Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017891.01.T01 | XP_003603838.1 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017891.01.T01 | Q39227 | 86.479 | 355 | 48 | 0 | 1 | 355 | 1 | 355 | 0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017891.01.T01 | G7J5X1 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048817.01 | MsG0380017891.01 | -0.807198 | 5.681537e-50 | 3.144889e-47 |
| MsG0080048849.01 | MsG0380017891.01 | -0.816339 | 5.820560e-52 | 4.113371e-49 |
| MsG0080049069.01 | MsG0380017891.01 | -0.871025 | 9.353395e-67 | 3.716253e-63 |
| MsG0180000544.01 | MsG0380017891.01 | 0.888426 | 5.967211e-73 | 4.620411e-69 |
| MsG0180000546.01 | MsG0380017891.01 | -0.813854 | 2.073565e-51 | 1.369421e-48 |
| MsG0180003815.01 | MsG0380017891.01 | -0.822461 | 2.340270e-53 | 1.960069e-50 |
| MsG0180003952.01 | MsG0380017891.01 | -0.813157 | 2.950337e-51 | 1.911857e-48 |
| MsG0180004025.01 | MsG0380017891.01 | -0.810369 | 1.192844e-50 | 7.177155e-48 |
| MsG0180004750.01 | MsG0380017891.01 | -0.823784 | 1.149335e-53 | 9.994597e-51 |
| MsG0180005193.01 | MsG0380017891.01 | -0.817854 | 2.657579e-52 | 1.957599e-49 |
| MsG0180005881.01 | MsG0380017891.01 | 0.800277 | 1.554515e-48 | 7.208693e-46 |
| MsG0180006034.01 | MsG0380017891.01 | 0.812143 | 4.916711e-51 | 3.101388e-48 |
| MsG0180006096.01 | MsG0380017891.01 | -0.803225 | 3.858711e-49 | 1.928479e-46 |
| MsG0180006144.01 | MsG0380017891.01 | -0.813073 | 3.078817e-51 | 1.990598e-48 |
| MsG0180006220.01 | MsG0380017891.01 | -0.810010 | 1.425802e-50 | 8.499035e-48 |
| MsG0280006306.01 | MsG0380017891.01 | 0.858295 | 9.088940e-63 | 2.308708e-59 |
| MsG0280006418.01 | MsG0380017891.01 | 0.814184 | 1.753604e-51 | 1.168568e-48 |
| MsG0280010604.01 | MsG0380017891.01 | 0.810503 | 1.115791e-50 | 6.737449e-48 |
| MsG0280011059.01 | MsG0380017891.01 | 0.835152 | 1.981365e-56 | 2.402133e-53 |
| MsG0380011895.01 | MsG0380017891.01 | -0.827127 | 1.857312e-54 | 1.776761e-51 |
| MsG0380012005.01 | MsG0380017891.01 | -0.806252 | 9.001829e-50 | 4.863038e-47 |
| MsG0380013467.01 | MsG0380017891.01 | -0.857016 | 2.174211e-62 | 5.290014e-59 |
| MsG0380013853.01 | MsG0380017891.01 | -0.806852 | 6.725815e-50 | 3.689658e-47 |
| MsG0380014225.01 | MsG0380017891.01 | 0.813947 | 1.977764e-51 | 1.309449e-48 |
| MsG0380015166.01 | MsG0380017891.01 | -0.800506 | 1.396074e-48 | 6.511565e-46 |
| MsG0380015533.01 | MsG0380017891.01 | -0.805513 | 1.287156e-49 | 6.822679e-47 |
| MsG0380015778.01 | MsG0380017891.01 | -0.807828 | 4.176466e-50 | 2.349927e-47 |
| MsG0380015849.01 | MsG0380017891.01 | 0.815063 | 1.120238e-51 | 7.644300e-49 |
| MsG0380016191.01 | MsG0380017891.01 | 0.835529 | 1.591615e-56 | 1.951509e-53 |
| MsG0380016337.01 | MsG0380017891.01 | 0.821561 | 3.781097e-53 | 3.086820e-50 |
| MsG0380016547.01 | MsG0380017891.01 | 0.832900 | 7.258499e-56 | 8.225570e-53 |
| MsG0380016828.01 | MsG0380017891.01 | 0.811670 | 6.234677e-51 | 3.882668e-48 |
| MsG0380016883.01 | MsG0380017891.01 | -0.802316 | 5.945304e-49 | 2.903424e-46 |
| MsG0380017085.01 | MsG0380017891.01 | -0.828884 | 7.014261e-55 | 7.062135e-52 |
| MsG0380017776.01 | MsG0380017891.01 | 0.839365 | 1.655146e-57 | 2.280609e-54 |
| MsG0380017878.01 | MsG0380017891.01 | 0.856160 | 3.881652e-62 | 9.178397e-59 |
| MsG0380017891.01 | MsG0480018214.01 | -0.800666 | 1.295093e-48 | 6.065290e-46 |
| MsG0380017891.01 | MsG0480018911.01 | -0.814750 | 1.314277e-51 | 8.893022e-49 |
| MsG0380017891.01 | MsG0480019843.01 | 0.819872 | 9.242393e-53 | 7.199095e-50 |
| MsG0380017891.01 | MsG0480020025.01 | -0.830677 | 2.566387e-55 | 2.723048e-52 |
| MsG0380017891.01 | MsG0480021201.01 | -0.809968 | 1.455488e-50 | 8.666277e-48 |
