AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013050.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013050.01.T01 MTR_3g437680 94.488 127 5 1 270 394 34 160 8.51e-81 245
MsG0380013050.01.T01 MTR_3g437680 94.488 127 5 1 270 394 34 160 8.51e-81 245
MsG0380013050.01.T01 MTR_4g109130 92.126 127 8 1 270 394 34 160 4.30e-77 236
MsG0380013050.01.T01 MTR_4g130917 88.095 126 13 1 270 393 34 159 2.17e-73 226
MsG0380013050.01.T01 MTR_5g042990 87.302 126 14 1 270 393 34 159 5.88e-73 225
MsG0380013050.01.T01 MTR_1g109320 69.939 163 32 1 40 185 4 166 2.80e-68 220
MsG0380013050.01.T01 MTR_5g042990 87.234 94 10 1 270 361 34 127 1.53e-51 169
MsG0380013050.01.T01 MTR_5g042990 80.000 105 19 1 270 372 34 138 2.11e-51 169
MsG0380013050.01.T01 MTR_4g130917 86.170 94 11 1 270 361 34 127 1.33e-50 167
MsG0380013050.01.T01 MTR_4g109130 90.278 72 5 1 270 339 34 105 4.16e-40 139
MsG0380013050.01.T01 MTR_4g112440 68.116 69 10 2 270 336 34 92 1.08e-23 94.7
MsG0380013050.01.T01 MTR_4g130907 41.304 138 50 3 242 379 15 121 4.84e-21 89.0
MsG0380013050.01.T01 MTR_5g074450 51.685 89 30 3 197 276 345 429 1.20e-15 79.0
MsG0380013050.01.T01 MTR_6g033030 66.667 51 17 0 191 241 57 107 2.99e-13 69.3
MsG0380013050.01.T01 MTR_3g448400 68.750 48 15 0 194 241 168 215 5.71e-13 68.9
MsG0380013050.01.T01 MTR_3g011980 76.744 43 10 0 197 239 43 85 3.37e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013050.01.T01 AT1G13950 88.095 126 13 1 270 393 33 158 7.61e-74 227
MsG0380013050.01.T01 AT1G69410 88.136 118 14 0 276 393 41 158 3.24e-70 218
MsG0380013050.01.T01 AT1G26630 79.839 124 23 1 270 391 33 156 1.45e-65 206
MsG0380013050.01.T01 AT1G26630 82.979 94 14 1 270 361 33 126 8.06e-49 162

Find 137 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTTACCAACTGTGTTTA+TGG 0.105412 3:+29438676 MsG0380013050.01.T01:three_prime_UTR
TCTTTGGACCAATATCTTTC+AGG 0.187453 3:-29438549 None:intergenic
AATAGTTGAAGCTAGTTCTT+TGG 0.241243 3:-29438565 None:intergenic
GCCGCCGTTGCTGCTGTTTC+CGG 0.257540 3:-29431139 None:intergenic
CGAACTTTCCAGGAGACAAC+TGG 0.289618 3:-29431259 None:intergenic
GGATGGGAGGTTGGAGGATG+GGG 0.292325 3:+29433903 MsG0380013050.01.T01:CDS
TCCTGTAGTGCCCACACTTC+AGG 0.296073 3:-29430976 None:intergenic
CTTAAATAGAAGGAACAAAT+AGG 0.308724 3:-29438592 None:intergenic
CTTTCTCGTTCAAGCTTCTC+TGG 0.313049 3:+29431305 MsG0380013050.01.T01:CDS
GCAACTCTTTCGAACTTTCC+AGG 0.317841 3:-29431269 None:intergenic
GGGATAGGAGGTAGCGGTGC+TGG 0.332551 3:+29433973 MsG0380013050.01.T01:CDS
TGTCTTATTGTTCAACCCTT+TGG 0.344496 3:+29438633 MsG0380013050.01.T01:three_prime_UTR
GTGAGTCTGCTTACTGAAAA+TGG 0.350641 3:+29436944 MsG0380013050.01.T01:CDS
GATGGGAGGTTGGAGGATGG+GGG 0.351560 3:+29433904 MsG0380013050.01.T01:CDS
GGAGTTGTTCTTCGTGGTGC+CGG 0.357822 3:+29433929 MsG0380013050.01.T01:CDS
TTCCGTGGCTTGAATCTTGC+CGG 0.360115 3:+29431396 MsG0380013050.01.T01:CDS
ATTGTTCAACCCTTTGGTTA+TGG 0.367641 3:+29438639 MsG0380013050.01.T01:three_prime_UTR
GGCGATGCCGTAACCGCCTT+TGG 0.370430 3:-29431028 None:intergenic
TTGATCGATATTTCTGAAGA+TGG 0.379975 3:+29436814 MsG0380013050.01.T01:CDS
CTTGGCATGACCATGCTTAC+CGG 0.382469 3:-29436598 None:intergenic
GAGGTCTGAGAAATCAGAAT+TGG 0.382686 3:-29430937 None:intergenic
GCTAGGTATGGTGCGGAGGA+TGG 0.387178 3:+29433886 MsG0380013050.01.T01:CDS
GAGGATGGGAGGTTGGAGGA+TGG 0.393533 3:+29433901 MsG0380013050.01.T01:CDS
AGGAAGCTTCAAGTCATCTT+TGG 0.394880 3:-29436972 None:intergenic
ACCTGAAGTGTGGGCACTAC+AGG 0.395722 3:+29430975 MsG0380013050.01.T01:CDS
AGGATGGGAGGTTGGAGGAT+GGG 0.400985 3:+29433902 MsG0380013050.01.T01:CDS
ACACATCAAACGGAATTGAT+TGG 0.407404 3:-29431365 None:intergenic
CCGTCATCCAAAGGCGGTTA+CGG 0.410119 3:+29431021 MsG0380013050.01.T01:CDS
AGGTCTGAGAAATCAGAATT+GGG 0.411022 3:-29430936 None:intergenic
ATTAATGCCCTGAAAGATAT+TGG 0.418980 3:+29438541 MsG0380013050.01.T01:CDS
ACCATGCTTACCGGTCTTTG+AGG 0.422545 3:-29436589 None:intergenic
CTTTGGACCAATATCTTTCA+GGG 0.429224 3:-29438548 None:intergenic
GGCGTTCGACTGCACGTGAC+TGG 0.431130 3:-29431061 None:intergenic
GGATAGGAGGTAGCGGTGCT+GGG 0.443437 3:+29433974 MsG0380013050.01.T01:CDS
GAGTTGTTCTTCGTGGTGCC+GGG 0.454248 3:+29433930 MsG0380013050.01.T01:CDS
TAGCGGTGCTGGGTGGTTTG+CGG 0.455867 3:+29433984 MsG0380013050.01.T01:CDS
CATGTTCCCCAGTTGTCTCC+TGG 0.457487 3:+29431251 MsG0380013050.01.T01:CDS
ATGCGTGGTACAGAGGCATC+AGG 0.458963 3:+29431209 MsG0380013050.01.T01:CDS
GTTGGAATTCTGTTTGTTTG+AGG 0.460337 3:+29433745 MsG0380013050.01.T01:CDS
CTAGGTATGGTGCGGAGGAT+GGG 0.464038 3:+29433887 MsG0380013050.01.T01:CDS
AGAGAACGAAATTGAGAAGC+TGG 0.465309 3:-29430909 None:intergenic
CATGCCAAGTGTCACTTTGT+TGG 0.465747 3:+29436612 MsG0380013050.01.T01:CDS
TGGTGCGGAGGATGGGAGGT+TGG 0.468286 3:+29433894 MsG0380013050.01.T01:CDS
CTGTTTCCGGCGAGCGACGA+TGG 0.471319 3:-29431126 None:intergenic
GAATTCTGTTTGTTTGAGGA+AGG 0.471332 3:+29433749 MsG0380013050.01.T01:CDS
CGAAATTGAGAAGCTGGAAA+AGG 0.474279 3:-29430903 None:intergenic
CAAACGGAATTGATTGGGTC+TGG 0.481809 3:-29431359 None:intergenic
CGAATCCGCCGCCATTGAAT+CGG 0.485130 3:-29431332 None:intergenic
CATCAGGTTTCGAGACAAAT+CGG 0.485714 3:+29435266 MsG0380013050.01.T01:intron
GGCGTAGGGTGTTGGTGGCT+AGG 0.485776 3:+29433869 MsG0380013050.01.T01:intron
AAACCTTGCAACACATCAAA+CGG 0.486797 3:-29431375 None:intergenic
CACATCAAACGGAATTGATT+GGG 0.491011 3:-29431364 None:intergenic
TTGCCTCGTTGCACTCTACT+CGG 0.492967 3:+29431091 MsG0380013050.01.T01:CDS
GGGGCTGGAGTTGTTCTTCG+TGG 0.495911 3:+29433923 MsG0380013050.01.T01:CDS
TCTTGTATGGCAGGTTGTTG+AGG 0.496646 3:+29436560 MsG0380013050.01.T01:intron
AGGTCAGAGTAAGGATAAAA+CGG 0.501789 3:-29431168 None:intergenic
AACCCTTTGGTTATGGACAC+TGG 0.501817 3:+29438646 MsG0380013050.01.T01:three_prime_UTR
TCAACGTACATCACAATTGT+GGG 0.508011 3:-29436682 None:intergenic
GGAAGGAAAGGAAAATTAAA+CGG 0.508887 3:+29431417 MsG0380013050.01.T01:CDS
TTGAATCTTGCCGGAAGGAA+AGG 0.510295 3:+29431405 MsG0380013050.01.T01:CDS
GTTTGAGGAAGGAGTATGAT+GGG 0.512195 3:+29433760 MsG0380013050.01.T01:CDS
TGTTTGAGGAAGGAGTATGA+TGG 0.516497 3:+29433759 MsG0380013050.01.T01:CDS
TCTCTGGAGAACCGATTCAA+TGG 0.518284 3:+29431321 MsG0380013050.01.T01:CDS
ATCAACGTACATCACAATTG+TGG 0.520978 3:-29436683 None:intergenic
TGTGTCCGTGATGTCTGCTA+TGG 0.523316 3:+29438507 MsG0380013050.01.T01:CDS
GATCTTCCATCGTCGCTCGC+CGG 0.523327 3:+29431120 MsG0380013050.01.T01:CDS
TGCGGAGGATGGGAGGTTGG+AGG 0.523643 3:+29433897 MsG0380013050.01.T01:CDS
GCCGGAAACAGCAGCAACGG+CGG 0.525054 3:+29431138 MsG0380013050.01.T01:CDS
GTGAGAATCCGAGACGGGAT+AGG 0.525160 3:+29433958 MsG0380013050.01.T01:CDS
CACGTGACTGGTGTTGTTGA+CGG 0.526070 3:-29431049 None:intergenic
GGTACAGAGGCATCAGGGTA+TGG 0.526905 3:+29431215 MsG0380013050.01.T01:CDS
AGGATAAGTCTTGGAAGCTC+CGG 0.527718 3:-29435343 None:intergenic
CGCTACCTCCTATCCCGTCT+CGG 0.529161 3:-29433966 None:intergenic
TTCTAGAGATATTCTGAGTG+TGG 0.529441 3:+29438811 MsG0380013050.01.T01:three_prime_UTR
TCTGTTCCAAGGTCAGAGTA+AGG 0.533820 3:-29431177 None:intergenic
TTTCTGGCGTAGGGTGTTGG+TGG 0.536306 3:+29433864 MsG0380013050.01.T01:intron
CTCGCCGGAAACAGCAGCAA+CGG 0.536484 3:+29431135 MsG0380013050.01.T01:CDS
TACATCACAATTGTGGGAAG+AGG 0.536885 3:-29436676 None:intergenic
AGGGTGTTGGTGGCTAGGTA+TGG 0.537796 3:+29433874 MsG0380013050.01.T01:intron
GGCTTGTTGAGGATAAGTCT+TGG 0.543298 3:-29435352 None:intergenic
CGGATAGTACCGGCTTGTTG+AGG 0.543665 3:-29435363 None:intergenic
TTCCGGCAAGATTCAAGCCA+CGG 0.545903 3:-29431398 None:intergenic
GAGTTGAATCATGTCGGACG+AGG 0.551741 3:+29435293 MsG0380013050.01.T01:CDS
ATTCCGTTTGATGTGTTGCA+AGG 0.558357 3:+29431372 MsG0380013050.01.T01:CDS
