AlfalfaGEDB | MsG0380013402.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013402.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013402.01.T01	KEH25995.1	36.198	384	195	7	3	341	27	405	2.18E-67	233

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013402.01.T01	A0A072UJI6	36.198	384	195	7	3	341	27	405	1.04e-67	233

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
MsG0180002283.01	MsG0380013402.01	PPI
MsG0180004482.01	MsG0380013402.01	PPI
MsG0380011614.01	MsG0380013402.01	PPI
MsG0380011614.01	MsG0380013402.01	PPI
MsG0380013402.01	MsG0280007601.01	PPI
MsG0380013402.01	MsG0580029754.01	PPI
MsG0380013402.01	MsG0080049033.01	PPI
MsG0380013402.01	MsG0580027361.01	PPI
MsG0380013402.01	MsG0780038445.01	PPI
MsG0380013402.01	MsG0180006260.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013402.01.T01	MTR_6g039060	36.198	384	195	7	3	341	27	405	2.64e-71	233
MsG0380013402.01.T01	MTR_3g047490	40.594	303	138	5	3	269	27	323	3.87e-69	220
MsG0380013402.01.T01	MTR_5g049460	34.673	398	199	10	3	359	27	404	1.44e-64	213
MsG0380013402.01.T01	MTR_0010s0130	44.033	243	131	2	3	241	27	268	2.93e-61	208
MsG0380013402.01.T01	MTR_0752s0020	39.583	240	121	4	3	237	27	247	4.19e-55	191
MsG0380013402.01.T01	MTR_6g052660	34.343	396	194	13	5	344	6	391	3.60e-54	189
MsG0380013402.01.T01	MTR_0195s0040	30.958	407	226	11	5	359	34	437	4.78e-51	180
MsG0380013402.01.T01	MTR_4g053915	34.062	320	162	6	8	285	36	348	3.19e-50	177
MsG0380013402.01.T01	MTR_7g068680	32.713	376	211	11	5	351	34	396	1.00e-48	170
MsG0380013402.01.T01	MTR_4g119430	34.314	306	159	6	5	272	33	334	1.40e-48	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 97 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCGTAAGCAAACAAG+CGG	0.638533	3:+36778945	MsG0380013402.01.T01:CDS
AAACAAGCGGGGTCAAAGAA+AGG	0.433658	3:+36778958	MsG0380013402.01.T01:CDS
AAACTTCCCCAGATATGTAA+TGG	0.502711	3:+36779329	MsG0380013402.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG	0.567877	3:+36778972	MsG0380013402.01.T01:CDS
AAAGGAAAGATGCAGAAGGT+TGG	0.591290	3:+36779899	MsG0380013402.01.T01:CDS
AAAGTCGTAAGCAAACAAGC+GGG	0.575672	3:+36778946	MsG0380013402.01.T01:CDS
AACAAGCGGGGTCAAAGAAA+GGG	0.497240	3:+36778959	MsG0380013402.01.T01:CDS
AACATATGTGAACTTGGTCA+AGG	0.631522	3:+36778882	MsG0380013402.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG	0.558761	3:+36779558	MsG0380013402.01.T01:CDS
AAGGAAGATGTCCTGCTAAA+AGG	0.323997	3:+36779129	MsG0380013402.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTATGAAGTAAACATGGA+AGG	+	Chr3:36778808-36778827	MsG0380013402.01.T01:CDS	30.0%
AGATGATCCATTACATATCT+GGG	-	Chr3:36779339-36779358	None:intergenic	30.0%
GAGTATTTCAAGATGCTAAA+TGG	+	Chr3:36778856-36778875	MsG0380013402.01.T01:CDS	30.0%
TCTAAGCTATCAAATGATGT+AGG	-	Chr3:36779006-36779025	None:intergenic	30.0%
TGAAATCTTTCATCAAGGAA+GGG	+	Chr3:36779425-36779444	MsG0380013402.01.T01:CDS	30.0%
TGACTCTACTTGAACTATTA+AGG	-	Chr3:36778764-36778783	None:intergenic	30.0%
AAAAGTCGTAAGCAAACAAG+CGG	+	Chr3:36778945-36778964	MsG0380013402.01.T01:CDS	35.0%
AAACTTCCCCAGATATGTAA+TGG	+	Chr3:36779329-36779348	MsG0380013402.01.T01:CDS	35.0%
AAAGAAAGGGAAAATGGTCA+TGG	+	Chr3:36778972-36778991	MsG0380013402.01.T01:CDS	35.0%
AACATATGTGAACTTGGTCA+AGG	+	Chr3:36778882-36778901	MsG0380013402.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	36778742	36779955	36778742	ID=MsG0380013402.01;Name=MsG0380013402.01
Chr3	mRNA	36778742	36779955	36778742	ID=MsG0380013402.01.T01;Parent=MsG0380013402.01;Name=MsG0380013402.01.T01;_AED=0.42;_eAED=1.00;_QI=0\|0\|0\|1\|0\|0\|2\|0\|376
Chr3	exon	36778742	36779446	36778742	ID=MsG0380013402.01.T01:exon:7709;Parent=MsG0380013402.01.T01
Chr3	exon	36779530	36779955	36779530	ID=MsG0380013402.01.T01:exon:7710;Parent=MsG0380013402.01.T01
Chr3	CDS	36778742	36779446	36778742	ID=MsG0380013402.01.T01:cds;Parent=MsG0380013402.01.T01
Chr3	CDS	36779530	36779955	36779530	ID=MsG0380013402.01.T01:cds;Parent=MsG0380013402.01.T01

Gene Sequence

>MsG0380013402.01.T01

ATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGTTTGATAGAAACTCAGATGATGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCGGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGCATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTAAAAGGTTACTACAACTCTCTTCTGGGTGGGAAGAAAGATGCCAAGCCTTCAGAGATGGAGATTCACAACAGAATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGGTCTGACCAACCCAACAACCAACAGAAGCTAGCAATTTATTTCATGACCAATCTTGAAAAGATAAACTTCCCCAGATATGTAATGGATCATCTCTGCTGGGCCATAAACGAAAGCACTACAAGAGGAAGAAAACAAGTACCCTATGGAAGATTGCTTTCTGAAATCTTTCATCAAGGAAGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTGACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTACGTCTTGGAGGAAGATGCAAGGTCTCAGGAGGAAGCTGCTCTTGCTAAAGGGAAAGGCAAGAAGGCCAAGGCAGTTGCTGTGTCAGAAGCTGCTGTTTCTGAGGCACCTGAAGGGAAAAGGGCCAGAACTAGTTCTGAATCAGAAGCTGCTCCTACTAAAGGAAAGAAGGCCAGAACTAGTACTGAGTCAGAAGCTGCTAAACCTGTTTTTATCAAGGAAAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCACAAAGAGAGAAAAGGTAA

Protein sequence

>MsG0380013402.01.T01

MDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMMSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMHAEGRFQEIVRKEDVLLKGYYNSLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMTNLEKINFPRYVMDHLCWAINESTTRGRKQVPYGRLLSEIFHQGRSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESDSDFLVQSVAEYVLEEDARSQEEAALAKGKGKKAKAVAVSEAAVSEAPEGKRARTSSESEAAPTKGKKARTSTESEAAKPVFIKEKGKMQKVGAASIPQREKR*