AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013026.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013026.01.T01 MTR_3g437420 47.967 123 28 3 1 121 1 89 6.81e-24 88.2
MsG0380013026.01.T01 MTR_7g056250 46.341 123 30 3 1 121 1 89 7.18e-23 85.5
MsG0380013026.01.T01 MTR_3g437450 70.370 54 9 1 71 117 102 155 1.19e-17 77.0
MsG0380013026.01.T01 MTR_3g437420 97.143 35 1 0 1 35 1 35 4.36e-16 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013026.01.T01 AT1G48140 35.772 123 43 3 1 121 1 89 6.65e-16 67.8
MsG0380013026.01.T01 AT1G48140 74.286 35 9 0 1 35 1 35 8.72e-13 59.7

Find 30 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGTGTAAGGGAATTT+TGG 0.142141 3:+28891630 MsG0380013026.01.T01:intron
TAATTGCCATCACTGCTTTA+TGG 0.201906 3:+28889796 MsG0380013026.01.T01:CDS
AGGATGTTACGGTCTATTAA+TGG 0.288239 3:+28890209 MsG0380013026.01.T01:CDS
AATTGCCATCACTGCTTTAT+GGG 0.343013 3:+28889797 MsG0380013026.01.T01:CDS
CCTTTGCTTCAAATATTCCT+TGG 0.386512 3:-28891981 None:intergenic
TGAGAAAGATGGTCCATTGC+AGG 0.392334 3:-28891712 None:intergenic
GCCATCACTGCTTTATGGGT+TGG 0.406869 3:+28889801 MsG0380013026.01.T01:CDS
ACCAACCAAGTATGACTTTG+AGG 0.427005 3:-28889846 None:intergenic
CAAAGTCATACTTGGTTGGT+AGG 0.455382 3:+28889849 MsG0380013026.01.T01:CDS
TCATTCCTCAAAGTCATACT+TGG 0.460967 3:+28889841 MsG0380013026.01.T01:CDS
ATGATGTGAATCCAAAGCTT+TGG 0.465833 3:-28891656 None:intergenic
AGAAGCCCTGTTGTTGCAAA+AGG 0.467171 3:+28890269 MsG0380013026.01.T01:CDS
GGTCTATTAATGGTTGGAGT+TGG 0.472163 3:+28890219 MsG0380013026.01.T01:CDS
CAAGGAATATTTGAAGCAAA+GGG 0.473157 3:+28891982 MsG0380013026.01.T01:CDS
GAATGATAGAAGTTTGTAGA+AGG 0.473750 3:-28889824 None:intergenic
GTCGTGTCTTTAGGATGTTA+CGG 0.478343 3:+28890198 MsG0380013026.01.T01:CDS
ACAGGATATTGTTGAGGCCA+AGG 0.487407 3:+28891964 MsG0380013026.01.T01:intron
GATATACAAAACACATCAGT+TGG 0.507291 3:-28892020 None:intergenic
AAAGACACGACAAAATAGAT+TGG 0.512576 3:-28890186 None:intergenic
TTCAATCGAACTGAGAAAGA+TGG 0.519399 3:-28891723 None:intergenic
CCAAGGAATATTTGAAGCAA+AGG 0.542512 3:+28891981 MsG0380013026.01.T01:CDS
TCCTCAAAGTCATACTTGGT+TGG 0.545138 3:+28889845 MsG0380013026.01.T01:CDS
GCCAACCCATAAAGCAGTGA+TGG 0.562669 3:-28889802 None:intergenic
TGTTACGGTCTATTAATGGT+TGG 0.564374 3:+28890213 MsG0380013026.01.T01:CDS
TTCTTTACAGGATATTGTTG+AGG 0.565302 3:+28891958 MsG0380013026.01.T01:intron
TATTGTAAAGATATTGTCAC+TGG 0.566011 3:+28889773 MsG0380013026.01.T01:CDS
