AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033377.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033377.01.T01 MTR_0316s0010 93.865 163 9 1 86 247 1 163 1.46e-106 305
MsG0680033377.01.T01 MTR_1g090700 40.449 89 50 1 151 236 5 93 1.05e-16 73.6
MsG0680033377.01.T01 MTR_1g077690 41.176 85 47 1 155 236 9 93 2.65e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033377.01.T01 AT1G05190 71.875 224 61 2 25 247 1 223 5.52e-116 331
MsG0680033377.01.T01 AT2G18400 42.697 89 48 2 151 236 5 93 5.12e-18 77.4

Find 64 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGAAACTTCAACTTAT+TGG 0.159385 6:-63569695 MsG0680033377.01.T01:CDS
CCCTTACCTTTGTAGGGTTC+TGG 0.218928 6:+63569488 None:intergenic
CAACAAGAGATAAATTTAAA+AGG 0.235266 6:+63569386 None:intergenic
ACCTTCACTTTGAGGCCTTC+AGG 0.263864 6:+63569596 None:intergenic
TTGCAGCTTCGATTAGAAAA+TGG 0.297104 6:-63569517 MsG0680033377.01.T01:CDS
TTTGATACCCTTACCTTTGT+AGG 0.300119 6:+63569481 None:intergenic
ATCCAATGTAACTATCAAAA+TGG 0.303648 6:-63571414 MsG0680033377.01.T01:CDS
TCAGGGATTGTCATCTTAAC+AGG 0.311247 6:+63569614 None:intergenic
CCTTCACTTTGAGGCCTTCA+GGG 0.346534 6:+63569597 None:intergenic
AGTGCTCCTGCTACTCATAT+TGG 0.350239 6:-63571500 MsG0680033377.01.T01:CDS
TTTACAAGTGAAAGGTCCTT+TGG 0.350575 6:-63571381 MsG0680033377.01.T01:CDS
GAAACGAAGTAGTTGAATCT+TGG 0.357565 6:-63569646 MsG0680033377.01.T01:CDS
TTTCATCTACCTTCACTTTG+AGG 0.365649 6:+63569588 None:intergenic
ACATTGGATGGAACGGGAAT+TGG 0.366524 6:+63571428 None:intergenic
AACTTATCCTCGAGAAGTTA+AGG 0.378844 6:-63571345 MsG0680033377.01.T01:CDS
AGGTTGAGAGGCAAGAAGAA+GGG 0.383370 6:-63571325 MsG0680033377.01.T01:CDS
AGGAGAAAGGAAGGAAAAGC+AGG 0.383827 6:-63569440 MsG0680033377.01.T01:CDS
ATAGTTACATTGGATGGAAC+GGG 0.422003 6:+63571422 None:intergenic
GGATATGACAAGTCTGAGAT+TGG 0.426355 6:-63569545 MsG0680033377.01.T01:CDS
ATATCCACTAACTGTGATTC+TGG 0.428194 6:+63569562 None:intergenic
TTACAAGTGAAAGGTCCTTT+GGG 0.428296 6:-63571380 MsG0680033377.01.T01:CDS
GGTTATCGTGCTATGGTAGA+AGG 0.428439 6:-63569668 MsG0680033377.01.T01:CDS
GTAAGGCAGTCGAAACTAGA+AGG 0.432413 6:-63571289 MsG0680033377.01.T01:CDS
AACACCAGAATCACAGTTAG+TGG 0.439924 6:-63569566 MsG0680033377.01.T01:CDS
TCTTCATTGTTTGTTAGTGA+TGG 0.445003 6:-63569362 MsG0680033377.01.T01:three_prime_UTR
AAGGTTGAGAGGCAAGAAGA+AGG 0.452066 6:-63571326 MsG0680033377.01.T01:CDS
TAGAAAGACTACCGAATGTA+AGG 0.454853 6:-63571471 MsG0680033377.01.T01:CDS
CTTACGGACAACATAGTGAT+TGG 0.462044 6:-63569734 MsG0680033377.01.T01:CDS
AATGTAAGGAATCACGGATT+GGG 0.463821 6:-63571457 MsG0680033377.01.T01:CDS
GAAGTTGTAAGGAGAAAGGA+AGG 0.473123 6:-63569449 MsG0680033377.01.T01:CDS
AATATGAAGATGAAGTTGTA+AGG 0.477736 6:-63569460 MsG0680033377.01.T01:CDS
TTGATACCCTTACCTTTGTA+GGG 0.482564 6:+63569482 None:intergenic
GGTTGAGAGGCAAGAAGAAG+GGG 0.482647 6:-63571324 MsG0680033377.01.T01:CDS
AATCCGTGATTCCTTACATT+CGG 0.484023 6:+63571460 None:intergenic
TGGTAACTAAAACACAAAAT+GGG 0.487747 6:+63572658 None:intergenic
AACAAGAGATAAATTTAAAA+GGG 0.491398 6:+63569387 None:intergenic
AAGAAACCAATATGAGTAGC+AGG 0.491439 6:+63571494 None:intergenic