| MsG0380017891.01 | MsG0480021776.01 | 0.872402 | 3.269650e-67 | 1.366463e-63 |
| MsG0380017891.01 | MsG0480021959.01 | -0.844073 | 9.474776e-59 | 1.512285e-55 |
| MsG0380017891.01 | MsG0480022739.01 | 0.817745 | 2.811475e-52 | 2.064837e-49 |
| MsG0380017891.01 | MsG0480022781.01 | 0.814123 | 1.808329e-51 | 1.203033e-48 |
| MsG0380017891.01 | MsG0480022872.01 | 0.823304 | 1.488265e-53 | 1.276578e-50 |
| MsG0380017891.01 | MsG0480022956.01 | 0.813706 | 2.234470e-51 | 1.469888e-48 |
| MsG0380017891.01 | MsG0480023162.01 | -0.808846 | 2.534427e-50 | 1.464628e-47 |
| MsG0380017891.01 | MsG0480023448.01 | -0.805621 | 1.221753e-49 | 6.494205e-47 |
| MsG0380017891.01 | MsG0480023652.01 | -0.819529 | 1.107340e-52 | 8.543401e-50 |
| MsG0380017891.01 | MsG0480023660.01 | -0.824156 | 9.403089e-54 | 8.262155e-51 |
| MsG0380017891.01 | MsG0480023867.01 | -0.804352 | 2.250700e-49 | 1.157929e-46 |
| MsG0380017891.01 | MsG0580024495.01 | -0.803039 | 4.217047e-49 | 2.097507e-46 |
| MsG0380017891.01 | MsG0580025182.01 | 0.811078 | 8.381631e-51 | 5.139196e-48 |
| MsG0380017891.01 | MsG0580025369.01 | 0.825282 | 5.103830e-54 | 4.631514e-51 |
| MsG0380017891.01 | MsG0580025467.01 | -0.812864 | 3.420392e-51 | 2.199141e-48 |
| MsG0380017891.01 | MsG0580025670.01 | 0.826760 | 2.272486e-54 | 2.150801e-51 |
| MsG0380017891.01 | MsG0580028630.01 | -0.803447 | 3.470245e-49 | 1.744305e-46 |
| MsG0380017891.01 | MsG0580029514.01 | 0.836696 | 8.042265e-57 | 1.021406e-53 |
| MsG0380017891.01 | MsG0580029999.01 | 0.809084 | 2.253541e-50 | 1.310685e-47 |
| MsG0380017891.01 | MsG0680030636.01 | -0.819922 | 9.006436e-53 | 7.025227e-50 |
| MsG0380017891.01 | MsG0680032473.01 | 0.836856 | 7.321177e-57 | 9.342947e-54 |
| MsG0380017891.01 | MsG0680032827.01 | -0.808425 | 3.116510e-50 | 1.781387e-47 |
| MsG0380017891.01 | MsG0680033006.01 | -0.818853 | 1.578093e-52 | 1.194942e-49 |
| MsG0380017891.01 | MsG0680035311.01 | 0.832156 | 1.109991e-55 | 1.230286e-52 |
| MsG0380017891.01 | MsG0680035877.01 | -0.800666 | 1.295093e-48 | 6.065290e-46 |
| MsG0380017891.01 | MsG0780035960.01 | -0.810791 | 9.669820e-51 | 5.884094e-48 |
| MsG0380017891.01 | MsG0780036069.01 | -0.803942 | 2.740031e-49 | 1.394970e-46 |
| MsG0380017891.01 | MsG0780036978.01 | -0.810049 | 1.398148e-50 | 8.342561e-48 |
| MsG0380017891.01 | MsG0780037082.01 | -0.840031 | 1.110541e-57 | 1.562286e-54 |
| MsG0380017891.01 | MsG0780038309.01 | 0.802636 | 5.107911e-49 | 2.514703e-46 |
| MsG0380017891.01 | MsG0780039143.01 | -0.823798 | 1.140622e-53 | 9.922499e-51 |
| MsG0380017891.01 | MsG0780040295.01 | 0.819095 | 1.390010e-52 | 1.059526e-49 |
| MsG0380017891.01 | MsG0780040566.01 | 0.810406 | 1.170907e-50 | 7.051830e-48 |
| MsG0380017891.01 | MsG0780040596.01 | -0.816644 | 4.972342e-52 | 3.543179e-49 |
| MsG0380017891.01 | MsG0780040858.01 | -0.809872 | 1.526198e-50 | 9.064412e-48 |
| MsG0380017891.01 | MsG0780041117.01 | 0.813597 | 2.362058e-51 | 1.549218e-48 |
| MsG0380017891.01 | MsG0780041470.01 | 0.826529 | 2.581042e-54 | 2.426716e-51 |
| MsG0380017891.01 | MsG0780041507.01 | -0.802717 | 4.913058e-49 | 2.423914e-46 |
| MsG0380017891.01 | MsG0780041747.01 | -0.825488 | 4.562266e-54 | 4.164244e-51 |
| MsG0380017891.01 | MsG0880042134.01 | -0.823405 | 1.409651e-53 | 1.212519e-50 |
| MsG0380017891.01 | MsG0880042987.01 | 0.821878 | 3.195270e-53 | 2.632112e-50 |
| MsG0380017891.01 | MsG0880043829.01 | -0.820038 | 8.469182e-53 | 6.627876e-50 |
| MsG0380017891.01 | MsG0880044101.01 | -0.802339 | 5.878922e-49 | 2.872636e-46 |
| MsG0380017891.01 | MsG0880044611.01 | 0.804763 | 1.848117e-49 | 9.609455e-47 |
