AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020134.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020134.01.T01 MTR_0072s0050 88.042 577 40 4 1 558 1 567 0.0 836
MsG0480020134.01.T01 MTR_2g090095 42.947 475 243 11 69 529 63 523 2.24e-96 306
MsG0480020134.01.T01 MTR_2g090095 45.553 371 154 10 185 529 1 349 5.36e-80 258
MsG0480020134.01.T01 MTR_7g116780 35.971 139 73 2 209 347 5 127 1.84e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020134.01.T01 AT1G03530 63.000 200 61 4 139 332 336 528 6.76e-74 251

Find 170 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCATTCTTTGACTTAAT+TGG 0.194631 4:-34807050 None:intergenic
TTGCGTCCTAGTCCTATTTC+TGG 0.204288 4:+34810334 MsG0480020134.01.T01:CDS
CCTCCTTCAGTTGAGGTTAA+TGG 0.210342 4:+34806792 MsG0480020134.01.T01:CDS
GTTCCGACCCGTTATTGTTT+TGG 0.239619 4:-34806584 None:intergenic
CGCAAGTTAAGGTTTCTTTC+TGG 0.250581 4:-34810316 None:intergenic
GCAGCACCATTTGTTAATAA+TGG 0.254670 4:+34809854 MsG0480020134.01.T01:CDS
TCTCATCAGTTTCCTGTTCC+AGG 0.263709 4:+34810079 MsG0480020134.01.T01:CDS
AGCACATGTTCAGCAAATTC+TGG 0.272472 4:-34809566 None:intergenic
TGCTGTTGAAATGGAATTCC+TGG 0.277475 4:-34810097 None:intergenic
GGTTTAGTTGATGAAATCTT+TGG 0.291789 4:+34809449 MsG0480020134.01.T01:CDS
CTTTCCACGGATTTCTCAAT+AGG 0.293547 4:-34806750 None:intergenic
TGAACATGTGCTCAATAATA+AGG 0.296281 4:+34809577 MsG0480020134.01.T01:CDS
AAGTTAGGACCTGCATTTAA+AGG 0.297546 4:-34809938 None:intergenic
GACTCCGCCGCAAAAGGGTT+CGG 0.313735 4:-34806687 None:intergenic
CTCCTTCAGTTGAGGTTAAT+GGG 0.314982 4:+34806793 MsG0480020134.01.T01:CDS
ATTGAATTTGCAGCAAAGTT+AGG 0.318590 4:-34809953 None:intergenic
TAAGTCAAAGAATGAGATTC+AGG 0.320696 4:+34807055 MsG0480020134.01.T01:CDS
CCTTGTCCAATGCCTGAAAA+AGG 0.322674 4:-34809887 None:intergenic
GCCGAAAAGCTTGGTACTTC+GGG 0.336858 4:+34806717 MsG0480020134.01.T01:CDS
GGTTGTTGTGAAAATATATT+AGG 0.342098 4:-34810172 None:intergenic
TCAATAATAAGGATCTTTAC+AGG 0.352711 4:+34809588 MsG0480020134.01.T01:CDS
GGAAGGATTGTTGTGGCATT+TGG 0.353332 4:-34810225 None:intergenic
CACAAACCCCGGTGCATACA+TGG 0.358416 4:-34810194 None:intergenic
TATCTTTCAAACGCAGCAAC+AGG 0.364577 4:+34810267 MsG0480020134.01.T01:CDS
GCATTTGAAGGAAATGCATT+TGG 0.370357 4:-34810025 None:intergenic
ACCGGTGACTCCGCCGCAAA+AGG 0.372001 4:-34806693 None:intergenic
CACACATCCACTGGAGGAAC+TGG 0.373095 4:-34807818 None:intergenic
TGAGAGGGGTTGCCAGAAAT+AGG 0.376962 4:-34810346 None:intergenic
CAATTTCATCCTGGTTCATC+AGG 0.378170 4:+34810367 MsG0480020134.01.T01:CDS
GGTGCTGCTGCAGGTGCGTT+AGG 0.391766 4:-34809839 None:intergenic
GGAGGTAACACATGCTCTTT+CGG 0.393457 4:-34809776 None:intergenic
GGATTCATTTGCTGTTGAAA+TGG 0.402802 4:-34810106 None:intergenic
ACTCCGCCGCAAAAGGGTTC+GGG 0.409373 4:-34806686 None:intergenic
TGTTGCTGCGTTTGAAAGAT+AGG 0.411692 4:-34810265 None:intergenic
TTGTATCTCACAACATAATA+CGG 0.411728 4:-34809485 None:intergenic
GTCTCCGCCGTAACAAGGTT+CGG 0.411840 4:-34806612 None:intergenic
