AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013894.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013894.01.T01 MTR_3g050860 59.078 347 122 4 1 338 1 336 1.33e-118 359
MsG0380013894.01.T01 MTR_3g050860 70.115 261 53 4 412 671 2 238 4.76e-110 337
MsG0380013894.01.T01 MTR_0439s0020 73.427 143 37 1 1 142 1 143 8.66e-67 216
MsG0380013894.01.T01 MTR_0439s0020 59.859 142 54 3 413 552 3 143 1.56e-47 164
MsG0380013894.01.T01 MTR_4g074930 52.101 119 48 2 258 371 329 443 8.55e-25 109
MsG0380013894.01.T01 MTR_4g074930 75.000 48 12 0 215 262 11 58 4.00e-12 69.7
MsG0380013894.01.T01 MTR_4g074930 52.632 114 43 3 568 671 27 139 7.87e-11 65.9
MsG0380013894.01.T01 MTR_4g074930 52.101 119 48 2 258 371 364 478 9.15e-25 110
MsG0380013894.01.T01 MTR_4g074930 75.000 48 12 0 215 262 11 58 4.31e-12 69.7
MsG0380013894.01.T01 MTR_4g074930 45.033 151 33 3 568 671 27 174 2.94e-11 67.0
MsG0380013894.01.T01 MTR_4g074930 52.101 119 48 2 258 371 376 490 9.47e-25 110
MsG0380013894.01.T01 MTR_4g074930 75.000 48 12 0 215 262 11 58 4.34e-12 69.7
MsG0380013894.01.T01 MTR_4g074930 45.033 151 33 3 568 671 27 174 2.81e-11 67.0
MsG0380013894.01.T01 MTR_4g074930 52.101 119 48 2 258 371 341 455 9.69e-25 109
MsG0380013894.01.T01 MTR_4g074930 75.000 48 12 0 215 262 11 58 4.11e-12 69.7
MsG0380013894.01.T01 MTR_4g074930 52.632 114 43 3 568 671 27 139 7.99e-11 65.9
MsG0380013894.01.T01 MTR_3g034200 33.333 159 92 6 416 563 2 157 2.19e-13 69.3
MsG0380013894.01.T01 MTR_1g036430 39.252 107 62 1 250 356 154 257 9.13e-13 72.0
MsG0380013894.01.T01 MTR_3g030055 31.897 116 73 3 447 562 44 153 4.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013894.01.T01 AT3G18610 41.538 130 63 3 247 371 373 494 5.90e-18 88.6
MsG0380013894.01.T01 AT3G18610 41.538 130 63 3 247 371 343 464 5.97e-18 88.6
MsG0380013894.01.T01 AT3G18610 41.538 130 63 3 247 371 313 434 6.75e-18 88.2
MsG0380013894.01.T01 AT1G48920 36.800 125 73 2 253 371 292 416 2.91e-14 76.6
MsG0380013894.01.T01 AT5G13780 33.121 157 91 6 416 561 2 155 2.12e-11 63.9
MsG0380013894.01.T01 AT5G41690 45.055 91 48 2 250 339 300 389 5.05e-11 66.2
MsG0380013894.01.T01 AT5G41690 45.055 91 48 2 250 339 300 389 5.05e-11 66.2
MsG0380013894.01.T01 AT5G41690 45.055 91 48 2 250 339 300 389 5.05e-11 66.2
MsG0380013894.01.T01 AT1G45100 43.011 93 53 0 252 344 241 333 5.81e-11 65.9
MsG0380013894.01.T01 AT3G48840 42.391 92 50 2 250 339 32 122 9.92e-11 62.0

Find 179 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCTTGCATAACGAATT+TGG 0.093195 3:-47555183 None:intergenic
GAAGCTGTTTCTTCTAAAAT+AGG 0.182499 3:+47554944 MsG0380013894.01.T01:CDS
TGCGGGTGCACTTCCTATTT+TGG 0.183725 3:-47557566 None:intergenic
TAAAGATCGTCTTTCTTTAC+AGG 0.196172 3:-47557352 None:intergenic
CAAGGATATCCTCTTATTAT+TGG 0.202894 3:+47553954 MsG0380013894.01.T01:CDS
GAAGTTGTTCCTTCCAAAAT+AGG 0.222757 3:+47557553 MsG0380013894.01.T01:CDS
GAAGAAACAGCTTCTGCTTC+AGG 0.224450 3:-47554935 None:intergenic
AAGTGAAGTTATTACATCTT+AGG 0.242413 3:+47551809 MsG0380013894.01.T01:CDS
GGAGGCTTTGTCAGGGGTTT+TGG 0.242686 3:+47554104 MsG0380013894.01.T01:CDS
CAGAAGATTCGTCAGATTCT+TGG 0.263120 3:-47557609 None:intergenic
AATGCGTCAGTGTTGGTCTT+TGG 0.291887 3:-47551377 None:intergenic
GAACTATCAGCCTTCTTTGC+GGG 0.314916 3:-47557583 None:intergenic
AAGCTGTTACTTCTAAAATA+AGG 0.322995 3:+47551981 MsG0380013894.01.T01:CDS
AGAGGATATCCTTGAGGATA+TGG 0.327826 3:-47553945 None:intergenic
TCATCTTCTGAAGAATCTTC+TGG 0.335928 3:+47557379 MsG0380013894.01.T01:CDS
TGTTGACCTATATAAGATTC+TGG 0.336459 3:+47550924 MsG0380013894.01.T01:CDS
ACTCCTTCTCTCCGAAAGAT+AGG 0.337370 3:-47555424 None:intergenic
GTTGATGTATGTCTTGGTTA+TGG 0.353092 3:+47553693 MsG0380013894.01.T01:CDS
TGACGTGGATCTTGAAAGTT+TGG 0.353226 3:+47555279 MsG0380013894.01.T01:CDS
GAGGATATGGACGCCACTCC+CGG 0.354161 3:-47553932 None:intergenic
TTCTACAACGATGGTGTCCC+CGG 0.363342 3:+47550876 None:intergenic
ATATCTTGCATAACGAATTT+GGG 0.364033 3:-47555182 None:intergenic
ATGTCGAGAGCTTACGCGTT+TGG 0.366733 3:-47553772 None:intergenic
ACTTGTGACCATGGCTGAAA+TGG 0.368546 3:+47551143 MsG0380013894.01.T01:CDS
CAAGAATCTGACGAATCTTC+TGG 0.369595 3:+47557610 MsG0380013894.01.T01:CDS
AAGCTGTTTCTTCTAAAATA+GGG 0.371461 3:+47554945 MsG0380013894.01.T01:CDS
GTGGCGGAGGAGGCTTTGTC+AGG 0.376610 3:+47554096 MsG0380013894.01.T01:CDS
TTGGTTATGGTAAGAGAAAA+AGG 0.378545 3:+47553706 MsG0380013894.01.T01:CDS
GTCAGATTCTTGCGCCTTGA+AGG 0.379387 3:-47553560 None:intergenic
ATTACTCTTCTTCGAAAAGA+TGG 0.379614 3:+47551397 MsG0380013894.01.T01:CDS
ATCCATCAGAGTTGGTCTTC+GGG 0.381778 3:-47555734 None:intergenic
TCTTCGTTAGCCCTATCTTT+CGG 0.385024 3:+47551100 MsG0380013894.01.T01:CDS
ATGCGTCAGTGTTGGTCTTT+GGG 0.387142 3:-47551376 None:intergenic
TCACTTCACGAGGCTCGTTC+AGG 0.391717 3:-47551792 None:intergenic
GAAGTAACAGCTTCTGCTGC+AGG 0.395666 3:-47551971 None:intergenic
AATAGGCACTTGATAAGAAT+GGG 0.408077 3:+47553871 MsG0380013894.01.T01:intron
CAACAACCATCCCACAATCT+TGG 0.409109 3:-47553674 None:intergenic
ATTACTCTTCTTCGAAAAGA+TGG 0.410597 3:+47555755 MsG0380013894.01.T01:CDS
TGACGTGGATACTCAAAGTT+TGG 0.414598 3:+47550963 MsG0380013894.01.T01:CDS
GCGTTTCTTAAGACCACATC+CGG 0.415976 3:-47555211 None:intergenic
TCTTCGTTAACCCTATCTTT+CGG 0.418866 3:+47555413 MsG0380013894.01.T01:CDS
GTGAAGAGCAATAGTATTGA+TGG 0.420089 3:+47551437 MsG0380013894.01.T01:CDS
AATCCATCAGAGTTGGTCTT+CGG 0.430864 3:-47555735 None:intergenic
AGCCCTATCTTTCGGAGAAA+AGG 0.431404 3:+47551108 MsG0380013894.01.T01:CDS
GTGAAGAGCAATTATATTGA+TGG 0.434863 3:+47555795 MsG0380013894.01.T01:CDS
AACGATGGTGTCCCCGGGTG+TGG 0.437378 3:+47550882 None:intergenic
AGAATCTTATATAGGTCAAC+AGG 0.439517 3:-47550922 None:intergenic
TGTTGGGAACTTATCCTTCA+AGG 0.439527 3:+47553546 MsG0380013894.01.T01:CDS
AGTGAAGTTATTACATCTTA+GGG 0.441387 3:+47551810 MsG0380013894.01.T01:CDS
GGCTGAAATGGACTTGGAAA+AGG 0.444198 3:+47551155 MsG0380013894.01.T01:CDS
AAGAAACAGCTTCTGCTTCA+GGG 0.451779 3:-47554934 None:intergenic
GAAGGAACAACTTCTGCTGC+AGG 0.453852 3:-47557544 None:intergenic
TAATAGGCACTTGATAAGAA+TGG 0.456193 3:+47553870 MsG0380013894.01.T01:intron
TGAAAAGGACTTGAGGGATA+AGG 0.466500 3:+47555471 MsG0380013894.01.T01:CDS
ACTTGTGGAAAGCGCTGAAA+AGG 0.467490 3:+47555456 MsG0380013894.01.T01:CDS
AAAGATAGGGTTAACGAAGA+TGG 0.472513 3:-47555410 None:intergenic
CTTCGAAAAGATGGGTTATG+AGG 0.474734 3:+47551406 MsG0380013894.01.T01:CDS
TCAGCTGAAAGTGGCGGAGG+AGG 0.475866 3:+47554086 MsG0380013894.01.T01:CDS
CTTTCGAAGACAATATATGT+TGG 0.475870 3:+47553529 MsG0380013894.01.T01:intron
TAAGAGTAATGGAGAGGATG+AGG 0.477121 3:+47554127 MsG0380013894.01.T01:CDS
TTTCGAAGACAATATATGTT+GGG 0.477167 3:+47553530 MsG0380013894.01.T01:intron
TCAGAGTTGGTCTTCGGGAC+GGG 0.477721 3:-47555729 None:intergenic
TCTAATACCTCATCTTCATC+AGG 0.477800 3:-47551838 None:intergenic
AATTACCTTCCAATAATAAG+AGG 0.478964 3:-47553963 None:intergenic
GATCTTGAAAGTTTGGAGAA+TGG 0.482941 3:+47555286 MsG0380013894.01.T01:CDS
TGCCAAACAAAAGGTATTGA+AGG 0.484854 3:+47557140 MsG0380013894.01.T01:CDS