| MsG0380017891.01 | MsG0880045010.01 | 0.802311 | 5.959521e-49 | 2.909985e-46 |
| MsG0380017891.01 | MsG0880045555.01 | 0.821368 | 4.189844e-53 | 3.402031e-50 |
| MsG0380017891.01 | MsG0880045605.01 | 0.805049 | 1.610555e-49 | 8.435849e-47 |
| MsG0380017891.01 | MsG0880046825.01 | 0.823405 | 1.409735e-53 | 1.212579e-50 |
| MsG0380017891.01 | MsG0880046963.01 | 0.824293 | 8.730046e-54 | 7.700095e-51 |
| MsG0380017891.01 | MsG0880047052.01 | -0.804211 | 2.408781e-49 | 1.234709e-46 |
| MsG0380017891.01 | MsG0880047763.01 | -0.829880 | 4.017835e-55 | 4.165926e-52 |
| MsG0280007058.01 | MsG0380017891.01 | 0.821792 | 3.344480e-53 | 2.748234e-50 |
| MsG0280007062.01 | MsG0380017891.01 | -0.806263 | 8.953124e-50 | 4.838118e-47 |
| MsG0280007193.01 | MsG0380017891.01 | 0.854647 | 1.070606e-61 | 2.407641e-58 |
| MsG0280008660.01 | MsG0380017891.01 | 0.815162 | 1.064677e-51 | 7.284659e-49 |
| MsG0280008928.01 | MsG0380017891.01 | -0.857668 | 1.395804e-62 | 3.471864e-59 |
| MsG0280008929.01 | MsG0380017891.01 | -0.833573 | 4.935413e-56 | 5.706445e-53 |
| MsG0280009685.01 | MsG0380017891.01 | -0.800711 | 1.267951e-48 | 5.944660e-46 |
| MsG0280010288.01 | MsG0380017891.01 | -0.815212 | 1.037592e-51 | 7.109013e-49 |
| MsG0280010434.01 | MsG0380017891.01 | -0.814550 | 1.455187e-51 | 9.793968e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380017891.01 | MsG0380012835.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017891.01.T01 | MTR_3g114780 | 98.889 | 360 | 4 | 0 | 1 | 360 | 1 | 360 | 0.0 | 743 |
| MsG0380017891.01.T01 | MTR_3g032530 | 41.369 | 336 | 179 | 4 | 39 | 359 | 8 | 340 | 1.59e-87 | 268 |
| MsG0380017891.01.T01 | MTR_3g032530 | 43.144 | 299 | 154 | 3 | 74 | 359 | 2 | 297 | 1.92e-84 | 258 |
| MsG0380017891.01.T01 | MTR_1g014690 | 27.155 | 232 | 145 | 5 | 77 | 290 | 72 | 297 | 3.80e-15 | 76.3 |
| MsG0380017891.01.T01 | MTR_1g014690 | 28.743 | 167 | 115 | 2 | 127 | 290 | 77 | 242 | 3.20e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017891.01.T01 | AT1G20330 | 86.479 | 355 | 48 | 0 | 1 | 355 | 1 | 355 | 0.0 | 664 |
| MsG0380017891.01.T01 | AT1G76090 | 81.461 | 356 | 66 | 0 | 1 | 356 | 1 | 356 | 0.0 | 642 |
| MsG0380017891.01.T01 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.33e-87 | 266 |
| MsG0380017891.01.T01 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.33e-87 | 266 |
| MsG0380017891.01.T01 | AT1G64970 | 23.607 | 305 | 204 | 7 | 66 | 354 | 56 | 347 | 1.44e-14 | 74.3 |
| MsG0380017891.01.T01 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 274 | 378 | 7.56e-11 | 63.9 |
| MsG0380017891.01.T01 | AT1G73600 | 27.879 | 165 | 110 | 3 | 116 | 280 | 288 | 443 | 9.74e-11 | 63.5 |
Find 94 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGTTTCGATCTCTTT+TGG | 0.211288 | 3:+101928204 | None:intergenic |
| CGCGCCGTCGAAGCTGTTAT+TGG | 0.221898 | 3:+101927822 | None:intergenic |
| AAATGGGTCGGATTGCTTAT+TGG | 0.263397 | 3:-101927504 | MsG0380017891.01.T01:CDS |
| GAAAGAGGTGATGCGCTTCC+TGG | 0.288174 | 3:-101927637 | MsG0380017891.01.T01:CDS |
| CTCTTTACGTTTCATATGAA+TGG | 0.298194 | 3:-101927720 | MsG0380017891.01.T01:CDS |
| ATGGTGGACCCGTTTGAAAA+TGG | 0.310972 | 3:-101927521 | MsG0380017891.01.T01:CDS |
| TAAAATGTATCGACGAAATC+TGG | 0.322018 | 3:+101928174 | None:intergenic |
| CGATATTTACGAATGGGGTT+GGG | 0.323081 | 3:-101928139 | MsG0380017891.01.T01:CDS |
| TGAACATCAACGGTTCCTTT+AGG | 0.334532 | 3:+101927436 | None:intergenic |
| TAAGTTGAATTATCTTCTTT+TGG | 0.351483 | 3:+101927325 | None:intergenic |
| GGCATCACGGTCAGATTTAC+CGG | 0.359336 | 3:+101928086 | None:intergenic |
| CATTCACGCGCTAACGTTGT+TGG | 0.362166 | 3:-101927955 | MsG0380017891.01.T01:CDS |