TGCAACAACAGGGCTTCTTG+AGG 0.575185 3:-28890264 None:intergenic
AGGGCTTCTTGAGGACAAGT+AGG 0.584926 3:-28890255 None:intergenic
CTGTCTAGCACATCCTGCAA+TGG 0.606897 3:+28891699 MsG0380013026.01.T01:CDS
AAGGAATATTTGAAGCAAAG+GGG 0.722853 3:+28891983 MsG0380013026.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGTTTTTTTTTTTTTTG+TGG + Chr3:28889900-28889919 MsG0380013026.01.T01:intron 10.0%
!!! TTATATAATGATAAGTTTTT+TGG - Chr3:28891206-28891225 None:intergenic 10.0%
!!! TTATGAGAAAATTTTTAAAA+GGG + Chr3:28890685-28890704 MsG0380013026.01.T01:intron 10.0%
!!! TTTATGAGAAAATTTTTAAA+AGG + Chr3:28890684-28890703 MsG0380013026.01.T01:intron 10.0%
!! AGTTCTATCAAAATATAAAA+AGG - Chr3:28890118-28890137 None:intergenic 15.0%
!!! AAGGATTTTTTTTTTTTTTG+AGG - Chr3:28891528-28891547 None:intergenic 15.0%
!!! ATTTTTTTTTTTTTTGAGGA+AGG - Chr3:28891524-28891543 None:intergenic 15.0%
!!! TATGAGAAAATTTTTAAAAG+GGG + Chr3:28890686-28890705 MsG0380013026.01.T01:intron 15.0%
!! ACTGTAAAGAAACAAAAATT+TGG - Chr3:28890760-28890779 None:intergenic 20.0%
!! GATGATTATTTAACTGATTA+AGG - Chr3:28891867-28891886 None:intergenic 20.0%
!! TATTAGGGATATAAATGTTA+TGG + Chr3:28891228-28891247 MsG0380013026.01.T01:intron 20.0%
!! TTAGAAATTAGCTATTACTA+AGG + Chr3:28890508-28890527 MsG0380013026.01.T01:intron 20.0%
!!! AAATATAAAAAGGCATCAAA+AGG - Chr3:28890108-28890127 None:intergenic 20.0%
!!! ACATTTTGATAGAAATAATG+AGG - Chr3:28891356-28891375 None:intergenic 20.0%
!!! ATTTGTGATTGACATATTTT+TGG - Chr3:28890613-28890632 None:intergenic 20.0%
!!! TTATATGGACCTTTTTAAAT+GGG + Chr3:28890803-28890822 MsG0380013026.01.T01:intron 20.0%
!!! TTTTTTTTTTTTGTGGTCTA+TGG + Chr3:28889907-28889926 MsG0380013026.01.T01:intron 20.0%
! AAATCTTTACTTGGTTCAAA+TGG + Chr3:28891797-28891816 MsG0380013026.01.T01:intron 25.0%
! AAGATATCCTTGCAATTTAA+CGG + Chr3:28890555-28890574 MsG0380013026.01.T01:intron 25.0%
! AATAAGAAATCATACTCCAT+TGG + Chr3:28891415-28891434 MsG0380013026.01.T01:intron 25.0%
! ACAACGAAATATGTATAGAA+GGG + Chr3:28891097-28891116 MsG0380013026.01.T01:intron 25.0%
! ACTTCAAACAATTGTAGAAA+AGG - Chr3:28890409-28890428 None:intergenic 25.0%
! ATAAGAAATCATACTCCATT+GGG + Chr3:28891416-28891435 MsG0380013026.01.T01:intron 25.0%
! ATACATATTTCGTTGTCTAT+AGG - Chr3:28891093-28891112 None:intergenic 25.0%
! ATATACTTACCAAACTGTTT+AGG + Chr3:28891032-28891051 MsG0380013026.01.T01:intron 25.0%