TCATTTCAATGTCACCTTGA+AGG 0.418374 4:-34810439 None:intergenic
CCTGCATTTAAAGGTTGAAA+TGG 0.422283 4:-34809929 None:intergenic
GGCCGAAAAGCTTGGTACTT+CGG 0.424127 4:+34806716 MsG0480020134.01.T01:CDS
AAGGAAATGCATTTGGAGGC+AGG 0.440883 4:-34810018 None:intergenic
TAGGACTAGGACGCAAGTTA+AGG 0.443903 4:-34810327 None:intergenic
TCTCCGCCGTAACAAGGTTC+GGG 0.445073 4:-34806611 None:intergenic
TGGAAACCCAAAACAATAAC+GGG 0.448647 4:+34806577 MsG0480020134.01.T01:CDS
TGAAATGGAATTCCTGGAAC+AGG 0.448959 4:-34810091 None:intergenic
TCGTCATCATCGTCGACGTC+TGG 0.450723 4:+34806897 MsG0480020134.01.T01:CDS
GTGGAAAGGATCACGTTAAC+GGG 0.452065 4:+34806765 MsG0480020134.01.T01:CDS
CGTGGAAAGGATCACGTTAA+CGG 0.452422 4:+34806764 MsG0480020134.01.T01:CDS
GATGTTCCTGCGGGGATCCA+AGG 0.456245 4:+34809518 MsG0480020134.01.T01:CDS
CATGTATGCACCGGGGTTTG+TGG 0.457836 4:+34810195 MsG0480020134.01.T01:CDS
GGAGAGGGTGGCAACCTTCA+AGG 0.458565 4:+34810425 MsG0480020134.01.T01:CDS
CAACTAAACCTAGTGGTTTG+CGG 0.462976 4:-34809436 None:intergenic
TGCACCCCAGGCATCATAGT+TGG 0.464224 4:-34810148 None:intergenic
GATAAGTGATGATGAGAAGA+TGG 0.464299 4:+34806974 MsG0480020134.01.T01:CDS
ATGATGAGAAGATGGTTAGT+TGG 0.469112 4:+34806982 MsG0480020134.01.T01:CDS
ATGCTGAAGATGAAGAAGAA+GGG 0.469741 4:+34806949 MsG0480020134.01.T01:CDS
CCATTTCAACCTTTAAATGC+AGG 0.469863 4:+34809929 MsG0480020134.01.T01:CDS
AAAAGCTTAGCAACAACAAC+GGG 0.470692 4:+34806652 MsG0480020134.01.T01:CDS
CATTTCCCAACTATGATGCC+TGG 0.471966 4:+34810142 MsG0480020134.01.T01:CDS
AGAACAGAACCCTCATTAAG+AGG 0.475235 4:-34809398 None:intergenic
TTCTGGCTGCGGCAAATCAG+TGG 0.475638 4:-34810299 None:intergenic
TAGTTTCCATTATTAACAAA+TGG 0.476251 4:-34809860 None:intergenic
ATGAGAAAGAGGCTGAATAC+AGG 0.476574 4:+34809675 MsG0480020134.01.T01:CDS
CCGGTGACTCCGCCGCAAAA+GGG 0.479820 4:-34806692 None:intergenic
ATGTATGCACCGGGGTTTGT+GGG 0.480761 4:+34810196 MsG0480020134.01.T01:CDS
AACCCCTCTCAATTTCATCC+TGG 0.481613 4:+34810358 MsG0480020134.01.T01:CDS
TGTGGTGCTACAGGTGCATT+AGG 0.482360 4:-34809797 None:intergenic
TTTCGTGGGGCCGGTAGGAG+AGG 0.484459 4:+34810409 MsG0480020134.01.T01:CDS
GCACCCCAGGCATCATAGTT+GGG 0.484511 4:-34810147 None:intergenic
ATGTTCCTGCGGGGATCCAA+GGG 0.491170 4:+34809519 MsG0480020134.01.T01:CDS
AGGAAAGGCTATGATGCATC+TGG 0.493922 4:+34809608 MsG0480020134.01.T01:CDS
TAATATGACATGGCATTTGA+AGG 0.495859 4:-34810037 None:intergenic
GCCGTAACAAGGTTCGGGTC+AGG 0.496045 4:-34806606 None:intergenic
TTCGTGGGGCCGGTAGGAGA+GGG 0.496167 4:+34810410 MsG0480020134.01.T01:CDS
ATTTCCCAACTATGATGCCT+GGG 0.499694 4:+34810143 MsG0480020134.01.T01:CDS
GACAAATTTCACCTTAACAA+TGG 0.500403 4:+34806557 None:intergenic
GGGAATGAGGATAAAGATGA+TGG 0.501692 4:+34806813 MsG0480020134.01.T01:CDS
CAACAACCCATGTATGCACC+GGG 0.503867 4:+34810187 MsG0480020134.01.T01:CDS
CTACCGGCCCCACGAAATGA+TGG 0.504222 4:-34810403 None:intergenic
GGGGTAAATGATCAAAATCC+TGG 0.504975 4:+34809722 MsG0480020134.01.T01:CDS