TTTGAGTCAAAAGCCGATGC+CGG 0.561371 3:+29435324 MsG0380013050.01.T01:CDS
GTGTCCGTGATGTCTGCTAT+GGG 0.564696 3:+29438508 MsG0380013050.01.T01:CDS
AGAATCCGAGACGGGATAGG+AGG 0.565045 3:+29433961 MsG0380013050.01.T01:CDS
TGGTCACTGCAGATCAAGGA+AGG 0.565385 3:+29438460 MsG0380013050.01.T01:intron
AGTCTTGGAAGCTCCGGCAT+CGG 0.567163 3:-29435337 None:intergenic
TAACTCATTCACCTGAAGTG+TGG 0.568056 3:+29430965 MsG0380013050.01.T01:CDS
GAGGTTTCAACCTCAAAGAC+CGG 0.568619 3:+29436579 MsG0380013050.01.T01:CDS
CCGTAACCGCCTTTGGATGA+CGG 0.570841 3:-29431021 None:intergenic
ACCTCAAAGACCGGTAAGCA+TGG 0.571121 3:+29436588 MsG0380013050.01.T01:CDS
GGTATGGTGCGGAGGATGGG+AGG 0.573336 3:+29433890 MsG0380013050.01.T01:CDS
AACTCATTCACCTGAAGTGT+GGG 0.573489 3:+29430966 MsG0380013050.01.T01:CDS
CTGAGTAAGCAGATTGTCAT+CGG 0.573674 3:-29436996 None:intergenic
GAACTTTCCAGGAGACAACT+GGG 0.574697 3:-29431258 None:intergenic
CGATGACAATCTGCTTACTC+AGG 0.577063 3:+29436997 MsG0380013050.01.T01:CDS
GACCAGTGTCCATAACCAAA+GGG 0.590821 3:-29438648 None:intergenic
AGATAGTGAGAATCCGAGAC+GGG 0.591253 3:+29433953 MsG0380013050.01.T01:CDS
CTCGGATTCTCACTATCTCC+CGG 0.596103 3:-29433948 None:intergenic
CGTGATGTCTGCTATGGGTG+AGG 0.597852 3:+29438513 MsG0380013050.01.T01:CDS
ACATCACAATTGTGGGAAGA+GGG 0.598510 3:-29436675 None:intergenic
GCTTGTTCTCCGTCATCCAA+AGG 0.599408 3:+29431012 MsG0380013050.01.T01:CDS
GAGAACCGATTCAATGGCGG+CGG 0.600421 3:+29431327 MsG0380013050.01.T01:CDS
CAGACATCACGGACACAACA+AGG 0.601971 3:-29438501 None:intergenic
TAGGAGGTAGCGGTGCTGGG+TGG 0.606613 3:+29433977 MsG0380013050.01.T01:CDS
GATGTGTTGCAAGGTTTCCG+TGG 0.607851 3:+29431381 MsG0380013050.01.T01:CDS
TGACCAGTGTCCATAACCAA+AGG 0.609807 3:-29438649 None:intergenic
ATGATTCATACTCTGTTCCA+AGG 0.617734 3:-29431188 None:intergenic
ATGAATCATGCGTGGTACAG+AGG 0.621493 3:+29431202 MsG0380013050.01.T01:CDS
AATATCGATCAATTGATAGT+CGG 0.622059 3:-29436803 None:intergenic
GGTGGCTAGGTATGGTGCGG+AGG 0.623470 3:+29433882 MsG0380013050.01.T01:CDS
GTGGCTTGAATCTTGCCGGA+AGG 0.627677 3:+29431400 MsG0380013050.01.T01:CDS
AGTCACGTGCAGTCGAACGC+CGG 0.631022 3:+29431063 MsG0380013050.01.T01:CDS
GTCACATCCATAAACACAGT+TGG 0.635082 3:-29438683 None:intergenic
CGAGACGGGATAGGAGGTAG+CGG 0.639488 3:+29433967 MsG0380013050.01.T01:CDS
GATAGTCGGTACGATTCACA+TGG 0.640579 3:-29436789 None:intergenic
AAGACTTATCCTCAACAAGC+CGG 0.640894 3:+29435354 MsG0380013050.01.T01:CDS
GGCACTACAGGATCTACGCA+AGG 0.641656 3:+29430987 MsG0380013050.01.T01:CDS
TGCGTGGTACAGAGGCATCA+GGG 0.645935 3:+29431210 MsG0380013050.01.T01:CDS
GATTCCAACAAAGTGACACT+TGG 0.646223 3:-29436616 None:intergenic
CTCACCCATAGCAGACATCA+CGG 0.658249 3:-29438512 None:intergenic
GGTCTGAGAAATCAGAATTG+GGG 0.660559 3:-29430935 None:intergenic
GTAAGCAGATTGTCATCGGT+AGG 0.661464 3:-29436992 None:intergenic
GTGCAACGAGGCAAACACGC+CGG 0.662081 3:-29431082 None:intergenic
GAGATAGTGAGAATCCGAGA+CGG 0.662406 3:+29433952 MsG0380013050.01.T01:CDS
CTGGAGAACCGATTCAATGG+CGG 0.681574 3:+29431324 MsG0380013050.01.T01:CDS
TGTTCTCCGTCATCCAAAGG+CGG 0.682181 3:+29431015 MsG0380013050.01.T01:CDS
ATAGTCGGTACGATTCACAT+GGG 0.694380 3:-29436788 None:intergenic
AACTTTCCAGGAGACAACTG+GGG 0.702903 3:-29431257 None:intergenic
GGAGTCGAGTTGAATCATGT+CGG 0.703426 3:+29435287 MsG0380013050.01.T01:CDS
GTTGGTGGCTAGGTATGGTG+CGG 0.708662 3:+29433879 MsG0380013050.01.T01:CDS
AACAGAGTATGAATCATGCG+TGG 0.722679 3:+29431194 MsG0380013050.01.T01:CDS
AGGTGAATGAGTTAACGCTG+AGG 0.754157 3:-29430956 None:intergenic
TAGTCGGTACGATTCACATG+GGG 0.757208 3:-29436787 None:intergenic
ATTCCGAGTAGAGTGCAACG+AGG 0.814296 3:-29431094 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGATTAAGAAAATAA+AGG - Chr3:29432854-29432873 None:intergenic 10.0%
!! AATTTGATTAAGAAAATAAA+GGG - Chr3:29432853-29432872 None:intergenic 10.0%
!!! AAAAATATTTTTGTTTTTGT+TGG - Chr3:29433007-29433026 None:intergenic 10.0%
!!! AACAAAAACAAAAATATTTT+TGG + Chr3:29433006-29433025 MsG0380013050.01.T01:intron 10.0%
!!! ATTTTATTATTTATAACCTT+TGG + Chr3:29436374-29436393 MsG0380013050.01.T01:intron 10.0%
!!! ATTTTTTATAAAAAAAACTC+GGG - Chr3:29438744-29438763 None:intergenic 10.0%
!!! TATATTTTTAGATTTTTTAG+AGG - Chr3:29431766-29431785 None:intergenic 10.0%
!!! TTGTTAAATTATTTTTGTTT+TGG + Chr3:29438770-29438789 MsG0380013050.01.T01:three_prime_UTR 10.0%
!! GTCATAAAAATAAAACAAAA+AGG - Chr3:29436739-29436758 None:intergenic 15.0%
!! TTAAAATATTAAGATGTAGA+AGG + Chr3:29437527-29437546 MsG0380013050.01.T01:intron 15.0%
!! TTGTAAGTTAAAATTAACTA+TGG - Chr3:29437574-29437593 None:intergenic 15.0%
!! TTTACAATACTAAAATTACT+TGG + Chr3:29433718-29433737 MsG0380013050.01.T01:intron 15.0%
!!! ATATTGTTTCTTTCAATTTT+TGG + Chr3:29436851-29436870 MsG0380013050.01.T01:intron 15.0%
!!! TGAAAATTGCTATAAAATTT+TGG + Chr3:29432010-29432029 MsG0380013050.01.T01:intron 15.0%
!!! TTGATTTTAAGTTTGAAAAT+GGG - Chr3:29432984-29433003 None:intergenic 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG - Chr3:29433089-29433108 None:intergenic 15.0%
!! AAATAAAGGGAAAATTACAA+TGG - Chr3:29432840-29432859 None:intergenic 20.0%
!! AACTAACGAAAATCAAAATT+TGG - Chr3:29435605-29435624 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG + Chr3:29433327-29433346 MsG0380013050.01.T01:intron 20.0%
!! AATAAAGGGAAAATTACAAT+GGG - Chr3:29432839-29432858 None:intergenic 20.0%
!! AATACTAAAATTACTTGGAT+AGG + Chr3:29433723-29433742 MsG0380013050.01.T01:intron 20.0%
!! AATTTATTGGTACTTTATCA+CGG - Chr3:29434419-29434438 None:intergenic 20.0%
!! ACTATACAAACCATAAAATT+AGG - Chr3:29436126-29436145 None:intergenic 20.0%
!! ATCAAACACAAATAAAATCA+TGG - Chr3:29435549-29435568 None:intergenic 20.0%
!! ATTTATAATCATTGTAGCTT+TGG + Chr3:29436159-29436178 MsG0380013050.01.T01:intron 20.0%
!! CCAAAGAATAAAACAATTAA+GGG - Chr3:29437186-29437205 None:intergenic 20.0%
!! CTATACAAACCATAAAATTA+GGG - Chr3:29436125-29436144 None:intergenic 20.0%
!! GAAAGTGATCTTATAAAAAT+GGG + Chr3:29433441-29433460 MsG0380013050.01.T01:intron 20.0%
!! GAAATATTGCATAAAAGAAA+TGG - Chr3:29432402-29432421 None:intergenic 20.0%
!! TATTATATAGTTGTTTGAGA+AGG + Chr3:29435820-29435839 MsG0380013050.01.T01:intron 20.0%
!! TATTATTTATAACCTTTGGA+GGG + Chr3:29436378-29436397 MsG0380013050.01.T01:intron 20.0%
!! TCTCTTGTAAGTTAAAATTA+CGG - Chr3:29437578-29437597 None:intergenic 20.0%
!! TGAAAGTGATCTTATAAAAA+TGG + Chr3:29433440-29433459 MsG0380013050.01.T01:intron 20.0%
!! TTATTATTTATAACCTTTGG+AGG + Chr3:29436377-29436396 MsG0380013050.01.T01:intron 20.0%
!!! AAAAATGCTACTTTTGTTTT+TGG + Chr3:29434797-29434816 MsG0380013050.01.T01:intron 20.0%
!!! AATCTTGCATGAATTTTAAA+TGG - Chr3:29432497-29432516 None:intergenic 20.0%
!!! AATTTGTTTGATTCAATGAT+CGG + Chr3:29436875-29436894 MsG0380013050.01.T01:intron 20.0%
!!! AGATTTAGAATGTAAAACTT+AGG + Chr3:29432512-29432531 MsG0380013050.01.T01:intron 20.0%
!!! ATACAATCACATAGAATTTT+TGG - Chr3:29432333-29432352 None:intergenic 20.0%
!!! ATATCTTTTGCTTAAATAGA+AGG - Chr3:29438605-29438624 None:intergenic 20.0%
!!! ATGATTTTATTTGTGTTTGA+TGG + Chr3:29435548-29435567 MsG0380013050.01.T01:intron 20.0%
!!! ATTGAATGTTGTTATTTTGT+AGG + Chr3:29436922-29436941 MsG0380013050.01.T01:intron 20.0%
!!! ATTGTTTTAGTGTTTGTTAA+AGG + Chr3:29435986-29436005 MsG0380013050.01.T01:intron 20.0%
!!! CATAAACTAAAATCCATTTT+AGG - Chr3:29437248-29437267 None:intergenic 20.0%
!!! CTTATGCAAATTTAATTTCT+TGG + Chr3:29432557-29432576 MsG0380013050.01.T01:intron 20.0%
!!! CTTTAATTCTTCTTTTTGTT+TGG + Chr3:29431714-29431733 MsG0380013050.01.T01:intron 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG - Chr3:29433327-29433346 None:intergenic 20.0%