ATAGTGATTGGAGTATCTAA+AGG 0.494629 6:-63569722 MsG0680033377.01.T01:CDS
AGATGAAGTTGTAAGGAGAA+AGG 0.496476 6:-63569453 MsG0680033377.01.T01:CDS
GAATGTAAGGAATCACGGAT+TGG 0.498607 6:-63571458 MsG0680033377.01.T01:CDS
TTACCTCTTCGTTTCAACTC+AGG 0.503507 6:-63572886 MsG0680033377.01.T01:intron
TGGTGTCGGTTATCGTGCTA+TGG 0.520430 6:-63569675 MsG0680033377.01.T01:CDS
TCCAGAACCCTACAAAGGTA+AGG 0.527022 6:-63569489 MsG0680033377.01.T01:CDS
AATGTAACTATCAAAATGGA+AGG 0.530387 6:-63571410 MsG0680033377.01.T01:CDS
AAACTTCAACTTATTGGTGT+CGG 0.535328 6:-63569689 MsG0680033377.01.T01:CDS
CTCTCAACCTTAACTTCTCG+AGG 0.537602 6:+63571338 None:intergenic
GATATGACAAGTCTGAGATT+GGG 0.540917 6:-63569544 MsG0680033377.01.T01:CDS
GGAGAAAGGAAGGAAAAGCA+GGG 0.545189 6:-63569439 MsG0680033377.01.T01:CDS
GGGCAATATTTACAAGTGAA+AGG 0.553289 6:-63571389 MsG0680033377.01.T01:CDS
TTACCTTTGTAGGGTTCTGG+AGG 0.564618 6:+63569491 None:intergenic
GATAGTTACATTGGATGGAA+CGG 0.567426 6:+63571421 None:intergenic
CCCTGAAGGCCTCAAAGTGA+AGG 0.567766 6:-63569597 MsG0680033377.01.T01:CDS
GAAATATGAAAGCAAATGAC+TGG 0.569296 6:+63571574 None:intergenic
GAACCTGAGTTGAAACGAAG+AGG 0.574279 6:+63572883 None:intergenic
CTACCGAATGTAAGGAATCA+CGG 0.576712 6:-63571463 MsG0680033377.01.T01:CDS
GAAGGGCAAATCAAATGCAC+GGG 0.584831 6:-63571271 MsG0680033377.01.T01:CDS
AGAAGGGCAAATCAAATGCA+CGG 0.586479 6:-63571272 MsG0680033377.01.T01:CDS
CTCGAGAAGTTAAGGTTGAG+AGG 0.593903 6:-63571337 MsG0680033377.01.T01:CDS
TAAGGCAGTCGAAACTAGAA+GGG 0.621043 6:-63571288 MsG0680033377.01.T01:CDS
GTTAATGAAAGTTCTCCCAA+AGG 0.623551 6:+63571365 None:intergenic
CCAGAACCCTACAAAGGTAA+GGG 0.628031 6:-63569488 MsG0680033377.01.T01:CDS
ATGTAACTATCAAAATGGAA+GGG 0.630990 6:-63571409 MsG0680033377.01.T01:CDS
GTTAAGATGACAATCCCTGA+AGG 0.655322 6:-63569611 MsG0680033377.01.T01:CDS
AGACCTCCAGAACCCTACAA+AGG 0.715455 6:-63569494 MsG0680033377.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTTGTATGATTAAAA+TGG + Chr6:63569404-63569423 None:intergenic 10.0%
!! TTAAAATCATGATAATTTAT+GGG - Chr6:63571749-63571768 MsG0680033377.01.T01:intron 10.0%
!!! TATTATTTCAATTTTCAATT+GGG - Chr6:63569632-63569651 MsG0680033377.01.T01:CDS 10.0%
!!! TTTAAAATCATGATAATTTA+TGG - Chr6:63571748-63571767 MsG0680033377.01.T01:intron 10.0%
!! AACAAGAGATAAATTTAAAA+GGG + Chr6:63572785-63572804 None:intergenic 15.0%
!! ATAACATTTGATTCATTATT+GGG - Chr6:63571640-63571659 MsG0680033377.01.T01:intron 15.0%
!! TATAACATTTGATTCATTAT+TGG - Chr6:63571639-63571658 MsG0680033377.01.T01:intron 15.0%
!! TTGTTCAATAATTGTTTATA+TGG - Chr6:63569454-63569473 MsG0680033377.01.T01:CDS 15.0%
!!! AAAGAAAATAACAATTGTTT+TGG - Chr6:63570267-63570286 MsG0680033377.01.T01:intron 15.0%
!!! AAGAAAATAACAATTGTTTT+GGG - Chr6:63570268-63570287 MsG0680033377.01.T01:intron 15.0%
!!! ATTGTTAGTTATTTTTCTTT+GGG - Chr6:63571469-63571488 MsG0680033377.01.T01:CDS 15.0%
!!! GTATTATTTCAATTTTCAAT+TGG - Chr6:63569631-63569650 MsG0680033377.01.T01:CDS 15.0%
!!! TATTGTTAGTTATTTTTCTT+TGG - Chr6:63571468-63571487 MsG0680033377.01.T01:CDS 15.0%
!!! TCATTTTCTCAAATTATTAT+GGG - Chr6:63570036-63570055 MsG0680033377.01.T01:intron 15.0%