! ATTAAAAGTAAAGCATGTGA+TGG - Chr3:28889882-28889901 None:intergenic 25.0%
! ATTTGAACCAAGTAAAGATT+TGG - Chr3:28891798-28891817 None:intergenic 25.0%
! CTAATCAAAATGTTCAATGA+GGG - Chr3:28891559-28891578 None:intergenic 25.0%
! GTAATAGCTAATTTCTAAAC+TGG - Chr3:28890506-28890525 None:intergenic 25.0%
! TATTGTAAAGATATTGTCAC+TGG + Chr3:28889773-28889792 MsG0380013026.01.T01:CDS 25.0%
! TCTAATCAAAATGTTCAATG+AGG - Chr3:28891560-28891579 None:intergenic 25.0%
! TGATTAGAAAAAATTGTTGC+AGG + Chr3:28891572-28891591 MsG0380013026.01.T01:intron 25.0%
! TTAAAAAGGTCCATATAAGA+GGG - Chr3:28890801-28890820 None:intergenic 25.0%
! TTTAAAAAGGTCCATATAAG+AGG - Chr3:28890802-28890821 None:intergenic 25.0%
! TTTGAACCAAGTAAAGATTT+GGG - Chr3:28891797-28891816 None:intergenic 25.0%
!! CAATTGTTTGAAGTAATTTC+AGG + Chr3:28890415-28890434 MsG0380013026.01.T01:intron 25.0%
!! CTTATATGGACCTTTTTAAA+TGG + Chr3:28890802-28890821 MsG0380013026.01.T01:intron 25.0%
!! TATATGGACCTTTTTAAATG+GGG + Chr3:28890804-28890823 MsG0380013026.01.T01:intron 25.0%
!! TTGTGCTTTTATAGTTCATA+CGG + Chr3:28890345-28890364 MsG0380013026.01.T01:intron 25.0%
!!! AAGAAGGATGTTTTTGATAA+TGG - Chr3:28891501-28891520 None:intergenic 25.0%
!!! ACAAAATGAGCAACATTTTT+TGG - Chr3:28891935-28891954 None:intergenic 25.0%
!!! GATAAGTTTTTTGGTTCTTT+GGG - Chr3:28891197-28891216 None:intergenic 25.0%
!!! GATACAAATTAGCTATTTTG+AGG + Chr3:28890475-28890494 MsG0380013026.01.T01:intron 25.0%
!!! TCATTTTGTTGTTTCTTTAC+AGG + Chr3:28891946-28891965 MsG0380013026.01.T01:intron 25.0%
!!! TGATAAGTTTTTTGGTTCTT+TGG - Chr3:28891198-28891217 None:intergenic 25.0%
AAAGACACGACAAAATAGAT+TGG - Chr3:28890189-28890208 None:intergenic 30.0%
AAATGAGTGATAAATCCTCA+AGG - Chr3:28890725-28890744 None:intergenic 30.0%
AACGAAATATGTATAGAAGG+GGG + Chr3:28891099-28891118 MsG0380013026.01.T01:intron 30.0%
AATAATCATCCAAATGATCG+TGG + Chr3:28891877-28891896 MsG0380013026.01.T01:intron 30.0%
ACAATTGAATTTGAACACAG+TGG - Chr3:28891171-28891190 None:intergenic 30.0%
ATAATCATCCAAATGATCGT+GGG + Chr3:28891878-28891897 MsG0380013026.01.T01:intron 30.0%
ATGCAACATGATTTGAAAAG+TGG - Chr3:28891269-28891288 None:intergenic 30.0%
CAAATCATGTTGCATAAACA+GGG + Chr3:28891274-28891293 MsG0380013026.01.T01:intron 30.0%
CAACGAAATATGTATAGAAG+GGG + Chr3:28891098-28891117 MsG0380013026.01.T01:intron 30.0%
CAATTGAATTTGAACACAGT+GGG - Chr3:28891170-28891189 None:intergenic 30.0%