!!! GTTGATTTTAAGTTTGAAAA+TGG - Chr3:29432985-29433004 None:intergenic 20.0%
!!! TCTTTTTCATAATAAACCTT+GGG + Chr3:29432805-29432824 MsG0380013050.01.T01:intron 20.0%
!!! TGATAAAGTACCAATAAATT+TGG + Chr3:29434419-29434438 MsG0380013050.01.T01:intron 20.0%
!!! TGTAGTTTAACTTTTTCTTA+TGG + Chr3:29437601-29437620 MsG0380013050.01.T01:intron 20.0%
! AAAAAAATAGACACCTTCAA+AGG - Chr3:29434382-29434401 None:intergenic 25.0%
! AAAAAATAGACACCTTCAAA+GGG - Chr3:29434381-29434400 None:intergenic 25.0%
! AAAACACAAGATGGAAATAA+TGG - Chr3:29432455-29432474 None:intergenic 25.0%
! AAACACAAGATGGAAATAAT+GGG - Chr3:29432454-29432473 None:intergenic 25.0%
! AAAGAAATTAACAACACACT+AGG - Chr3:29431606-29431625 None:intergenic 25.0%
! AAATTGAATAAAACCTTGCA+GGG - Chr3:29435420-29435439 None:intergenic 25.0%
! AAATTTACTTATTACACAGG+TGG + Chr3:29434618-29434637 MsG0380013050.01.T01:intron 25.0%
! AAGAAATTAACAACACACTA+GGG - Chr3:29431605-29431624 None:intergenic 25.0%
! AAGAACACTAAATCAAGAAA+AGG - Chr3:29431818-29431837 None:intergenic 25.0%
! AATGATAAGTCTCAATCTTA+AGG - Chr3:29432107-29432126 None:intergenic 25.0%
! AATTAACTATGGCAAAAGAA+AGG - Chr3:29437563-29437582 None:intergenic 25.0%
! AATTAGTCATTTGCAAAATG+TGG - Chr3:29432901-29432920 None:intergenic 25.0%
! ACCAAATTTACTTATTACAC+AGG + Chr3:29434615-29434634 MsG0380013050.01.T01:intron 25.0%
! ACCTGTGTAATAAGTAAATT+TGG - Chr3:29434619-29434638 None:intergenic 25.0%
! ACTTGAAAACTAGAAATAAG+TGG + Chr3:29437387-29437406 MsG0380013050.01.T01:intron 25.0%
! ATAGTAGGTTATTAAGAATC+AGG + Chr3:29434712-29434731 MsG0380013050.01.T01:intron 25.0%
! ATTAACTATGGCAAAAGAAA+GGG - Chr3:29437562-29437581 None:intergenic 25.0%
! CGCGCAATATAAATATTTAA+TGG + Chr3:29433623-29433642 MsG0380013050.01.T01:intron 25.0%
! CTTAAATAGAAGGAACAAAT+AGG - Chr3:29438595-29438614 None:intergenic 25.0%
! GATGAAGTTAATAACATGTT+TGG + Chr3:29437282-29437301 MsG0380013050.01.T01:intron 25.0%
! GCCAAAGAATAAAACAATTA+AGG - Chr3:29437187-29437206 None:intergenic 25.0%
! GTAAACAAAACAAAACAACA+AGG - Chr3:29435769-29435788 None:intergenic 25.0%
! TAAGCAAAGAAAAAACAATG+AGG - Chr3:29431654-29431673 None:intergenic 25.0%
! TTCAATACTCATTCTCTTAT+TGG + Chr3:29437691-29437710 MsG0380013050.01.T01:intron 25.0%
! TTCTTGATTTAGTGTTCTTA+TGG + Chr3:29431819-29431838 MsG0380013050.01.T01:intron 25.0%
!! AAGTATGTAACAATTTCTAG+AGG - Chr3:29431697-29431716 None:intergenic 25.0%
!! AATATCGATCAATTGATAGT+CGG - Chr3:29436806-29436825 None:intergenic 25.0%
!! AATTGTGACATTAGGATTTT+TGG - Chr3:29436340-29436359 None:intergenic 25.0%
!! AATTTAATTTCTTGGCAAAG+AGG + Chr3:29432565-29432584 MsG0380013050.01.T01:intron 25.0%
!! ATGGATTTTCGTAGTTATTT+TGG + Chr3:29436420-29436439 MsG0380013050.01.T01:intron 25.0%
!! CATCAAAAACCCTAATTTTA+TGG + Chr3:29436113-29436132 MsG0380013050.01.T01:intron 25.0%
!! CTTGAAATGGTAAAAAGTAT+AGG - Chr3:29432294-29432313 None:intergenic 25.0%
!! CTTTAACTGAGACTTTTTAT+CGG + Chr3:29438349-29438368 MsG0380013050.01.T01:intron 25.0%
!! GTTTTTATAAGCACTTGAAA+TGG - Chr3:29432307-29432326 None:intergenic 25.0%
!! TATACAGTATACGTTATTTC+AGG + Chr3:29435125-29435144 MsG0380013050.01.T01:intron 25.0%
!! TGCATGAATTTTAAATGGTA+AGG - Chr3:29432492-29432511 None:intergenic 25.0%
!! TTTTACAAAACTTCAATGAG+AGG - Chr3:29437324-29437343 None:intergenic 25.0%
!!! AGGGTTTGATTGTTATTTAT+AGG + Chr3:29435500-29435519 MsG0380013050.01.T01:intron 25.0%
!!! ATATTTTTGGAAGAGAACTA+CGG + Chr3:29433019-29433038 MsG0380013050.01.T01:intron 25.0%
!!! ATCACTTATCATTTTTTTCG+AGG - Chr3:29435164-29435183 None:intergenic 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG - Chr3:29433322-29433341 None:intergenic 25.0%
!!! CAAGAAAGTGTTTAACAAAT+TGG - Chr3:29432183-29432202 None:intergenic 25.0%
!!! CCCTTAATTGTTTTATTCTT+TGG + Chr3:29437183-29437202 MsG0380013050.01.T01:intron 25.0%
!!! CTCTTTTTCATAATAAACCT+TGG + Chr3:29432804-29432823 MsG0380013050.01.T01:intron 25.0%
!!! CTTAGCTTTAGAACATTTTT+TGG + Chr3:29437071-29437090 MsG0380013050.01.T01:intron 25.0%
!!! CTTTATCTGAGATGTTTTAT+CGG + Chr3:29438064-29438083 MsG0380013050.01.T01:intron 25.0%
!!! GATGTTGTTCACATTTTTTT+TGG - Chr3:29432777-29432796 None:intergenic 25.0%
!!! GGGTTTGATTGTTATTTATA+GGG + Chr3:29435501-29435520 MsG0380013050.01.T01:intron 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG - Chr3:29433328-29433347 None:intergenic 25.0%
!!! GTATTTTTTGATAGTCTCTT+CGG + Chr3:29434896-29434915 MsG0380013050.01.T01:intron 25.0%
!!! TATAAAATTTTGGTGTCTCT+CGG + Chr3:29432020-29432039 MsG0380013050.01.T01:intron 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG - Chr3:29433323-29433342 None:intergenic 25.0%
!!! TATTGTATTGTTGTTTGACA+AGG + Chr3:29435659-29435678 MsG0380013050.01.T01:intron 25.0%
!!! TCATTTTTTTCGAGGTATAT+TGG - Chr3:29435156-29435175 None:intergenic 25.0%
!!! TTTGACAAGGTTTTAAATTG+AGG + Chr3:29435672-29435691 MsG0380013050.01.T01:intron 25.0%
!!! TTTGAGAAGGTTTTAAAATG+TGG + Chr3:29435833-29435852 MsG0380013050.01.T01:intron 25.0%
!!! TTTTATTCTTTGGCTCAAAT+TGG + Chr3:29437193-29437212 MsG0380013050.01.T01:intron 25.0%
AAATTAAAGACGGTTCCTAT+AGG + Chr3:29433209-29433228 MsG0380013050.01.T01:intron 30.0%
AACACAAGATGGAAATAATG+GGG - Chr3:29432453-29432472 None:intergenic 30.0%
AACATAAGGAACACTCTAAA+AGG - Chr3:29435922-29435941 None:intergenic 30.0%
AAGCAAGCATGGATTTAATT+TGG + Chr3:29434344-29434363 MsG0380013050.01.T01:intron 30.0%
AATCGATGATGATTCTGATA+TGG - Chr3:29437163-29437182 None:intergenic 30.0%
ACAGTACAAATTGTGACATT+AGG - Chr3:29436348-29436367 None:intergenic 30.0%
ACATTTATCCCTACATTTCA+AGG - Chr3:29431976-29431995 None:intergenic 30.0%
ACATTTCAAGGCAAAAACAA+AGG - Chr3:29431964-29431983 None:intergenic 30.0%
AGAAATTAACAACACACTAG+GGG - Chr3:29431604-29431623 None:intergenic 30.0%
AGACAGAACAAAACAACATA+AGG - Chr3:29435936-29435955 None:intergenic 30.0%
AGAGTTTAACAATGCTTTGT+TGG + Chr3:29433803-29433822 MsG0380013050.01.T01:intron 30.0%
AGAGTTTCTAAGTGAAGAAT+TGG - Chr3:29433135-29433154 None:intergenic 30.0%
ATACAAAAGACTCAATGAAC+AGG - Chr3:29438294-29438313 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+TGG + Chr3:29433227-29433246 MsG0380013050.01.T01:intron 30.0%
ATTAATGCCCTGAAAGATAT+TGG + Chr3:29438541-29438560 MsG0380013050.01.T01:CDS 30.0%
CAATAAAACATCTCAGTTAG+TGG - Chr3:29438163-29438182 None:intergenic 30.0%
CAATAAAACATCTCAGTTTG+AGG - Chr3:29438036-29438055 None:intergenic 30.0%
CAGAATGTTCTCAAATCATA+CGG + Chr3:29437485-29437504 MsG0380013050.01.T01:intron 30.0%
CATGAGATTATGAAATTGTG+AGG - Chr3:29432927-29432946 None:intergenic 30.0%
CATTTCAAGGCAAAAACAAA+GGG - Chr3:29431963-29431982 None:intergenic 30.0%
CGATAAAAAGTCTCAGTTAA+AGG - Chr3:29438351-29438370 None:intergenic 30.0%
CGATAAAACATCTCAGATAA+AGG - Chr3:29438066-29438085 None:intergenic 30.0%
CTAAAATTACTTGGATAGGT+TGG + Chr3:29433727-29433746 MsG0380013050.01.T01:intron 30.0%
GAAATTGAATAAAACCTTGC+AGG - Chr3:29435421-29435440 None:intergenic 30.0%
GAAGCTAAAAAAACACAAGA+TGG - Chr3:29432464-29432483 None:intergenic 30.0%
GACAAAAATGCATGAAATGA+TGG - Chr3:29432424-29432443 None:intergenic 30.0%
GATACAAAGAATCAATGAAC+AGG - Chr3:29438422-29438441 None:intergenic 30.0%
GATTCCATCTAGCATATATT+TGG - Chr3:29432221-29432240 None:intergenic 30.0%
GCATGTTTAGATGTATGTTT+AGG + Chr3:29432699-29432718 MsG0380013050.01.T01:intron 30.0%
GGAAGGAAAGGAAAATTAAA+CGG + Chr3:29431417-29431436 MsG0380013050.01.T01:CDS 30.0%
GTAAGTTAAAATTACGGCAT+AGG - Chr3:29437854-29437873 None:intergenic 30.0%
GTATGTTTAGAAGAATGTCT+AGG + Chr3:29432725-29432744 MsG0380013050.01.T01:intron 30.0%