!!! TTAGAATTTTGTATTTGATT+AGG - Chr6:63571814-63571833 MsG0680033377.01.T01:intron 15.0%
!! AGTTATAAAGTTCAAAATAC+TGG + Chr6:63569575-63569594 None:intergenic 20.0%
!! CAACAAGAGATAAATTTAAA+AGG + Chr6:63572786-63572805 None:intergenic 20.0%
!! GTTATAAAGTTCAAAATACT+GGG + Chr6:63569574-63569593 None:intergenic 20.0%
!!! AAATATGAATTTCTTTTGCT+CGG + Chr6:63572847-63572866 None:intergenic 20.0%
!!! AATTTTAAGTCATCTTTTGT+TGG - Chr6:63570621-63570640 MsG0680033377.01.T01:intron 20.0%
!!! ATCATGATTTTAAAGAACTT+AGG + Chr6:63571742-63571761 None:intergenic 20.0%
!!! GTCATTTTCTCAAATTATTA+TGG - Chr6:63570035-63570054 MsG0680033377.01.T01:intron 20.0%
!!! GTCTATATTTTTGTATGTAT+GGG - Chr6:63572272-63572291 MsG0680033377.01.T01:intron 20.0%
!!! TCATGATTTTAAAGAACTTA+GGG + Chr6:63571741-63571760 None:intergenic 20.0%
!!! TTGTGCAAATAAATGTTTTT+AGG - Chr6:63572409-63572428 MsG0680033377.01.T01:intron 20.0%
!!! TTTTGGCAAAAACTATATTT+TGG - Chr6:63570176-63570195 MsG0680033377.01.T01:intron 20.0%
! AAATAAAAAGATCTGAACCA+TGG + Chr6:63571067-63571086 None:intergenic 25.0%
! AAGTAACTAATCATATTGGT+AGG - Chr6:63572021-63572040 MsG0680033377.01.T01:intron 25.0%
! AATATGAAGATGAAGTTGTA+AGG - Chr6:63572709-63572728 MsG0680033377.01.T01:intron 25.0%
! AATGTAACTATCAAAATGGA+AGG - Chr6:63570759-63570778 MsG0680033377.01.T01:intron 25.0%
! AATTCAATGTAATCATGTGT+CGG + Chr6:63570013-63570032 None:intergenic 25.0%
! AGTAGTAAAACAGGTAATTA+AGG - Chr6:63570094-63570113 MsG0680033377.01.T01:intron 25.0%
! AGTATCAATCTTGAAAACAT+AGG + Chr6:63571862-63571881 None:intergenic 25.0%
! ATCCAATGTAACTATCAAAA+TGG - Chr6:63570755-63570774 MsG0680033377.01.T01:intron 25.0%
! ATGGAAGTAACTAATCATAT+TGG - Chr6:63572017-63572036 MsG0680033377.01.T01:intron 25.0%
! ATGGTAACTAAAACACAAAA+TGG + Chr6:63569515-63569534 None:intergenic 25.0%
! ATGTAACTATCAAAATGGAA+GGG - Chr6:63570760-63570779 MsG0680033377.01.T01:intron 25.0%
! GAAAAGAAACTTCAACTTAT+TGG - Chr6:63572474-63572493 MsG0680033377.01.T01:intron 25.0%
! TATCATTATGCTATGATCAT+TGG + Chr6:63571609-63571628 None:intergenic 25.0%
! TCTCTAATTGTTCATGTTTA+TGG + Chr6:63572103-63572122 None:intergenic 25.0%
! TGAAATTATTCACGTAGAAT+TGG - Chr6:63570118-63570137 MsG0680033377.01.T01:intron 25.0%
! TGAGTTAAATTGAGCAAATT+GGG - Chr6:63571303-63571322 MsG0680033377.01.T01:CDS 25.0%
! TGGTAACTAAAACACAAAAT+GGG + Chr6:63569514-63569533 None:intergenic 25.0%
! TGTGACAAAATTCAATGAAA+TGG - Chr6:63569750-63569769 MsG0680033377.01.T01:intron 25.0%
! TTTACAGAAAGAGAAAGAAA+TGG - Chr6:63571998-63572017 MsG0680033377.01.T01:intron 25.0%
! TTTACATAGTTAGTGATTGT+AGG - Chr6:63569873-63569892 MsG0680033377.01.T01:intron 25.0%
!! AATTTTCAATTGGGTCAAAA+GGG - Chr6:63569641-63569660 MsG0680033377.01.T01:CDS 25.0%
!! AGTATTCAATTTCTCTTTTG+TGG - Chr6:63571366-63571385 MsG0680033377.01.T01:CDS 25.0%
!! GGCTTTTATTATGTTATAGT+AGG - Chr6:63570347-63570366 MsG0680033377.01.T01:intron 25.0%
!! GGTTGAAGCAATTTTAAATT+TGG - Chr6:63569680-63569699 MsG0680033377.01.T01:CDS 25.0%
!! TATAGTTTTTGCCAAAATCA+CGG + Chr6:63570173-63570192 None:intergenic 25.0%