TTACTCTTCTTCGAAAAGAT+GGG 0.485859 3:+47555756 MsG0380013894.01.T01:CDS
TGATAGTTCTGATGAAGAAT+CGG 0.491538 3:+47552024 MsG0380013894.01.T01:CDS
ATGGTTGTTGATGTATGTCT+TGG 0.492873 3:+47553687 MsG0380013894.01.T01:CDS
GAACTGAAGCGTACTAGTTA+CGG 0.493616 3:+47551063 MsG0380013894.01.T01:CDS
GACTTCAAGAAGCCCGGGAG+TGG 0.494287 3:+47553919 MsG0380013894.01.T01:CDS
AGGAAGTGCACCCGCAAAGA+AGG 0.501050 3:+47557573 MsG0380013894.01.T01:CDS
AACCCTATCTTTCGGAGAGA+AGG 0.502877 3:+47555421 MsG0380013894.01.T01:CDS
GTCAGTGTTGGTCTTTGGGA+TGG 0.506964 3:-47551372 None:intergenic
TTACTCTTCTTCGAAAAGAT+GGG 0.507362 3:+47551398 MsG0380013894.01.T01:CDS
AGTTTCTTCAAAGAAGCAAA+AGG 0.509361 3:+47557104 MsG0380013894.01.T01:CDS
TTCCAAGTCCATTTCAGCCA+TGG 0.509729 3:-47551151 None:intergenic
GACCATGGCTGAAATGGACT+TGG 0.509783 3:+47551149 MsG0380013894.01.T01:CDS
GGTTACATCGTCTTTGATGT+TGG 0.509911 3:+47551039 MsG0380013894.01.T01:CDS
CATTCACCAGAATCTTATAT+AGG 0.510974 3:-47550930 None:intergenic
GATCTCCTAGGCATTATCTT+CGG 0.511416 3:+47551018 MsG0380013894.01.T01:CDS
AGTGACTTCAAAGAAGCAAA+AGG 0.513805 3:+47553389 MsG0380013894.01.T01:CDS
TGACCACAACCATTACTCTT+CGG 0.514416 3:-47555379 None:intergenic
TGAGGTTGCTGCCAAACAAA+AGG 0.514624 3:+47553416 MsG0380013894.01.T01:CDS
TGAGGTTGCTGCCAAACAAA+AGG 0.514624 3:+47557131 MsG0380013894.01.T01:CDS
GCGTCTCTTACGACCACACC+CGG 0.518110 3:-47550895 None:intergenic
CGACATATTTAAGATTCTCG+TGG 0.520223 3:+47555243 MsG0380013894.01.T01:CDS
AGAACTATCAGCCTTCTTTG+CGG 0.521392 3:-47557584 None:intergenic
TTCACAGGAGAAACAACAAC+AGG 0.521749 3:-47552570 None:intergenic
CTTTCATGAATCTGAGGATG+TGG 0.522797 3:+47557188 MsG0380013894.01.T01:CDS
AGAACTATCAGCTTTCTTTG+CGG 0.524386 3:-47552011 None:intergenic
GATATCCTCTTATTATTGGA+AGG 0.526173 3:+47553958 MsG0380013894.01.T01:CDS
AAGCGCTGAAAAGGACTTGA+GGG 0.526550 3:+47555465 MsG0380013894.01.T01:CDS
GGTAGTCAAAATTAGTTCGC+AGG 0.532939 3:+47557161 MsG0380013894.01.T01:CDS
GATACTCAAAGTTTGGTGAA+TGG 0.534335 3:+47550970 MsG0380013894.01.T01:CDS
TCAGTGTTGGTCTTTGGGAT+GGG 0.537407 3:-47551371 None:intergenic
GTCCCGAAGACCAACTCTGA+TGG 0.538106 3:+47555732 MsG0380013894.01.T01:CDS
CGCTACTCGACTTGTGACCA+TGG 0.544412 3:+47551134 MsG0380013894.01.T01:CDS
CGAATCTTCTGGTGAAGATG+AGG 0.546781 3:+47557621 MsG0380013894.01.T01:CDS
ATGTCCGACTTCAAGAAGCC+CGG 0.547348 3:+47553913 MsG0380013894.01.T01:CDS
TGAAGAGCAATTATATTGAT+GGG 0.547887 3:+47555796 MsG0380013894.01.T01:CDS
GAGCAATTATATTGATGGGA+AGG 0.549182 3:+47555800 MsG0380013894.01.T01:CDS
AGGAGTCGCTTCTAAACTTG+TGG 0.551270 3:+47555441 MsG0380013894.01.T01:CDS
ATCAGAGTTGGTCTTCGGGA+CGG 0.551912 3:-47555730 None:intergenic
ATCATGACGAAGAAGCTCAA+GGG 0.553264 3:+47551479 MsG0380013894.01.T01:CDS
CTCCTTCTCTCCGAAAGATA+GGG 0.554373 3:-47555423 None:intergenic
AAGATATGTGTCCCCGGATG+TGG 0.555259 3:+47555198 MsG0380013894.01.T01:CDS
AAACTTTGAGTATCCACGTC+AGG 0.555864 3:-47550961 None:intergenic
AACTCAGCTGAAAGTGGCGG+AGG 0.557051 3:+47554083 MsG0380013894.01.T01:CDS
CCGTTCATTACAGACTTCAC+AGG 0.557711 3:-47552585 None:intergenic
CGTTTCTTAAGACCACATCC+GGG 0.561543 3:-47555210 None:intergenic
AGGATATGGACGCCACTCCC+GGG 0.562181 3:-47553931 None:intergenic
GGCGGAGGAGGCTTTGTCAG+GGG 0.562222 3:+47554098 MsG0380013894.01.T01:CDS
GATCGCCAAGACGCTATCCT+CGG 0.566309 3:+47555331 MsG0380013894.01.T01:CDS
GCAAGGTGCTGCTTACGTCT+CGG 0.567387 3:+47551346 MsG0380013894.01.T01:intron
TCTACAACGATGGTGTCCCC+GGG 0.568555 3:+47550877 None:intergenic
GCAAGCTGTGGAAGAAGTCG+AGG 0.568949 3:+47557080 MsG0380013894.01.T01:CDS
TGGCGGAGGAGGCTTTGTCA+GGG 0.569871 3:+47554097 MsG0380013894.01.T01:CDS
AAACTTTCAAGATCCACGTC+AGG 0.572396 3:-47555277 None:intergenic
ATCATGACGAAGAAGTTCGA+GGG 0.572521 3:+47555837 MsG0380013894.01.T01:CDS
AAAGATGGGTTATGAGGAGG+AGG 0.574952 3:+47551412 MsG0380013894.01.T01:CDS
CGAAAAGATGGGGTATGAGA+AGG 0.577206 3:+47555767 MsG0380013894.01.T01:CDS
GATGGGTTATGAGGAGGAGG+CGG 0.578268 3:+47551415 MsG0380013894.01.T01:CDS
GAAGAGTAATCCATCAGAGT+TGG 0.583113 3:-47555742 None:intergenic
GAAGAGTAATGCGTCAGTGT+TGG 0.587807 3:-47551384 None:intergenic
ATCTATGAAGTCTGGAGCGG+AGG 0.589831 3:+47555154 MsG0380013894.01.T01:intron
TACTCTTCTTCGAAAAGATG+GGG 0.590062 3:+47555757 MsG0380013894.01.T01:CDS
CATCATGACGAAGAAGTTCG+AGG 0.591689 3:+47555836 MsG0380013894.01.T01:CDS
ATGCATTATGCGGAGACTGA+AGG 0.591978 3:+47555867 MsG0380013894.01.T01:CDS
CGTAACCGAGGATAGCGTCT+TGG 0.592411 3:-47555336 None:intergenic
ATGCGTTCTGCGGAGACCAA+AGG 0.593049 3:+47551509 MsG0380013894.01.T01:CDS
GTTGCAGCGGATGATCTCCT+AGG 0.593344 3:+47551006 MsG0380013894.01.T01:CDS
TGAAGAGCAATAGTATTGAT+GGG 0.595651 3:+47551438 MsG0380013894.01.T01:CDS
GAAAGATAGGGCTAACGAAG+AGG 0.596707 3:-47551098 None:intergenic
TGTCCGACTTCAAGAAGCCC+GGG 0.597660 3:+47553914 MsG0380013894.01.T01:CDS
AAAGAAGCAAAAGGTAGATG+AGG 0.604240 3:+47553398 MsG0380013894.01.T01:CDS
AAAGAAGCAAAAGGTAGATG+AGG 0.604240 3:+47557113 MsG0380013894.01.T01:CDS
AGTAACAACTCAGCTGAAAG+TGG 0.605182 3:+47554077 MsG0380013894.01.T01:intron
CACATCCTCAGATTCATGAA+AGG 0.607833 3:-47557187 None:intergenic
AAAGATAGGGCTAACGAAGA+GGG 0.608748 3:-47551097 None:intergenic
ACTCCCGGGCTTCTTGAAGT+CGG 0.608851 3:-47553917 None:intergenic
TTATGCAAGATATGTGTCCC+CGG 0.610053 3:+47555192 MsG0380013894.01.T01:CDS
GAACCGAAGAGTAATGGTTG+TGG 0.611924 3:+47555376 MsG0380013894.01.T01:CDS
AATCATGACGAAGAAGCTCA+AGG 0.613048 3:+47551478 MsG0380013894.01.T01:CDS
GGATTATCTCTTACCTGACG+TGG 0.613896 3:+47555264 MsG0380013894.01.T01:CDS
TTGACTTTGATATAGGCAAG+AGG 0.619505 3:+47553343 MsG0380013894.01.T01:intron
TTGACTTTGATATAGGCAAG+AGG 0.619505 3:+47557058 MsG0380013894.01.T01:intron
CGAAAAGATGGGTTATGAGG+AGG 0.622267 3:+47551409 MsG0380013894.01.T01:CDS
GTCGTTGAACCGAAGAGTAA+TGG 0.627136 3:+47555370 MsG0380013894.01.T01:CDS
TCATGACGAAGAAGCTCAAG+GGG 0.629217 3:+47551480 MsG0380013894.01.T01:CDS
GGAATCCTTTCATGAATCTG+AGG 0.630260 3:+47557182 MsG0380013894.01.T01:CDS
CGTCTCTTACGACCACACCC+GGG 0.631420 3:-47550894 None:intergenic
AAAGATGGGGTATGAGAAGG+AGG 0.631960 3:+47555770 MsG0380013894.01.T01:CDS
AAAGCGCTGAAAAGGACTTG+AGG 0.634334 3:+47555464 MsG0380013894.01.T01:CDS
CCTGTGAAGTCTGTAATGAA+CGG 0.636917 3:+47552585 MsG0380013894.01.T01:CDS
TTCATCTATGAAGTCTGGAG+CGG 0.637375 3:+47555151 MsG0380013894.01.T01:intron
GGTCTGTCCTGATGAAGATG+AGG 0.638915 3:+47551831 MsG0380013894.01.T01:CDS
TGTTGAGTTTGAAACTGCAG+AGG 0.644896 3:+47553746 MsG0380013894.01.T01:CDS
TGTAACCGAAGATAATGCCT+AGG 0.649259 3:-47551023 None:intergenic
TGGTAAGATTCTTCAAGTCG+CGG 0.650501 3:+47555306 MsG0380013894.01.T01:CDS
TATAGGCAAGAGGCAAGCTG+TGG 0.650683 3:+47557068 MsG0380013894.01.T01:intron
GTCTCTTACGACCACACCCG+GGG 0.653034 3:-47550893 None:intergenic
TGTAATAACTTCACTTCACG+AGG 0.654474 3:-47551802 None:intergenic
TGAATCTTCTGATGAAGATG+AGG 0.655782 3:+47557402 MsG0380013894.01.T01:CDS
GGGGAAGCAGATGCATTATG+CGG 0.657065 3:+47555857 MsG0380013894.01.T01:CDS
TAAGCTTCTTCAAGTTGCAG+CGG 0.657667 3:+47550993 MsG0380013894.01.T01:CDS
TGAATCTTCTGATGAAGATG+AGG 0.667174 3:+47552048 MsG0380013894.01.T01:CDS