GTTCTTTCCTTCAACTTATA+TGG + Chr3:29434655-29434674 MsG0380013050.01.T01:intron 30.0%
TAAAATTACGGCATAGGAAA+AGG - Chr3:29437848-29437867 None:intergenic 30.0%
TAAAGACATGTGCATTCATA+TGG - Chr3:29435032-29435051 None:intergenic 30.0%
TAACGACTATAGTATCCTAT+AGG - Chr3:29433227-29433246 None:intergenic 30.0%
TAATGTCACAATTTGTACTG+TGG + Chr3:29436347-29436366 MsG0380013050.01.T01:intron 30.0%
TAGGATACTATAGTCGTTAT+GGG + Chr3:29433228-29433247 MsG0380013050.01.T01:intron 30.0%
TCAACAACATCAATTAATCG+CGG - Chr3:29436084-29436103 None:intergenic 30.0%
TCTAATTGTGGCTTAAATCA+TGG - Chr3:29437771-29437790 None:intergenic 30.0%
TGATATGGAAAACAAGATTC+AGG - Chr3:29437148-29437167 None:intergenic 30.0%
TGTAGAATGAACACAATAGT+AGG + Chr3:29434697-29434716 MsG0380013050.01.T01:intron 30.0%
TTCTTCACTTAGAAACTCTT+AGG + Chr3:29433136-29433155 MsG0380013050.01.T01:intron 30.0%
TTTCTAAGTGAAGAATTGGA+GGG - Chr3:29433131-29433150 None:intergenic 30.0%
! AAAGAAGCCATATAAGTTGA+AGG - Chr3:29434665-29434684 None:intergenic 30.0%
! AATAGTTGAAGCTAGTTCTT+TGG - Chr3:29438568-29438587 None:intergenic 30.0%
! ACATAAGGAACACTCTAAAA+GGG - Chr3:29435921-29435940 None:intergenic 30.0%
! AGTTTAACAATGCTTTGTTG+GGG + Chr3:29433805-29433824 MsG0380013050.01.T01:intron 30.0%
! CTAATTGGTCTCTAATACTT+TGG + Chr3:29432044-29432063 MsG0380013050.01.T01:intron 30.0%
! GAGTTTAACAATGCTTTGTT+GGG + Chr3:29433804-29433823 MsG0380013050.01.T01:intron 30.0%
! TACGTTTGAACCTTTTAAAC+CGG - Chr3:29433349-29433368 None:intergenic 30.0%
! TTCTAGCTATATACCTAAAG+TGG - Chr3:29432676-29432695 None:intergenic 30.0%
! TTGATCGATATTTCTGAAGA+TGG + Chr3:29436814-29436833 MsG0380013050.01.T01:CDS 30.0%
!! AGTGTTTTATCTTGGTTTTC+GGG - Chr3:29433386-29433405 None:intergenic 30.0%
!! AGTTTGTCTCATTTTTCTTG+TGG + Chr3:29431931-29431950 MsG0380013050.01.T01:intron 30.0%
!! GAGTGTTTTATCTTGGTTTT+CGG - Chr3:29433387-29433406 None:intergenic 30.0%
!! GTTTAATTTTCCTTTCCTTC+CGG - Chr3:29431418-29431437 None:intergenic 30.0%
!! TAACGATGTAACCATTTTTG+CGG - Chr3:29435386-29435405 None:intergenic 30.0%
!! TAAGATATCACCGGTTTAAA+AGG + Chr3:29433336-29433355 MsG0380013050.01.T01:intron 30.0%
!! TAATAACATGTTTGGTGTGA+GGG + Chr3:29437290-29437309 MsG0380013050.01.T01:intron 30.0%
!! TGTTTTTGCCTTGAAATGTA+GGG + Chr3:29431965-29431984 MsG0380013050.01.T01:intron 30.0%
!! TTAATAACATGTTTGGTGTG+AGG + Chr3:29437289-29437308 MsG0380013050.01.T01:intron 30.0%
!! TTTTGAAGAATGAGAGAAAG+AGG - Chr3:29432959-29432978 None:intergenic 30.0%
!!! AAAGAGAGAGTGTTTTATCT+TGG - Chr3:29433394-29433413 None:intergenic 30.0%
!!! AAGGTGTCTATTTTTTTTCG+TGG + Chr3:29434385-29434404 MsG0380013050.01.T01:intron 30.0%
!!! AGAAGGTTTTAAAATGTGGT+AGG + Chr3:29435837-29435856 MsG0380013050.01.T01:intron 30.0%
!!! ATGTTGTTTTGTTCTGTCTT+AGG + Chr3:29435937-29435956 MsG0380013050.01.T01:intron 30.0%
!!! GAAGTTAGTTTTAACCTTTG+AGG + Chr3:29437636-29437655 MsG0380013050.01.T01:intron 30.0%
!!! GAGTTTGAGATGCTTTATTT+TGG + Chr3:29438108-29438127 MsG0380013050.01.T01:intron 30.0%
!!! TGTTGTTTTGTTCTGTCTTA+GGG + Chr3:29435938-29435957 MsG0380013050.01.T01:intron 30.0%
!!! TTGTTTTTGCCTTGAAATGT+AGG + Chr3:29431964-29431983 MsG0380013050.01.T01:intron 30.0%
!!! TTTTGTGCGTTTGTTACTTT+TGG + Chr3:29431881-29431900 MsG0380013050.01.T01:intron 30.0%
AAACCTTGCAACACATCAAA+CGG - Chr3:29431378-29431397 None:intergenic 35.0%
AAATCATACGGCCTTAAAAG+AGG + Chr3:29437497-29437516 MsG0380013050.01.T01:intron 35.0%
AAGTAAAGTCATACTCCTTC+TGG + Chr3:29434762-29434781 MsG0380013050.01.T01:intron 35.0%
AATCATACGGCCTTAAAAGA+GGG + Chr3:29437498-29437517 MsG0380013050.01.T01:intron 35.0%
ACACATCAAACGGAATTGAT+TGG - Chr3:29431368-29431387 None:intergenic 35.0%
ACTACATGATGTTTCATTGC+AGG + Chr3:29434219-29434238 MsG0380013050.01.T01:intron 35.0%
AGGTCAGAGTAAGGATAAAA+CGG - Chr3:29431171-29431190 None:intergenic 35.0%
AGGTCTGAGAAATCAGAATT+GGG - Chr3:29430939-29430958 None:intergenic 35.0%
AGTCTTACCAACTGTGTTTA+TGG + Chr3:29438676-29438695 MsG0380013050.01.T01:three_prime_UTR 35.0%
AGTGTTTGAAAGGATTTGTG+TGG + Chr3:29436183-29436202 MsG0380013050.01.T01:intron 35.0%
ATCAACGTACATCACAATTG+TGG - Chr3:29436686-29436705 None:intergenic 35.0%
ATCAAGAAAAGGACCACAAT+CGG - Chr3:29431807-29431826 None:intergenic 35.0%
ATCTCAAACTCAGAACTTAG+AGG - Chr3:29438099-29438118 None:intergenic 35.0%
ATGATTCATACTCTGTTCCA+AGG - Chr3:29431191-29431210 None:intergenic 35.0%
ATTGTGATGTACGTTGATGT+TGG + Chr3:29436688-29436707 MsG0380013050.01.T01:intron 35.0%
ATTGTTCAACCCTTTGGTTA+TGG + Chr3:29438639-29438658 MsG0380013050.01.T01:three_prime_UTR 35.0%
CAACACTCACTTTCTAATTG+TGG - Chr3:29437783-29437802 None:intergenic 35.0%
CAATAAAACGTCTCAGTTAG+AGG - Chr3:29438193-29438212 None:intergenic 35.0%
CACAATTAGAAAGTGAGTGT+TGG + Chr3:29437781-29437800 MsG0380013050.01.T01:intron 35.0%
CACATCAAACGGAATTGATT+GGG - Chr3:29431367-29431386 None:intergenic 35.0%
CACTCCAAATATATGCTAGA+TGG + Chr3:29432214-29432233 MsG0380013050.01.T01:intron 35.0%
CATACCCTAGATACATTCTA+TGG - Chr3:29432591-29432610 None:intergenic 35.0%
CATGTCATAAACACCATGAA+CGG - Chr3:29434296-29434315 None:intergenic 35.0%
CTTTGGACCAATATCTTTCA+GGG - Chr3:29438551-29438570 None:intergenic 35.0%
GAAATTAACAACACACTAGG+GGG - Chr3:29431603-29431622 None:intergenic 35.0%
GAATTCTGTTTGTTTGAGGA+AGG + Chr3:29433749-29433768 MsG0380013050.01.T01:CDS 35.0%
GATTCTGTGATTGATGTGTT+TGG + Chr3:29436531-29436550 MsG0380013050.01.T01:intron 35.0%
GTTGGAATTCTGTTTGTTTG+AGG + Chr3:29433745-29433764 MsG0380013050.01.T01:CDS 35.0%
GTTGTGTCTGTTTGATATTG+TGG + Chr3:29436025-29436044 MsG0380013050.01.T01:intron 35.0%
GTTTCTAAGTGAAGAATTGG+AGG - Chr3:29433132-29433151 None:intergenic 35.0%
TAACTTTGGTTGTGTTGGAA+TGG + Chr3:29436401-29436420 MsG0380013050.01.T01:intron 35.0%
TAGGAGTTCTTAGCCTAAAA+TGG + Chr3:29437232-29437251 MsG0380013050.01.T01:intron 35.0%
TATATAAATTCCCCCTCTCT+TGG + Chr3:29435199-29435218 MsG0380013050.01.T01:intron 35.0%
TCAACGTACATCACAATTGT+GGG - Chr3:29436685-29436704 None:intergenic 35.0%
TCTAATGCCCAAACACATAA+GGG - Chr3:29434846-29434865 None:intergenic 35.0%
TCTTTGGACCAATATCTTTC+AGG - Chr3:29438552-29438571 None:intergenic 35.0%
TGGTCTCTAATACTTTGGTT+TGG + Chr3:29432049-29432068 MsG0380013050.01.T01:intron 35.0%
TTTGGAAATGAGTTCCACTT+AGG - Chr3:29437738-29437757 None:intergenic 35.0%
! AAAGCTAAGCATACTTTTGC+AGG - Chr3:29437060-29437079 None:intergenic 35.0%
! AGTGGATAGTAATGGTTTTC+TGG + Chr3:29433848-29433867 MsG0380013050.01.T01:intron 35.0%
! CACAATATCTTCGAGCTTTT+TGG - Chr3:29436655-29436674 None:intergenic 35.0%
! CGTTTGTTAGTGGATAGTAA+TGG + Chr3:29433840-29433859 MsG0380013050.01.T01:intron 35.0%
! GAGTAGTAATTTTGGACTTG+TGG + Chr3:29436211-29436230 MsG0380013050.01.T01:intron 35.0%
! GGAATCTACTGCTTTGTTAA+TGG + Chr3:29437026-29437045 MsG0380013050.01.T01:intron 35.0%
! GGTCTCTAATACTTTGGTTT+GGG + Chr3:29432050-29432069 MsG0380013050.01.T01:intron 35.0%
! GTATCTAGGGTATGATGTAA+AGG + Chr3:29432597-29432616 MsG0380013050.01.T01:intron 35.0%
! TGGTTCAACTTCTAGCTAAT+AGG + Chr3:29437213-29437232 MsG0380013050.01.T01:intron 35.0%
! TGTCTTATTGTTCAACCCTT+TGG + Chr3:29438633-29438652 MsG0380013050.01.T01:three_prime_UTR 35.0%
! TGTTGTATTGTGCTGTTGTA+TGG + Chr3:29436292-29436311 MsG0380013050.01.T01:intron 35.0%
! TGTTTGGATGGATTCTTGTA+TGG + Chr3:29436547-29436566 MsG0380013050.01.T01:intron 35.0%
! TTAAGACACTCCCTCTTTTA+AGG - Chr3:29437511-29437530 None:intergenic 35.0%
! TTATGCGGAATTGATAACCA+CGG - Chr3:29431549-29431568 None:intergenic 35.0%
! TTGTTTCTTGTATCCGATTG+TGG + Chr3:29431791-29431810 MsG0380013050.01.T01:intron 35.0%