CATACCATGCTAATCAATAT+GGG - Chr3:28891445-28891464 None:intergenic 30.0%
GAATGATAGAAGTTTGTAGA+AGG - Chr3:28889827-28889846 None:intergenic 30.0%
GACAACGAAATATGTATAGA+AGG + Chr3:28891096-28891115 MsG0380013026.01.T01:intron 30.0%
TAGGGATATAAATGTTATGG+TGG + Chr3:28891231-28891250 MsG0380013026.01.T01:intron 30.0%
TATTTCCCACACACTTAATT+TGG + Chr3:28890453-28890472 MsG0380013026.01.T01:intron 30.0%
TCAAATCATGTTGCATAAAC+AGG + Chr3:28891273-28891292 MsG0380013026.01.T01:intron 30.0%
TCATACCATGCTAATCAATA+TGG - Chr3:28891446-28891465 None:intergenic 30.0%
TGTATCCAAATTAAGTGTGT+GGG - Chr3:28890461-28890480 None:intergenic 30.0%
TGTATTTCATGTCATAGCTT+TGG - Chr3:28889970-28889989 None:intergenic 30.0%
TTACAGTGCACTTATATTTC+TGG + Chr3:28890773-28890792 MsG0380013026.01.T01:intron 30.0%
TTCTTTACAGGATATTGTTG+AGG + Chr3:28891958-28891977 MsG0380013026.01.T01:intron 30.0%
TTGAACCAAGTAAAGATTTG+GGG - Chr3:28891796-28891815 None:intergenic 30.0%
TTGTATCCAAATTAAGTGTG+TGG - Chr3:28890462-28890481 None:intergenic 30.0%
TTTCTCAGTTCGATTGAATA+AGG + Chr3:28891728-28891747 MsG0380013026.01.T01:intron 30.0%
! AAGGAATATTTGAAGCAAAG+GGG + Chr3:28891983-28892002 MsG0380013026.01.T01:CDS 30.0%
! AATTTTGGATACCAAAGCTT+TGG + Chr3:28891645-28891664 MsG0380013026.01.T01:CDS 30.0%
! AGAAACAAAAATTTGGTGAC+AGG - Chr3:28890753-28890772 None:intergenic 30.0%
! ATCTATTTTGTCGTGTCTTT+AGG + Chr3:28890189-28890208 MsG0380013026.01.T01:CDS 30.0%
! CAAGGAATATTTGAAGCAAA+GGG + Chr3:28891982-28892001 MsG0380013026.01.T01:CDS 30.0%
!! AATTTTTAAAAGGGGAGCTA+AGG + Chr3:28890694-28890713 MsG0380013026.01.T01:intron 30.0%
!! TAAAAAGGCATCAAAAGGTT+TGG - Chr3:28890103-28890122 None:intergenic 30.0%
!!! AAGGATGTTTTTGATAATGG+TGG - Chr3:28891498-28891517 None:intergenic 30.0%
!!! TGTGATTGACATATTTTTGG+AGG - Chr3:28890610-28890629 None:intergenic 30.0%
!!! TTTTTTTTGAGGAAGGAAGA+AGG - Chr3:28891517-28891536 None:intergenic 30.0%
AAGGGGGACAAAAATATTGT+GGG + Chr3:28891115-28891134 MsG0380013026.01.T01:intron 35.0%
AATCAATATGGGATACCCAA+TGG - Chr3:28891434-28891453 None:intergenic 35.0%
AATTGCCATCACTGCTTTAT+GGG + Chr3:28889797-28889816 MsG0380013026.01.T01:CDS 35.0%
AGGATGTTACGGTCTATTAA+TGG + Chr3:28890209-28890228 MsG0380013026.01.T01:CDS 35.0%
ATGATGTGAATCCAAAGCTT+TGG - Chr3:28891659-28891678 None:intergenic 35.0%
CAAAATGTTCAATGAGGGAA+GGG - Chr3:28891554-28891573 None:intergenic 35.0%
CACATTATAAGTCCTCATTG+GGG - Chr3:28889993-28890012 None:intergenic 35.0%