GGGGAAGCAGATGCGTTCTG+CGG 0.668612 3:+47551499 MsG0380013894.01.T01:CDS
GAGTGCACTTGAAAAGAAAG+CGG 0.670359 3:+47554967 MsG0380013894.01.T01:CDS
ATAATAAGAGGATATCCTTG+AGG 0.672467 3:-47553951 None:intergenic
AACAACTCAGCTGAAAGTGG+CGG 0.672747 3:+47554080 MsG0380013894.01.T01:CDS
GAGTGGCGTCCATATCCTCA+AGG 0.678657 3:+47553936 MsG0380013894.01.T01:CDS
TCAACATGTGCATAGCCTAG+TGG 0.679336 3:-47553729 None:intergenic
ATAGGCACTTGATAAGAATG+GGG 0.680446 3:+47553872 MsG0380013894.01.T01:intron
TATAGGCAAGAGGCAAGCTG+AGG 0.681134 3:+47553353 MsG0380013894.01.T01:intron
GAATGATGTCTTTCCTGACG+TGG 0.685326 3:+47550948 MsG0380013894.01.T01:CDS
GTTTCTTAAGACCACATCCG+GGG 0.688273 3:-47555209 None:intergenic
TCATGACGAAGAAGTTCGAG+GGG 0.691102 3:+47555838 MsG0380013894.01.T01:CDS
CATCAAAGATGACGTAACCG+AGG 0.714623 3:-47555348 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAATGATATAAAATTA+AGG - Chr3:47557468-47557487 None:intergenic 10.0%
!! AATACAATGATATAAAATTA+AGG - Chr3:47554858-47554877 None:intergenic 10.0%
!! AATACATTGATATAAAATTA+AGG - Chr3:47557236-47557255 None:intergenic 10.0%
!! ACAAAAAAGTTTAATTAAAA+AGG - Chr3:47557509-47557528 None:intergenic 10.0%
!! ACAAAAATGTTTAATTAAAA+AGG - Chr3:47551936-47551955 None:intergenic 10.0%
!! ACAAAAATGTTTAATTAAAA+CGG - Chr3:47551936-47551955 None:intergenic 10.0%
!! ATACAATGATATAAAATTAA+GGG - Chr3:47554857-47554876 None:intergenic 10.0%
!! ATACATTGATATAAAATTAA+GGG - Chr3:47557235-47557254 None:intergenic 10.0%
!! ATTACAATGATATAAAATTA+AGG - Chr3:47555079-47555098 None:intergenic 10.0%
!! CAAAAAAGTTTAATTAAAAA+GGG - Chr3:47557508-47557527 None:intergenic 10.0%
!! CAAAAATGTTTAATTAAAAA+GGG - Chr3:47551935-47551954 None:intergenic 10.0%
!! GAAAAATATTTAATTAAAAC+GGG - Chr3:47554899-47554918 None:intergenic 10.0%
!! TTACAATGATATAAAATTAA+GGG - Chr3:47555078-47555097 None:intergenic 10.0%
!!! AATTAAACATTTTTGTTTTA+TGG + Chr3:47551940-47551959 MsG0380013894.01.T01:intron 10.0%
!!! TTTTATATCATTGTATTTAA+TGG + Chr3:47554861-47554880 MsG0380013894.01.T01:intron 10.0%
!! AAAATAAACAGCTAAAAAAA+GGG - Chr3:47555930-47555949 None:intergenic 15.0%
!! AATACAATGACATAAAATTA+AGG - Chr3:47551895-47551914 None:intergenic 15.0%
!! AATATATAAAAGAATAACTG+GGG - Chr3:47554204-47554223 None:intergenic 15.0%
!! ACAATATATAAAAGAATAAC+TGG - Chr3:47554206-47554225 None:intergenic 15.0%
!! ATACAATGACATAAAATTAA+GGG - Chr3:47551894-47551913 None:intergenic 15.0%
!! ATTCATGATATATTAAAGTT+TGG + Chr3:47551745-47551764 MsG0380013894.01.T01:intron 15.0%
!! CAATATATAAAAGAATAACT+GGG - Chr3:47554205-47554224 None:intergenic 15.0%
!! TAGTTAAAATCATATATGTT+AGG + Chr3:47555584-47555603 MsG0380013894.01.T01:intron 15.0%
!! TTGTTAAAATCATATATGTT+AGG + Chr3:47551234-47551253 MsG0380013894.01.T01:intron 15.0%
!! TTGTTATCTTATAATAAGAA+AGG - Chr3:47552222-47552241 None:intergenic 15.0%
!!! AATTAAACATTTTTGTATCA+TGG + Chr3:47557282-47557301 MsG0380013894.01.T01:intron 15.0%
!!! AATTAAACTTTTTTGTTTCA+TGG + Chr3:47557513-47557532 MsG0380013894.01.T01:intron 15.0%
!!! AATTAAATATTTTTCTGTCA+TGG + Chr3:47554904-47554923 MsG0380013894.01.T01:intron 15.0%
!!! ATTTTATATCATTGATTTAC+CGG + Chr3:47557470-47557489 MsG0380013894.01.T01:intron 15.0%
!!! TATTGTTATTGTGATATATA+TGG - Chr3:47552174-47552193 None:intergenic 15.0%
!!! TTGTTTGCATTTTTAATAAT+AGG + Chr3:47553854-47553873 MsG0380013894.01.T01:intron 15.0%
!!! TTTTATATCAATGTATTTAC+TGG + Chr3:47557239-47557258 MsG0380013894.01.T01:intron 15.0%
!! AAAATTATGACAGAATCAAT+CGG - Chr3:47555512-47555531 None:intergenic 20.0%
!! AAATAAACAGCTAAAAAAAG+GGG - Chr3:47555929-47555948 None:intergenic 20.0%
!! AATATTATATTGTCTAGCTA+AGG - Chr3:47552905-47552924 None:intergenic 20.0%
!! AATTAACTTAACTCATTAGA+GGG + Chr3:47554334-47554353 MsG0380013894.01.T01:intron 20.0%
!! ATAACCCAATAAACAAAAAT+AGG - Chr3:47553322-47553341 None:intergenic 20.0%
!! ATATTATATTGTCTAGCTAA+GGG - Chr3:47552904-47552923 None:intergenic 20.0%
!! ATTAAAAAGGCTTAAATGTA+AGG - Chr3:47554049-47554068 None:intergenic 20.0%
!! GAAAATAAACAGCTAAAAAA+AGG - Chr3:47555931-47555950 None:intergenic 20.0%
!! TAACCTAACTATTAATTAGT+TGG + Chr3:47552111-47552130 MsG0380013894.01.T01:intron 20.0%
!! TAATGGAATCAATACAAATA+AGG - Chr3:47554024-47554043 None:intergenic 20.0%
!! TAATTAACTTAACTCATTAG+AGG + Chr3:47554333-47554352 MsG0380013894.01.T01:intron 20.0%
!! TATAAGAGTTCAAAGATAAA+TGG - Chr3:47553020-47553039 None:intergenic 20.0%
!! TTAAAATCATATATGTTAGG+AGG + Chr3:47551237-47551256 MsG0380013894.01.T01:intron 20.0%
!! TTACAATAACAAACAAATAC+AGG - Chr3:47553468-47553487 None:intergenic 20.0%
!! TTACTGCAACAATATTAAAA+AGG - Chr3:47554062-47554081 None:intergenic 20.0%
!! TTATATATAGAGTTGTTGAT+TGG + Chr3:47553243-47553262 MsG0380013894.01.T01:intron 20.0%
!!! AAAAGGGAATTTTAAAAAAC+CGG - Chr3:47557492-47557511 None:intergenic 20.0%
!!! ACTTGTTTTCTTTGATTTTT+TGG - Chr3:47556398-47556417 None:intergenic 20.0%
!!! ATAAATTTTTTCCAAGATTG+TGG + Chr3:47553663-47553682 MsG0380013894.01.T01:CDS 20.0%
!!! ATGTTCCTATTTTTGTTTAT+TGG + Chr3:47553314-47553333 MsG0380013894.01.T01:intron 20.0%
!!! CATTGTTCTAAAATTCAATT+TGG + Chr3:47554246-47554265 MsG0380013894.01.T01:intron 20.0%
!!! CTTGTTTTCTTTGATTTTTT+GGG - Chr3:47556397-47556416 None:intergenic 20.0%
!!! GTATGAGATTTTAGTTTTAA+AGG + Chr3:47556287-47556306 MsG0380013894.01.T01:intron 20.0%
!!! TAAATTTTTTCCAAGATTGT+GGG + Chr3:47553664-47553683 MsG0380013894.01.T01:CDS 20.0%
!!! TATTTACTGGTTTTTTAAGA+TGG + Chr3:47557252-47557271 MsG0380013894.01.T01:intron 20.0%
!!! TGAGTTTTCAACAATAAAAT+TGG - Chr3:47556975-47556994 None:intergenic 20.0%
!!! TGTGTCTTCTTTTAATTTAA+TGG + Chr3:47555635-47555654 MsG0380013894.01.T01:intron 20.0%
!!! TGTTCCTATTTTTGTTTATT+GGG + Chr3:47553315-47553334 MsG0380013894.01.T01:intron 20.0%
!!! TTGTTTTCTTTGATTTTTTG+GGG - Chr3:47556396-47556415 None:intergenic 20.0%
!!! TTTTAATTTAATGGTGTGAT+TGG + Chr3:47555644-47555663 MsG0380013894.01.T01:intron 20.0%
!!! TTTTATATCATTGTAATTGC+TGG + Chr3:47555082-47555101 MsG0380013894.01.T01:intron 20.0%
!!! TTTTATGTCATTGTATTTAC+TGG + Chr3:47551898-47551917 MsG0380013894.01.T01:intron 20.0%
!!! TTTTGAAGTTTATTGCATAT+TGG + Chr3:47557434-47557453 MsG0380013894.01.T01:intron 20.0%
! AAAATAAACAGCCAAAAAAG+TGG - Chr3:47551571-47551590 None:intergenic 25.0%
! AAATAAACAGCCAAAAAAGT+GGG - Chr3:47551570-47551589 None:intergenic 25.0%
! AAGTGAAGTTATTACATCTT+AGG + Chr3:47551809-47551828 MsG0380013894.01.T01:CDS 25.0%
! AATAAACAGCTAAAAAAAGG+GGG - Chr3:47555928-47555947 None:intergenic 25.0%
! AATCAAAGAAAACAAGTTCA+AGG + Chr3:47556401-47556420 MsG0380013894.01.T01:intron 25.0%
! AATTACCTTCCAATAATAAG+AGG - Chr3:47553966-47553985 None:intergenic 25.0%
! ACACCAACTAATTAATAGTT+AGG - Chr3:47552117-47552136 None:intergenic 25.0%
! ACCAAATTTCTTAATGATCA+AGG - Chr3:47556192-47556211 None:intergenic 25.0%
! ACCAACAAACATAAATCAAA+AGG + Chr3:47552665-47552684 MsG0380013894.01.T01:intron 25.0%
! ACCTTGATCATTAAGAAATT+TGG + Chr3:47556188-47556207 MsG0380013894.01.T01:intron 25.0%
! ACTAATCTAACTAGAGATTA+AGG + Chr3:47552444-47552463 MsG0380013894.01.T01:intron 25.0%