!! TTTCTTTTATAGTGCATGTT+TGG + Chr6:63570254-63570273 None:intergenic 25.0%
!! TTTTTATGAAAGTCAAAGCA+TGG - Chr6:63572890-63572909 MsG0680033377.01.T01:CDS 25.0%
!!! AAATGTTTTTAGGACACTTA+CGG - Chr6:63572419-63572438 MsG0680033377.01.T01:intron 25.0%
!!! ATTGTTTTGGTTGCTTTATT+GGG - Chr6:63570296-63570315 MsG0680033377.01.T01:intron 25.0%
!!! ATTTTGATAGTTACATTGGA+TGG + Chr6:63570756-63570775 None:intergenic 25.0%
!!! CTTAAGTGTTCTAAGAAAAA+TGG + Chr6:63569534-63569553 None:intergenic 25.0%
!!! GGTCTATATTTTTGTATGTA+TGG - Chr6:63572271-63572290 MsG0680033377.01.T01:intron 25.0%
!!! GTTTTGGGAAATTATTGTTT+TGG - Chr6:63570283-63570302 MsG0680033377.01.T01:intron 25.0%
!!! TATTGTTTTGGTTGCTTTAT+TGG - Chr6:63570295-63570314 MsG0680033377.01.T01:intron 25.0%
!!! TTCCATTTTGATAGTTACAT+TGG + Chr6:63570760-63570779 None:intergenic 25.0%
!!! TTTTTAATTGTTTCCTGACA+TGG - Chr6:63570949-63570968 MsG0680033377.01.T01:intron 25.0%
AAACTTCAACTTATTGGTGT+CGG - Chr6:63572480-63572499 MsG0680033377.01.T01:intron 30.0%
AAAGAGAAGTAGGGAAATTT+AGG + Chr6:63569322-63569341 None:intergenic 30.0%
AACTACTTGTAGAAAATGCT+AGG + Chr6:63571968-63571987 None:intergenic 30.0%
AAGAGAAGTAGGGAAATTTA+GGG + Chr6:63569321-63569340 None:intergenic 30.0%
AATCACAAGCACTAAATACT+TGG + Chr6:63571914-63571933 None:intergenic 30.0%
ACTGTTTCAATTTGTGAATG+TGG - Chr6:63569592-63569611 MsG0680033377.01.T01:CDS 30.0%
AGCTTTCATAGTAGTAAAAC+AGG - Chr6:63570085-63570104 MsG0680033377.01.T01:intron 30.0%
ATCGACAGAACATAGTTATA+GGG + Chr6:63572218-63572237 None:intergenic 30.0%
ATTCGAGATATACTTAAGAC+AGG - Chr6:63571692-63571711 MsG0680033377.01.T01:intron 30.0%
CAGCTATTAGATAAAATCCA+TGG - Chr6:63571047-63571066 MsG0680033377.01.T01:intron 30.0%
GAAATATGAAAGCAAATGAC+TGG + Chr6:63570598-63570617 None:intergenic 30.0%
GTGAGTTAAATTGAGCAAAT+TGG - Chr6:63571302-63571321 MsG0680033377.01.T01:CDS 30.0%
TATACAAAGATCTTGATGTG+AGG - Chr6:63570326-63570345 MsG0680033377.01.T01:intron 30.0%
TATGAAGCACGAATACTAAT+TGG - Chr6:63569935-63569954 MsG0680033377.01.T01:intron 30.0%
TTCAAACAAAATGCTGTCTT+TGG - Chr6:63571884-63571903 MsG0680033377.01.T01:intron 30.0%
! AAACGACTTTTCCTTTAGAT+CGG - Chr6:63571111-63571130 MsG0680033377.01.T01:intron 30.0%
! ATAGTGATTGGAGTATCTAA+AGG - Chr6:63572447-63572466 MsG0680033377.01.T01:intron 30.0%
! CAATTTTCAATTGGGTCAAA+AGG - Chr6:63569640-63569659 MsG0680033377.01.T01:CDS 30.0%
! TAGGATTATAAATGCCACTT+TGG - Chr6:63571833-63571852 MsG0680033377.01.T01:intron 30.0%
! TCTTCATTGTTTGTTAGTGA+TGG - Chr6:63572807-63572826 MsG0680033377.01.T01:intron 30.0%
! TTTTAGTCACTCGTGAATTT+TGG - Chr6:63570485-63570504 MsG0680033377.01.T01:intron 30.0%
!! TCTTCTGTTTCTATTGAATC+TGG + Chr6:63572068-63572087 None:intergenic 30.0%
!!! AAGGGTTGTAATTTTTTTGC+TGG - Chr6:63569659-63569678 MsG0680033377.01.T01:CDS 30.0%
!!! GTGACTGTGATATTTTTTAC+AGG + Chr6:63571011-63571030 None:intergenic 30.0%
!!! TTTAGTTTTCACCGATCTAA+AGG + Chr6:63571125-63571144 None:intergenic 30.0%
AAAAATAGATGCTGCCAATG+AGG - Chr6:63570972-63570991 MsG0680033377.01.T01:intron 35.0%
AACTTATCCTCGAGAAGTTA+AGG - Chr6:63570824-63570843 MsG0680033377.01.T01:intron 35.0%