CCTTTGCTTCAAATATTCCT+TGG - Chr3:28891984-28892003 None:intergenic 35.0%
CTATAGCCATAAATCCTCAA+GGG - Chr3:28890842-28890861 None:intergenic 35.0%
CTATGGTACAATGATGTGTT+GGG + Chr3:28889924-28889943 MsG0380013026.01.T01:intron 35.0%
CTTGCAAATGCAATGTGTAA+GGG + Chr3:28891622-28891641 MsG0380013026.01.T01:intron 35.0%
GACTAAAATTCGAATGTCTG+AGG - Chr3:28890664-28890683 None:intergenic 35.0%
GCACATTATAAGTCCTCATT+GGG - Chr3:28889994-28890013 None:intergenic 35.0%
TAATTGCCATCACTGCTTTA+TGG + Chr3:28889796-28889815 MsG0380013026.01.T01:CDS 35.0%
TATGGTACAATGATGTGTTG+GGG + Chr3:28889925-28889944 MsG0380013026.01.T01:intron 35.0%
TCAAAATGTTCAATGAGGGA+AGG - Chr3:28891555-28891574 None:intergenic 35.0%
TCATTCCTCAAAGTCATACT+TGG + Chr3:28889841-28889860 MsG0380013026.01.T01:CDS 35.0%
TCTATAGCCATAAATCCTCA+AGG - Chr3:28890843-28890862 None:intergenic 35.0%
TCTATGGTACAATGATGTGT+TGG + Chr3:28889923-28889942 MsG0380013026.01.T01:intron 35.0%
TCTTGCAAATGCAATGTGTA+AGG + Chr3:28891621-28891640 MsG0380013026.01.T01:intron 35.0%
TGAGGATTTATGGCTATAGA+AGG + Chr3:28890843-28890862 MsG0380013026.01.T01:intron 35.0%
TGCACATTATAAGTCCTCAT+TGG - Chr3:28889995-28890014 None:intergenic 35.0%
TGTTACGGTCTATTAATGGT+TGG + Chr3:28890213-28890232 MsG0380013026.01.T01:CDS 35.0%
TTCAATCGAACTGAGAAAGA+TGG - Chr3:28891726-28891745 None:intergenic 35.0%
TTCGGTTGGATTTACTGTTT+CGG + Chr3:28890961-28890980 MsG0380013026.01.T01:intron 35.0%
! AACATACCTTTTGCAACAAC+AGG - Chr3:28890278-28890297 None:intergenic 35.0%
! ACATACCTTTTGCAACAACA+GGG - Chr3:28890277-28890296 None:intergenic 35.0%
! ATAGATTGGTAGCTGCATAA+AGG - Chr3:28890175-28890194 None:intergenic 35.0%
! ATCAAAAGGTTTGGTTAAGC+TGG - Chr3:28890094-28890113 None:intergenic 35.0%
! ATCTGTTGTACTTGGTTCTT+TGG + Chr3:28890924-28890943 MsG0380013026.01.T01:intron 35.0%
! CCAAGGAATATTTGAAGCAA+AGG + Chr3:28891981-28892000 MsG0380013026.01.T01:CDS 35.0%
! GTATCCCATATTGATTAGCA+TGG + Chr3:28891438-28891457 MsG0380013026.01.T01:intron 35.0%
! TCTGTTGTACTTGGTTCTTT+GGG + Chr3:28890925-28890944 MsG0380013026.01.T01:intron 35.0%
! TGCAATGTGTAAGGGAATTT+TGG + Chr3:28891630-28891649 MsG0380013026.01.T01:intron 35.0%
!! ATTTCTGGTTCCCTCTTATA+TGG + Chr3:28890788-28890807 MsG0380013026.01.T01:intron 35.0%
!! CTGATTAAGGAGCATTTAAG+AGG - Chr3:28891854-28891873 None:intergenic 35.0%
ACAGATTCAGCAAGTAGTTG+TGG - Chr3:28890910-28890929 None:intergenic 40.0%