! AGAACATCAGAAAAAATTTC+CGG - Chr3:47557022-47557041 None:intergenic 25.0%
! AGAGAGAAAATGAAAGTAAA+AGG + Chr3:47552256-47552275 MsG0380013894.01.T01:intron 25.0%
! AGCAACATTATTACATTGAT+AGG + Chr3:47556643-47556662 MsG0380013894.01.T01:intron 25.0%
! AGTCATTCTATTTATCAGAT+AGG + Chr3:47556034-47556053 MsG0380013894.01.T01:intron 25.0%
! AGTGAAGTTATTACATCTTA+GGG + Chr3:47551810-47551829 MsG0380013894.01.T01:CDS 25.0%
! ATATCTTGCATAACGAATTT+GGG - Chr3:47555185-47555204 None:intergenic 25.0%
! ATCAAAGAAAACAAGTTCAA+GGG + Chr3:47556402-47556421 MsG0380013894.01.T01:intron 25.0%
! CATCATTCAATAAGATTCAA+TGG - Chr3:47552291-47552310 None:intergenic 25.0%
! CCAACAAACATAAATCAAAA+GGG + Chr3:47552666-47552685 MsG0380013894.01.T01:intron 25.0%
! GAAAACAATTCCAACTTTAT+TGG + Chr3:47555965-47555984 MsG0380013894.01.T01:intron 25.0%
! GAAAACAATTGCAACTTTAT+TGG + Chr3:47551606-47551625 MsG0380013894.01.T01:intron 25.0%
! GAATCAAAATTCTAATCAGA+AGG - Chr3:47554553-47554572 None:intergenic 25.0%
! TAACTAACAATAGCAATAAC+AGG - Chr3:47555566-47555585 None:intergenic 25.0%
! TAGCACATATTAATCAACTT+CGG - Chr3:47553220-47553239 None:intergenic 25.0%
! TCGGAACATCAAATAAAATT+GGG - Chr3:47553201-47553220 None:intergenic 25.0%
! TGAAGAGCAATTATATTGAT+GGG + Chr3:47555796-47555815 MsG0380013894.01.T01:CDS 25.0%
! TGTCTTCAATATCTTTATCT+TGG + Chr3:47552493-47552512 MsG0380013894.01.T01:intron 25.0%
! TTCGGAACATCAAATAAAAT+TGG - Chr3:47553202-47553221 None:intergenic 25.0%
! TTCTGATGTTCTTGTTAATT+GGG + Chr3:47557030-47557049 MsG0380013894.01.T01:intron 25.0%
! TTTCGAAGACAATATATGTT+GGG + Chr3:47553530-47553549 MsG0380013894.01.T01:intron 25.0%
! TTTCTGATGTTCTTGTTAAT+TGG + Chr3:47557029-47557048 MsG0380013894.01.T01:intron 25.0%
! TTTGAATTGATCAAATTCTC+CGG - Chr3:47556901-47556920 None:intergenic 25.0%
!! AAATCAGACAAGCTTTTATT+TGG + Chr3:47556496-47556515 MsG0380013894.01.T01:intron 25.0%
!! AAGTTGATTAATATGTGCTA+TGG + Chr3:47553220-47553239 MsG0380013894.01.T01:intron 25.0%
!! ATATGTAATTGTCACTTCTA+TGG + Chr3:47552194-47552213 MsG0380013894.01.T01:intron 25.0%
!! TAACTTCAATACCTTTTGTT+TGG - Chr3:47553430-47553449 None:intergenic 25.0%
!! TATTTCGACTATAATGCTTT+TGG + Chr3:47552524-47552543 MsG0380013894.01.T01:intron 25.0%
!! TGATTCTGTCATAATTTTGT+TGG + Chr3:47555514-47555533 MsG0380013894.01.T01:intron 25.0%
!! TTAGAGACTTTGAAGATAAA+TGG - Chr3:47552966-47552985 None:intergenic 25.0%
!!! AAGCTGTTACTTCTAAAATA+AGG + Chr3:47551981-47552000 MsG0380013894.01.T01:CDS 25.0%
!!! AAGCTGTTTCTTCTAAAATA+GGG + Chr3:47554945-47554964 MsG0380013894.01.T01:CDS 25.0%
!!! ATTTTAGAACAATGTTTCTG+AGG - Chr3:47554240-47554259 None:intergenic 25.0%
!!! GGTTATTTTGACTTTGATAT+AGG + Chr3:47553336-47553355 MsG0380013894.01.T01:intron 25.0%
!!! TACTTAGTTTCAAAGCATTT+TGG + Chr3:47556530-47556549 MsG0380013894.01.T01:intron 25.0%
!!! TTAGGTTACAACTATTTCTA+TGG - Chr3:47552099-47552118 None:intergenic 25.0%
AAAGTTGTTCCATCCAAAAA+TGG + Chr3:47557322-47557341 MsG0380013894.01.T01:CDS 30.0%
AAATCAAAGCAGAACAGTAA+AGG - Chr3:47552616-47552635 None:intergenic 30.0%
AACCATCACTCTAACAAATT+AGG + Chr3:47552380-47552399 MsG0380013894.01.T01:intron 30.0%
AAGTTGTTCCATCCAAAAAT+GGG + Chr3:47557323-47557342 MsG0380013894.01.T01:CDS 30.0%
AATAGGCACTTGATAAGAAT+GGG + Chr3:47553871-47553890 MsG0380013894.01.T01:intron 30.0%
AATCCAAGTAAAACGTGAAA+AGG + Chr3:47556313-47556332 MsG0380013894.01.T01:intron 30.0%
ACAAATCATACAACCATTAG+AGG - Chr3:47555131-47555150 None:intergenic 30.0%
AGAATCTTATATAGGTCAAC+AGG - Chr3:47550925-47550944 None:intergenic 30.0%
AGACTAAGAAGAATGCTTTA+AGG - Chr3:47552748-47552767 None:intergenic 30.0%
AGTTTCTTCAAAGAAGCAAA+AGG + Chr3:47557104-47557123 MsG0380013894.01.T01:CDS 30.0%
ATAATAAGAGGATATCCTTG+AGG - Chr3:47553954-47553973 None:intergenic 30.0%
ATCAAACTAGCCAATAAAGT+TGG - Chr3:47555978-47555997 None:intergenic 30.0%
ATCATTAAGAAATTTGGTCG+AGG + Chr3:47556194-47556213 MsG0380013894.01.T01:intron 30.0%
ATTACTCTTCTTCGAAAAGA+TGG + Chr3:47551397-47551416 MsG0380013894.01.T01:CDS 30.0%
CAACAATAAAATTGGAGAAG+TGG - Chr3:47556967-47556986 None:intergenic 30.0%
CAAGGATATCCTCTTATTAT+TGG + Chr3:47553954-47553973 MsG0380013894.01.T01:CDS 30.0%
CATATCTTGCATAACGAATT+TGG - Chr3:47555186-47555205 None:intergenic 30.0%
CATTCACCAGAATCTTATAT+AGG - Chr3:47550933-47550952 None:intergenic 30.0%
CGAAACTGTAAACTAGAAAA+CGG + Chr3:47556668-47556687 MsG0380013894.01.T01:intron 30.0%
CGGAACATCAAATAAAATTG+GGG - Chr3:47553200-47553219 None:intergenic 30.0%
CTTTCGAAGACAATATATGT+TGG + Chr3:47553529-47553548 MsG0380013894.01.T01:intron 30.0%
GAAACTGTAAACTAGAAAAC+GGG + Chr3:47556669-47556688 MsG0380013894.01.T01:intron 30.0%
GACTAAGAAGAATGCTTTAA+GGG - Chr3:47552747-47552766 None:intergenic 30.0%
GATATCCTCTTATTATTGGA+AGG + Chr3:47553958-47553977 MsG0380013894.01.T01:CDS 30.0%
GGAACATCAAATAAAATTGG+GGG - Chr3:47553199-47553218 None:intergenic 30.0%
GGCAAAGAGAATTTAAGAAT+TGG + Chr3:47554655-47554674 MsG0380013894.01.T01:intron 30.0%
GGCTTAAATGTAAGGAATAA+TGG - Chr3:47554041-47554060 None:intergenic 30.0%
GTGAAGAGCAATTATATTGA+TGG + Chr3:47555795-47555814 MsG0380013894.01.T01:CDS 30.0%
TAAAGATCGTCTTTCTTTAC+AGG - Chr3:47557355-47557374 None:intergenic 30.0%
TAACCACATGACAATTCAAT+AGG + Chr3:47556364-47556383 MsG0380013894.01.T01:intron 30.0%
TAATAGGCACTTGATAAGAA+TGG + Chr3:47553870-47553889 MsG0380013894.01.T01:intron 30.0%
TATCAGATTCAGGAAGATAT+AGG - Chr3:47554747-47554766 None:intergenic 30.0%
TCAAAGAAAACAAGTTCAAG+GGG + Chr3:47556403-47556422 MsG0380013894.01.T01:intron 30.0%
TCAAATCATACAACCATTAG+AGG - Chr3:47552149-47552168 None:intergenic 30.0%
TCATTAAGAAATTTGGTCGA+GGG + Chr3:47556195-47556214 MsG0380013894.01.T01:intron 30.0%
TGAATAATGATGTGAGTGAA+AGG + Chr3:47551694-47551713 MsG0380013894.01.T01:intron 30.0%
TGTTGACCTATATAAGATTC+TGG + Chr3:47550924-47550943 MsG0380013894.01.T01:CDS 30.0%
TTACTCTTCTTCGAAAAGAT+GGG + Chr3:47551398-47551417 MsG0380013894.01.T01:CDS 30.0%
TTAGGTAGAAGTTTGACATT+TGG + Chr3:47554781-47554800 MsG0380013894.01.T01:intron 30.0%
TTGGTTATGGTAAGAGAAAA+AGG + Chr3:47553706-47553725 MsG0380013894.01.T01:CDS 30.0%
TTTGACATTTGGAAATCCAT+AGG + Chr3:47554792-47554811 MsG0380013894.01.T01:intron 30.0%
TTTGTTTCATCTATGAAGTC+TGG + Chr3:47555146-47555165 MsG0380013894.01.T01:intron 30.0%
! AGAAAAGTTTTCTATAGTCG+AGG + Chr3:47556010-47556029 MsG0380013894.01.T01:intron 30.0%
! AGGATATAAAGATTTTGTCG+TGG - Chr3:47556932-47556951 None:intergenic 30.0%
! GCTAAAATGCTTGTCTTTTT+GGG - Chr3:47556081-47556100 None:intergenic 30.0%
! GTGATGTTTAAAGCTTGTAT+AGG - Chr3:47552795-47552814 None:intergenic 30.0%
! TACCTTCAATACCTTTTGTT+TGG - Chr3:47557145-47557164 None:intergenic 30.0%
! TAGTTTGTCGTCATCAAAAA+GGG - Chr3:47554285-47554304 None:intergenic 30.0%
! TGCTAAAATGCTTGTCTTTT+TGG - Chr3:47556082-47556101 None:intergenic 30.0%
! TTGGTGCTTATTACATCTTA+GGG + Chr3:47551764-47551783 MsG0380013894.01.T01:intron 30.0%
!! AGATAAATGGTAGTTCTAAG+AGG - Chr3:47552953-47552972 None:intergenic 30.0%
