsG0880044565.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 44737753 44739979 44737753 ID=MsG0880044565.01;Name=MsG0880044565.01
Chr8 mRNA 44737753 44739979 44737753 ID=MsG0880044565.01.T01;Parent=MsG0880044565.01;Name=MsG0880044565.01.T01;_AED=0.50;_eAED=0.68;_QI=0|0|0|1|1|1|4|0|268
Chr8 exon 44739700 44739979 44739700 ID=MsG0880044565.01.T01:exon:8084;Parent=MsG0880044565.01.T01
Chr8 exon 44738330 44738526 44738330 ID=MsG0880044565.01.T01:exon:8083;Parent=MsG0880044565.01.T01
Chr8 exon 44738047 44738188 44738047 ID=MsG0880044565.01.T01:exon:8082;Parent=MsG0880044565.01.T01
Chr8 exon 44737753 44737940 44737753 ID=MsG0880044565.01.T01:exon:8081;Parent=MsG0880044565.01.T01
Chr8 CDS 44739700 44739979 44739700 ID=MsG0880044565.01.T01:cds;Parent=MsG0880044565.01.T01
Chr8 CDS 44738330 44738526 44738330 ID=MsG0880044565.01.T01:cds;Parent=MsG0880044565.01.T01
Chr8 CDS 44738047 44738188 44738047 ID=MsG0880044565.01.T01:cds;Parent=MsG0880044565.01.T01
Chr8 CDS 44737753 44737940 44737753 ID=MsG0880044565.01.T01:cds;Parent=MsG0880044565.01.T01
Gene Sequence

>MsG0880044565.01.T01

ATGCTGGCTGTCGGAGTTTTCTTTATAGTAATTTATTCTCGATTCATCACTCACAACTTAAGACCTGACATCCGCCGTTGGTTTCAAGGTCGGAGGTTCCTCACTCCCAACAACGATGTGGAGTCCCAATCAACATCAAGAGTGAGGAGAGTCACATGCACACACATCGAGGGCTTAGAAAAGTCCGTTATAAACGCCATTCCTAAAGACATCTACGCTAAATCTAAAGGAGAGGAATCACATTGTGACTGCACAGTTTGTTTGGATGAATTTGAAGAGAATGGAACTGAGAAGAAAAAACCAGCAGCAAAAGCATCATCAAGTGGAGCCAAAAACAAGGCTGCTGCTGAACCAGAAATTACCATCACAAGGCTTGATATTCGAGTTGGTCTCATAAAGAAGGCTGAAAAGCATCCTGATGCAGATTCACTGTATGTTGAAGAGATTGATGTCGGTGAAGAACAGACAAGAACCGTTAATCGAAAGGTCTGTGTTCTTTGCAACCTAAAACCAGCAACCATGAGGGGCATCAAATCCCAAGCAATGGTTCTTGCTGCTTCCAACGCTGATCACACCAATGTAAGGAAGAACACAATTCATTTTCCCTTACAACTAGGGGGTATCACATTCCCGGGGTATGAAGGCAATCCAGATGAACTCTTGGATCCAAAGAAGAAAGTTTGGGAGACATTTCAAGTCGATCTGCACACGAATGAGAAGCGAGAGGCATGCTACAAAGACATTCCACTGACCACATCAGCTGGCATTTGCACGGTTCCATCCATAGGCAATGGGACCATACGGTAG

Protein sequence

>MsG0880044565.01.T01

MLAVGVFFIVIYSRFITHNLRPDIRRWFQGRRFLTPNNDVESQSTSRVRRVTCTHIEGLEKSVINAIPKDIYAKSKGEESHCDCTVCLDEFEENGTEKKKPAAKASSSGAKNKAAAEPEITITRLDIRVGLIKKAEKHPDADSLYVEEIDVGEEQTRTVNRKVCVLCNLKPATMRGIKSQAMVLAASNADHTNVRKNTIHFPLQLGGITFPGYEGNPDELLDPKKKVWETFQVDLHTNEKREACYKDIPLTTSAGICTVPSIGNGTIR*