| ACAAAACCGTTACCACAATA+TGG | 0.374465 | 3:+101927476 | None:intergenic |
| GATCTACCGCCATTTCTTCA+TGG | 0.377423 | 3:+101928055 | None:intergenic |
| GGTTGGGTTTGAGGTTGTTA+AGG | 0.385526 | 3:-101927575 | MsG0380017891.01.T01:CDS |
| TCCTCGCCGGCGGTCTCTAC+TGG | 0.391323 | 3:-101928350 | MsG0380017891.01.T01:CDS |
| GGTTGTTAAGGAACGGGATC+TGG | 0.398392 | 3:-101927563 | MsG0380017891.01.T01:CDS |
| GGCTAAGAAGGTTGGGTTTG+AGG | 0.408359 | 3:-101927584 | MsG0380017891.01.T01:CDS |
| CACGCGCCTCCATGAAGAAA+TGG | 0.416183 | 3:-101928064 | MsG0380017891.01.T01:CDS |
| CCAACCCCATTCGTAAATAT+CGG | 0.433176 | 3:+101928140 | None:intergenic |
| TACTGGTTCGTCTGCGTCCT+CGG | 0.437567 | 3:-101928333 | MsG0380017891.01.T01:CDS |
| GATCTAATCGAGGTTAAATC+TGG | 0.437762 | 3:-101928036 | MsG0380017891.01.T01:CDS |
| CGTTACCGATATTTACGAAT+GGG | 0.442701 | 3:-101928145 | MsG0380017891.01.T01:CDS |
| CCGATATTTACGAATGGGGT+TGG | 0.443208 | 3:-101928140 | MsG0380017891.01.T01:CDS |
| GTTTGAGGTTGTTAAGGAAC+GGG | 0.444084 | 3:-101927569 | MsG0380017891.01.T01:CDS |
| TGGTGGACCCGTTTGAAAAT+GGG | 0.448669 | 3:-101927520 | MsG0380017891.01.T01:CDS |
| TCTTTACGTTTCATATGAAT+GGG | 0.452066 | 3:-101927719 | MsG0380017891.01.T01:CDS |
| AGCTACAAATTTCTCAGTTG+TGG | 0.453410 | 3:+101927696 | None:intergenic |
| GATATTTACGAATGGGGTTG+GGG | 0.457811 | 3:-101928138 | MsG0380017891.01.T01:CDS |
| GCGCCGTCGAAGCTGTTATT+GGG | 0.458017 | 3:+101927823 | None:intergenic |
| CTCCGGTGCAGAAGAGAGAA+AGG | 0.458720 | 3:+101928376 | None:intergenic |
| GAACATGTTGAGATTATTCA+AGG | 0.459102 | 3:-101927664 | MsG0380017891.01.T01:CDS |
| CTGAAGCGGCTAAGAAGGTT+GGG | 0.459708 | 3:-101927591 | MsG0380017891.01.T01:CDS |
| GCGTAAACTTCTTCAAGATT+AGG | 0.459835 | 3:+101927772 | None:intergenic |
| AGTATTTATCGTAACTGTCT+TGG | 0.460133 | 3:+101928244 | None:intergenic |
| ACCGCCGGCGAGGAGGGCTC+CGG | 0.486822 | 3:+101928359 | None:intergenic |
| ATTATTCAAGGGATTGAAAG+AGG | 0.488965 | 3:-101927652 | MsG0380017891.01.T01:CDS |
| CTCAGCCACCGTCTCATCCA+TGG | 0.489785 | 3:-101927540 | MsG0380017891.01.T01:CDS |
| AAACGCGCCACCGATCTATC+CGG | 0.493820 | 3:-101928291 | MsG0380017891.01.T01:CDS |
| GATGTAGGTTGCGGTGTAGG+TGG | 0.497285 | 3:-101928000 | MsG0380017891.01.T01:CDS |
| ACCCTTTCTCTCTTCTGCAC+CGG | 0.497665 | 3:-101928378 | MsG0380017891.01.T01:CDS |
| AAAGAGGTGATGCGCTTCCT+GGG | 0.500216 | 3:-101927636 | MsG0380017891.01.T01:CDS |
| TCTCTATGCGATGTTGTTTG+TGG | 0.500320 | 3:-101927868 | MsG0380017891.01.T01:CDS |
| CTCGGCCCTGCCGAACGAAA+AGG | 0.505038 | 3:-101928315 | MsG0380017891.01.T01:CDS |
| GCTGAAGCGGCTAAGAAGGT+TGG | 0.506568 | 3:-101927592 | MsG0380017891.01.T01:CDS |
| ATGAGACGCGATAGCTCTCA+TGG | 0.507512 | 3:+101927975 | None:intergenic |
| TATAGCTGAAGCGGCTAAGA+AGG | 0.514512 | 3:-101927596 | MsG0380017891.01.T01:CDS |
| GGTGATAAAATTCTCGATGT+AGG | 0.518771 | 3:-101928015 | MsG0380017891.01.T01:CDS |
| CTCGATGTAGGTTGCGGTGT+AGG | 0.521229 | 3:-101928003 | MsG0380017891.01.T01:CDS |
| AAGACAGTTACGATAAATAC+TGG | 0.522518 | 3:-101928242 | MsG0380017891.01.T01:CDS |
| ATGTAGGTTGCGGTGTAGGT+GGG | 0.523749 | 3:-101927999 | MsG0380017891.01.T01:CDS |
| TTCAGCGGAAATTGAACCGC+CGG | 0.527269 | 3:+101928272 | None:intergenic |
| GCGTAACCATATTGTGGTAA+CGG | 0.528986 | 3:-101927482 | MsG0380017891.01.T01:CDS |
| GCTTTGGGAATTGCACCTAA+AGG | 0.533645 | 3:-101927451 | MsG0380017891.01.T01:CDS |
| TCGAAGCTGTTATTGGGAAA+CGG | 0.537800 | 3:+101927829 | None:intergenic |
| GGTTTGAGGTTGTTAAGGAA+CGG | 0.540682 | 3:-101927570 | MsG0380017891.01.T01:CDS |
| TCAGCGTAGGTTCTAAGCCC+AGG | 0.541956 | 3:+101927619 | None:intergenic |
| TCAGATTTACCGGGAATAGC+GGG | 0.543231 | 3:+101928096 | None:intergenic |