!! ATTTTAGTGTCGAGACATTT+AGG - Chr3:47552865-47552884 None:intergenic 30.0%
!! CTGTCATAATTTTGTTGGTT+TGG + Chr3:47555519-47555538 MsG0380013894.01.T01:intron 30.0%
!! GAAGCTGTTTCTTCTAAAAT+AGG + Chr3:47554944-47554963 MsG0380013894.01.T01:CDS 30.0%
!! GATTAGTTTATGAATGCTAG+AGG - Chr3:47552723-47552742 None:intergenic 30.0%
!! GATTGGTCGAATTGATTTTA+TGG + Chr3:47553260-47553279 MsG0380013894.01.T01:intron 30.0%
!! TCATTTTGTTTCATCTAGTG+AGG + Chr3:47554994-47555013 MsG0380013894.01.T01:intron 30.0%
!! TGAAGAGCAATAGTATTGAT+GGG + Chr3:47551438-47551457 MsG0380013894.01.T01:CDS 30.0%
!! TGATAGTTCTGATGAAGAAT+CGG + Chr3:47552024-47552043 MsG0380013894.01.T01:CDS 30.0%
!! TGATTCTGAAGTTCTTCTTA+GGG + Chr3:47554567-47554586 MsG0380013894.01.T01:intron 30.0%
!! TGGAAAAGGTTTTGTATGTT+TGG + Chr3:47551169-47551188 MsG0380013894.01.T01:intron 30.0%
!! TTAGTTTGTCGTCATCAAAA+AGG - Chr3:47554286-47554305 None:intergenic 30.0%
!! TTGATTCTGAAGTTCTTCTT+AGG + Chr3:47554566-47554585 MsG0380013894.01.T01:intron 30.0%
!! TTTGGTGCTTATTACATCTT+AGG + Chr3:47551763-47551782 MsG0380013894.01.T01:intron 30.0%
!!! AATGCTTTTGGTTTGTTTGT+AGG + Chr3:47552536-47552555 MsG0380013894.01.T01:intron 30.0%
!!! CCCTTTTGATTTATGTTTGT+TGG - Chr3:47552669-47552688 None:intergenic 30.0%
!!! CTTGGTTGGTTTTAATTGAT+CGG + Chr3:47553091-47553110 MsG0380013894.01.T01:intron 30.0%
AAAGAAGCAAAAGGTAGATG+AGG + Chr3:47553398-47553417 MsG0380013894.01.T01:CDS 35.0%
AAAGATAGGGTTAACGAAGA+TGG - Chr3:47555413-47555432 None:intergenic 35.0%
ACTTAACCGCCTTAGATTTA+GGG - Chr3:47554377-47554396 None:intergenic 35.0%
AGAACTATCAGCTTTCTTTG+CGG - Chr3:47552014-47552033 None:intergenic 35.0%
AGTGACTTCAAAGAAGCAAA+AGG + Chr3:47553389-47553408 MsG0380013894.01.T01:CDS 35.0%
ATAGGCACTTGATAAGAATG+GGG + Chr3:47553872-47553891 MsG0380013894.01.T01:intron 35.0%
ATGGTTGTTGATGTATGTCT+TGG + Chr3:47553687-47553706 MsG0380013894.01.T01:CDS 35.0%
ATTAAAGTTGCCCAATCTGA+TGG - Chr3:47556234-47556253 None:intergenic 35.0%
ATTTCTATGGCTGCTATGAA+AGG - Chr3:47552086-47552105 None:intergenic 35.0%
CAAAGATAAATGGCAAGAGA+TGG - Chr3:47553010-47553029 None:intergenic 35.0%
CTTAGCACACTAATAGTTGT+TGG - Chr3:47552473-47552492 None:intergenic 35.0%
GAAGTTGTTCCTTCCAAAAT+AGG + Chr3:47557553-47557572 MsG0380013894.01.T01:CDS 35.0%
GAGCAATTATATTGATGGGA+AGG + Chr3:47555800-47555819 MsG0380013894.01.T01:CDS 35.0%
GATCTTGAAAGTTTGGAGAA+TGG + Chr3:47555286-47555305 MsG0380013894.01.T01:CDS 35.0%
GATTGCCATATGCTATACAA+AGG + Chr3:47556584-47556603 MsG0380013894.01.T01:intron 35.0%
GATTGGTGTAGTCTGTAATA+TGG + Chr3:47555661-47555680 MsG0380013894.01.T01:intron 35.0%
GCAGTTAAATTCAGATTCTG+TGG + Chr3:47554475-47554494 MsG0380013894.01.T01:intron 35.0%
GGAAATGTATTCGTACATGT+TGG - Chr3:47552774-47552793 None:intergenic 35.0%
GTCAAACTTCTACCTAATCA+GGG - Chr3:47554778-47554797 None:intergenic 35.0%
GTCATCAAAGTAATTACAGC+TGG + Chr3:47552414-47552433 MsG0380013894.01.T01:intron 35.0%
GTGAACAAGAGTTGTTTGTA+GGG + Chr3:47556606-47556625 MsG0380013894.01.T01:intron 35.0%
GTTCACCTTTGTATAGCATA+TGG - Chr3:47556592-47556611 None:intergenic 35.0%
GTTGATGTATGTCTTGGTTA+TGG + Chr3:47553693-47553712 MsG0380013894.01.T01:CDS 35.0%
TAAGAATGGGGAAAAACTGT+TGG + Chr3:47553884-47553903 MsG0380013894.01.T01:CDS 35.0%
TACTCTTCTTCGAAAAGATG+GGG + Chr3:47551399-47551418 MsG0380013894.01.T01:CDS 35.0%
TACTTAACCGCCTTAGATTT+AGG - Chr3:47554378-47554397 None:intergenic 35.0%
TATCTTCCTGAATCTGATAG+AGG + Chr3:47554748-47554767 MsG0380013894.01.T01:intron 35.0%
TCAAACTTCTACCTAATCAG+GGG - Chr3:47554777-47554796 None:intergenic 35.0%
TCTAATACCTCATCTTCATC+AGG - Chr3:47551841-47551860 None:intergenic 35.0%
TCTTCGTTAACCCTATCTTT+CGG + Chr3:47555413-47555432 MsG0380013894.01.T01:CDS 35.0%
TGAATCTTCTGATGAAGATG+AGG + Chr3:47552048-47552067 MsG0380013894.01.T01:CDS 35.0%
TGTAATAACTTCACTTCACG+AGG - Chr3:47551805-47551824 None:intergenic 35.0%
TGTCAAACTTCTACCTAATC+AGG - Chr3:47554779-47554798 None:intergenic 35.0%
TTCAGGAAGATATAGGAGAT+TGG - Chr3:47554740-47554759 None:intergenic 35.0%
TTGACTTTGATATAGGCAAG+AGG + Chr3:47553343-47553362 MsG0380013894.01.T01:intron 35.0%
TTTCTCACTCATGTGATTCT+TGG + Chr3:47553594-47553613 MsG0380013894.01.T01:intron 35.0%
! ACAAGCGTGTCTTCTTTTAA+TGG + Chr3:47551277-47551296 MsG0380013894.01.T01:intron 35.0%
! ATGAAGCATTCATGTGTTCT+TGG + Chr3:47554634-47554653 MsG0380013894.01.T01:intron 35.0%
! ATGCCTTTTCACGTTTTACT+TGG - Chr3:47556319-47556338 None:intergenic 35.0%
! ATGGAACAACTTTTGTTGCA+GGG - Chr3:47557315-47557334 None:intergenic 35.0%
! CAGTTTTTATACACTGAGCT+TGG + Chr3:47553073-47553092 MsG0380013894.01.T01:intron 35.0%
! CATTTCCTTTGTAGTTTGTG+TGG - Chr3:47554685-47554704 None:intergenic 35.0%
! CGACATATTTAAGATTCTCG+TGG + Chr3:47555243-47555262 MsG0380013894.01.T01:CDS 35.0%
! GACATTTAGGATGAGAGAAA+AGG - Chr3:47552852-47552871 None:intergenic 35.0%
! GATACTCAAAGTTTGGTGAA+TGG + Chr3:47550970-47550989 MsG0380013894.01.T01:CDS 35.0%
! GGTTGGTGTAGTCTTTAATA+TGG + Chr3:47551303-47551322 MsG0380013894.01.T01:intron 35.0%
! GTGAAGAGCAATAGTATTGA+TGG + Chr3:47551437-47551456 MsG0380013894.01.T01:CDS 35.0%
! GTGTTTTGTGATACCTCTAA+TGG + Chr3:47552133-47552152 MsG0380013894.01.T01:intron 35.0%
! TAAAGATTTTGTCGTGGAGA+TGG - Chr3:47556926-47556945 None:intergenic 35.0%
! TCATCTTCTGAAGAATCTTC+TGG + Chr3:47557379-47557398 MsG0380013894.01.T01:CDS 35.0%
! TCGACATCTTTTCAACTTTG+TGG + Chr3:47553788-47553807 MsG0380013894.01.T01:intron 35.0%
! TTTTATACACTGAGCTTGGT+TGG + Chr3:47553077-47553096 MsG0380013894.01.T01:intron 35.0%
!! AAATCCATAGGAGTATCAAC+TGG + Chr3:47554804-47554823 MsG0380013894.01.T01:intron 35.0%
!! CTCCTAATTTGTTAGAGTGA+TGG - Chr3:47552385-47552404 None:intergenic 35.0%
!! GATTCTGAAGTTCTTCTTAG+GGG + Chr3:47554568-47554587 MsG0380013894.01.T01:intron 35.0%
!! TGCCAAACAAAAGGTATTGA+AGG + Chr3:47553425-47553444 MsG0380013894.01.T01:intron 35.0%
!! TGTTTGTTGTTTGCTTAGAG+AGG - Chr3:47556816-47556835 None:intergenic 35.0%
!! TTTTGGTAAGAGTAATGGAG+AGG + Chr3:47554121-47554140 MsG0380013894.01.T01:CDS 35.0%
!!! TTTTGGAGTACGTCATAATG+AGG + Chr3:47556547-47556566 MsG0380013894.01.T01:intron 35.0%
!!! TTTTTTCCAAGATTGTGGGA+TGG + Chr3:47553668-47553687 MsG0380013894.01.T01:CDS 35.0%
AAACTTTCAAGATCCACGTC+AGG - Chr3:47555280-47555299 None:intergenic 40.0%
AAACTTTGAGTATCCACGTC+AGG - Chr3:47550964-47550983 None:intergenic 40.0%
AAAGATAGGGCTAACGAAGA+GGG - Chr3:47551100-47551119 None:intergenic 40.0%
AAGAAACAGCTTCTGCTTCA+GGG - Chr3:47554937-47554956 None:intergenic 40.0%
AATCATGACGAAGAAGCTCA+AGG + Chr3:47551478-47551497 MsG0380013894.01.T01:CDS 40.0%
ACAATTCACCACCATCAGAT+TGG + Chr3:47556220-47556239 MsG0380013894.01.T01:intron 40.0%
ACAGTAGTAGAGTCAGATGA+GGG + Chr3:47556436-47556455 MsG0380013894.01.T01:intron 40.0%
AGAACTATCAGCCTTCTTTG+CGG - Chr3:47557587-47557606 None:intergenic 40.0%
AGAGGATATCCTTGAGGATA+TGG - Chr3:47553948-47553967 None:intergenic 40.0%
AGCCAAAAAAGTGGGCAAAT+CGG - Chr3:47551562-47551581 None:intergenic 40.0%
AGTAACAACTCAGCTGAAAG+TGG + Chr3:47554077-47554096 MsG0380013894.01.T01:intron 40.0%