AAGAAACCAATATGAGTAGC+AGG + Chr6:63570678-63570697 None:intergenic 35.0%
AATCCGTGATTCCTTACATT+CGG + Chr6:63570712-63570731 None:intergenic 35.0%
AATGTAAGGAATCACGGATT+GGG - Chr6:63570712-63570731 MsG0680033377.01.T01:intron 35.0%
AATTTAACTCACAAGTGGCA+TGG + Chr6:63571294-63571313 None:intergenic 35.0%
ACTAAAACATATACAGAGCC+TGG + Chr6:63570472-63570491 None:intergenic 35.0%
AGAGAAAGAGAAAGAGAAGT+AGG + Chr6:63569332-63569351 None:intergenic 35.0%
AGATGAAGTTGTAAGGAGAA+AGG - Chr6:63572716-63572735 MsG0680033377.01.T01:intron 35.0%
AGTACTAGTCACAGTGAAAT+TGG - Chr6:63571337-63571356 MsG0680033377.01.T01:CDS 35.0%
ATAGTTACATTGGATGGAAC+GGG + Chr6:63570750-63570769 None:intergenic 35.0%
ATATCCACTAACTGTGATTC+TGG + Chr6:63572610-63572629 None:intergenic 35.0%
ATTTAACTCACAAGTGGCAT+GGG + Chr6:63571293-63571312 None:intergenic 35.0%
CATCGACAGAACATAGTTAT+AGG + Chr6:63572219-63572238 None:intergenic 35.0%
CTATAACTATGTTCTGTCGA+TGG - Chr6:63572217-63572236 MsG0680033377.01.T01:intron 35.0%
CTATCAAGGGAGCAATTATT+AGG + Chr6:63572189-63572208 None:intergenic 35.0%
GAAACGAAGTAGTTGAATCT+TGG - Chr6:63572523-63572542 MsG0680033377.01.T01:intron 35.0%
GAGAAAGAGAAAGAGAAGTA+GGG + Chr6:63569331-63569350 None:intergenic 35.0%
GAGCAATTATTAGGTAGGTT+GGG + Chr6:63572180-63572199 None:intergenic 35.0%
GATAGTTACATTGGATGGAA+CGG + Chr6:63570751-63570770 None:intergenic 35.0%
GCACGAATACTAATTGGATT+AGG - Chr6:63569941-63569960 MsG0680033377.01.T01:intron 35.0%
GCTTCAACAAAATCATGTTG+CGG - Chr6:63570200-63570219 MsG0680033377.01.T01:intron 35.0%
GGAAAGTGACTTCTAATTGA+AGG - Chr6:63570431-63570450 MsG0680033377.01.T01:intron 35.0%
GGGCAATATTTACAAGTGAA+AGG - Chr6:63570780-63570799 MsG0680033377.01.T01:intron 35.0%
GTGACTTCTAATTGAAGGAT+AGG - Chr6:63570436-63570455 MsG0680033377.01.T01:intron 35.0%
GTGGAAATTCTTGACTGAAT+TGG - Chr6:63571385-63571404 MsG0680033377.01.T01:CDS 35.0%
GTTAATGAAAGTTCTCCCAA+AGG + Chr6:63570807-63570826 None:intergenic 35.0%
TAGAAAGACTACCGAATGTA+AGG - Chr6:63570698-63570717 MsG0680033377.01.T01:intron 35.0%
TATGATCATTGGCAAGGATT+TGG + Chr6:63571598-63571617 None:intergenic 35.0%
TGCTCAATTTAACTCACAAG+TGG + Chr6:63571299-63571318 None:intergenic 35.0%
TTACAAGTGAAAGGTCCTTT+GGG - Chr6:63570789-63570808 MsG0680033377.01.T01:intron 35.0%
TTATGCTATGATCATTGGCA+AGG + Chr6:63571604-63571623 None:intergenic 35.0%
TTGATACCCTTACCTTTGTA+GGG + Chr6:63572690-63572709 None:intergenic 35.0%
TTGCAGCTTCGATTAGAAAA+TGG - Chr6:63572652-63572671 MsG0680033377.01.T01:intron 35.0%
TTTACAAGTGAAAGGTCCTT+TGG - Chr6:63570788-63570807 MsG0680033377.01.T01:intron 35.0%
TTTATCGTCACAACTCGAAA+AGG + Chr6:63571669-63571688 None:intergenic 35.0%
TTTCATCTACCTTCACTTTG+AGG + Chr6:63572584-63572603 None:intergenic 35.0%
TTTGATACCCTTACCTTTGT+AGG + Chr6:63572691-63572710 None:intergenic 35.0%
! ATGTTTGGATGGAAGGATTT+TGG - Chr6:63572241-63572260 MsG0680033377.01.T01:intron 35.0%
! ATTAGCTCTTTGGATTACTG+GGG + Chr6:63572132-63572151 None:intergenic 35.0%
! GATATGACAAGTCTGAGATT+GGG - Chr6:63572625-63572644 MsG0680033377.01.T01:intron 35.0%
! GATTAGCTCTTTGGATTACT+GGG + Chr6:63572133-63572152 None:intergenic 35.0%