| GTAGAGACCGCCGGCGAGGA+GGG | 0.547296 | 3:+101928353 | None:intergenic |
| CTGCAGAGAATCATGTGCAT+AGG | 0.550727 | 3:+101927352 | None:intergenic |
| CTACGCTGATATAGCTGAAG+CGG | 0.552632 | 3:-101927605 | MsG0380017891.01.T01:CDS |
| AATTGAACCGCCGGATAGAT+CGG | 0.553673 | 3:+101928281 | None:intergenic |
| ACCGGAGCCCTCCTCGCCGG+CGG | 0.554746 | 3:-101928360 | MsG0380017891.01.T01:CDS |
| GTCAGATTTACCGGGAATAG+CGG | 0.555781 | 3:+101928095 | None:intergenic |
| TGCACCGGAGCCCTCCTCGC+CGG | 0.559092 | 3:-101928363 | MsG0380017891.01.T01:CDS |
| CATGGAGGCGCGTGGCATCA+CGG | 0.566865 | 3:+101928073 | None:intergenic |
| AAAATTCTCGATGTAGGTTG+CGG | 0.567893 | 3:-101928009 | MsG0380017891.01.T01:CDS |
| AAGATTAGGCGCGTGGCACG+TGG | 0.572185 | 3:+101927786 | None:intergenic |
| TCGTTACCGATATTTACGAA+TGG | 0.576012 | 3:-101928146 | MsG0380017891.01.T01:CDS |
| CATTTCTTCATGGAGGCGCG+TGG | 0.589569 | 3:+101928065 | None:intergenic |
| CGGGTCCACCATGGATGAGA+CGG | 0.590737 | 3:+101927532 | None:intergenic |
| TTTCCCAATAACAGCTTCGA+CGG | 0.594298 | 3:-101927826 | MsG0380017891.01.T01:CDS |
| TTATTGGCGTAACCATATTG+TGG | 0.596355 | 3:-101927488 | MsG0380017891.01.T01:CDS |
| CGCTTCAGCTATATCAGCGT+AGG | 0.600324 | 3:+101927606 | None:intergenic |
| TATGAAACGTAAAGAGCACC+AGG | 0.603847 | 3:+101927727 | None:intergenic |
| GACGAACCAGTAGAGACCGC+CGG | 0.606820 | 3:+101928344 | None:intergenic |
| GTTACCGATATTTACGAATG+GGG | 0.610865 | 3:-101928144 | MsG0380017891.01.T01:CDS |
| AGTAGAGACCGCCGGCGAGG+AGG | 0.613500 | 3:+101928352 | None:intergenic |
| CTTCTTCAAGATTAGGCGCG+TGG | 0.615214 | 3:+101927779 | None:intergenic |
| AACATGTTGAGATTATTCAA+GGG | 0.615784 | 3:-101927663 | MsG0380017891.01.T01:CDS |
| TCCGGTGCAGAAGAGAGAAA+GGG | 0.624782 | 3:+101928377 | None:intergenic |
| GGACCCGTTTGAAAATGGGT+CGG | 0.636433 | 3:-101927516 | MsG0380017891.01.T01:CDS |
| ACCAGTAGAGACCGCCGGCG+AGG | 0.640194 | 3:+101928349 | None:intergenic |
| CAGCATCTCATGAACATCAA+CGG | 0.644005 | 3:+101927426 | None:intergenic |
| GCATCACGGTCAGATTTACC+GGG | 0.650834 | 3:+101928087 | None:intergenic |
| CGCGCCACCGATCTATCCGG+CGG | 0.666165 | 3:-101928288 | MsG0380017891.01.T01:CDS |
| AGCCACCGTCTCATCCATGG+TGG | 0.669559 | 3:-101927537 | MsG0380017891.01.T01:CDS |
| TGAGACGCGATAGCTCTCAT+GGG | 0.676213 | 3:+101927976 | None:intergenic |
| GTCCACCATGGATGAGACGG+TGG | 0.682031 | 3:+101927535 | None:intergenic |
| CTACCGCCATTTCTTCATGG+AGG | 0.686710 | 3:+101928058 | None:intergenic |
| TGAACCGCCGGATAGATCGG+TGG | 0.706847 | 3:+101928284 | None:intergenic |
| GCGCCTCCATGAAGAAATGG+CGG | 0.711344 | 3:-101928061 | MsG0380017891.01.T01:CDS |
| GAAATCTGGAACTTTCTCAG+CGG | 0.713889 | 3:+101928188 | None:intergenic |
| AATGGCGGTAGATCTAATCG+AGG | 0.736089 | 3:-101928046 | MsG0380017891.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTGAATTATCTTCTTT+TGG | + | Chr3:101928386-101928405 | None:intergenic | 20.0% |
| ! | AAATTACACAACAAAAAAGC+TGG | - | Chr3:101927810-101927829 | MsG0380017891.01.T01:CDS | 25.0% |
| ! | AACATGTTGAGATTATTCAA+GGG | - | Chr3:101928045-101928064 | MsG0380017891.01.T01:CDS | 25.0% |
| ! | TCTTTACGTTTCATATGAAT+GGG | - | Chr3:101927989-101928008 | MsG0380017891.01.T01:CDS | 25.0% |
| !! | AAGTTTACGCTGAAATTTTT+AGG | - | Chr3:101927949-101927968 | MsG0380017891.01.T01:CDS | 25.0% |
| !! | AGTTTACGCTGAAATTTTTA+GGG | - | Chr3:101927950-101927969 | MsG0380017891.01.T01:CDS | 25.0% |
| AAGACAGTTACGATAAATAC+TGG | - | Chr3:101927466-101927485 | MsG0380017891.01.T01:CDS | 30.0% | |
| AGTATTTATCGTAACTGTCT+TGG | + | Chr3:101927467-101927486 | None:intergenic | 30.0% | |
| ATTATTCAAGGGATTGAAAG+AGG | - | Chr3:101928056-101928075 | MsG0380017891.01.T01:CDS | 30.0% | |