! TTTTATCCTTACTCTGACCT+TGG + Chr3:29431171-29431190 MsG0380013050.01.T01:CDS 35.0%
!! GGATTTAATTTGGCATAACC+AGG + Chr3:29434354-29434373 MsG0380013050.01.T01:intron 35.0%
!! TAGCTTTGGTAGTGTTTGAA+AGG + Chr3:29436173-29436192 MsG0380013050.01.T01:intron 35.0%
!! TGGTCTTGGAGTAGTAATTT+TGG + Chr3:29436203-29436222 MsG0380013050.01.T01:intron 35.0%
!! TTAGTAGAACCCTTTTAGAG+TGG + Chr3:29435742-29435761 MsG0380013050.01.T01:intron 35.0%
!! TTTCTGTGTTTTTGTCTCCT+AGG + Chr3:29436762-29436781 MsG0380013050.01.T01:intron 35.0%
!!! GTGCTTGTTTTGAACTTTGA+TGG + Chr3:29436501-29436520 MsG0380013050.01.T01:intron 35.0%
!!! GTGTCTATTTTTTTTCGTGG+AGG + Chr3:29434388-29434407 MsG0380013050.01.T01:intron 35.0%
AAAAAAAACTCGGGACAGCA+TGG - Chr3:29438735-29438754 None:intergenic 40.0%
AAAGACAAGGAAAGTGGTCA+CGG - Chr3:29434086-29434105 None:intergenic 40.0%
AACAGAGTATGAATCATGCG+TGG + Chr3:29431194-29431213 MsG0380013050.01.T01:CDS 40.0%
AACTCATTCACCTGAAGTGT+GGG + Chr3:29430966-29430985 MsG0380013050.01.T01:CDS 40.0%
AAGACTTATCCTCAACAAGC+CGG + Chr3:29435354-29435373 MsG0380013050.01.T01:CDS 40.0%
AATCATGGTGTCTCACACTT+TGG - Chr3:29437756-29437775 None:intergenic 40.0%
ACAACAAGGACCACTCTAAA+AGG - Chr3:29435755-29435774 None:intergenic 40.0%
ACATCACAATTGTGGGAAGA+GGG - Chr3:29436678-29436697 None:intergenic 40.0%
ACGGTTCAGTTTCAAGAGAA+TGG + Chr3:29431436-29431455 MsG0380013050.01.T01:intron 40.0%
AGAGAACGAAATTGAGAAGC+TGG - Chr3:29430912-29430931 None:intergenic 40.0%
AGAGGCCATAGAATGTATCT+AGG + Chr3:29432583-29432602 MsG0380013050.01.T01:intron 40.0%
AGCATCTCAAACTCAGAACT+TGG - Chr3:29438102-29438121 None:intergenic 40.0%
AGGAACATAGAACACACAAG+AGG - Chr3:29432274-29432293 None:intergenic 40.0%
AGGAAGCTTCAAGTCATCTT+TGG - Chr3:29436975-29436994 None:intergenic 40.0%
AGGACACTACTTCTGATATG+TGG + Chr3:29434239-29434258 MsG0380013050.01.T01:intron 40.0%
AGTGACCAAATCTCAATCAG+AGG - Chr3:29438448-29438467 None:intergenic 40.0%
ATAGTCGGTACGATTCACAT+GGG - Chr3:29436791-29436810 None:intergenic 40.0%
ATCACACACTCTGCGAAATT+AGG - Chr3:29435876-29435895 None:intergenic 40.0%
ATCGGTGTATTGTTCCTCTA+AGG + Chr3:29438367-29438386 MsG0380013050.01.T01:intron 40.0%
ATCTCAAACTCAGAACTTGG+AGG - Chr3:29438256-29438275 None:intergenic 40.0%
ATCTCAAACTCAGACCTTAG+AGG - Chr3:29438384-29438403 None:intergenic 40.0%
ATCTGCTTACTCAGGTTTGT+AGG + Chr3:29437005-29437024 MsG0380013050.01.T01:intron 40.0%
ATTCCGTTTGATGTGTTGCA+AGG + Chr3:29431372-29431391 MsG0380013050.01.T01:CDS 40.0%
CAAAACATTCTCCTTAGCAC+AGG - Chr3:29434927-29434946 None:intergenic 40.0%
CATCAGGTTTCGAGACAAAT+CGG + Chr3:29435266-29435285 MsG0380013050.01.T01:intron 40.0%
CCAATAAATTTGGCAACTCG+TGG + Chr3:29434429-29434448 MsG0380013050.01.T01:intron 40.0%
CCACGAGTTGCCAAATTTAT+TGG - Chr3:29434432-29434451 None:intergenic 40.0%
CGAAATTGAGAAGCTGGAAA+AGG - Chr3:29430906-29430925 None:intergenic 40.0%
CTAATGCCCAAACACATAAG+GGG - Chr3:29434845-29434864 None:intergenic 40.0%
CTCTAACTGAGACGTTGTAT+CGG + Chr3:29438221-29438240 MsG0380013050.01.T01:intron 40.0%
CTGAGTAAGCAGATTGTCAT+CGG - Chr3:29436999-29437018 None:intergenic 40.0%
CTGTGATTGATGTGTTTGGA+TGG + Chr3:29436535-29436554 MsG0380013050.01.T01:intron 40.0%
CTTTCCTTGTCTTTACGATC+TGG + Chr3:29434092-29434111 MsG0380013050.01.T01:intron 40.0%
GAAAGAGTCTAAGTCGAATG+CGG + Chr3:29436049-29436068 MsG0380013050.01.T01:intron 40.0%
GAAATGAGTTCCACTTAGGT+GGG - Chr3:29437734-29437753 None:intergenic 40.0%
GAGGCCATAGAATGTATCTA+GGG + Chr3:29432584-29432603 MsG0380013050.01.T01:intron 40.0%
GAGGTCTGAGAAATCAGAAT+TGG - Chr3:29430940-29430959 None:intergenic 40.0%
GATCGTAAAGACAAGGAAAG+TGG - Chr3:29434092-29434111 None:intergenic 40.0%
GATTCCAACAAAGTGACACT+TGG - Chr3:29436619-29436638 None:intergenic 40.0%
GCACGCGTAGAAATTAAAGA+CGG + Chr3:29433199-29433218 MsG0380013050.01.T01:intron 40.0%
GCATGACTAGCATAACATTG+TGG - Chr3:29435010-29435029 None:intergenic 40.0%
GGGTATGATGTAAAGGACAA+TGG + Chr3:29432604-29432623 MsG0380013050.01.T01:intron 40.0%
GGTCTGAGAAATCAGAATTG+GGG - Chr3:29430938-29430957 None:intergenic 40.0%
GTCACAATTTGTACTGTGGT+TGG + Chr3:29436351-29436370 MsG0380013050.01.T01:intron 40.0%
GTCACATCCATAAACACAGT+TGG - Chr3:29438686-29438705 None:intergenic 40.0%
GTCTAATGCCCAAACACATA+AGG - Chr3:29434847-29434866 None:intergenic 40.0%
GTGAGTCTGCTTACTGAAAA+TGG + Chr3:29436944-29436963 MsG0380013050.01.T01:CDS 40.0%
GTGGATTTGATCCCTTAAAC+GGG + Chr3:29433041-29433060 MsG0380013050.01.T01:intron 40.0%
TAAAGTCATACTCCTTCTGG+TGG + Chr3:29434765-29434784 MsG0380013050.01.T01:intron 40.0%
TAACTCATTCACCTGAAGTG+TGG + Chr3:29430965-29430984 MsG0380013050.01.T01:CDS 40.0%
TAATTTCGCAGAGTGTGTGA+TGG + Chr3:29435875-29435894 MsG0380013050.01.T01:intron 40.0%
TACATCACAATTGTGGGAAG+AGG - Chr3:29436679-29436698 None:intergenic 40.0%
TATCAAAAATCGTCCCTGCA+AGG + Chr3:29435404-29435423 MsG0380013050.01.T01:intron 40.0%
TCACTCCTCTGATTGAGATT+TGG + Chr3:29438440-29438459 MsG0380013050.01.T01:intron 40.0%
TCTACCTGCATTCATCAGAT+TGG + Chr3:29431478-29431497 MsG0380013050.01.T01:intron 40.0%
TGAAAGGATTTGTGTGGTCT+TGG + Chr3:29436189-29436208 MsG0380013050.01.T01:intron 40.0%
TGCGATCCCTTGATATTGTA+GGG + Chr3:29435701-29435720 MsG0380013050.01.T01:intron 40.0%
TTCATAATCTCATGCCCTTG+AGG + Chr3:29432933-29432952 MsG0380013050.01.T01:intron 40.0%
TTGAGTCCCCTTATGTGTTT+GGG + Chr3:29434836-29434855 MsG0380013050.01.T01:intron 40.0%
TTGCGATCCCTTGATATTGT+AGG + Chr3:29435700-29435719 MsG0380013050.01.T01:intron 40.0%
! ACAATGCTTTGTTGGGGAAA+TGG + Chr3:29433811-29433830 MsG0380013050.01.T01:intron 40.0%
! ATCAAGGAAGGTTTTGCTGA+GGG + Chr3:29438472-29438491 MsG0380013050.01.T01:CDS 40.0%
! CAACAAGGACCACTCTAAAA+GGG - Chr3:29435754-29435773 None:intergenic 40.0%
! CTACTTTCTGGTGAGATTGT+TGG + Chr3:29434043-29434062 MsG0380013050.01.T01:intron 40.0%
! CTGTTGTATGGCTAGGTTTT+AGG + Chr3:29436304-29436323 MsG0380013050.01.T01:intron 40.0%
! GAGTTTGAGATGCTCTATTG+TGG + Chr3:29438265-29438284 MsG0380013050.01.T01:intron 40.0%
! GATGGAAATAATGGGGTTAG+TGG - Chr3:29432446-29432465 None:intergenic 40.0%
! GGTGGATTTGATCCCTTAAA+CGG + Chr3:29433040-29433059 MsG0380013050.01.T01:intron 40.0%
! GTTTGAGGAAGGAGTATGAT+GGG + Chr3:29433760-29433779 MsG0380013050.01.T01:CDS 40.0%
! TAACCTTTGGAGGGTAACTT+TGG + Chr3:29436387-29436406 MsG0380013050.01.T01:intron 40.0%
! TATTGTGCTGTTGTATGGCT+AGG + Chr3:29436297-29436316 MsG0380013050.01.T01:intron 40.0%
! TGTTTGAGGAAGGAGTATGA+TGG + Chr3:29433759-29433778 MsG0380013050.01.T01:CDS 40.0%
!! ACAATGGGATTTTGATCCCA+AGG - Chr3:29432824-29432843 None:intergenic 40.0%
!! ACCATTTTTGCGGATAGTAC+CGG - Chr3:29435376-29435395 None:intergenic 40.0%
!! AGTAATGGTTTTCTGGCGTA+GGG + Chr3:29433855-29433874 MsG0380013050.01.T01:intron 40.0%
!! GTGCTTGTTTTCATCTTCGA+TGG + Chr3:29436459-29436478 MsG0380013050.01.T01:intron 40.0%
!! TAGTAATGGTTTTCTGGCGT+AGG + Chr3:29433854-29433873 MsG0380013050.01.T01:intron 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG + Chr3:29433022-29433041 MsG0380013050.01.T01:intron 40.0%
!!! AGCATGGATTGGTTTTGATG+TGG + Chr3:29434563-29434582 MsG0380013050.01.T01:intron 40.0%
!!! ATGGATTGGTTTTGATGTGG+TGG + Chr3:29434566-29434585 MsG0380013050.01.T01:intron 40.0%
!!! GGAGGGAAACGAATGTTTTT+TGG - Chr3:29433114-29433133 None:intergenic 40.0%
!!! TTGTTTTTGGCACTCATCTG+TGG + Chr3:29434810-29434829 MsG0380013050.01.T01:intron 40.0%
AACCCTTTGGTTATGGACAC+TGG + Chr3:29438646-29438665 MsG0380013050.01.T01:three_prime_UTR 45.0%
AACTTTCCAGGAGACAACTG+GGG - Chr3:29431260-29431279 None:intergenic 45.0%