! GTATCATGATGATGTAGTTG+TGG - Chr6:63569710-63569729 MsG0680033377.01.T01:CDS 35.0%
! TTAGTAAGTTGCCGTGATTT+TGG - Chr6:63570159-63570178 MsG0680033377.01.T01:intron 35.0%
! TTTCCACTTCGTTGTGTTTT+AGG + Chr6:63570416-63570435 None:intergenic 35.0%
!! AGAGAGAGTGTTATCTTTCA+TGG + Chr6:63572156-63572175 None:intergenic 35.0%
!! AGCATCTATTTTTCCATGTC+AGG + Chr6:63570965-63570984 None:intergenic 35.0%
!! GAGAGAGTGTTATCTTTCAT+GGG + Chr6:63572155-63572174 None:intergenic 35.0%
!! TGTTTTTGCAATCCATGTCA+TGG + Chr6:63571252-63571271 None:intergenic 35.0%
AACACCAGAATCACAGTTAG+TGG - Chr6:63572603-63572622 MsG0680033377.01.T01:intron 40.0%
ACAAATGAATTGTGTCGGAG+AGG + Chr6:63571187-63571206 None:intergenic 40.0%
AGAAGGGCAAATCAAATGCA+CGG - Chr6:63570897-63570916 MsG0680033377.01.T01:intron 40.0%
AGGATAGGATCTAGTTAACC+AGG - Chr6:63570451-63570470 MsG0680033377.01.T01:intron 40.0%
ATGAAGCACAAACTCAGACA+CGG + Chr6:63570065-63570084 None:intergenic 40.0%
CAAGGGAGCAATTATTAGGT+AGG + Chr6:63572185-63572204 None:intergenic 40.0%
CATAGTACGTATCCAACATC+AGG + Chr6:63569972-63569991 None:intergenic 40.0%
CTACCGAATGTAAGGAATCA+CGG - Chr6:63570706-63570725 MsG0680033377.01.T01:intron 40.0%
CTGGTTCCTGTCAAATTCAA+TGG + Chr6:63572049-63572068 None:intergenic 40.0%
CTTACGGACAACATAGTGAT+TGG - Chr6:63572435-63572454 MsG0680033377.01.T01:intron 40.0%
GAAGTTGTAAGGAGAAAGGA+AGG - Chr6:63572720-63572739 MsG0680033377.01.T01:intron 40.0%
GAATGTAAGGAATCACGGAT+TGG - Chr6:63570711-63570730 MsG0680033377.01.T01:intron 40.0%
GAGAGAATCTGAATCCTCAT+TGG + Chr6:63570989-63571008 None:intergenic 40.0%
GGACGACAAATGAATTGTGT+CGG + Chr6:63571192-63571211 None:intergenic 40.0%
GGAGCAATTATTAGGTAGGT+TGG + Chr6:63572181-63572200 None:intergenic 40.0%
GTTAAGATGACAATCCCTGA+AGG - Chr6:63572558-63572577 MsG0680033377.01.T01:intron 40.0%
TAACTTGACAGTGTGAATGC+AGG - Chr6:63571551-63571570 MsG0680033377.01.T01:CDS 40.0%
TAAGGCAGTCGAAACTAGAA+GGG - Chr6:63570881-63570900 MsG0680033377.01.T01:intron 40.0%
TAGGCTCCATTGAATTTGAC+AGG - Chr6:63572040-63572059 MsG0680033377.01.T01:intron 40.0%
TATAGGGAGAGAGCTATCAA+GGG + Chr6:63572202-63572221 None:intergenic 40.0%
TCAGGGATTGTCATCTTAAC+AGG + Chr6:63572558-63572577 None:intergenic 40.0%
TCTGAGTCGCTAGTATCAAA+CGG - Chr6:63571521-63571540 MsG0680033377.01.T01:CDS 40.0%
TGACCTAAAACACAACGAAG+TGG - Chr6:63570410-63570429 MsG0680033377.01.T01:intron 40.0%
TGTTCTGTCGATGGTATGTT+TGG - Chr6:63572226-63572245 MsG0680033377.01.T01:intron 40.0%
TTACCTCTTCGTTTCAACTC+AGG - Chr6:63569283-63569302 MsG0680033377.01.T01:three_prime_UTR 40.0%
TTATAGGGAGAGAGCTATCA+AGG + Chr6:63572203-63572222 None:intergenic 40.0%
! CTTTTTCTGATTGAAGCCGT+GGG + Chr6:63571433-63571452 None:intergenic 40.0%
! GGATATGACAAGTCTGAGAT+TGG - Chr6:63572624-63572643 MsG0680033377.01.T01:intron 40.0%
! TTTGGATGGAAGGATTTTGG+AGG - Chr6:63572244-63572263 MsG0680033377.01.T01:intron 40.0%
! TTTTGCAATCCATGTCATGG+AGG + Chr6:63571249-63571268 None:intergenic 40.0%
!! CTTTCATGGGATTAGCTCTT+TGG + Chr6:63572142-63572161 None:intergenic 40.0%
!! GCAAGAAGAAGGGGTTTTAA+AGG - Chr6:63570854-63570873 MsG0680033377.01.T01:intron 40.0%