| CTCTTTACGTTTCATATGAA+TGG | - | Chr3:101927988-101928007 | MsG0380017891.01.T01:CDS | 30.0% | |
| GAACATGTTGAGATTATTCA+AGG | - | Chr3:101928044-101928063 | MsG0380017891.01.T01:CDS | 30.0% | |
| ! | TAAAATGTATCGACGAAATC+TGG | + | Chr3:101927537-101927556 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGGTTTTGAAACC+TGG | - | Chr3:101927963-101927982 | MsG0380017891.01.T01:CDS | 30.0% |
| AAAATTCTCGATGTAGGTTG+CGG | - | Chr3:101927699-101927718 | MsG0380017891.01.T01:CDS | 35.0% | |
| ACAAAACCGTTACCACAATA+TGG | + | Chr3:101928235-101928254 | None:intergenic | 35.0% | |
| AGCTACAAATTTCTCAGTTG+TGG | + | Chr3:101928015-101928034 | None:intergenic | 35.0% | |
| CGTTACCGATATTTACGAAT+GGG | - | Chr3:101927563-101927582 | MsG0380017891.01.T01:CDS | 35.0% | |
| GATCTAATCGAGGTTAAATC+TGG | - | Chr3:101927672-101927691 | MsG0380017891.01.T01:CDS | 35.0% | |
| GCGTAAACTTCTTCAAGATT+AGG | + | Chr3:101927939-101927958 | None:intergenic | 35.0% | |
| GGTGATAAAATTCTCGATGT+AGG | - | Chr3:101927693-101927712 | MsG0380017891.01.T01:CDS | 35.0% | |
| GTTACCGATATTTACGAATG+GGG | - | Chr3:101927564-101927583 | MsG0380017891.01.T01:CDS | 35.0% | |
| TCGTTACCGATATTTACGAA+TGG | - | Chr3:101927562-101927581 | MsG0380017891.01.T01:CDS | 35.0% | |
| TTATTGGCGTAACCATATTG+TGG | - | Chr3:101928220-101928239 | MsG0380017891.01.T01:CDS | 35.0% | |
| AAATGGGTCGGATTGCTTAT+TGG | - | Chr3:101928204-101928223 | MsG0380017891.01.T01:CDS | 40.0% | |
| CAGCATCTCATGAACATCAA+CGG | + | Chr3:101928285-101928304 | None:intergenic | 40.0% | |
| CCAACCCCATTCGTAAATAT+CGG | + | Chr3:101927571-101927590 | None:intergenic | 40.0% | |
| CGATATTTACGAATGGGGTT+GGG | - | Chr3:101927569-101927588 | MsG0380017891.01.T01:CDS | 40.0% | |
| GATATTTACGAATGGGGTTG+GGG | - | Chr3:101927570-101927589 | MsG0380017891.01.T01:CDS | 40.0% | |
| GCGTAACCATATTGTGGTAA+CGG | - | Chr3:101928226-101928245 | MsG0380017891.01.T01:CDS | 40.0% | |
| TCGAAGCTGTTATTGGGAAA+CGG | + | Chr3:101927882-101927901 | None:intergenic | 40.0% | |
| TGAACATCAACGGTTCCTTT+AGG | + | Chr3:101928275-101928294 | None:intergenic | 40.0% | |
| TTTCCCAATAACAGCTTCGA+CGG | - | Chr3:101927882-101927901 | MsG0380017891.01.T01:CDS | 40.0% | |
| ! | AATCCGACCCATTTTCAAAC+GGG | + | Chr3:101928198-101928217 | None:intergenic | 40.0% |
| ! | CAATCCGACCCATTTTCAAA+CGG | + | Chr3:101928199-101928218 | None:intergenic | 40.0% |
| ! | GAAATCTGGAACTTTCTCAG+CGG | + | Chr3:101927523-101927542 | None:intergenic | 40.0% |
| ! | GGTTTGAGGTTGTTAAGGAA+CGG | - | Chr3:101928138-101928157 | MsG0380017891.01.T01:CDS | 40.0% |
| ! | GTTTGAGGTTGTTAAGGAAC+GGG | - | Chr3:101928139-101928158 | MsG0380017891.01.T01:CDS | 40.0% |
| ! | TCTCTATGCGATGTTGTTTG+TGG | - | Chr3:101927840-101927859 | MsG0380017891.01.T01:CDS | 40.0% |
| !! | AATAGCGGGTGAAAAATGGA+AGG | + | Chr3:101927601-101927620 | None:intergenic | 40.0% |
| !! | GTAACGGTTTTGTCTGCTTT+GGG | - | Chr3:101928242-101928261 | MsG0380017891.01.T01:CDS | 40.0% |
| !! | TATGAAACGTAAAGAGCACC+AGG | + | Chr3:101927984-101928003 | None:intergenic | 40.0% |
| !!! | ACTGTCTTGGACTTTTTCAG+CGG | + | Chr3:101927454-101927473 | None:intergenic | 40.0% |
| AATGGCGGTAGATCTAATCG+AGG | - | Chr3:101927662-101927681 | MsG0380017891.01.T01:CDS | 45.0% | |
| AATTGAACCGCCGGATAGAT+CGG | + | Chr3:101927430-101927449 | None:intergenic | 45.0% | |
| CCGATATTTACGAATGGGGT+TGG | - | Chr3:101927568-101927587 | MsG0380017891.01.T01:CDS | 45.0% | |
| CTACGCTGATATAGCTGAAG+CGG | - | Chr3:101928103-101928122 | MsG0380017891.01.T01:CDS | 45.0% | |
| CTGCAGAGAATCATGTGCAT+AGG | + | Chr3:101928359-101928378 | None:intergenic | 45.0% | |
| GATCTACCGCCATTTCTTCA+TGG | + | Chr3:101927656-101927675 | None:intergenic | 45.0% | |