ACATGAAATACACCCCAATG+AGG + Chr3:28889978-28889997 MsG0380013026.01.T01:intron 40.0%
ACCAACCAAGTATGACTTTG+AGG - Chr3:28889849-28889868 None:intergenic 40.0%
AGACTTTGCTTGTAAGGCTT+AGG - Chr3:28890061-28890080 None:intergenic 40.0%
AGGGGGACAAAAATATTGTG+GGG + Chr3:28891116-28891135 MsG0380013026.01.T01:intron 40.0%
AGTCTACAGCCTAAACAGTT+TGG - Chr3:28891044-28891063 None:intergenic 40.0%
ATGCAACTACTAATGCACAG+AGG - Chr3:28890304-28890323 None:intergenic 40.0%
CAAAGTCATACTTGGTTGGT+AGG + Chr3:28889849-28889868 MsG0380013026.01.T01:CDS 40.0%
CCTTAGGTCCCCATTTAAAA+AGG - Chr3:28890815-28890834 None:intergenic 40.0%
CCTTGCAATTTAACGGAGAA+GGG + Chr3:28890562-28890581 MsG0380013026.01.T01:intron 40.0%
CTGCATAAAGGACAGAAGAA+TGG - Chr3:28890163-28890182 None:intergenic 40.0%
CTTAATGAATCCAGTCCAGT+GGG - Chr3:28891332-28891351 None:intergenic 40.0%
CTTGCTGAATCTGTTGTACT+TGG + Chr3:28890916-28890935 MsG0380013026.01.T01:intron 40.0%
GAAGGGGGACAAAAATATTG+TGG + Chr3:28891114-28891133 MsG0380013026.01.T01:intron 40.0%
GATATGATCCCACGATCATT+TGG - Chr3:28891889-28891908 None:intergenic 40.0%
GATCGAAGACTTTGCTTGTA+AGG - Chr3:28890067-28890086 None:intergenic 40.0%
GGTCTATTAATGGTTGGAGT+TGG + Chr3:28890219-28890238 MsG0380013026.01.T01:CDS 40.0%
TATTCTCCGAAACCATGAGA+TGG - Chr3:28891015-28891034 None:intergenic 40.0%
TCATGCCCCAAATCTTTACT+TGG + Chr3:28891788-28891807 MsG0380013026.01.T01:intron 40.0%
TCCTCAAAGTCATACTTGGT+TGG + Chr3:28889845-28889864 MsG0380013026.01.T01:CDS 40.0%
TCCTTGCAATTTAACGGAGA+AGG + Chr3:28890561-28890580 MsG0380013026.01.T01:intron 40.0%
TTAATGAATCCAGTCCAGTG+GGG - Chr3:28891331-28891350 None:intergenic 40.0%
TTGGGCATCAGAATCTAGTT+CGG + Chr3:28890943-28890962 MsG0380013026.01.T01:intron 40.0%
! AAGGTTTGGTTAAGCTGGAA+AGG - Chr3:28890089-28890108 None:intergenic 40.0%
! CCTTTTTAAATGGGGACCTA+AGG + Chr3:28890812-28890831 MsG0380013026.01.T01:intron 40.0%
! CTAGACAGTTTTGCATGACA+AGG - Chr3:28891687-28891706 None:intergenic 40.0%
! TTTTAAATGGGGACCTAAGG+TGG + Chr3:28890815-28890834 MsG0380013026.01.T01:intron 40.0%
!! GTCGTGTCTTTAGGATGTTA+CGG + Chr3:28890198-28890217 MsG0380013026.01.T01:CDS 40.0%
!! TTTTAAAAGGGGAGCTAAGG+TGG + Chr3:28890697-28890716 MsG0380013026.01.T01:intron 40.0%
ACAGGATATTGTTGAGGCCA+AGG + Chr3:28891964-28891983 MsG0380013026.01.T01:intron 45.0%
AGAAGCCCTGTTGTTGCAAA+AGG + Chr3:28890269-28890288 MsG0380013026.01.T01:CDS 45.0%