!! GGATTAGCTCTTTGGATTAC+TGG + Chr6:63572134-63572153 None:intergenic 40.0%
!! GTCGTTTTGAGCAACTAGAA+TGG + Chr6:63571098-63571117 None:intergenic 40.0%
!!! AGGGGTTTTAAAGGTCAGTA+AGG - Chr6:63570863-63570882 MsG0680033377.01.T01:intron 40.0%
AAGGTTGAGAGGCAAGAAGA+AGG - Chr6:63570843-63570862 MsG0680033377.01.T01:intron 45.0%
ACATTGGATGGAACGGGAAT+TGG + Chr6:63570744-63570763 None:intergenic 45.0%
AGAGGTCGAAATAGGGAGAA+AGG + Chr6:63571169-63571188 None:intergenic 45.0%
AGGAGAAAGGAAGGAAAAGC+AGG - Chr6:63572729-63572748 MsG0680033377.01.T01:intron 45.0%
AGGTCGAAATAGGGAGAAAG+GGG + Chr6:63571167-63571186 None:intergenic 45.0%
AGGTTGAGAGGCAAGAAGAA+GGG - Chr6:63570844-63570863 MsG0680033377.01.T01:intron 45.0%
AGTGCTCCTGCTACTCATAT+TGG - Chr6:63570669-63570688 MsG0680033377.01.T01:intron 45.0%
CAAGCTTAAGAGGTCTTCTG+TGG + Chr6:63571222-63571241 None:intergenic 45.0%
CAGGAAGAAGTGATGCAGAA+TGG - Chr6:63571711-63571730 MsG0680033377.01.T01:intron 45.0%
CCAGAACCCTACAAAGGTAA+GGG - Chr6:63572681-63572700 MsG0680033377.01.T01:CDS 45.0%
CGATGGTATGTTTGGATGGA+AGG - Chr6:63572234-63572253 MsG0680033377.01.T01:intron 45.0%
CTCGAGAAGTTAAGGTTGAG+AGG - Chr6:63570832-63570851 MsG0680033377.01.T01:intron 45.0%
CTCTCAACCTTAACTTCTCG+AGG + Chr6:63570834-63570853 None:intergenic 45.0%
CTGTCGATGGTATGTTTGGA+TGG - Chr6:63572230-63572249 MsG0680033377.01.T01:intron 45.0%
GAAAACATAGGCAGCCAAAG+TGG + Chr6:63571850-63571869 None:intergenic 45.0%
GAAGGGCAAATCAAATGCAC+GGG - Chr6:63570898-63570917 MsG0680033377.01.T01:intron 45.0%
GAGGTCGAAATAGGGAGAAA+GGG + Chr6:63571168-63571187 None:intergenic 45.0%
GATTAGGTGTGTCCTGATGT+TGG - Chr6:63569957-63569976 MsG0680033377.01.T01:intron 45.0%
GGAGAAAGGAAGGAAAAGCA+GGG - Chr6:63572730-63572749 MsG0680033377.01.T01:intron 45.0%
GGTTATCGTGCTATGGTAGA+AGG - Chr6:63572501-63572520 MsG0680033377.01.T01:intron 45.0%
GTAAGGCAGTCGAAACTAGA+AGG - Chr6:63570880-63570899 MsG0680033377.01.T01:intron 45.0%
TCCAGAACCCTACAAAGGTA+AGG - Chr6:63572680-63572699 MsG0680033377.01.T01:CDS 45.0%
TGGAGGATGACAAGCTTAAG+AGG + Chr6:63571232-63571251 None:intergenic 45.0%
! ATCAAATGCACGGGCTTTTC+AGG - Chr6:63570907-63570926 MsG0680033377.01.T01:intron 45.0%
! CAAGTGGCATGGGTTGAAAT+TGG + Chr6:63571283-63571302 None:intergenic 45.0%
! CTTTTGTTGGCGAGAGAAGT+AGG - Chr6:63570634-63570653 MsG0680033377.01.T01:intron 45.0%
! GAACCTGAGTTGAAACGAAG+AGG + Chr6:63569289-63569308 None:intergenic 45.0%
! TTACCTTTGTAGGGTTCTGG+AGG + Chr6:63572681-63572700 None:intergenic 45.0%
!! ATCATGTGTCGGTGTCATGT+TGG + Chr6:63570002-63570021 None:intergenic 45.0%
!! GCTTTTTCTGATTGAAGCCG+TGG + Chr6:63571434-63571453 None:intergenic 45.0%
!! TGGAAGGATTTTGGAGGACT+AGG - Chr6:63572250-63572269 MsG0680033377.01.T01:intron 45.0%
AGACCTCCAGAACCCTACAA+AGG - Chr6:63572675-63572694 MsG0680033377.01.T01:CDS 50.0%
CCCTTACCTTTGTAGGGTTC+TGG + Chr6:63572684-63572703 None:intergenic 50.0%
CCTCTTCGAACTCTTTCCCA+CGG - Chr6:63571414-63571433 MsG0680033377.01.T01:CDS 50.0%
GAGGTCTTCTGTGGAAGACA+AGG + Chr6:63571213-63571232 None:intergenic 50.0%
GCTTGTCATCCTCCATGACA+TGG - Chr6:63571237-63571256 MsG0680033377.01.T01:intron 50.0%