AATGAGAGAAAGAGGCCTCA+AGG - Chr3:29432951-29432970 None:intergenic 45.0%
ACATGCACACACACCACTTT+AGG + Chr3:29432660-29432679 MsG0380013050.01.T01:intron 45.0%
ACGTGCCCCTACAATATCAA+GGG - Chr3:29435710-29435729 None:intergenic 45.0%
AGATAGTGAGAATCCGAGAC+GGG + Chr3:29433953-29433972 MsG0380013050.01.T01:CDS 45.0%
AGCAAAACCCTTGAGAATCG+AGG - Chr3:29433291-29433310 None:intergenic 45.0%
AGGATAAGTCTTGGAAGCTC+CGG - Chr3:29435346-29435365 None:intergenic 45.0%
AGGTGAATGAGTTAACGCTG+AGG - Chr3:29430959-29430978 None:intergenic 45.0%
ATAAACCAGTTCCTTCCCTC+AGG + Chr3:29431565-29431584 MsG0380013050.01.T01:intron 45.0%
ATAGGGGTTTACTCCGTTCA+TGG + Chr3:29434280-29434299 MsG0380013050.01.T01:intron 45.0%
ATGAATCATGCGTGGTACAG+AGG + Chr3:29431202-29431221 MsG0380013050.01.T01:CDS 45.0%
ATGAGAGAAAGAGGCCTCAA+GGG - Chr3:29432950-29432969 None:intergenic 45.0%
CAAACGGAATTGATTGGGTC+TGG - Chr3:29431362-29431381 None:intergenic 45.0%
CAACCAAAGTTACCCTCCAA+AGG - Chr3:29436393-29436412 None:intergenic 45.0%
CGATACAACGTCTCAGTTAG+AGG - Chr3:29438223-29438242 None:intergenic 45.0%
CGATGACAATCTGCTTACTC+AGG + Chr3:29436997-29437016 MsG0380013050.01.T01:CDS 45.0%
CTACTTCTGATATGTGGCAG+TGG + Chr3:29434245-29434264 MsG0380013050.01.T01:intron 45.0%
CTTTCTCGTTCAAGCTTCTC+TGG + Chr3:29431305-29431324 MsG0380013050.01.T01:CDS 45.0%
CTTTGTTGGGGAAATGGTGT+TGG + Chr3:29433817-29433836 MsG0380013050.01.T01:intron 45.0%
GAACTTTCCAGGAGACAACT+GGG - Chr3:29431261-29431280 None:intergenic 45.0%
GACCAGTGTCCATAACCAAA+GGG - Chr3:29438651-29438670 None:intergenic 45.0%
GAGATAGTGAGAATCCGAGA+CGG + Chr3:29433952-29433971 MsG0380013050.01.T01:CDS 45.0%
GAGGGTAACTTTGGTTGTGT+TGG + Chr3:29436396-29436415 MsG0380013050.01.T01:intron 45.0%
GAGGTTTCAACCTCAAAGAC+CGG + Chr3:29436579-29436598 MsG0380013050.01.T01:CDS 45.0%
GATAGTCGGTACGATTCACA+TGG - Chr3:29436792-29436811 None:intergenic 45.0%
GATGCCAATCTGATGAATGC+AGG - Chr3:29431485-29431504 None:intergenic 45.0%
GCAACTCTTTCGAACTTTCC+AGG - Chr3:29431272-29431291 None:intergenic 45.0%
GCGATCCCTTGATATTGTAG+GGG + Chr3:29435702-29435721 MsG0380013050.01.T01:intron 45.0%
GGAAATGAGTTCCACTTAGG+TGG - Chr3:29437735-29437754 None:intergenic 45.0%
GTAAGCAGATTGTCATCGGT+AGG - Chr3:29436995-29437014 None:intergenic 45.0%
GTGTCTCTAGCATTCCTCAA+AGG - Chr3:29437653-29437672 None:intergenic 45.0%
GTTGAGTCCCCTTATGTGTT+TGG + Chr3:29434835-29434854 MsG0380013050.01.T01:intron 45.0%
TAGTCGGTACGATTCACATG+GGG - Chr3:29436790-29436809 None:intergenic 45.0%
TCTGTCTTAGGGTTGTGTCT+AGG + Chr3:29435949-29435968 MsG0380013050.01.T01:intron 45.0%
TCTGTTCCAAGGTCAGAGTA+AGG - Chr3:29431180-29431199 None:intergenic 45.0%
TCTTGTATGGCAGGTTGTTG+AGG + Chr3:29436560-29436579 MsG0380013050.01.T01:intron 45.0%
TGAACGGAGTAAACCCCTAT+CGG - Chr3:29434280-29434299 None:intergenic 45.0%
TGACCAGTGTCCATAACCAA+AGG - Chr3:29438652-29438671 None:intergenic 45.0%
TGATATGTGGCAGTGGCATT+TGG + Chr3:29434252-29434271 MsG0380013050.01.T01:intron 45.0%
TTCTGGTGAGATTGTTGGTG+TGG + Chr3:29434048-29434067 MsG0380013050.01.T01:intron 45.0%
TTGAACCTGAGCATGCTCTT+GGG - Chr3:29434326-29434345 None:intergenic 45.0%
TTGAATCTTGCCGGAAGGAA+AGG + Chr3:29431405-29431424 MsG0380013050.01.T01:CDS 45.0%
TTGCCTACGTACCCGTTTAA+GGG - Chr3:29433055-29433074 None:intergenic 45.0%
TTTGAGTCAAAAGCCGATGC+CGG + Chr3:29435324-29435343 MsG0380013050.01.T01:CDS 45.0%
! AGGGAAGGAACTGGTTTATG+CGG - Chr3:29431564-29431583 None:intergenic 45.0%
! GATCAAGGAAGGTTTTGCTG+AGG + Chr3:29438471-29438490 MsG0380013050.01.T01:intron 45.0%
! GATTTGGTCACTGCAGATCA+AGG + Chr3:29438456-29438475 MsG0380013050.01.T01:intron 45.0%
! GCACATCTTTTGCATCCCTT+TGG + Chr3:29434529-29434548 MsG0380013050.01.T01:intron 45.0%
! TCTCTGGAGAACCGATTCAA+TGG + Chr3:29431321-29431340 MsG0380013050.01.T01:CDS 45.0%
! TGGATGGATTCTTGTATGGC+AGG + Chr3:29436551-29436570 MsG0380013050.01.T01:intron 45.0%
! TTGGTGTCTCTCGGTCTAAT+TGG + Chr3:29432029-29432048 MsG0380013050.01.T01:intron 45.0%
!! AGGAAGGAGTATGATGGGTT+GGG + Chr3:29433765-29433784 MsG0380013050.01.T01:intron 45.0%
!! ATGGTGTTGGCGTTTGTTAG+TGG + Chr3:29433830-29433849 MsG0380013050.01.T01:intron 45.0%
!! CATGCCAAGTGTCACTTTGT+TGG + Chr3:29436612-29436631 MsG0380013050.01.T01:CDS 45.0%
!! CTGGTGAGTGTGTGTTTTGA+AGG - Chr3:29435234-29435253 None:intergenic 45.0%
!! GGAGTCGAGTTGAATCATGT+CGG + Chr3:29435287-29435306 MsG0380013050.01.T01:CDS 45.0%
!! GGCTTGTTGAGGATAAGTCT+TGG - Chr3:29435355-29435374 None:intergenic 45.0%
!! TCGTGGTGTCATTTCTACTG+AGG + Chr3:29434446-29434465 MsG0380013050.01.T01:intron 45.0%
!! TTTAGCTTTCAGCCACCAGA+AGG - Chr3:29434780-29434799 None:intergenic 45.0%
!! TTTTTGGCACTCATCTGTGG+TGG + Chr3:29434813-29434832 MsG0380013050.01.T01:intron 45.0%
!!! CATCGGCTTTTGACTCAAAG+TGG - Chr3:29435323-29435342 None:intergenic 45.0%
!!! GTGAGTGTGTGTTTTGAAGG+CGG - Chr3:29435231-29435250 None:intergenic 45.0%
!!! TTTTGATGTGGTGGACACTC+AGG + Chr3:29434575-29434594 MsG0380013050.01.T01:intron 45.0%
!! AAATTAACAATAATAATATA+AGG - Chr3:29433676-29433695 None:intergenic 5.0%
!! TAATAAAAAAAACAAAATAA+AGG - Chr3:29435481-29435500 None:intergenic 5.0%
!!! AATTTTTTATAAAAAAAACT+CGG - Chr3:29438745-29438764 None:intergenic 5.0%
!!! TTATTTTGTTTTTTTTATTA+GGG + Chr3:29435481-29435500 MsG0380013050.01.T01:intron 5.0%
!!! TTTATTTTGTTTTTTTTATT+AGG + Chr3:29435480-29435499 MsG0380013050.01.T01:intron 5.0%
!!! TTTTTTTTAATTTAGTTTTA+GGG + Chr3:29436250-29436269 MsG0380013050.01.T01:intron 5.0%
!!! TTTTTTTTTAATTTAGTTTT+AGG + Chr3:29436249-29436268 MsG0380013050.01.T01:intron 5.0%
AACCCTTGAGAATCGAGGTC+CGG - Chr3:29433286-29433305 None:intergenic 50.0%
AAGGCGGAGAATTCCAAGAG+AGG - Chr3:29435215-29435234 None:intergenic 50.0%
ACAACAAAGCGATCACGGTC+AGG + Chr3:29434118-29434137 MsG0380013050.01.T01:intron 50.0%
ACACAGGTGGTCTGAAAGTG+CGG + Chr3:29434631-29434650 MsG0380013050.01.T01:intron 50.0%
ACCATGCTTACCGGTCTTTG+AGG - Chr3:29436592-29436611 None:intergenic 50.0%
ACCTCAAAGACCGGTAAGCA+TGG + Chr3:29436588-29436607 MsG0380013050.01.T01:CDS 50.0%
ACGATTCACATGGGGAACCT+AGG - Chr3:29436782-29436801 None:intergenic 50.0%
AGGCGGAGAATTCCAAGAGA+GGG - Chr3:29435214-29435233 None:intergenic 50.0%
AGTGGCATTTGGACCCGATA+GGG + Chr3:29434263-29434282 MsG0380013050.01.T01:intron 50.0%
AGTGGTGTGTGTGCATGTGT+CGG - Chr3:29432658-29432677 None:intergenic 50.0%
ATTCCGAGTAGAGTGCAACG+AGG - Chr3:29431097-29431116 None:intergenic 50.0%
CAAGCTTGAATTTGCCCTGC+TGG + Chr3:29431514-29431533 MsG0380013050.01.T01:intron 50.0%
CAAGGAAAGTGGTCACGGAA+AGG - Chr3:29434081-29434100 None:intergenic 50.0%
CAATGCATGACCCACCTAAG+TGG + Chr3:29437721-29437740 MsG0380013050.01.T01:intron 50.0%
CACGTGCCCCTACAATATCA+AGG - Chr3:29435711-29435730 None:intergenic 50.0%
CACTTAGGTGGGTCATGCAT+TGG - Chr3:29437723-29437742 None:intergenic 50.0%
CAGACATCACGGACACAACA+AGG - Chr3:29438504-29438523 None:intergenic 50.0%
CAGCAGGGCAAATTCAAGCT+TGG - Chr3:29431516-29431535 None:intergenic 50.0%
CAGTTCCTTCCCTCAGGTAT+GGG + Chr3:29431571-29431590 MsG0380013050.01.T01:intron 50.0%
CGAACTTTCCAGGAGACAAC+TGG - Chr3:29431262-29431281 None:intergenic 50.0%
CTCACCCATAGCAGACATCA+CGG - Chr3:29438515-29438534 None:intergenic 50.0%
CTCGGATTCTCACTATCTCC+CGG - Chr3:29433951-29433970 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG + Chr3:29433054-29433073 MsG0380013050.01.T01:intron 50.0%
CTTCGGTAGATCCTGTGCTA+AGG + Chr3:29434913-29434932 MsG0380013050.01.T01:intron 50.0%
CTTGAACCTGAGCATGCTCT+TGG - Chr3:29434327-29434346 None:intergenic 50.0%
CTTGCCTACGTACCCGTTTA+AGG - Chr3:29433056-29433075 None:intergenic 50.0%