CAACTACTAATGCACAGAGG+TGG - Chr3:28890301-28890320 None:intergenic 45.0%
CCCTTCTCCGTTAAATTGCA+AGG - Chr3:28890565-28890584 None:intergenic 45.0%
CCTTAATGAATCCAGTCCAG+TGG - Chr3:28891333-28891352 None:intergenic 45.0%
GATTCAGCAAGTAGTTGTGG+TGG - Chr3:28890907-28890926 None:intergenic 45.0%
TAATGAATCCAGTCCAGTGG+GGG - Chr3:28891330-28891349 None:intergenic 45.0%
TAGACTACCAACGAGATTGC+TGG + Chr3:28890021-28890040 MsG0380013026.01.T01:intron 45.0%
TGAGAAAGATGGTCCATTGC+AGG - Chr3:28891715-28891734 None:intergenic 45.0%
TGCATAAACAGGGTAATCCC+TGG + Chr3:28891284-28891303 MsG0380013026.01.T01:intron 45.0%
TTCAATGAGGGAAGGGAAGA+AGG - Chr3:28891547-28891566 None:intergenic 45.0%
TTGGGGTGAGAAAGCTTATC+TGG + Chr3:28889942-28889961 MsG0380013026.01.T01:intron 45.0%
! CCACTGGACTGGATTCATTA+AGG + Chr3:28891330-28891349 MsG0380013026.01.T01:intron 45.0%
! GCATCAGAATCTAGTTCGGT+TGG + Chr3:28890947-28890966 MsG0380013026.01.T01:intron 45.0%
! TTGCACTGGCAAAGGAAGAA+GGG - Chr3:28890884-28890903 None:intergenic 45.0%
!! TATCATTATATAAAATATTA+GGG + Chr3:28891213-28891232 MsG0380013026.01.T01:intron 5.0%
!! TTATCATTATATAAAATATT+AGG + Chr3:28891212-28891231 MsG0380013026.01.T01:intron 5.0%
AATCCTCAAGGGACCACCTT+AGG - Chr3:28890831-28890850 None:intergenic 50.0%
AGGGCTTCTTGAGGACAAGT+AGG - Chr3:28890258-28890277 None:intergenic 50.0%
AGTAGTTGTGGTGGTTGCAC+TGG - Chr3:28890898-28890917 None:intergenic 50.0%
CAATCCAAAGACGTAGTGCG+TGG + Chr3:28890986-28891005 MsG0380013026.01.T01:intron 50.0%
CACGCACTACGTCTTTGGAT+TGG - Chr3:28890988-28891007 None:intergenic 50.0%
CTGTCTAGCACATCCTGCAA+TGG + Chr3:28891699-28891718 MsG0380013026.01.T01:CDS 50.0%
GCCAACCCATAAAGCAGTGA+TGG - Chr3:28889805-28889824 None:intergenic 50.0%
GCCATCACTGCTTTATGGGT+TGG + Chr3:28889801-28889820 MsG0380013026.01.T01:CDS 50.0%
GGTGGTCCCTTGAGGATTTA+TGG + Chr3:28890833-28890852 MsG0380013026.01.T01:intron 50.0%
TCTCCGAAACCATGAGATGG+AGG - Chr3:28891012-28891031 None:intergenic 50.0%
TGCAACAACAGGGCTTCTTG+AGG - Chr3:28890267-28890286 None:intergenic 50.0%
TGGCCTCCATCTCATGGTTT+CGG + Chr3:28891006-28891025 MsG0380013026.01.T01:intron 50.0%
! GTTGCACTGGCAAAGGAAGA+AGG - Chr3:28890885-28890904 None:intergenic 50.0%
ACAGGGTAATCCCTGGTAGC+AGG + Chr3:28891291-28891310 MsG0380013026.01.T01:intron 55.0%
CAAGGAGTTGCCTGCTACCA+GGG - Chr3:28891304-28891323 None:intergenic 55.0%
CCAACGAGATTGCTGGCAGA+TGG + Chr3:28890028-28890047 MsG0380013026.01.T01:intron 55.0%