ATCATGACGAAGAAGCTCAA+GGG + Chr3:47551479-47551498 MsG0380013894.01.T01:CDS 40.0%
ATCATGACGAAGAAGTTCGA+GGG + Chr3:47555837-47555856 MsG0380013894.01.T01:CDS 40.0%
ATCATTGTGCATGAGCTGAA+AGG - Chr3:47554167-47554186 None:intergenic 40.0%
CAAACTTCTACCTAATCAGG+GGG - Chr3:47554776-47554795 None:intergenic 40.0%
CAAGAATCTGACGAATCTTC+TGG + Chr3:47557610-47557629 MsG0380013894.01.T01:CDS 40.0%
CAATTCACCACCATCAGATT+GGG + Chr3:47556221-47556240 MsG0380013894.01.T01:intron 40.0%
CACATCCTCAGATTCATGAA+AGG - Chr3:47557190-47557209 None:intergenic 40.0%
CAGAAGATTCGTCAGATTCT+TGG - Chr3:47557612-47557631 None:intergenic 40.0%
CATAGGCACATTGTTGAAAC+TGG - Chr3:47556123-47556142 None:intergenic 40.0%
CATGACAATTCAATAGGTGC+AGG + Chr3:47556370-47556389 MsG0380013894.01.T01:intron 40.0%
CATTCATAGAACAGACAAGC+CGG + Chr3:47556879-47556898 MsG0380013894.01.T01:intron 40.0%
CCATCTAGTGATACCTCTAA+TGG + Chr3:47555115-47555134 MsG0380013894.01.T01:intron 40.0%
CCTCACACACATCATAAAAG+TGG - Chr3:47556162-47556181 None:intergenic 40.0%
CCTGTGAAGTCTGTAATGAA+CGG + Chr3:47552585-47552604 MsG0380013894.01.T01:CDS 40.0%
CTGTTACTGTGTTAGTAGCA+AGG + Chr3:47555687-47555706 MsG0380013894.01.T01:intron 40.0%
CTGTTACTGTGTTTGTAGCA+AGG + Chr3:47551329-47551348 MsG0380013894.01.T01:intron 40.0%
CTTAACCGCCTTAGATTTAG+GGG - Chr3:47554376-47554395 None:intergenic 40.0%
CTTGCTACTAACACAGTAAC+AGG - Chr3:47555689-47555708 None:intergenic 40.0%
CTTTCATGAATCTGAGGATG+TGG + Chr3:47557188-47557207 MsG0380013894.01.T01:CDS 40.0%
GAACTGAAGCGTACTAGTTA+CGG + Chr3:47551063-47551082 MsG0380013894.01.T01:CDS 40.0%
GAAGAGTAATCCATCAGAGT+TGG - Chr3:47555745-47555764 None:intergenic 40.0%
GACCAGTTGAAAGAATGCAT+AGG - Chr3:47556140-47556159 None:intergenic 40.0%
GAGACCAAAGGTAATGCAAA+AGG + Chr3:47551521-47551540 MsG0380013894.01.T01:intron 40.0%
GAGACTGAAGGTAATGCAAA+AGG + Chr3:47555879-47555898 MsG0380013894.01.T01:intron 40.0%
GAGTGCACTTGAAAAGAAAG+CGG + Chr3:47554967-47554986 MsG0380013894.01.T01:CDS 40.0%
GATCTCCTAGGCATTATCTT+CGG + Chr3:47551018-47551037 MsG0380013894.01.T01:CDS 40.0%
GCACCTATTGAATTGTCATG+TGG - Chr3:47556370-47556389 None:intergenic 40.0%
GCTTACCACACAAACTACAA+AGG + Chr3:47554677-47554696 MsG0380013894.01.T01:intron 40.0%
GGAAGATATAGGAGATTGGT+TGG - Chr3:47554736-47554755 None:intergenic 40.0%
GGAATCCTTTCATGAATCTG+AGG + Chr3:47557182-47557201 MsG0380013894.01.T01:CDS 40.0%
GGAATCTTCTGATGAAGATG+AGG + Chr3:47555015-47555034 MsG0380013894.01.T01:intron 40.0%
GGTAGTCAAAATTAGTTCGC+AGG + Chr3:47557161-47557180 MsG0380013894.01.T01:CDS 40.0%
GGTGAACAAGAGTTGTTTGT+AGG + Chr3:47556605-47556624 MsG0380013894.01.T01:intron 40.0%
GGTTACATCGTCTTTGATGT+TGG + Chr3:47551039-47551058 MsG0380013894.01.T01:CDS 40.0%
GTCTGTTCTATGAATGGCAT+TGG - Chr3:47556875-47556894 None:intergenic 40.0%
GTTGTCTTGGTTAAACCCAT+AGG - Chr3:47556465-47556484 None:intergenic 40.0%
TCATTGTGCATGAGCTGAAA+GGG - Chr3:47554166-47554185 None:intergenic 40.0%
TCTTCGTTAGCCCTATCTTT+CGG + Chr3:47551100-47551119 MsG0380013894.01.T01:CDS 40.0%
TGAAAAGGACTTGAGGGATA+AGG + Chr3:47555471-47555490 MsG0380013894.01.T01:CDS 40.0%
TGACCACAACCATTACTCTT+CGG - Chr3:47555382-47555401 None:intergenic 40.0%
TGACGTGGATACTCAAAGTT+TGG + Chr3:47550963-47550982 MsG0380013894.01.T01:CDS 40.0%
TGACGTGGATCTTGAAAGTT+TGG + Chr3:47555279-47555298 MsG0380013894.01.T01:CDS 40.0%
TGCCTATGCATTCTTTCAAC+TGG + Chr3:47556135-47556154 MsG0380013894.01.T01:intron 40.0%
TGGTAAGATTCTTCAAGTCG+CGG + Chr3:47555306-47555325 MsG0380013894.01.T01:CDS 40.0%
TGTAACCGAAGATAATGCCT+AGG - Chr3:47551026-47551045 None:intergenic 40.0%
TGTATAGCATATGGCAATCG+TGG - Chr3:47556583-47556602 None:intergenic 40.0%
TGTTGGGAACTTATCCTTCA+AGG + Chr3:47553546-47553565 MsG0380013894.01.T01:CDS 40.0%
TTAACCGCCTTAGATTTAGG+GGG - Chr3:47554375-47554394 None:intergenic 40.0%
TTATGCAAGATATGTGTCCC+CGG + Chr3:47555192-47555211 MsG0380013894.01.T01:CDS 40.0%
TTCACAGGAGAAACAACAAC+AGG - Chr3:47552573-47552592 None:intergenic 40.0%
TTCATCTATGAAGTCTGGAG+CGG + Chr3:47555151-47555170 MsG0380013894.01.T01:intron 40.0%
TTTCGCTCTTCATGTTGTCT+TGG - Chr3:47556478-47556497 None:intergenic 40.0%
! AGTGCCTTTTGCATTACCTT+TGG - Chr3:47551528-47551547 None:intergenic 40.0%
! GATGGAACAACTTTTGTTGC+AGG - Chr3:47557316-47557335 None:intergenic 40.0%
! GTCCTTTTCTCCGAAAGATA+GGG - Chr3:47551113-47551132 None:intergenic 40.0%
! TAAGAGTAATGGAGAGGATG+AGG + Chr3:47554127-47554146 MsG0380013894.01.T01:CDS 40.0%
! TGAATGGCATTGGAATCCAA+AGG - Chr3:47556865-47556884 None:intergenic 40.0%
! TGTCCTTTTCTCCGAAAGAT+AGG - Chr3:47551114-47551133 None:intergenic 40.0%
! TGTTGAGTTTGAAACTGCAG+AGG + Chr3:47553746-47553765 MsG0380013894.01.T01:CDS 40.0%
!! AAGACAAGCATTTTAGCACG+AGG + Chr3:47556084-47556103 MsG0380013894.01.T01:intron 40.0%
!! AATCCATCAGAGTTGGTCTT+CGG - Chr3:47555738-47555757 None:intergenic 40.0%
!! AGGGGTTTTGGTAAGAGTAA+TGG + Chr3:47554116-47554135 MsG0380013894.01.T01:CDS 40.0%
!! CCACTTTTATGATGTGTGTG+AGG + Chr3:47556159-47556178 MsG0380013894.01.T01:intron 40.0%
!! CCATTAGAGGTATCACTAGA+TGG - Chr3:47555118-47555137 None:intergenic 40.0%
!! CTTCGAAAAGATGGGTTATG+AGG + Chr3:47551406-47551425 MsG0380013894.01.T01:CDS 40.0%
!! TAAGCTTCTTCAAGTTGCAG+CGG + Chr3:47550993-47551012 MsG0380013894.01.T01:CDS 40.0%
!!! TTTTGTTTTGCTGCTGCAGA+GGG - Chr3:47556724-47556743 None:intergenic 40.0%
AAAGATGGGGTATGAGAAGG+AGG + Chr3:47555770-47555789 MsG0380013894.01.T01:CDS 45.0%
AAAGTTGCCCAATCTGATGG+TGG - Chr3:47556231-47556250 None:intergenic 45.0%
AACAACTCAGCTGAAAGTGG+CGG + Chr3:47554080-47554099 MsG0380013894.01.T01:CDS 45.0%
AACCCTATCTTTCGGAGAGA+AGG + Chr3:47555421-47555440 MsG0380013894.01.T01:CDS 45.0%
ACTCCTTCTCTCCGAAAGAT+AGG - Chr3:47555427-47555446 None:intergenic 45.0%
ACTTGTGACCATGGCTGAAA+TGG + Chr3:47551143-47551162 MsG0380013894.01.T01:CDS 45.0%
AGCCCTATCTTTCGGAGAAA+AGG + Chr3:47551108-47551127 MsG0380013894.01.T01:CDS 45.0%
AGGAGTCGCTTCTAAACTTG+TGG + Chr3:47555441-47555460 MsG0380013894.01.T01:CDS 45.0%
AGTCAGATGAGGGTAACCTA+TGG + Chr3:47556446-47556465 MsG0380013894.01.T01:intron 45.0%
ATGCATTATGCGGAGACTGA+AGG + Chr3:47555867-47555886 MsG0380013894.01.T01:CDS 45.0%
CAACAACCATCCCACAATCT+TGG - Chr3:47553677-47553696 None:intergenic 45.0%
CATCAAAGATGACGTAACCG+AGG - Chr3:47555351-47555370 None:intergenic 45.0%
CATCATGACGAAGAAGTTCG+AGG + Chr3:47555836-47555855 MsG0380013894.01.T01:CDS 45.0%
CATTGTGCATGAGCTGAAAG+GGG - Chr3:47554165-47554184 None:intergenic 45.0%
CCGTTCATTACAGACTTCAC+AGG - Chr3:47552588-47552607 None:intergenic 45.0%
CGAAAAGATGGGGTATGAGA+AGG + Chr3:47555767-47555786 MsG0380013894.01.T01:CDS 45.0%
CGAATCTTCTGGTGAAGATG+AGG + Chr3:47557621-47557640 MsG0380013894.01.T01:CDS 45.0%
CGGCTTGTCTGTTCTATGAA+TGG - Chr3:47556881-47556900 None:intergenic 45.0%
CGTTTCTTAAGACCACATCC+GGG - Chr3:47555213-47555232 None:intergenic 45.0%
CTCCTTCTCTCCGAAAGATA+GGG - Chr3:47555426-47555445 None:intergenic 45.0%
GAAAGATAGGGCTAACGAAG+AGG - Chr3:47551101-47551120 None:intergenic 45.0%
GAACCGAAGAGTAATGGTTG+TGG + Chr3:47555376-47555395 MsG0380013894.01.T01:CDS 45.0%