| GTCAGATTTACCGGGAATAG+CGG | + | Chr3:101927616-101927635 | None:intergenic | 45.0% | |
| TATAGCTGAAGCGGCTAAGA+AGG | - | Chr3:101928112-101928131 | MsG0380017891.01.T01:CDS | 45.0% | |
| TCAGATTTACCGGGAATAGC+GGG | + | Chr3:101927615-101927634 | None:intergenic | 45.0% | |
| ! | ATTTTCAAACGGGTCCACCA+TGG | + | Chr3:101928188-101928207 | None:intergenic | 45.0% |
| ! | CAGCGGTTTCGATCTCTTTT+GGG | + | Chr3:101927506-101927525 | None:intergenic | 45.0% |
| ! | CATTTTTCACCCGCTATTCC+CGG | - | Chr3:101927603-101927622 | MsG0380017891.01.T01:CDS | 45.0% |
| ! | GGTTGGGTTTGAGGTTGTTA+AGG | - | Chr3:101928133-101928152 | MsG0380017891.01.T01:CDS | 45.0% |
| ! | TCAGCGGTTTCGATCTCTTT+TGG | + | Chr3:101927507-101927526 | None:intergenic | 45.0% |
| ! | TGGTGGACCCGTTTGAAAAT+GGG | - | Chr3:101928188-101928207 | MsG0380017891.01.T01:CDS | 45.0% |
| !! | ATGGTGGACCCGTTTGAAAA+TGG | - | Chr3:101928187-101928206 | MsG0380017891.01.T01:CDS | 45.0% |
| !! | GCTTTGGGAATTGCACCTAA+AGG | - | Chr3:101928257-101928276 | MsG0380017891.01.T01:CDS | 45.0% |
| !! | GGTAACGGTTTTGTCTGCTT+TGG | - | Chr3:101928241-101928260 | MsG0380017891.01.T01:CDS | 45.0% |
| !!! | ACTGCTGACTTTTTGACCAG+AGG | - | Chr3:101928311-101928330 | MsG0380017891.01.T01:CDS | 45.0% |
| !!! | CTGCTGACTTTTTGACCAGA+GGG | - | Chr3:101928312-101928331 | MsG0380017891.01.T01:CDS | 45.0% |
| !!! | TGCTGACTTTTTGACCAGAG+GGG | - | Chr3:101928313-101928332 | MsG0380017891.01.T01:CDS | 45.0% |
| AAAGAGGTGATGCGCTTCCT+GGG | - | Chr3:101928072-101928091 | MsG0380017891.01.T01:CDS | 50.0% | |
| AATTCCAGTATCACCCCCTC+TGG | + | Chr3:101928330-101928349 | None:intergenic | 50.0% | |
| ACCCTTTCTCTCTTCTGCAC+CGG | - | Chr3:101927330-101927349 | MsG0380017891.01.T01:CDS | 50.0% | |
| ATGAGACGCGATAGCTCTCA+TGG | + | Chr3:101927736-101927755 | None:intergenic | 50.0% | |
| ATGTAGGTTGCGGTGTAGGT+GGG | - | Chr3:101927709-101927728 | MsG0380017891.01.T01:CDS | 50.0% | |
| CATTCACGCGCTAACGTTGT+TGG | - | Chr3:101927753-101927772 | MsG0380017891.01.T01:CDS | 50.0% | |
| CGCTTCAGCTATATCAGCGT+AGG | + | Chr3:101928105-101928124 | None:intergenic | 50.0% | |
| CTACCGCCATTTCTTCATGG+AGG | + | Chr3:101927653-101927672 | None:intergenic | 50.0% | |
| CTGAAGCGGCTAAGAAGGTT+GGG | - | Chr3:101928117-101928136 | MsG0380017891.01.T01:CDS | 50.0% | |
| CTTCTTCAAGATTAGGCGCG+TGG | + | Chr3:101927932-101927951 | None:intergenic | 50.0% | |
| GCATCACGGTCAGATTTACC+GGG | + | Chr3:101927624-101927643 | None:intergenic | 50.0% | |
| GGACCCGTTTGAAAATGGGT+CGG | - | Chr3:101928192-101928211 | MsG0380017891.01.T01:CDS | 50.0% | |
| GGCATCACGGTCAGATTTAC+CGG | + | Chr3:101927625-101927644 | None:intergenic | 50.0% | |
| GGCTAAGAAGGTTGGGTTTG+AGG | - | Chr3:101928124-101928143 | MsG0380017891.01.T01:CDS | 50.0% | |
| GGTTGTTAAGGAACGGGATC+TGG | - | Chr3:101928145-101928164 | MsG0380017891.01.T01:CDS | 50.0% | |
| TCCGGTGCAGAAGAGAGAAA+GGG | + | Chr3:101927334-101927353 | None:intergenic | 50.0% | |
| TGAGACGCGATAGCTCTCAT+GGG | + | Chr3:101927735-101927754 | None:intergenic | 50.0% | |
| TTCAGCGGAAATTGAACCGC+CGG | + | Chr3:101927439-101927458 | None:intergenic | 50.0% | |
| ! | CGGTTTCGATCTCTTTTGGG+CGG | + | Chr3:101927503-101927522 | None:intergenic | 50.0% |
| ! | GTTTGCCTTTTCGTTCGGCA+GGG | + | Chr3:101927401-101927420 | None:intergenic | 50.0% |
| ! | TTTCGATCTCTTTTGGGCGG+CGG | + | Chr3:101927500-101927519 | None:intergenic | 50.0% |
| !! | CGGGAATAGCGGGTGAAAAA+TGG | + | Chr3:101927605-101927624 | None:intergenic | 50.0% |
| !! | GCTGACTTTTTGACCAGAGG+GGG | - | Chr3:101928314-101928333 | MsG0380017891.01.T01:CDS | 50.0% |
| AAACGCGCCACCGATCTATC+CGG | - | Chr3:101927417-101927436 | MsG0380017891.01.T01:CDS | 55.0% | |