CCATCTGCCAGCAATCTCGT+TGG - Chr3:28890031-28890050 None:intergenic 55.0%
GGAGCTAAGGTGGTTCCTTG+AGG + Chr3:28890707-28890726 MsG0380013026.01.T01:intron 55.0%
TCAAGGAGTTGCCTGCTACC+AGG - Chr3:28891305-28891324 None:intergenic 55.0%
! TGTGGTGGTTGCACTGGCAA+AGG - Chr3:28890892-28890911 None:intergenic 55.0%
AGTGCGTGGCCTCCATCTCA+TGG + Chr3:28891000-28891019 MsG0380013026.01.T01:intron 60.0%
CAACTCCTTGAGTCCCCCAC+TGG + Chr3:28891314-28891333 MsG0380013026.01.T01:intron 60.0%
GAGGCCACGCACTACGTCTT+TGG - Chr3:28890993-28891012 None:intergenic 60.0%
GGACCTAAGGTGGTCCCTTG+AGG + Chr3:28890825-28890844 MsG0380013026.01.T01:intron 60.0%
CCAGTCCAGTGGGGGACTCA+AGG - Chr3:28891322-28891341 None:intergenic 65.0%
CCTTGAGTCCCCCACTGGAC+TGG + Chr3:28891319-28891338 MsG0380013026.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 28889765 28892027 28889765 ID=MsG0380013026.01;Name=MsG0380013026.01
Chr3 mRNA 28889765 28892027 28889765 ID=MsG0380013026.01.T01;Parent=MsG0380013026.01;Name=MsG0380013026.01.T01;_AED=0.49;_eAED=0.62;_QI=0|0|0.25|1|0|0|4|0|121
Chr3 exon 28889765 28889870 28889765 ID=MsG0380013026.01.T01:exon:7236;Parent=MsG0380013026.01.T01
Chr3 exon 28890183 28890290 28890183 ID=MsG0380013026.01.T01:exon:7235;Parent=MsG0380013026.01.T01
Chr3 exon 28891643 28891734 28891643 ID=MsG0380013026.01.T01:exon:7234;Parent=MsG0380013026.01.T01
Chr3 exon 28891968 28892027 28891968 ID=MsG0380013026.01.T01:exon:7233;Parent=MsG0380013026.01.T01
Chr3 CDS 28889765 28889870 28889765 ID=MsG0380013026.01.T01:cds;Parent=MsG0380013026.01.T01
Chr3 CDS 28890183 28890290 28890183 ID=MsG0380013026.01.T01:cds;Parent=MsG0380013026.01.T01
Chr3 CDS 28891643 28891734 28891643 ID=MsG0380013026.01.T01:cds;Parent=MsG0380013026.01.T01
Chr3 CDS 28891968 28892027 28891968 ID=MsG0380013026.01.T01:cds;Parent=MsG0380013026.01.T01
Gene Sequence

>MsG0380013026.01.T01

ATGAAGCATATTGTAAAGATATTGTCACTGGTAATTGCCATCACTGCTTTATGGGTTGGCCTTCTACAAACTTCTATCATTCCTCAAAGTCATACTTGGTTGGTAGCTACCAATCTATTTTGTCGTGTCTTTAGGATGTTACGGTCTATTAATGGTTGGAGTTGGTCTGATGAATTTTCCTACTTGTCCTCAAGAAGCCCTGTTGTTGCAAAAGGGAATTTTGGATACCAAAGCTTTGGATTCACATCATTTTTGCCTTGTCATGCAAAACTGTCTAGCACATCCTGCAATGGACCATCTTTCTCAGATATTGTTGAGGCCAAGGAATATTTGAAGCAAAGGGGAGTTGATGTTAGTACCAACTGA
Protein sequence

>MsG0380013026.01.T01

MKHIVKILSLVIAITALWVGLLQTSIIPQSHTWLVATNLFCRVFRMLRSINGWSWSDEFSYLSSRSPVVAKGNFGYQSFGFTSFLPCHAKLSSTSCNGPSFSDIVEAKEYLKQRGVDVSTN*