GAACTATCAGCCTTCTTTGC+GGG - Chr3:47557586-47557605 None:intergenic 45.0%
GAAGAAACAGCTTCTGCTTC+AGG - Chr3:47554938-47554957 None:intergenic 45.0%
GAAGAGTAATGCGTCAGTGT+TGG - Chr3:47551387-47551406 None:intergenic 45.0%
GAATGATGTCTTTCCTGACG+TGG + Chr3:47550948-47550967 MsG0380013894.01.T01:CDS 45.0%
GACAGTAGTAGAGTCAGATG+AGG + Chr3:47556435-47556454 MsG0380013894.01.T01:intron 45.0%
GCGTTTCTTAAGACCACATC+CGG - Chr3:47555214-47555233 None:intergenic 45.0%
GGATTATCTCTTACCTGACG+TGG + Chr3:47555264-47555283 MsG0380013894.01.T01:CDS 45.0%
GGCACATTGTTGAAACTGGT+TGG - Chr3:47556119-47556138 None:intergenic 45.0%
GGTAAGAGAAAAAGGCCACT+AGG + Chr3:47553714-47553733 MsG0380013894.01.T01:CDS 45.0%
GTCAGATGAGGGTAACCTAT+GGG + Chr3:47556447-47556466 MsG0380013894.01.T01:intron 45.0%
GTCGTTGAACCGAAGAGTAA+TGG + Chr3:47555370-47555389 MsG0380013894.01.T01:CDS 45.0%
GTTTCTTAAGACCACATCCG+GGG - Chr3:47555212-47555231 None:intergenic 45.0%
TAGAAAACGGGCACTATGAC+AGG + Chr3:47556681-47556700 MsG0380013894.01.T01:intron 45.0%
TCAACATGTGCATAGCCTAG+TGG - Chr3:47553732-47553751 None:intergenic 45.0%
TCATGACGAAGAAGCTCAAG+GGG + Chr3:47551480-47551499 MsG0380013894.01.T01:CDS 45.0%
TCATGACGAAGAAGTTCGAG+GGG + Chr3:47555838-47555857 MsG0380013894.01.T01:CDS 45.0%
TCCTAGCTCGATTCAAAAGC+CGG + Chr3:47557000-47557019 MsG0380013894.01.T01:intron 45.0%
TGAGGTTGCTGCCAAACAAA+AGG + Chr3:47553416-47553435 MsG0380013894.01.T01:CDS 45.0%
TTCCAAGTCCATTTCAGCCA+TGG - Chr3:47551154-47551173 None:intergenic 45.0%
TTGTTTGCTTAGAGAGGCTG+AGG - Chr3:47556810-47556829 None:intergenic 45.0%
! CAAGCCAGTTGATACTCCTA+TGG - Chr3:47554811-47554830 None:intergenic 45.0%
! CGTGTCTTCTTTTAATGGCG+CGG + Chr3:47551282-47551301 MsG0380013894.01.T01:intron 45.0%
! GGCTGAAATGGACTTGGAAA+AGG + Chr3:47551155-47551174 MsG0380013894.01.T01:CDS 45.0%
! TACAGGTGCACTCCCATTTT+TGG - Chr3:47557338-47557357 None:intergenic 45.0%
! TCTTCTTTTAATGGCGCGGT+TGG + Chr3:47551286-47551305 MsG0380013894.01.T01:intron 45.0%
! TGGCATTGGAATCCAAAGGA+AGG - Chr3:47556861-47556880 None:intergenic 45.0%
!! AAAGATGGGTTATGAGGAGG+AGG + Chr3:47551412-47551431 MsG0380013894.01.T01:CDS 45.0%
!! AAAGCGCTGAAAAGGACTTG+AGG + Chr3:47555464-47555483 MsG0380013894.01.T01:CDS 45.0%
!! AAGCGCTGAAAAGGACTTGA+GGG + Chr3:47555465-47555484 MsG0380013894.01.T01:CDS 45.0%
!! AATGCGTCAGTGTTGGTCTT+TGG - Chr3:47551380-47551399 None:intergenic 45.0%
!! ACTTGTGGAAAGCGCTGAAA+AGG + Chr3:47555456-47555475 MsG0380013894.01.T01:CDS 45.0%
!! ATCCATCAGAGTTGGTCTTC+GGG - Chr3:47555737-47555756 None:intergenic 45.0%
!! ATGCGTCAGTGTTGGTCTTT+GGG - Chr3:47551379-47551398 None:intergenic 45.0%
!! CATTTTAGCACGAGGAAGCA+AGG + Chr3:47556092-47556111 MsG0380013894.01.T01:intron 45.0%
!! CGAAAAGATGGGTTATGAGG+AGG + Chr3:47551409-47551428 MsG0380013894.01.T01:CDS 45.0%
!! GGTGCACTTCCTATTTTGGA+AGG - Chr3:47557565-47557584 None:intergenic 45.0%
!! TCAGTGTTGGTCTTTGGGAT+GGG - Chr3:47551374-47551393 None:intergenic 45.0%
!!! GACCGATTTGCCCACTTTTT+TGG + Chr3:47551557-47551576 MsG0380013894.01.T01:intron 45.0%
!!! GTTTTGTTTTGCTGCTGCAG+AGG - Chr3:47556725-47556744 None:intergenic 45.0%
!! AGAAAAATATTTAATTAAAA+CGG - Chr3:47554900-47554919 None:intergenic 5.0%
AAGATATGTGTCCCCGGATG+TGG + Chr3:47555198-47555217 MsG0380013894.01.T01:CDS 50.0%
AGAAGTGGAAGAGCTAGTGG+AGG - Chr3:47556952-47556971 None:intergenic 50.0%
AGCTCCCCCTAAATCTAAGG+CGG + Chr3:47554368-47554387 MsG0380013894.01.T01:intron 50.0%
ATGTCCGACTTCAAGAAGCC+CGG + Chr3:47553913-47553932 MsG0380013894.01.T01:CDS 50.0%
ATGTCGAGAGCTTACGCGTT+TGG - Chr3:47553775-47553794 None:intergenic 50.0%
GAAGGAACAACTTCTGCTGC+AGG - Chr3:47557547-47557566 None:intergenic 50.0%
GAAGTAACAGCTTCTGCTGC+AGG - Chr3:47551974-47551993 None:intergenic 50.0%
GCAAGCTCCCCCTAAATCTA+AGG + Chr3:47554365-47554384 MsG0380013894.01.T01:intron 50.0%
GCATATGGCAATCGTGGACT+TGG - Chr3:47556577-47556596 None:intergenic 50.0%
GCGACAAACACTCCTTCCTT+TGG + Chr3:47556846-47556865 MsG0380013894.01.T01:intron 50.0%
GGGGAAGCAGATGCATTATG+CGG + Chr3:47555857-47555876 MsG0380013894.01.T01:CDS 50.0%
GGTCTGTCCTGATGAAGATG+AGG + Chr3:47551831-47551850 MsG0380013894.01.T01:CDS 50.0%
GTCAGATTCTTGCGCCTTGA+AGG - Chr3:47553563-47553582 None:intergenic 50.0%
TATAGGCAAGAGGCAAGCTG+AGG + Chr3:47553353-47553372 MsG0380013894.01.T01:intron 50.0%
TATAGGCAAGAGGCAAGCTG+TGG + Chr3:47553353-47553372 MsG0380013894.01.T01:intron 50.0%
TGGAGAAGTGGAAGAGCTAG+TGG - Chr3:47556955-47556974 None:intergenic 50.0%
! ATCTATGAAGTCTGGAGCGG+AGG + Chr3:47555154-47555173 MsG0380013894.01.T01:intron 50.0%
! GACCATGGCTGAAATGGACT+TGG + Chr3:47551149-47551168 MsG0380013894.01.T01:CDS 50.0%
! TCCGGCTTTTGAATCGAGCT+AGG - Chr3:47557004-47557023 None:intergenic 50.0%
! TGCGGGTGCACTTCCTATTT+TGG - Chr3:47557569-47557588 None:intergenic 50.0%
!! ATCAGAGTTGGTCTTCGGGA+CGG - Chr3:47555733-47555752 None:intergenic 50.0%
!! GGTGCACTCCCATTTTTGGA+TGG - Chr3:47557334-47557353 None:intergenic 50.0%
!! GTCAGTGTTGGTCTTTGGGA+TGG - Chr3:47551375-47551394 None:intergenic 50.0%
AACTCAGCTGAAAGTGGCGG+AGG + Chr3:47554083-47554102 MsG0380013894.01.T01:CDS 55.0%
ACTCCCGGGCTTCTTGAAGT+CGG - Chr3:47553920-47553939 None:intergenic 55.0%
ATGCGTTCTGCGGAGACCAA+AGG + Chr3:47551509-47551528 MsG0380013894.01.T01:CDS 55.0%
CGTAACCGAGGATAGCGTCT+TGG - Chr3:47555339-47555358 None:intergenic 55.0%
GAGTGGCGTCCATATCCTCA+AGG + Chr3:47553936-47553955 MsG0380013894.01.T01:CDS 55.0%
GATAGAGGCTCCCCCTGATT+AGG + Chr3:47554763-47554782 MsG0380013894.01.T01:intron 55.0%
GATCGCCAAGACGCTATCCT+CGG + Chr3:47555331-47555350 MsG0380013894.01.T01:CDS 55.0%
GCAAGCTGTGGAAGAAGTCG+AGG + Chr3:47557080-47557099 MsG0380013894.01.T01:CDS 55.0%
GGGGAGCCTCTATCAGATTC+AGG - Chr3:47554757-47554776 None:intergenic 55.0%
GTCCCGAAGACCAACTCTGA+TGG + Chr3:47555732-47555751 MsG0380013894.01.T01:CDS 55.0%
GTTGCAGCGGATGATCTCCT+AGG + Chr3:47551006-47551025 MsG0380013894.01.T01:CDS 55.0%
TCACTTCACGAGGCTCGTTC+AGG - Chr3:47551795-47551814 None:intergenic 55.0%
TGTCCGACTTCAAGAAGCCC+GGG + Chr3:47553914-47553933 MsG0380013894.01.T01:CDS 55.0%
TTTGCTGCTGCAGAGGGCTT+AGG - Chr3:47556718-47556737 None:intergenic 55.0%
! AGGAAGTGCACCCGCAAAGA+AGG + Chr3:47557573-47557592 MsG0380013894.01.T01:CDS 55.0%
! CGCTACTCGACTTGTGACCA+TGG + Chr3:47551134-47551153 MsG0380013894.01.T01:CDS 55.0%
!! GATGGGTTATGAGGAGGAGG+CGG + Chr3:47551415-47551434 MsG0380013894.01.T01:CDS 55.0%
!! GCAAGGTGCTGCTTACGTCT+CGG + Chr3:47551346-47551365 MsG0380013894.01.T01:intron 55.0%
!! GGAGGCTTTGTCAGGGGTTT+TGG + Chr3:47554104-47554123 MsG0380013894.01.T01:CDS 55.0%
!! TCAGAGTTGGTCTTCGGGAC+GGG - Chr3:47555732-47555751 None:intergenic 55.0%
AGGATATGGACGCCACTCCC+GGG - Chr3:47553934-47553953 None:intergenic 60.0%
CGTCTCTTACGACCACACCC+GGG - Chr3:47550897-47550916 None:intergenic 60.0%
GACTTCAAGAAGCCCGGGAG+TGG + Chr3:47553919-47553938 MsG0380013894.01.T01:CDS 60.0%
GAGGATATGGACGCCACTCC+CGG - Chr3:47553935-47553954 None:intergenic 60.0%
GAGGCTGAGGCTGAGGTATG+CGG - Chr3:47556797-47556816 None:intergenic 60.0%