| CACGCGCCTCCATGAAGAAA+TGG | - | Chr3:101927644-101927663 | MsG0380017891.01.T01:CDS | 55.0% | |
| CTCCGGTGCAGAAGAGAGAA+AGG | + | Chr3:101927335-101927354 | None:intergenic | 55.0% | |
| CTCGATGTAGGTTGCGGTGT+AGG | - | Chr3:101927705-101927724 | MsG0380017891.01.T01:CDS | 55.0% | |
| GAAAGAGGTGATGCGCTTCC+TGG | - | Chr3:101928071-101928090 | MsG0380017891.01.T01:CDS | 55.0% | |
| GATGTAGGTTGCGGTGTAGG+TGG | - | Chr3:101927708-101927727 | MsG0380017891.01.T01:CDS | 55.0% | |
| GCGCCGTCGAAGCTGTTATT+GGG | + | Chr3:101927888-101927907 | None:intergenic | 55.0% | |
| GCGCCTCCATGAAGAAATGG+CGG | - | Chr3:101927647-101927666 | MsG0380017891.01.T01:CDS | 55.0% | |
| GCTGAAGCGGCTAAGAAGGT+TGG | - | Chr3:101928116-101928135 | MsG0380017891.01.T01:CDS | 55.0% | |
| TTGACCAGAGGGGGTGATAC+TGG | - | Chr3:101928323-101928342 | MsG0380017891.01.T01:CDS | 55.0% | |
| ! | CATTTCTTCATGGAGGCGCG+TGG | + | Chr3:101927646-101927665 | None:intergenic | 55.0% |
| ! | CGTTTGCCTTTTCGTTCGGC+AGG | + | Chr3:101927402-101927421 | None:intergenic | 55.0% |
| ! | GGCGCGTTTGCCTTTTCGTT+CGG | + | Chr3:101927406-101927425 | None:intergenic | 55.0% |
| !! | TACTGGTTCGTCTGCGTCCT+CGG | - | Chr3:101927375-101927394 | MsG0380017891.01.T01:CDS | 55.0% |
| !! | TCAGCGTAGGTTCTAAGCCC+AGG | + | Chr3:101928092-101928111 | None:intergenic | 55.0% |
| AAGATTAGGCGCGTGGCACG+TGG | + | Chr3:101927925-101927944 | None:intergenic | 60.0% | |
| AGCCACCGTCTCATCCATGG+TGG | - | Chr3:101928171-101928190 | MsG0380017891.01.T01:CDS | 60.0% | |
| CGCGCCGTCGAAGCTGTTAT+TGG | + | Chr3:101927889-101927908 | None:intergenic | 60.0% | |
| CGGGTCCACCATGGATGAGA+CGG | + | Chr3:101928179-101928198 | None:intergenic | 60.0% | |
| CTCAGCCACCGTCTCATCCA+TGG | - | Chr3:101928168-101928187 | MsG0380017891.01.T01:CDS | 60.0% | |
| GACGAACCAGTAGAGACCGC+CGG | + | Chr3:101927367-101927386 | None:intergenic | 60.0% | |
| GTCCACCATGGATGAGACGG+TGG | + | Chr3:101928176-101928195 | None:intergenic | 60.0% | |
| TGAACCGCCGGATAGATCGG+TGG | + | Chr3:101927427-101927446 | None:intergenic | 60.0% | |
| CTCGGCCCTGCCGAACGAAA+AGG | - | Chr3:101927393-101927412 | MsG0380017891.01.T01:CDS | 65.0% | |
| ! | CATGGAGGCGCGTGGCATCA+CGG | + | Chr3:101927638-101927657 | None:intergenic | 65.0% |
| ! | CTTTTCGTTCGGCAGGGCCG+AGG | + | Chr3:101927395-101927414 | None:intergenic | 65.0% |
| ACCAGTAGAGACCGCCGGCG+AGG | + | Chr3:101927362-101927381 | None:intergenic | 70.0% | |
| AGTAGAGACCGCCGGCGAGG+AGG | + | Chr3:101927359-101927378 | None:intergenic | 70.0% | |
| CGCGCCACCGATCTATCCGG+CGG | - | Chr3:101927420-101927439 | MsG0380017891.01.T01:CDS | 70.0% | |
| GTAGAGACCGCCGGCGAGGA+GGG | + | Chr3:101927358-101927377 | None:intergenic | 70.0% | |
| TCCTCGCCGGCGGTCTCTAC+TGG | - | Chr3:101927358-101927377 | MsG0380017891.01.T01:CDS | 70.0% | |
| TGCACCGGAGCCCTCCTCGC+CGG | - | Chr3:101927345-101927364 | MsG0380017891.01.T01:CDS | 75.0% | |
| ! | ACCGCCGGCGAGGAGGGCTC+CGG | + | Chr3:101927352-101927371 | None:intergenic | 80.0% |
| ! | ACCGGAGCCCTCCTCGCCGG+CGG | - | Chr3:101927348-101927367 | MsG0380017891.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 101927324 | 101928406 | 101927324 | ID=MsG0380017891.01;Name=MsG0380017891.01 |
| Chr3 | mRNA | 101927324 | 101928406 | 101927324 | ID=MsG0380017891.01.T01;Parent=MsG0380017891.01;Name=MsG0380017891.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|360 |
| Chr3 | exon | 101927324 | 101928406 | 101927324 | ID=MsG0380017891.01.T01:exon:18217;Parent=MsG0380017891.01.T01 |
| Chr3 | CDS | 101927324 | 101928406 | 101927324 | ID=MsG0380017891.01.T01:cds;Parent=MsG0380017891.01.T01 |
| Gene Sequence |
| Protein sequence |