GGTTGAGAGGCAAGAAGAAG+GGG - Chr6:63570845-63570864 MsG0680033377.01.T01:intron 50.0%
GTGTCGGAGAGGTCGAAATA+GGG + Chr6:63571176-63571195 None:intergenic 50.0%
TGGGAAAGAGTTCGAAGAGG+TGG + Chr6:63571414-63571433 None:intergenic 50.0%
TGTGTCGGAGAGGTCGAAAT+AGG + Chr6:63571177-63571196 None:intergenic 50.0%
!! ACCTTCACTTTGAGGCCTTC+AGG + Chr6:63572576-63572595 None:intergenic 50.0%
!! CCTTCACTTTGAGGCCTTCA+GGG + Chr6:63572575-63572594 None:intergenic 50.0%
!! TGGTGTCGGTTATCGTGCTA+TGG - Chr6:63572494-63572513 MsG0680033377.01.T01:intron 50.0%
!! TGTCGGTGTCATGTTGGTGT+CGG + Chr6:63569996-63570015 None:intergenic 50.0%
CCCTGAAGGCCTCAAAGTGA+AGG - Chr6:63572572-63572591 MsG0680033377.01.T01:intron 55.0%
CCGTGGGAAAGAGTTCGAAG+AGG + Chr6:63571417-63571436 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 63569270 63572921 63569270 ID=MsG0680033377.01;Name=MsG0680033377.01
Chr6 mRNA 63569270 63572921 63569270 ID=MsG0680033377.01.T01;Parent=MsG0680033377.01;Name=MsG0680033377.01.T01;_AED=0.48;_eAED=0.51;_QI=0|0.33|0.25|1|0.33|0.25|4|157|247
Chr6 exon 63572887 63572921 63572887 ID=MsG0680033377.01.T01:exon:19117;Parent=MsG0680033377.01.T01
Chr6 exon 63572673 63572706 63572673 ID=MsG0680033377.01.T01:exon:19118;Parent=MsG0680033377.01.T01
Chr6 exon 63571263 63571603 63571263 ID=MsG0680033377.01.T01:exon:19119;Parent=MsG0680033377.01.T01
Chr6 exon 63569270 63569760 63569270 ID=MsG0680033377.01.T01:exon:19120;Parent=MsG0680033377.01.T01
Chr6 CDS 63572887 63572921 63572887 ID=MsG0680033377.01.T01:cds;Parent=MsG0680033377.01.T01
Chr6 CDS 63572673 63572706 63572673 ID=MsG0680033377.01.T01:cds;Parent=MsG0680033377.01.T01
Chr6 CDS 63571263 63571603 63571263 ID=MsG0680033377.01.T01:cds;Parent=MsG0680033377.01.T01
Chr6 CDS 63569427 63569760 63569427 ID=MsG0680033377.01.T01:cds;Parent=MsG0680033377.01.T01
Chr6 three_prime_UTR 63569270 63569426 63569270 ID=MsG0680033377.01.T01:three_prime_utr;Parent=MsG0680033377.01.T01
Gene Sequence

>MsG0680033377.01.T01

ATGGCTTCTTCAGTTACCTCTTCGTTTCAACTCAGTGTTGAATGCAATGAAAGAAAAAGTACCCATTTTTTTCTCACCAGTCATTTGCTTTCATATTTCAGCAATTTTAAGTCATCTTTTGTTGGCGAGAGAAGTAGGCTCAGAGTTTCAAGTGCTCCTGCTACTCATATTGGTTTCTTTAGAAAGACTACCGAATGTAAGGAATCACGGATTGGGAAACAACCAATTCCCGTTCCATCCAATGTAACTATCAAAATGGAAGGGCAATATTTACAAGTGAAAGGTCCTTTGGGAGAACTTTCATTAACTTATCCTCGAGAAGTTAAGGTTGAGAGGCAAGAAGAAGGGGTTTTAAAGGTCAGTAAGGCAGTCGAAACTAGAAGGGCAAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAACATAGTGATTGGAGTATCTAAAGGTTTTGAAAAGAAACTTCAACTTATTGGTGTCGGTTATCGTGCTATGGTAGAAGGAAACGAAGTAGTTGAATCTTGGATTTCTCATCCTGTTAAGATGACAATCCCTGAAGGCCTCAAAGTGAAGGTAGATGAAAACACCAGAATCACAGTTAGTGGATATGACAAGTCTGAGATTGGGCAGTTTGCAGCTTCGATTAGAAAATGGAGACCTCCAGAACCCTACAAAGGTAAGGGTATCAAATATGAAGATGAAGTTGTAAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGA

Protein sequence

>MsG0680033377.01.T01

MASSVTSSFQLSVECNERKSTHFFLTSHLLSYFSNFKSSFVGERSRLRVSSAPATHIGFFRKTTECKESRIGKQPIPVPSNVTIKMEGQYLQVKGPLGELSLTYPREVKVERQEEGVLKVSKAVETRRANQMHGLFRTLTDNIVIGVSKGFEKKLQLIGVGYRAMVEGNEVVESWISHPVKMTIPEGLKVKVDENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGIKYEDEVVRRKEGKAGKKK*