AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013402.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013402.01.T01 MTR_6g039060 36.198 384 195 7 3 341 27 405 2.64e-71 233
MsG0380013402.01.T01 MTR_3g047490 40.594 303 138 5 3 269 27 323 3.87e-69 220
MsG0380013402.01.T01 MTR_5g049460 34.673 398 199 10 3 359 27 404 1.44e-64 213
MsG0380013402.01.T01 MTR_0010s0130 44.033 243 131 2 3 241 27 268 2.93e-61 208
MsG0380013402.01.T01 MTR_0752s0020 39.583 240 121 4 3 237 27 247 4.19e-55 191
MsG0380013402.01.T01 MTR_6g052660 34.343 396 194 13 5 344 6 391 3.60e-54 189
MsG0380013402.01.T01 MTR_0195s0040 30.958 407 226 11 5 359 34 437 4.78e-51 180
MsG0380013402.01.T01 MTR_4g053915 34.062 320 162 6 8 285 36 348 3.19e-50 177
MsG0380013402.01.T01 MTR_7g068680 32.713 376 211 11 5 351 34 396 1.00e-48 170
MsG0380013402.01.T01 MTR_4g119430 34.314 306 159 6 5 272 33 334 1.40e-48 174
MsG0380013402.01.T01 MTR_6g047410 31.980 394 206 13 5 344 33 418 2.98e-48 175
MsG0380013402.01.T01 MTR_3g048350 31.618 408 206 12 5 351 6 401 7.54e-48 174
MsG0380013402.01.T01 MTR_1465s0010 32.398 392 170 12 5 342 22 372 1.55e-47 167
MsG0380013402.01.T01 MTR_7g009270 33.987 306 160 6 5 272 34 335 3.43e-47 172
MsG0380013402.01.T01 MTR_1g053665 37.063 286 155 7 51 328 24 292 1.25e-46 163
MsG0380013402.01.T01 MTR_7g099763 38.367 245 142 5 5 241 33 276 2.47e-46 160
MsG0380013402.01.T01 MTR_5g084777 38.645 251 137 6 5 243 33 278 2.49e-46 170
MsG0380013402.01.T01 MTR_0387s0030 32.258 372 166 8 1 336 25 346 2.92e-46 168
MsG0380013402.01.T01 MTR_0454s0020 31.319 364 199 8 7 322 147 507 2.42e-45 164
MsG0380013402.01.T01 MTR_5g459570 37.849 251 139 6 5 243 33 278 3.01e-45 165
MsG0380013402.01.T01 MTR_6g471790 37.849 251 139 6 5 243 33 278 5.82e-45 166
MsG0380013402.01.T01 MTR_0133s0060 37.849 251 139 6 5 243 33 278 7.07e-45 166
MsG0380013402.01.T01 MTR_8g012072 37.849 251 139 6 5 243 33 278 7.08e-45 166
MsG0380013402.01.T01 MTR_8g087757 37.849 251 139 6 5 243 33 278 7.44e-45 166
MsG0380013402.01.T01 MTR_3g436570 37.849 251 139 6 5 243 33 278 1.23e-44 165
MsG0380013402.01.T01 MTR_0547s0010 32.919 322 166 7 84 363 1 314 2.35e-44 159
MsG0380013402.01.T01 MTR_4g046907 32.919 322 166 7 84 363 1 314 2.84e-44 159
MsG0380013402.01.T01 MTR_7g024373 37.450 251 140 6 5 243 33 278 9.05e-44 162
MsG0380013402.01.T01 MTR_0132s0050 32.520 369 163 8 3 329 27 351 2.04e-43 158
MsG0380013402.01.T01 MTR_6g049080 32.372 312 144 5 1 285 25 296 3.66e-43 154
MsG0380013402.01.T01 MTR_5g056945 35.319 235 145 3 5 233 32 265 9.08e-43 152
MsG0380013402.01.T01 MTR_0015s0160 31.373 306 166 7 5 271 34 334 2.43e-40 150
MsG0380013402.01.T01 MTR_6g033905 32.215 298 125 7 5 272 34 284 4.05e-39 147
MsG0380013402.01.T01 MTR_0322s0040 27.536 414 216 12 5 370 34 411 1.44e-33 129
MsG0380013402.01.T01 MTR_8g468090 28.391 317 168 8 39 313 2 301 2.05e-32 127
MsG0380013402.01.T01 MTR_3g450160 33.654 208 126 3 43 241 1 205 2.29e-32 128
MsG0380013402.01.T01 MTR_6g464050 27.966 354 181 13 5 348 34 323 8.95e-30 122
MsG0380013402.01.T01 MTR_7g027027 40.120 167 92 4 5 164 33 198 3.10e-28 109
MsG0380013402.01.T01 MTR_0324s0040 27.586 290 162 6 77 322 10 295 7.73e-27 109
MsG0380013402.01.T01 MTR_5g056860 30.820 305 143 9 104 351 75 368 8.45e-27 112
MsG0380013402.01.T01 MTR_0002s0140 44.961 129 67 1 3 127 27 155 8.02e-25 102
MsG0380013402.01.T01 MTR_7g038780 24.217 351 200 11 5 313 34 360 4.89e-24 103
MsG0380013402.01.T01 MTR_1g099290 27.304 293 128 9 33 292 320 560 2.30e-22 99.0
MsG0380013402.01.T01 MTR_7g045830 31.429 245 128 3 1 241 1 209 4.36e-22 97.1
MsG0380013402.01.T01 MTR_0450s0010 29.268 205 104 4 154 319 1 203 1.68e-19 89.0
MsG0380013402.01.T01 MTR_5g049140 32.584 178 81 6 154 299 1 171 3.48e-19 89.4
MsG0380013402.01.T01 MTR_3g047110 43.056 72 38 1 175 246 30 98 1.87e-18 84.0
MsG0380013402.01.T01 MTR_1g052035 26.627 169 95 3 146 285 99 267 6.11e-15 75.1
MsG0380013402.01.T01 MTR_3g436840 50.725 69 34 0 1 69 27 95 4.64e-14 73.6
MsG0380013402.01.T01 MTR_1g423950 43.077 65 36 1 5 69 33 96 3.77e-12 63.2
MsG0380013402.01.T01 MTR_1638s0010 27.094 203 91 5 206 370 1 184 1.15e-11 65.9
MsG0380013402.01.T01 MTR_3g031890 42.466 73 39 2 5 75 34 105 1.69e-11 62.0
MsG0380013402.01.T01 MTR_3g035410 30.573 157 72 3 206 328 1 154 2.79e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTAGTGCTTTCGTTTA+TGG 0.073858 3:-36779367 None:intergenic
GGACTTTCCTCCCATCTTTA+AGG 0.153003 3:+36779616 MsG0380013402.01.T01:CDS
TGACTCTACTTGAACTATTA+AGG 0.226667 3:-36778761 None:intergenic
CTTCCTTCCTGACTATTTCT+TGG 0.228529 3:-36779113 None:intergenic
GAGATGATCCATTACATATC+TGG 0.266953 3:-36779337 None:intergenic
AGGTTACTACAACTCTCTTC+TGG 0.284802 3:+36779149 MsG0380013402.01.T01:CDS
GAGTATTTCAAGATGCTAAA+TGG 0.300004 3:+36778856 MsG0380013402.01.T01:CDS
TGAACTTGGTCAAGGACTTT+TGG 0.305016 3:+36778890 MsG0380013402.01.T01:CDS
CTGCTGAAACTGAGATAATC+AGG 0.323360 3:+36779594 MsG0380013402.01.T01:CDS
AAGGAAGATGTCCTGCTAAA+AGG 0.323997 3:+36779129 MsG0380013402.01.T01:CDS
ACGTCCTCAGTGATGGTTAT+AGG 0.334141 3:-36779051 None:intergenic
CATTTGATAGCTTAGAAATA+AGG 0.347561 3:+36779010 MsG0380013402.01.T01:CDS
CTGGCCTTCTTTCCTTTAGT+AGG 0.350006 3:-36779830 None:intergenic
GCTAGCTTCTGTTGGTTGTT+GGG 0.363964 3:-36779276 None:intergenic
TGCTAGCTTCTGTTGGTTGT+TGG 0.366897 3:-36779277 None:intergenic
TTCTGATTCAGAACTAGTTC+TGG 0.370653 3:-36779801 None:intergenic
TTCTGACTCAGTACTAGTTC+TGG 0.378125 3:-36779849 None:intergenic
GCTTCTGTTGGTTGTTGGGT+TGG 0.395902 3:-36779272 None:intergenic
ACGTTATAGCTAAAGCTTGT+AGG 0.401395 3:+36779070 MsG0380013402.01.T01:CDS
CTGAAATCTTTCATCAAGGA+AGG 0.411401 3:+36779424 MsG0380013402.01.T01:CDS
AGAGTCACTTTCCTTAAAGA+TGG 0.416859 3:-36779627 None:intergenic
CTGAGGCACCTGAAGGGAAA+AGG 0.432854 3:+36779777 MsG0380013402.01.T01:CDS
AAACAAGCGGGGTCAAAGAA+AGG 0.433658 3:+36778958 MsG0380013402.01.T01:CDS
GAAGATTCCAAGAAATAGTC+AGG 0.435830 3:+36779106 MsG0380013402.01.T01:CDS
AGTATTTCAAGATGCTAAAT+GGG 0.444412 3:+36778857 MsG0380013402.01.T01:CDS
GGTTACTACAACTCTCTTCT+GGG 0.459886 3:+36779150 MsG0380013402.01.T01:CDS
GAGGAAGCTGCTCTTGCTAA+AGG 0.460692 3:+36779707 MsG0380013402.01.T01:CDS
GGAGGAAGATGCAAGGTCTC+AGG 0.471195 3:+36779685 MsG0380013402.01.T01:CDS
ATGTAATGGATCATCTCTGC+TGG 0.475466 3:+36779343 MsG0380013402.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 3:+36779023 MsG0380013402.01.T01:CDS
AGGAAGCTGCTCTTGCTAAA+GGG 0.478652 3:+36779708 MsG0380013402.01.T01:CDS
AGATGATCCATTACATATCT+GGG 0.479286 3:-36779336 None:intergenic
GATTGCTTCTTTCAAAGAGC+AGG 0.488635 3:+36779240 MsG0380013402.01.T01:CDS
TCTAAGCTATCAAATGATGT+AGG 0.490834 3:-36779003 None:intergenic
AATCTCCATCTCTGAAGGCT+TGG 0.493755 3:-36779187 None:intergenic
AGAAGACTATGGATATTCCA+TGG 0.493905 3:+36778734 None:intergenic
AACAAGCGGGGTCAAAGAAA+GGG 0.497240 3:+36778959 MsG0380013402.01.T01:CDS
CTTTCTGAAATCTTTCATCA+AGG 0.500156 3:+36779420 MsG0380013402.01.T01:CDS
TGCTCCTACTAAAGGAAAGA+AGG 0.500403 3:+36779826 MsG0380013402.01.T01:CDS
TCAGAAGCTGCTCCTACTAA+AGG 0.501410 3:+36779818 MsG0380013402.01.T01:CDS
AAACTTCCCCAGATATGTAA+TGG 0.502711 3:+36779329 MsG0380013402.01.T01:CDS
TGAGGCACCTGAAGGGAAAA+GGG 0.508588 3:+36779778 MsG0380013402.01.T01:CDS
TTCTGACACAGCAACTGCCT+TGG 0.513583 3:-36779744 None:intergenic
TTGTGAATCTCCATCTCTGA+AGG 0.525037 3:-36779192 None:intergenic
CCACAAAGAGAGAAAAGGTA+AGG 0.525750 3:+36779935 MsG0380013402.01.T01:CDS
ATCAGTAGCTGAGTACGTCT+TGG 0.528893 3:+36779664 MsG0380013402.01.T01:CDS
TGGGCCAACATATGTGAACT+TGG 0.531084 3:+36778876 MsG0380013402.01.T01:CDS
AGATGCCAAGCCTTCAGAGA+TGG 0.532631 3:+36779182 MsG0380013402.01.T01:CDS
GGAAGAAAACAAGTACCCTA+TGG 0.532902 3:+36779390 MsG0380013402.01.T01:CDS
TTGACCAAGTTCACATATGT+TGG 0.534216 3:-36778880 None:intergenic
AATAAATTGCTAGCTTCTGT+TGG 0.537457 3:-36779284 None:intergenic
GAGTCACTTTCCTTAAAGAT+GGG 0.539345 3:-36779626 None:intergenic
GTCAGAAGCTGCTGTTTCTG+AGG 0.546489 3:+36779760 MsG0380013402.01.T01:CDS
GGGGTCAAAGAAAGGGAAAA+TGG 0.549767 3:+36778966 MsG0380013402.01.T01:CDS
CTATTCCACAAAGAGAGAAA+AGG 0.549920 3:+36779930 MsG0380013402.01.T01:CDS
AGCTATAACGTCCTCAGTGA+TGG 0.550655 3:-36779058 None:intergenic
TTCAGAAAGCAATCTTCCAT+AGG 0.552612 3:-36779406 None:intergenic
TCAGAAAGCAATCTTCCATA+GGG 0.557355 3:-36779405 None:intergenic
TGCTAAAGGGAAAGGCAAGA+AGG 0.557921 3:+36779721 MsG0380013402.01.T01:CDS
TGCTTCTTTCAAAGAGCAGG+AGG 0.557950 3:+36779243 MsG0380013402.01.T01:CDS
GCTGTTTCTGAGGCACCTGA+AGG 0.558597 3:+36779770 MsG0380013402.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG 0.558761 3:+36779558 MsG0380013402.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 3:+36779024 MsG0380013402.01.T01:CDS
ATTCCAAGAAATAGTCAGGA+AGG 0.562379 3:+36779110 MsG0380013402.01.T01:CDS
AGGGAAAGGCAAGAAGGCCA+AGG 0.562667 3:+36779727 MsG0380013402.01.T01:CDS
TGAAATCTTTCATCAAGGAA+GGG 0.566658 3:+36779425 MsG0380013402.01.T01:CDS
CAAGAAGTATGAAGTAAACA+TGG 0.567275 3:+36778804 MsG0380013402.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG 0.567877 3:+36778972 MsG0380013402.01.T01:CDS
AGTAGCTGAGTACGTCTTGG+AGG 0.574153 3:+36779667 MsG0380013402.01.T01:CDS
AAAGTCGTAAGCAAACAAGC+GGG 0.575672 3:+36778946 MsG0380013402.01.T01:CDS
TGAACTATTAAGGATTCCCA+TGG 0.576043 3:-36778751 None:intergenic
GCTGCTCTTGCTAAAGGGAA+AGG 0.581656 3:+36779713 MsG0380013402.01.T01:CDS
GGAGATTCACAACAGAATGT+TGG 0.585255 3:+36779203 MsG0380013402.01.T01:CDS
ACTCAGCTACTGATTGAACT+AGG 0.585948 3:-36779655 None:intergenic
AAAGGAAAGATGCAGAAGGT+TGG 0.591290 3:+36779899 MsG0380013402.01.T01:CDS
GAAGACTATGGATATTCCAT+GGG 0.592173 3:+36778735 None:intergenic
AATAGTTCAAGTAGAGTCAC+CGG 0.592431 3:+36778765 MsG0380013402.01.T01:CDS
GCTTGTAGGATGCATGCAGA+GGG 0.594259 3:+36779084 MsG0380013402.01.T01:CDS
CTGTTTCTGAGGCACCTGAA+GGG 0.606340 3:+36779771 MsG0380013402.01.T01:CDS
TCACTTTCCTTAAAGATGGG+AGG 0.608137 3:-36779623 None:intergenic
ACTACAACTCTCTTCTGGGT+GGG 0.610143 3:+36779154 MsG0380013402.01.T01:CDS
TGTAATGGATCATCTCTGCT+GGG 0.612052 3:+36779344 MsG0380013402.01.T01:CDS
AAGTATGAAGTAAACATGGA+AGG 0.619293 3:+36778808 MsG0380013402.01.T01:CDS
AGCTTGTAGGATGCATGCAG+AGG 0.622944 3:+36779083 MsG0380013402.01.T01:CDS
TGCTGAAACTGAGATAATCA+GGG 0.625436 3:+36779595 MsG0380013402.01.T01:CDS
TTGAGTGAAGCAAAATCCAC+CGG 0.625573 3:-36778784 None:intergenic
AACATATGTGAACTTGGTCA+AGG 0.631522 3:+36778882 MsG0380013402.01.T01:CDS
GGAAGATGCAAGGTCTCAGG+AGG 0.637501 3:+36779688 MsG0380013402.01.T01:CDS
GCTTCTTTCAAAGAGCAGGA+GGG 0.637986 3:+36779244 MsG0380013402.01.T01:CDS
AAAAGTCGTAAGCAAACAAG+CGG 0.638533 3:+36778945 MsG0380013402.01.T01:CDS
TACTACAACTCTCTTCTGGG+TGG 0.642887 3:+36779153 MsG0380013402.01.T01:CDS
ATAAACGAAAGCACTACAAG+AGG 0.648175 3:+36779369 MsG0380013402.01.T01:CDS
ACGTCTTGGAGGAAGATGCA+AGG 0.665341 3:+36779678 MsG0380013402.01.T01:CDS
GATGATCCATTACATATCTG+GGG 0.671983 3:-36779335 None:intergenic
AAGTCGTAAGCAAACAAGCG+GGG 0.690062 3:+36778947 MsG0380013402.01.T01:CDS
AGTTCAAGTAGAGTCACCGG+TGG 0.701435 3:+36778768 MsG0380013402.01.T01:CDS
CATTCCTATAACCATCACTG+AGG 0.778544 3:+36779047 MsG0380013402.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATTTCAAGATGCTAAAT+GGG + Chr3:36778857-36778876 MsG0380013402.01.T01:CDS 25.0%
!! CATTTGATAGCTTAGAAATA+AGG + Chr3:36779010-36779029 MsG0380013402.01.T01:CDS 25.0%
!!! GAAGTTTATCTTTTCAAGAT+TGG - Chr3:36779316-36779335 None:intergenic 25.0%
AAGTATGAAGTAAACATGGA+AGG + Chr3:36778808-36778827 MsG0380013402.01.T01:CDS 30.0%
AGATGATCCATTACATATCT+GGG - Chr3:36779339-36779358 None:intergenic 30.0%
GAGTATTTCAAGATGCTAAA+TGG + Chr3:36778856-36778875 MsG0380013402.01.T01:CDS 30.0%
TCTAAGCTATCAAATGATGT+AGG - Chr3:36779006-36779025 None:intergenic 30.0%
TGAAATCTTTCATCAAGGAA+GGG + Chr3:36779425-36779444 MsG0380013402.01.T01:CDS 30.0%
TGACTCTACTTGAACTATTA+AGG - Chr3:36778764-36778783 None:intergenic 30.0%
! AATAAATTGCTAGCTTCTGT+TGG - Chr3:36779287-36779306 None:intergenic 30.0%
! CAAGAAGTATGAAGTAAACA+TGG + Chr3:36778804-36778823 MsG0380013402.01.T01:CDS 30.0%
! CCTTTTTCCTTGATAAAAAC+AGG - Chr3:36779884-36779903 None:intergenic 30.0%
!! CTAACCACTTTTCATCTTTA+GGG - Chr3:36779565-36779584 None:intergenic 30.0%
!! CTTTCTGAAATCTTTCATCA+AGG + Chr3:36779420-36779439 MsG0380013402.01.T01:CDS 30.0%
!! TAACCACTTTTCATCTTTAG+GGG - Chr3:36779564-36779583 None:intergenic 30.0%
!! TCTAACCACTTTTCATCTTT+AGG - Chr3:36779566-36779585 None:intergenic 30.0%
!!! CCTGTTTTTATCAAGGAAAA+AGG + Chr3:36779881-36779900 MsG0380013402.01.T01:CDS 30.0%
!!! TGCTAAACCTGTTTTTATCA+AGG + Chr3:36779874-36779893 MsG0380013402.01.T01:CDS 30.0%
AAAAGTCGTAAGCAAACAAG+CGG + Chr3:36778945-36778964 MsG0380013402.01.T01:CDS 35.0%
AAACTTCCCCAGATATGTAA+TGG + Chr3:36779329-36779348 MsG0380013402.01.T01:CDS 35.0%
AAAGAAAGGGAAAATGGTCA+TGG + Chr3:36778972-36778991 MsG0380013402.01.T01:CDS 35.0%
AACATATGTGAACTTGGTCA+AGG + Chr3:36778882-36778901 MsG0380013402.01.T01:CDS 35.0%
AATAGTTCAAGTAGAGTCAC+CGG + Chr3:36778765-36778784 MsG0380013402.01.T01:CDS 35.0%
ACGTTATAGCTAAAGCTTGT+AGG + Chr3:36779070-36779089 MsG0380013402.01.T01:CDS 35.0%
ATTCCAAGAAATAGTCAGGA+AGG + Chr3:36779110-36779129 MsG0380013402.01.T01:CDS 35.0%
CTATTCCACAAAGAGAGAAA+AGG + Chr3:36779930-36779949 MsG0380013402.01.T01:CDS 35.0%
CTGAAATCTTTCATCAAGGA+AGG + Chr3:36779424-36779443 MsG0380013402.01.T01:CDS 35.0%
GAAGATTCCAAGAAATAGTC+AGG + Chr3:36779106-36779125 MsG0380013402.01.T01:CDS 35.0%
GAGATGATCCATTACATATC+TGG - Chr3:36779340-36779359 None:intergenic 35.0%
GATGATCCATTACATATCTG+GGG - Chr3:36779338-36779357 None:intergenic 35.0%
TCAGAAAGCAATCTTCCATA+GGG - Chr3:36779408-36779427 None:intergenic 35.0%
TCTTGTAGTGCTTTCGTTTA+TGG - Chr3:36779370-36779389 None:intergenic 35.0%
TGAACTATTAAGGATTCCCA+TGG - Chr3:36778754-36778773 None:intergenic 35.0%
TGCTGAAACTGAGATAATCA+GGG + Chr3:36779595-36779614 MsG0380013402.01.T01:CDS 35.0%
TGGAGTTCTTAAAAAGGACA+AGG + Chr3:36779451-36779470 MsG0380013402.01.T01:intron 35.0%
TTCAGAAAGCAATCTTCCAT+AGG - Chr3:36779409-36779428 None:intergenic 35.0%
TTCTGATTCAGAACTAGTTC+TGG - Chr3:36779804-36779823 None:intergenic 35.0%
TTGACCAAGTTCACATATGT+TGG - Chr3:36778883-36778902 None:intergenic 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG + Chr3:36779023-36779042 MsG0380013402.01.T01:CDS 35.0%
! AGAGTCACTTTCCTTAAAGA+TGG - Chr3:36779630-36779649 None:intergenic 35.0%
! AGTTGTAGTAACCTTTTAGC+AGG - Chr3:36779143-36779162 None:intergenic 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG + Chr3:36779024-36779043 MsG0380013402.01.T01:CDS 35.0%
! GAGTCACTTTCCTTAAAGAT+GGG - Chr3:36779629-36779648 None:intergenic 35.0%
!! ATAAACGAAAGCACTACAAG+AGG + Chr3:36779369-36779388 MsG0380013402.01.T01:CDS 35.0%
AAAGGAAAGATGCAGAAGGT+TGG + Chr3:36779899-36779918 MsG0380013402.01.T01:CDS 40.0%
AAAGTCGTAAGCAAACAAGC+GGG + Chr3:36778946-36778965 MsG0380013402.01.T01:CDS 40.0%
AAGCCCCTAAAGATGAAAAG+TGG + Chr3:36779558-36779577 MsG0380013402.01.T01:CDS 40.0%
AAGGAAGATGTCCTGCTAAA+AGG + Chr3:36779129-36779148 MsG0380013402.01.T01:CDS 40.0%
AGGTTACTACAACTCTCTTC+TGG + Chr3:36779149-36779168 MsG0380013402.01.T01:CDS 40.0%
CATTCCTATAACCATCACTG+AGG + Chr3:36779047-36779066 MsG0380013402.01.T01:CDS 40.0%
CTGCTGAAACTGAGATAATC+AGG + Chr3:36779594-36779613 MsG0380013402.01.T01:CDS 40.0%
GATTGCTTCTTTCAAAGAGC+AGG + Chr3:36779240-36779259 MsG0380013402.01.T01:CDS 40.0%
GGAAAAAGGAAAGATGCAGA+AGG + Chr3:36779895-36779914 MsG0380013402.01.T01:CDS 40.0%
GGAAGAAAACAAGTACCCTA+TGG + Chr3:36779390-36779409 MsG0380013402.01.T01:CDS 40.0%
GGAGATTCACAACAGAATGT+TGG + Chr3:36779203-36779222 MsG0380013402.01.T01:CDS 40.0%
GGTTACTACAACTCTCTTCT+GGG + Chr3:36779150-36779169 MsG0380013402.01.T01:CDS 40.0%
TCACTTTCCTTAAAGATGGG+AGG - Chr3:36779626-36779645 None:intergenic 40.0%
TCGAAGTTTCTACTGCTGAA+AGG + Chr3:36779493-36779512 MsG0380013402.01.T01:intron 40.0%
TGCTCCTACTAAAGGAAAGA+AGG + Chr3:36779826-36779845 MsG0380013402.01.T01:CDS 40.0%
TTCTGACTCAGTACTAGTTC+TGG - Chr3:36779852-36779871 None:intergenic 40.0%
TTGAGTGAAGCAAAATCCAC+CGG - Chr3:36778787-36778806 None:intergenic 40.0%
TTGTGAATCTCCATCTCTGA+AGG - Chr3:36779195-36779214 None:intergenic 40.0%
! ACTCAGCTACTGATTGAACT+AGG - Chr3:36779658-36779677 None:intergenic 40.0%
! CTTCCTTCCTGACTATTTCT+TGG - Chr3:36779116-36779135 None:intergenic 40.0%
! TGAACTTGGTCAAGGACTTT+TGG + Chr3:36778890-36778909 MsG0380013402.01.T01:CDS 40.0%
! TGTTTGCTTACGACTTTTGC+AGG - Chr3:36778943-36778962 None:intergenic 40.0%
!! ATGTAATGGATCATCTCTGC+TGG + Chr3:36779343-36779362 MsG0380013402.01.T01:CDS 40.0%
!! TGTAATGGATCATCTCTGCT+GGG + Chr3:36779344-36779363 MsG0380013402.01.T01:CDS 40.0%
AAACAAGCGGGGTCAAAGAA+AGG + Chr3:36778958-36778977 MsG0380013402.01.T01:CDS 45.0%
AACAAGCGGGGTCAAAGAAA+GGG + Chr3:36778959-36778978 MsG0380013402.01.T01:CDS 45.0%
AAGTCGTAAGCAAACAAGCG+GGG + Chr3:36778947-36778966 MsG0380013402.01.T01:CDS 45.0%
ACGTCCTCAGTGATGGTTAT+AGG - Chr3:36779054-36779073 None:intergenic 45.0%
ACTACAACTCTCTTCTGGGT+GGG + Chr3:36779154-36779173 MsG0380013402.01.T01:CDS 45.0%
AGCTATAACGTCCTCAGTGA+TGG - Chr3:36779061-36779080 None:intergenic 45.0%
AGGAAGCTGCTCTTGCTAAA+GGG + Chr3:36779708-36779727 MsG0380013402.01.T01:CDS 45.0%
ATCAGTAGCTGAGTACGTCT+TGG + Chr3:36779664-36779683 MsG0380013402.01.T01:CDS 45.0%
GCTTCTTTCAAAGAGCAGGA+GGG + Chr3:36779244-36779263 MsG0380013402.01.T01:CDS 45.0%
GGACTTTCCTCCCATCTTTA+AGG + Chr3:36779616-36779635 MsG0380013402.01.T01:CDS 45.0%
GGGGTCAAAGAAAGGGAAAA+TGG + Chr3:36778966-36778985 MsG0380013402.01.T01:CDS 45.0%
TACTACAACTCTCTTCTGGG+TGG + Chr3:36779153-36779172 MsG0380013402.01.T01:CDS 45.0%
TCAGAAGCTGCTCCTACTAA+AGG + Chr3:36779818-36779837 MsG0380013402.01.T01:CDS 45.0%
TGCTAAAGGGAAAGGCAAGA+AGG + Chr3:36779721-36779740 MsG0380013402.01.T01:CDS 45.0%
TGCTTCTTTCAAAGAGCAGG+AGG + Chr3:36779243-36779262 MsG0380013402.01.T01:CDS 45.0%
TGGGCCAACATATGTGAACT+TGG + Chr3:36778876-36778895 MsG0380013402.01.T01:CDS 45.0%
! AATCTCCATCTCTGAAGGCT+TGG - Chr3:36779190-36779209 None:intergenic 45.0%
! CTGGCCTTCTTTCCTTTAGT+AGG - Chr3:36779833-36779852 None:intergenic 45.0%
! GCTAGCTTCTGTTGGTTGTT+GGG - Chr3:36779279-36779298 None:intergenic 45.0%
! TGCTAGCTTCTGTTGGTTGT+TGG - Chr3:36779280-36779299 None:intergenic 45.0%
!! GGGTGCTGGAGTTCTTAAAA+AGG + Chr3:36779445-36779464 MsG0380013402.01.T01:intron 45.0%
ACGTCTTGGAGGAAGATGCA+AGG + Chr3:36779678-36779697 MsG0380013402.01.T01:CDS 50.0%
AGATGCCAAGCCTTCAGAGA+TGG + Chr3:36779182-36779201 MsG0380013402.01.T01:CDS 50.0%
AGCTTGTAGGATGCATGCAG+AGG + Chr3:36779083-36779102 MsG0380013402.01.T01:CDS 50.0%
AGTAGCTGAGTACGTCTTGG+AGG + Chr3:36779667-36779686 MsG0380013402.01.T01:CDS 50.0%
AGTTCAAGTAGAGTCACCGG+TGG + Chr3:36778768-36778787 MsG0380013402.01.T01:CDS 50.0%
GAGGAAGCTGCTCTTGCTAA+AGG + Chr3:36779707-36779726 MsG0380013402.01.T01:CDS 50.0%
GCTGCTCTTGCTAAAGGGAA+AGG + Chr3:36779713-36779732 MsG0380013402.01.T01:CDS 50.0%
GCTTGTAGGATGCATGCAGA+GGG + Chr3:36779084-36779103 MsG0380013402.01.T01:CDS 50.0%
TTCTGACACAGCAACTGCCT+TGG - Chr3:36779747-36779766 None:intergenic 50.0%
! CTTTCATCAAGGAAGGGTGC+TGG + Chr3:36779431-36779450 MsG0380013402.01.T01:intron 50.0%
! GCTTCTGTTGGTTGTTGGGT+TGG - Chr3:36779275-36779294 None:intergenic 50.0%
! TGAGGCACCTGAAGGGAAAA+GGG + Chr3:36779778-36779797 MsG0380013402.01.T01:CDS 50.0%
!! CTGTTTCTGAGGCACCTGAA+GGG + Chr3:36779771-36779790 MsG0380013402.01.T01:CDS 50.0%
!! GTCAGAAGCTGCTGTTTCTG+AGG + Chr3:36779760-36779779 MsG0380013402.01.T01:CDS 50.0%
AGGGAAAGGCAAGAAGGCCA+AGG + Chr3:36779727-36779746 MsG0380013402.01.T01:CDS 55.0%
GGAAGATGCAAGGTCTCAGG+AGG + Chr3:36779688-36779707 MsG0380013402.01.T01:CDS 55.0%
GGAGGAAGATGCAAGGTCTC+AGG + Chr3:36779685-36779704 MsG0380013402.01.T01:CDS 55.0%
! CTGAGGCACCTGAAGGGAAA+AGG + Chr3:36779777-36779796 MsG0380013402.01.T01:CDS 55.0%
! GTTCTGGCCCTTTTCCCTTC+AGG - Chr3:36779788-36779807 None:intergenic 55.0%
!! GCTGTTTCTGAGGCACCTGA+AGG + Chr3:36779770-36779789 MsG0380013402.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 36778742 36779955 36778742 ID=MsG0380013402.01;Name=MsG0380013402.01
Chr3 mRNA 36778742 36779955 36778742 ID=MsG0380013402.01.T01;Parent=MsG0380013402.01;Name=MsG0380013402.01.T01;_AED=0.42;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|376
Chr3 exon 36778742 36779446 36778742 ID=MsG0380013402.01.T01:exon:7709;Parent=MsG0380013402.01.T01
Chr3 exon 36779530 36779955 36779530 ID=MsG0380013402.01.T01:exon:7710;Parent=MsG0380013402.01.T01
Chr3 CDS 36778742 36779446 36778742 ID=MsG0380013402.01.T01:cds;Parent=MsG0380013402.01.T01
Chr3 CDS 36779530 36779955 36779530 ID=MsG0380013402.01.T01:cds;Parent=MsG0380013402.01.T01
Gene Sequence

>MsG0380013402.01.T01

ATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGTTTGATAGAAACTCAGATGATGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCGGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGCATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTAAAAGGTTACTACAACTCTCTTCTGGGTGGGAAGAAAGATGCCAAGCCTTCAGAGATGGAGATTCACAACAGAATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGGTCTGACCAACCCAACAACCAACAGAAGCTAGCAATTTATTTCATGACCAATCTTGAAAAGATAAACTTCCCCAGATATGTAATGGATCATCTCTGCTGGGCCATAAACGAAAGCACTACAAGAGGAAGAAAACAAGTACCCTATGGAAGATTGCTTTCTGAAATCTTTCATCAAGGAAGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTGACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTACGTCTTGGAGGAAGATGCAAGGTCTCAGGAGGAAGCTGCTCTTGCTAAAGGGAAAGGCAAGAAGGCCAAGGCAGTTGCTGTGTCAGAAGCTGCTGTTTCTGAGGCACCTGAAGGGAAAAGGGCCAGAACTAGTTCTGAATCAGAAGCTGCTCCTACTAAAGGAAAGAAGGCCAGAACTAGTACTGAGTCAGAAGCTGCTAAACCTGTTTTTATCAAGGAAAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCACAAAGAGAGAAAAGGTAA
Protein sequence

>MsG0380013402.01.T01

MDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMMSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMHAEGRFQEIVRKEDVLLKGYYNSLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMTNLEKINFPRYVMDHLCWAINESTTRGRKQVPYGRLLSEIFHQGRSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESDSDFLVQSVAEYVLEEDARSQEEAALAKGKGKKAKAVAVSEAAVSEAPEGKRARTSSESEAAPTKGKKARTSTESEAAKPVFIKEKGKMQKVGAASIPQREKR*