CTTGGCATGACCATGCTTAC+CGG - Chr3:29436601-29436620 None:intergenic 50.0%
GAACGGAGTAAACCCCTATC+GGG - Chr3:29434279-29434298 None:intergenic 50.0%
GAGTTGAATCATGTCGGACG+AGG + Chr3:29435293-29435312 MsG0380013050.01.T01:CDS 50.0%
GATCCCTTAAACGGGTACGT+AGG + Chr3:29433049-29433068 MsG0380013050.01.T01:intron 50.0%
GATGTGTTGCAAGGTTTCCG+TGG + Chr3:29431381-29431400 MsG0380013050.01.T01:CDS 50.0%
GCATAACCAGGTCCCTTTGA+AGG + Chr3:29434366-29434385 MsG0380013050.01.T01:intron 50.0%
GCCGGTACTATCCGCAAAAA+TGG + Chr3:29435372-29435391 MsG0380013050.01.T01:intron 50.0%
GCTTGTTCTCCGTCATCCAA+AGG + Chr3:29431012-29431031 MsG0380013050.01.T01:CDS 50.0%
GTGTCCGTGATGTCTGCTAT+GGG + Chr3:29438508-29438527 MsG0380013050.01.T01:CDS 50.0%
TAGACACCTTCAAAGGGACC+TGG - Chr3:29434375-29434394 None:intergenic 50.0%
TCGGCCAGATCGTAAAGACA+AGG - Chr3:29434099-29434118 None:intergenic 50.0%
TGCTCAGGTTCAAGCAAGCA+TGG + Chr3:29434333-29434352 MsG0380013050.01.T01:intron 50.0%
TGGTCACTGCAGATCAAGGA+AGG + Chr3:29438460-29438479 MsG0380013050.01.T01:intron 50.0%
TGGTGAGATTGTTGGTGTGG+TGG + Chr3:29434051-29434070 MsG0380013050.01.T01:intron 50.0%
TGTGTCCGTGATGTCTGCTA+TGG + Chr3:29438507-29438526 MsG0380013050.01.T01:CDS 50.0%
TGTTCTCCGTCATCCAAAGG+CGG + Chr3:29431015-29431034 MsG0380013050.01.T01:CDS 50.0%
TTCCGGCAAGATTCAAGCCA+CGG - Chr3:29431401-29431420 None:intergenic 50.0%
TTCCGTGGCTTGAATCTTGC+CGG + Chr3:29431396-29431415 MsG0380013050.01.T01:CDS 50.0%
TTGCCTCGTTGCACTCTACT+CGG + Chr3:29431091-29431110 MsG0380013050.01.T01:CDS 50.0%
! AAGGTTGCGCCGTAGTTTGT+GGG + Chr3:29434159-29434178 MsG0380013050.01.T01:intron 50.0%
! CTGGAGAACCGATTCAATGG+CGG + Chr3:29431324-29431343 MsG0380013050.01.T01:CDS 50.0%
! GACCGTGATCGCTTTGTTGT+CGG - Chr3:29434118-29434137 None:intergenic 50.0%
! GATATTGTAGGGGCACGTGA+TGG + Chr3:29435712-29435731 MsG0380013050.01.T01:intron 50.0%
! GGAAGGTTTTGCTGAGGGTA+AGG + Chr3:29438477-29438496 MsG0380013050.01.T01:CDS 50.0%
! TTTTGCATCCCTTTGGCCGT+TGG + Chr3:29434536-29434555 MsG0380013050.01.T01:intron 50.0%
!! AGTATGATGGGTTGGGGGTT+AGG + Chr3:29433772-29433791 MsG0380013050.01.T01:intron 50.0%
!! CACGTGACTGGTGTTGTTGA+CGG - Chr3:29431052-29431071 None:intergenic 50.0%
!! GAAGGAGTATGATGGGTTGG+GGG + Chr3:29433767-29433786 MsG0380013050.01.T01:intron 50.0%
!! GAGGAAGGAGTATGATGGGT+TGG + Chr3:29433764-29433783 MsG0380013050.01.T01:intron 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG - Chr3:29433263-29433282 None:intergenic 50.0%
!! GGAAGGAGTATGATGGGTTG+GGG + Chr3:29433766-29433785 MsG0380013050.01.T01:intron 50.0%
!! GTGTCATTTCTACTGAGGCG+CGG + Chr3:29434451-29434470 MsG0380013050.01.T01:intron 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG - Chr3:29433268-29433287 None:intergenic 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG - Chr3:29433256-29433275 None:intergenic 50.0%
ACAAAGCGATCACGGTCAGG+AGG + Chr3:29434121-29434140 MsG0380013050.01.T01:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG - Chr3:29433285-29433304 None:intergenic 55.0%
ACCTGAAGTGTGGGCACTAC+AGG + Chr3:29430975-29430994 MsG0380013050.01.T01:CDS 55.0%
AGAATCCGAGACGGGATAGG+AGG + Chr3:29433961-29433980 MsG0380013050.01.T01:CDS 55.0%
AGGATGGGAGGTTGGAGGAT+GGG + Chr3:29433902-29433921 MsG0380013050.01.T01:CDS 55.0%
AGTCTTGGAAGCTCCGGCAT+CGG - Chr3:29435340-29435359 None:intergenic 55.0%
ATCACGGTCAGGAGGATGGA+GGG + Chr3:29434129-29434148 MsG0380013050.01.T01:intron 55.0%
ATGGGGCGGCTACTACTTTC+TGG + Chr3:29434031-29434050 MsG0380013050.01.T01:intron 55.0%
CACGGAGAGTAACACCAGCA+GGG - Chr3:29431531-29431550 None:intergenic 55.0%
CAGTGGCATTTGGACCCGAT+AGG + Chr3:29434262-29434281 MsG0380013050.01.T01:intron 55.0%
CATGTTCCCCAGTTGTCTCC+TGG + Chr3:29431251-29431270 MsG0380013050.01.T01:CDS 55.0%
CCAATCCATGCTCGCACCAA+CGG - Chr3:29434555-29434574 None:intergenic 55.0%
CCAGTCTCTCGCATCACATC+AGG + Chr3:29435250-29435269 MsG0380013050.01.T01:intron 55.0%
CCAGTTCCTTCCCTCAGGTA+TGG + Chr3:29431570-29431589 MsG0380013050.01.T01:intron 55.0%
CCATACCTGAGGGAAGGAAC+TGG - Chr3:29431573-29431592 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG + Chr3:29433264-29433283 MsG0380013050.01.T01:intron 55.0%
CCGTAACCGCCTTTGGATGA+CGG - Chr3:29431024-29431043 None:intergenic 55.0%
CCGTCATCCAAAGGCGGTTA+CGG + Chr3:29431021-29431040 MsG0380013050.01.T01:CDS 55.0%
CCTCCCACACCCACAAACTA+CGG - Chr3:29434171-29434190 None:intergenic 55.0%
CCTGATGTGATGCGAGAGAC+TGG - Chr3:29435253-29435272 None:intergenic 55.0%
CGAATCCGCCGCCATTGAAT+CGG - Chr3:29431335-29431354 None:intergenic 55.0%
CGTGATGTCTGCTATGGGTG+AGG + Chr3:29438513-29438532 MsG0380013050.01.T01:CDS 55.0%
CTAGGTATGGTGCGGAGGAT+GGG + Chr3:29433887-29433906 MsG0380013050.01.T01:CDS 55.0%
CTTCCCTCAGGTATGGGCTT+GGG + Chr3:29431577-29431596 MsG0380013050.01.T01:intron 55.0%
GAAGGTTGCGCCGTAGTTTG+TGG + Chr3:29434158-29434177 MsG0380013050.01.T01:intron 55.0%
GAGTTGTTCTTCGTGGTGCC+GGG + Chr3:29433930-29433949 MsG0380013050.01.T01:CDS 55.0%
GCGGAGAATTCCAAGAGAGG+GGG - Chr3:29435212-29435231 None:intergenic 55.0%
GGAGTTGTTCTTCGTGGTGC+CGG + Chr3:29433929-29433948 MsG0380013050.01.T01:CDS 55.0%
GGCACTACAGGATCTACGCA+AGG + Chr3:29430987-29431006 MsG0380013050.01.T01:CDS 55.0%
GGCCGACAACAAAGCGATCA+CGG + Chr3:29434113-29434132 MsG0380013050.01.T01:intron 55.0%
GGCGGAGAATTCCAAGAGAG+GGG - Chr3:29435213-29435232 None:intergenic 55.0%
GTGAGAATCCGAGACGGGAT+AGG + Chr3:29433958-29433977 MsG0380013050.01.T01:CDS 55.0%
GTGGCATTTGGACCCGATAG+GGG + Chr3:29434264-29434283 MsG0380013050.01.T01:intron 55.0%
GTGGCTTGAATCTTGCCGGA+AGG + Chr3:29431400-29431419 MsG0380013050.01.T01:CDS 55.0%
TCCCGGACCTCGATTCTCAA+GGG + Chr3:29433281-29433300 MsG0380013050.01.T01:intron 55.0%
TCCTGTAGTGCCCACACTTC+AGG - Chr3:29430979-29430998 None:intergenic 55.0%
TTCGCAGAGTGTGTGATGGC+TGG + Chr3:29435879-29435898 MsG0380013050.01.T01:intron 55.0%
! GACATCCCAAGAGCATGCTC+AGG + Chr3:29434318-29434337 MsG0380013050.01.T01:intron 55.0%
! GAGAACCGATTCAATGGCGG+CGG + Chr3:29431327-29431346 MsG0380013050.01.T01:CDS 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG - Chr3:29432646-29432665 None:intergenic 55.0%
! TAGTTTGTGGGTGTGGGAGG+AGG + Chr3:29434171-29434190 MsG0380013050.01.T01:intron 55.0%
!! AGGGTGTTGGTGGCTAGGTA+TGG + Chr3:29433874-29433893 MsG0380013050.01.T01:intron 55.0%
!! ATGCGTGGTACAGAGGCATC+AGG + Chr3:29431209-29431228 MsG0380013050.01.T01:CDS 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG - Chr3:29433267-29433286 None:intergenic 55.0%
!! CGGATAGTACCGGCTTGTTG+AGG - Chr3:29435366-29435385 None:intergenic 55.0%
!! GGTACAGAGGCATCAGGGTA+TGG + Chr3:29431215-29431234 MsG0380013050.01.T01:CDS 55.0%
!! GGTTTTCTGGCGTAGGGTGT+TGG + Chr3:29433861-29433880 MsG0380013050.01.T01:intron 55.0%
!! GTTGGTGGCTAGGTATGGTG+CGG + Chr3:29433879-29433898 MsG0380013050.01.T01:CDS 55.0%
!! TGCGTGGTACAGAGGCATCA+GGG + Chr3:29431210-29431229 MsG0380013050.01.T01:CDS 55.0%
!! TTTCTGGCGTAGGGTGTTGG+TGG + Chr3:29433864-29433883 MsG0380013050.01.T01:intron 55.0%
AGCGATCACGGTCAGGAGGA+TGG + Chr3:29434125-29434144 MsG0380013050.01.T01:intron 60.0%
AGGCGCGGTTGTGTGTAGCT+GGG + Chr3:29434466-29434485 MsG0380013050.01.T01:intron 60.0%
AGTCACGTGCAGTCGAACGC+CGG + Chr3:29431063-29431082 MsG0380013050.01.T01:CDS 60.0%
ATGCTCGCACCAACGGCCAA+AGG - Chr3:29434548-29434567 None:intergenic 60.0%
CCAAGCCCATACCTGAGGGA+AGG - Chr3:29431579-29431598 None:intergenic 60.0%
CCACGGAGAGTAACACCAGC+AGG - Chr3:29431532-29431551 None:intergenic 60.0%
CCGTTGGTGCGAGCATGGAT+TGG + Chr3:29434552-29434571 MsG0380013050.01.T01:intron 60.0%