GCGTCTCTTACGACCACACC+CGG - Chr3:47550898-47550917 None:intergenic 60.0%
GCTTAGAGAGGCTGAGGCTG+AGG - Chr3:47556804-47556823 None:intergenic 60.0%
GGGGAAGCAGATGCGTTCTG+CGG + Chr3:47551499-47551518 MsG0380013894.01.T01:CDS 60.0%
GTCTCTTACGACCACACCCG+GGG - Chr3:47550896-47550915 None:intergenic 60.0%
! TCAGCTGAAAGTGGCGGAGG+AGG + Chr3:47554086-47554105 MsG0380013894.01.T01:CDS 60.0%
! TGGCGGAGGAGGCTTTGTCA+GGG + Chr3:47554097-47554116 MsG0380013894.01.T01:CDS 60.0%
CTGCTGCAGAGGGCTTAGGC+GGG - Chr3:47556714-47556733 None:intergenic 65.0%
GCTGCTGCAGAGGGCTTAGG+CGG - Chr3:47556715-47556734 None:intergenic 65.0%
TGCTGCAGAGGGCTTAGGCG+GGG - Chr3:47556713-47556732 None:intergenic 65.0%
! GGCGGAGGAGGCTTTGTCAG+GGG + Chr3:47554098-47554117 MsG0380013894.01.T01:CDS 65.0%
! GTGGCGGAGGAGGCTTTGTC+AGG + Chr3:47554096-47554115 MsG0380013894.01.T01:CDS 65.0%
GCTGCAGAGGGCTTAGGCGG+GGG - Chr3:47556712-47556731 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 47550886 47557651 47550886 ID=MsG0380013894.01;Name=MsG0380013894.01
Chr3 mRNA 47550886 47557651 47550886 ID=MsG0380013894.01.T01;Parent=MsG0380013894.01;Name=MsG0380013894.01.T01;_AED=0.48;_eAED=0.79;_QI=0|0|0|1|0.93|0.93|16|0|688
Chr3 exon 47550886 47551176 47550886 ID=MsG0380013894.01.T01:exon:26330;Parent=MsG0380013894.01.T01
Chr3 exon 47551347 47551530 47551347 ID=MsG0380013894.01.T01:exon:26331;Parent=MsG0380013894.01.T01
Chr3 exon 47551785 47551852 47551785 ID=MsG0380013894.01.T01:exon:26332;Parent=MsG0380013894.01.T01
Chr3 exon 47551968 47552069 47551968 ID=MsG0380013894.01.T01:exon:26333;Parent=MsG0380013894.01.T01
Chr3 exon 47552558 47552606 47552558 ID=MsG0380013894.01.T01:exon:26334;Parent=MsG0380013894.01.T01
Chr3 exon 47553358 47553437 47553358 ID=MsG0380013894.01.T01:exon:26335;Parent=MsG0380013894.01.T01
Chr3 exon 47553538 47553584 47553538 ID=MsG0380013894.01.T01:exon:26336;Parent=MsG0380013894.01.T01
Chr3 exon 47553662 47553779 47553662 ID=MsG0380013894.01.T01:exon:26337;Parent=MsG0380013894.01.T01
Chr3 exon 47553876 47553979 47553876 ID=MsG0380013894.01.T01:exon:26338;Parent=MsG0380013894.01.T01
Chr3 exon 47554079 47554148 47554079 ID=MsG0380013894.01.T01:exon:26339;Parent=MsG0380013894.01.T01
Chr3 exon 47554932 47555010 47554932 ID=MsG0380013894.01.T01:exon:26340;Parent=MsG0380013894.01.T01
Chr3 exon 47555164 47555492 47555164 ID=MsG0380013894.01.T01:exon:26341;Parent=MsG0380013894.01.T01
Chr3 exon 47555705 47555888 47555705 ID=MsG0380013894.01.T01:exon:26342;Parent=MsG0380013894.01.T01
Chr3 exon 47557073 47557209 47557073 ID=MsG0380013894.01.T01:exon:26343;Parent=MsG0380013894.01.T01
Chr3 exon 47557310 47557423 47557310 ID=MsG0380013894.01.T01:exon:26344;Parent=MsG0380013894.01.T01
Chr3 exon 47557541 47557651 47557541 ID=MsG0380013894.01.T01:exon:26345;Parent=MsG0380013894.01.T01
Chr3 CDS 47550886 47551176 47550886 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47551347 47551530 47551347 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47551785 47551852 47551785 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47551968 47552069 47551968 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47552558 47552606 47552558 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47553358 47553437 47553358 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47553538 47553584 47553538 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47553662 47553779 47553662 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47553876 47553979 47553876 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47554079 47554148 47554079 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47554932 47555010 47554932 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47555164 47555492 47555164 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47555705 47555888 47555705 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47557073 47557209 47557073 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47557310 47557423 47557310 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Chr3 CDS 47557541 47557651 47557541 ID=MsG0380013894.01.T01:cds;Parent=MsG0380013894.01.T01
Gene Sequence

>MsG0380013894.01.T01

ATGGTGTCCCCGGGTGTGGTCGTAAGAGACGCAACACCTGTTGACCTATATAAGATTCTGGTGAATGATGTCTTTCCTGACGTGGATACTCAAAGTTTGGTGAATGGTAAGCTTCTTCAAGTTGCAGCGGATGATCTCCTAGGCATTATCTTCGGTTACATCGTCTTTGATGTTGGTGAACTGAAGCGTACTAGTTACGGTCATATCACTTCCCTCTTCGTTAGCCCTATCTTTCGGAGAAAAGGACACGCTACTCGACTTGTGACCATGGCTGAAATGGACTTGGAAAAGCAAGGTGCTGCTTACGTCTCGGTGCCCATCCCAAAGACCAACACTGACGCATTACTCTTCTTCGAAAAGATGGGTTATGAGGAGGAGGCGGTGAAGAGCAATAGTATTGATGGGAATGTTGATGCTAATGTAATCATGACGAAGAAGCTCAAGGGGAAGCAGATGCGTTCTGCGGAGACCAAAGGGTCTGTCCTGAACGAGCCTCGTGAAGTGAAGTTATTACATCTTAGGGTCTGTCCTGATGAAGATGAGAAACCTGCAGCAGAAGCTGTTACTTCTAAAATAAGGAATGCAACCGCAAAGAAAGCTGATAGTTCTGATGAAGAATCGGATGAATCTTCTGATGAAGATGAGGTTGATGTTGCTCCTGTTGTTGTTTCTCCTGTGAAGTCTGTAATGAACGGCAAGAGGCAAGCTGAGGAAGAAGTCAGAGCAGTGACTTCAAAGAAGCAAAAGGTAGATGAGGTTGCTGCCAAACAAAAGACAATATATGTTGGGAACTTATCCTTCAAGGCGCAAGAATCTGACATAATAAATTTTTTCCAAGATTGTGGGATGGTTGTTGATGTATGTCTTGGTTATGGTAAGAGAAAAAGGCCACTAGGCTATGCACATGTTGAGTTTGAAACTGCAGAGGAAGCCAAACGCGCACTTGATAAGAATGGGGAAAAACTGTTGGATCGTGATGTCCGACTTCAAGAAGCCCGGGAGTGGCGTCCATATCCTCAAGGATATCCTCTTATTATTGGAAGTAACAACTCAGCTGAAAGTGGCGGAGGAGGCTTTGTCAGGGGTTTTGGTAAGAGTAATGGAGAGGATGAGAACCCTGAAGCAGAAGCTGTTTCTTCTAAAATAGGGAGTGCACTTGAAAAGAAAGCGGATATTCATTTTGTTTCATCTATCTGGAGCGGAGGAGTCACCCAAATTCGTTATGCAAGATATGTGTCCCCGGATGTGGTCTTAAGAAACGCAACATCTGACGACATATTTAAGATTCTCGTGGATTATCTCTTACCTGACGTGGATCTTGAAAGTTTGGAGAATGGTAAGATTCTTCAAGTCGCGGATGATCGCCAAGACGCTATCCTCGGTTACGTCATCTTTGATGTCGTTGAACCGAAGAGTAATGGTTGTGGTCATATCACTTCCATCTTCGTTAACCCTATCTTTCGGAGAGAAGGAGTCGCTTCTAAACTTGTGGAAAGCGCTGAAAAGGACTTGAGGGATAAGCAAGGTGCTGCTTACGTCTCAGTGCCCGTCCCGAAGACCAACTCTGATGGATTACTCTTCTTCGAAAAGATGGGGTATGAGAAGGAGGCAGTGAAGAGCAATTATATTGATGGGAAGGATGATGCTAATGTCATCATGACGAAGAAGTTCGAGGGGAAGCAGATGCATTATGCGGAGACTGAAGGCAAGAGGCAAGCTGTGGAAGAAGTCGAGGAAGTTTCTTCAAAGAAGCAAAAGGTAGATGAGGTTGCTGCCAAACAAAAGGTATTGAAGGTAGTCAAAATTAGTTCGCAGGAATCCTTTCATGAATCTGAGGATGTGAACCCTGCAACAAAAGTTGTTCCATCCAAAAATGGGAGTGCACCTGTAAAGAAAGACGATCTTTATTATTCATCTTCTGAAGAATCTTCTGGTGAATCTTCTGATGAAGATGAGAAACCTGCAGCAGAAGTTGTTCCTTCCAAAATAGGAAGTGCACCCGCAAAGAAGGCTGATAGTTCTGACCAAGAATCTGACGAATCTTCTGGTGAAGATGAGGCGAGTTAA
Protein sequence

>MsG0380013894.01.T01

MVSPGVVVRDATPVDLYKILVNDVFPDVDTQSLVNGKLLQVAADDLLGIIFGYIVFDVGELKRTSYGHITSLFVSPIFRRKGHATRLVTMAEMDLEKQGAAYVSVPIPKTNTDALLFFEKMGYEEEAVKSNSIDGNVDANVIMTKKLKGKQMRSAETKGSVLNEPREVKLLHLRVCPDEDEKPAAEAVTSKIRNATAKKADSSDEESDESSDEDEVDVAPVVVSPVKSVMNGKRQAEEEVRAVTSKKQKVDEVAAKQKTIYVGNLSFKAQESDIINFFQDCGMVVDVCLGYGKRKRPLGYAHVEFETAEEAKRALDKNGEKLLDRDVRLQEAREWRPYPQGYPLIIGSNNSAESGGGGFVRGFGKSNGEDENPEAEAVSSKIGSALEKKADIHFVSSIWSGGVTQIRYARYVSPDVVLRNATSDDIFKILVDYLLPDVDLESLENGKILQVADDRQDAILGYVIFDVVEPKSNGCGHITSIFVNPIFRREGVASKLVESAEKDLRDKQGAAYVSVPVPKTNSDGLLFFEKMGYEKEAVKSNYIDGKDDANVIMTKKFEGKQMHYAETEGKRQAVEEVEEVSSKKQKVDEVAAKQKVLKVVKISSQESFHESEDVNPATKVVPSKNGSAPVKKDDLYYSSSEESSGESSDEDEKPAAEVVPSKIGSAPAKKADSSDQESDESSGEDEAS*