CCTTCCCTCAGGTATGGGCT+TGG + Chr3:29431576-29431595 MsG0380013050.01.T01:intron 60.0%
CGAGACGGGATAGGAGGTAG+CGG + Chr3:29433967-29433986 MsG0380013050.01.T01:CDS 60.0%
CGCTACCTCCTATCCCGTCT+CGG - Chr3:29433969-29433988 None:intergenic 60.0%
CTCCCGGACCTCGATTCTCA+AGG + Chr3:29433280-29433299 MsG0380013050.01.T01:intron 60.0%
CTCGCCGGAAACAGCAGCAA+CGG + Chr3:29431135-29431154 MsG0380013050.01.T01:CDS 60.0%
GAGGATGGGAGGTTGGAGGA+TGG + Chr3:29433901-29433920 MsG0380013050.01.T01:CDS 60.0%
GATCACGGTCAGGAGGATGG+AGG + Chr3:29434128-29434147 MsG0380013050.01.T01:intron 60.0%
GATCTTCCATCGTCGCTCGC+CGG + Chr3:29431120-29431139 MsG0380013050.01.T01:CDS 60.0%
GATGGGAGGTTGGAGGATGG+GGG + Chr3:29433904-29433923 MsG0380013050.01.T01:CDS 60.0%
GCAGAGTGTGTGATGGCTGG+CGG + Chr3:29435882-29435901 MsG0380013050.01.T01:intron 60.0%
GCTAGGTATGGTGCGGAGGA+TGG + Chr3:29433886-29433905 MsG0380013050.01.T01:CDS 60.0%
GGATGGGAGGTTGGAGGATG+GGG + Chr3:29433903-29433922 MsG0380013050.01.T01:CDS 60.0%
GGGGCTGGAGTTGTTCTTCG+TGG + Chr3:29433923-29433942 MsG0380013050.01.T01:CDS 60.0%
GGTTTGCGGAGTGTGTGTCG+CGG + Chr3:29433998-29434017 MsG0380013050.01.T01:intron 60.0%
GTGCAACGAGGCAAACACGC+CGG - Chr3:29431085-29431104 None:intergenic 60.0%
TGCTCGCACCAACGGCCAAA+GGG - Chr3:29434547-29434566 None:intergenic 60.0%
TTTGGCCGTTGGTGCGAGCA+TGG + Chr3:29434547-29434566 MsG0380013050.01.T01:intron 60.0%
! CCGTAGTTTGTGGGTGTGGG+AGG + Chr3:29434168-29434187 MsG0380013050.01.T01:intron 60.0%
! GCGCCGTAGTTTGTGGGTGT+GGG + Chr3:29434165-29434184 MsG0380013050.01.T01:intron 60.0%
! GGATAGGAGGTAGCGGTGCT+GGG + Chr3:29433974-29433993 MsG0380013050.01.T01:CDS 60.0%
! TAGCGGTGCTGGGTGGTTTG+CGG + Chr3:29433984-29434003 MsG0380013050.01.T01:CDS 60.0%
! TGCGCCGTAGTTTGTGGGTG+TGG + Chr3:29434164-29434183 MsG0380013050.01.T01:intron 60.0%
!! CCTGCTGGTGTTACTCTCCG+TGG + Chr3:29431529-29431548 MsG0380013050.01.T01:intron 60.0%
ACGGTCAGGAGGATGGAGGG+AGG + Chr3:29434132-29434151 MsG0380013050.01.T01:intron 65.0%
CTGTTTCCGGCGAGCGACGA+TGG - Chr3:29431129-29431148 None:intergenic 65.0%
GAGGCGCGGTTGTGTGTAGC+TGG + Chr3:29434465-29434484 MsG0380013050.01.T01:intron 65.0%
GCCGGAAACAGCAGCAACGG+CGG + Chr3:29431138-29431157 MsG0380013050.01.T01:CDS 65.0%
GGCGATGCCGTAACCGCCTT+TGG - Chr3:29431031-29431050 None:intergenic 65.0%
GGCGTTCGACTGCACGTGAC+TGG - Chr3:29431064-29431083 None:intergenic 65.0%
GGGCCCAAGCCCATACCTGA+GGG - Chr3:29431583-29431602 None:intergenic 65.0%
GGTATGGTGCGGAGGATGGG+AGG + Chr3:29433890-29433909 MsG0380013050.01.T01:CDS 65.0%
GGTGGCTAGGTATGGTGCGG+AGG + Chr3:29433882-29433901 MsG0380013050.01.T01:CDS 65.0%
TGCGGAGGATGGGAGGTTGG+AGG + Chr3:29433897-29433916 MsG0380013050.01.T01:CDS 65.0%
TGCGGAGTGTGTGTCGCGGA+GGG + Chr3:29434002-29434021 MsG0380013050.01.T01:intron 65.0%
TGGTGCGGAGGATGGGAGGT+TGG + Chr3:29433894-29433913 MsG0380013050.01.T01:CDS 65.0%
TTGCGGAGTGTGTGTCGCGG+AGG + Chr3:29434001-29434020 MsG0380013050.01.T01:intron 65.0%
! GAGGATGGAGGGAGGCGTGA+AGG + Chr3:29434140-29434159 MsG0380013050.01.T01:intron 65.0%
! GGGATAGGAGGTAGCGGTGC+TGG + Chr3:29433973-29433992 MsG0380013050.01.T01:CDS 65.0%
! TAGGAGGTAGCGGTGCTGGG+TGG + Chr3:29433977-29433996 MsG0380013050.01.T01:CDS 65.0%
!! GCCGCCGTTGCTGCTGTTTC+CGG - Chr3:29431142-29431161 None:intergenic 65.0%
!! GGCGTAGGGTGTTGGTGGCT+AGG + Chr3:29433869-29433888 MsG0380013050.01.T01:intron 65.0%
GAGTGTGTGTCGCGGAGGGC+GGG + Chr3:29434006-29434025 MsG0380013050.01.T01:intron 70.0%
GGAGGTTGGAGGATGGGGGC+TGG + Chr3:29433908-29433927 MsG0380013050.01.T01:CDS 70.0%
GGAGTGTGTGTCGCGGAGGG+CGG + Chr3:29434005-29434024 MsG0380013050.01.T01:intron 70.0%
GGGGCCCAAGCCCATACCTG+AGG - Chr3:29431584-29431603 None:intergenic 70.0%
TGTCGCGGAGGGCGGGAGAT+GGG + Chr3:29434013-29434032 MsG0380013050.01.T01:intron 70.0%
GTCGCGGAGGGCGGGAGATG+GGG + Chr3:29434014-29434033 MsG0380013050.01.T01:intron 75.0%
GTGTCGCGGAGGGCGGGAGA+TGG + Chr3:29434012-29434031 MsG0380013050.01.T01:intron 75.0%
! GCGGAGGGCGGGAGATGGGG+CGG + Chr3:29434017-29434036 MsG0380013050.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 29430889 29438832 29430889 ID=MsG0380013050.01;Name=MsG0380013050.01
Chr3 mRNA 29430889 29438832 29430889 ID=MsG0380013050.01.T01;Parent=MsG0380013050.01;Name=MsG0380013050.01.T01;_AED=0.44;_eAED=0.66;_QI=0|0.42|0.5|1|1|1|8|256|394
Chr3 exon 29438472 29438832 29438472 ID=MsG0380013050.01.T01:exon:6847;Parent=MsG0380013050.01.T01
Chr3 exon 29436944 29437018 29436944 ID=MsG0380013050.01.T01:exon:6846;Parent=MsG0380013050.01.T01
Chr3 exon 29436784 29436840 29436784 ID=MsG0380013050.01.T01:exon:6845;Parent=MsG0380013050.01.T01
Chr3 exon 29436573 29436695 29436573 ID=MsG0380013050.01.T01:exon:6844;Parent=MsG0380013050.01.T01
Chr3 exon 29435272 29435375 29435272 ID=MsG0380013050.01.T01:exon:6843;Parent=MsG0380013050.01.T01
Chr3 exon 29433876 29434009 29433876 ID=MsG0380013050.01.T01:exon:6842;Parent=MsG0380013050.01.T01
Chr3 exon 29433745 29433781 29433745 ID=MsG0380013050.01.T01:exon:6841;Parent=MsG0380013050.01.T01
Chr3 exon 29430889 29431438 29430889 ID=MsG0380013050.01.T01:exon:6840;Parent=MsG0380013050.01.T01
Chr3 CDS 29430889 29431438 29430889 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29433745 29433781 29433745 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29433876 29434009 29433876 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29435272 29435375 29435272 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29436573 29436695 29436573 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29436784 29436840 29436784 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29436944 29437018 29436944 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 CDS 29438472 29438576 29438472 ID=MsG0380013050.01.T01:cds;Parent=MsG0380013050.01.T01
Chr3 three_prime_UTR 29438577 29438832 29438577 ID=MsG0380013050.01.T01:three_prime_utr;Parent=MsG0380013050.01.T01
Gene Sequence

>MsG0380013050.01.T01

ATGATTCGTAACTTCCTTTTCCAGCTTCTCAATTTCGTTCTCTTCTCCCCAATTCTGATTTCTCAGACCTCAGCGTTAACTCATTCACCTGAAGTGTGGGCACTACAGGATCTACGCAAGGACGCTTGTTCTCCGTCATCCAAAGGCGGTTACGGCATCGCCGTCAACAACACCAGTCACGTGCAGTCGAACGCCGGCGTGTTTGCCTCGTTGCACTCTACTCGGAATAATGATCTTCCATCGTCGCTCGCCGGAAACAGCAGCAACGGCGGCGAATTTCCGTTTTATCCTTACTCTGACCTTGGAACAGAGTATGAATCATGCGTGGTACAGAGGCATCAGGGTATGGTGAATCGTCACAGCATGTTCCCCAGTTGTCTCCTGGAAAGTTCGAAAGAGTTGCAGAAGAATCTGAGCTTTCTCGTTCAAGCTTCTCTGGAGAACCGATTCAATGGCGGCGGATTCGCTGTCCAGACCCAATCAATTCCGTTTGATGTGTTGCAAGGTTTCCGTGGCTTGAATCTTGCCGGAAGGAAAGGAAAATTAAACGGTTGGAATTCTGTTTGTTTGAGGAAGGAGTATGATGGGGTGTTGGTGGCTAGGTATGGTGCGGAGGATGGGAGGTTGGAGGATGGGGGCTGGAGTTGTTCTTCGTGGTGCCGGGAGATAGTGAGAATCCGAGACGGGATAGGAGGTAGCGGTGCTGGGTGGTTTGCGGAGTGTTTCGAGACAAATCGGAGTCGAGTTGAATCATGTCGGACGAGGAACACCACTTTGAGTCAAAAGCCGATGCCGGAGCTTCCAAGACTTATCCTCAACAAGCCGGTTGTTGAGGTTTCAACCTCAAAGACCGGTAAGCATGGTCATGCCAAGTGTCACTTTGTTGGAATCGATATTTTCACTTCCAAAAAGCTCGAAGATATTGTGCCCTCTTCCCACAATTGTGATGTTCCCCATGTGAATCGTACCGACTATCAATTGATCGATATTTCTGAAGATGGATTTGTGAGTCTGCTTACTGAAAATGGTAACACCAAAGATGACTTGAAGCTTCCTACCGATGACAATCTGCTTACTCAGATCAAGGAAGGTTTTGCTGAGGGTAAGGACCTTGTTGTGTCCGTGATGTCTGCTATGGGTGAGGAGCAGATTAATGCCCTGAAAGATATTGGTCCAAAGAACTAG

Protein sequence

>MsG0380013050.01.T01

MIRNFLFQLLNFVLFSPILISQTSALTHSPEVWALQDLRKDACSPSSKGGYGIAVNNTSHVQSNAGVFASLHSTRNNDLPSSLAGNSSNGGEFPFYPYSDLGTEYESCVVQRHQGMVNRHSMFPSCLLESSKELQKNLSFLVQASLENRFNGGGFAVQTQSIPFDVLQGFRGLNLAGRKGKLNGWNSVCLRKEYDGVLVARYGAEDGRLEDGGWSCSSWCREIVRIRDGIGGSGAGWFAECFETNRSRVESCRTRNTTLSQKPMPELPRLILNKPVVEVSTSKTGKHGHAKCHFVGIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDNLLTQIKEGFAEGKDLVVSVMSAMGEEQINALKDIGPKN*