ATGGAAACCCAAAACAATAA+CGG 0.505484 4:+34806576 MsG0480020134.01.T01:CDS
GTGCTGCTGCAGGTGCGTTA+GGG 0.506725 4:-34809838 None:intergenic
ACCTGACCCGAACCTTGTTA+CGG 0.508969 4:+34806605 MsG0480020134.01.T01:CDS
AGTTGATGAAATCTTTGGAC+CGG 0.513400 4:+34809454 MsG0480020134.01.T01:CDS
TTAACAAATGGTGCTGCTGC+AGG 0.524634 4:-34809848 None:intergenic
TGCTGAAGATGAAGAAGAAG+GGG 0.528073 4:+34806950 MsG0480020134.01.T01:CDS
TCTGAAAATGATGTTCCTGC+GGG 0.528260 4:+34809509 MsG0480020134.01.T01:CDS
TCACCGGTGGCCGAAAAGCT+TGG 0.529066 4:+34806708 MsG0480020134.01.T01:CDS
AGTTGAGGTTAATGGGAATG+AGG 0.530184 4:+34806800 MsG0480020134.01.T01:CDS
AGACCATCATTTCGTGGGGC+CGG 0.530462 4:+34810400 MsG0480020134.01.T01:CDS
TTTGAAGGAAATGCATTTGG+AGG 0.531200 4:-34810022 None:intergenic
AACACATGATGTGGTGCTAC+AGG 0.534154 4:-34809806 None:intergenic
TTTCTTCTTTGACAGACTCT+CGG 0.535720 4:+34809338 MsG0480020134.01.T01:intron
GATGCTGAAGATGAAGAAGA+AGG 0.539469 4:+34806948 MsG0480020134.01.T01:CDS
AATATATTAGGCTGCACCCC+AGG 0.540338 4:-34810160 None:intergenic
TTAAGGTTTCTTTCTGGCTG+CGG 0.542256 4:-34810310 None:intergenic
AATAAGGATCTTTACAGGAA+AGG 0.542882 4:+34809593 MsG0480020134.01.T01:CDS
GATGATGAAGATGTTGTAGT+AGG 0.545558 4:+34807026 MsG0480020134.01.T01:CDS
TTTGGAGGCAGGGTAGGCTG+TGG 0.545648 4:-34810007 None:intergenic
ACAACAACCCATGTATGCAC+CGG 0.546197 4:+34810186 MsG0480020134.01.T01:CDS
CATCATTTCGTGGGGCCGGT+AGG 0.546691 4:+34810404 MsG0480020134.01.T01:CDS
CGAGGGAGACCATCATTTCG+TGG 0.548565 4:+34810394 MsG0480020134.01.T01:CDS
TGCTGCAGGTGCGTTAGGGA+CGG 0.549837 4:-34809834 None:intergenic
TTAATGAGGGTTCTGTTCTG+TGG 0.552326 4:+34809402 MsG0480020134.01.T01:CDS
GTGGGGCCGGTAGGAGAGGG+TGG 0.552342 4:+34810413 MsG0480020134.01.T01:CDS
GAAGCATGAACCTCTTAATG+AGG 0.553949 4:+34809388 MsG0480020134.01.T01:CDS
AGGGTAGGCTGTGGCTGCTG+TGG 0.557594 4:-34809998 None:intergenic
AATGCATTTGGAGGCAGGGT+AGG 0.561729 4:-34810013 None:intergenic
GGTGCTAAACACACATCCAC+TGG 0.561774 4:-34807827 None:intergenic
TCTGGCTGCGGCAAATCAGT+GGG 0.565416 4:-34810298 None:intergenic
TGTATCTCACAACATAATAC+GGG 0.565567 4:-34809484 None:intergenic
TAGATGTCTCCGCCGTAACA+AGG 0.570078 4:-34806617 None:intergenic
CGTTAACGTGATCCTTTCCA+CGG 0.570914 4:-34806763 None:intergenic
TGGGAAATGAGTTCCATGAC+TGG 0.573239 4:-34810128 None:intergenic
GAGGGAGACCATCATTTCGT+GGG 0.576338 4:+34810395 MsG0480020134.01.T01:CDS
CCATTAACCTCAACTGAAGG+AGG 0.578894 4:-34806792 None:intergenic
CAGCAAATGAATCCCAGTCA+TGG 0.580140 4:+34810115 MsG0480020134.01.T01:CDS
TTCTGAAAATGATGTTCCTG+CGG 0.582447 4:+34809508 MsG0480020134.01.T01:CDS
AGGAAATGCATTTGGAGGCA+GGG 0.582612 4:-34810017 None:intergenic
ACAAACCCCGGTGCATACAT+GGG 0.586613 4:-34810193 None:intergenic
ACTGAAAGCCGCAAACCACT+AGG 0.586696 4:+34809428 MsG0480020134.01.T01:CDS
CCTGGTTCATCAGGTAGTCG+AGG 0.589472 4:+34810376 MsG0480020134.01.T01:CDS
GGGAAATGAGTTCCATGACT+GGG 0.590419 4:-34810127 None:intergenic
GGGTGACCCTCCTTCAGTTG+AGG 0.594381 4:+34806785 MsG0480020134.01.T01:CDS
TTTGCCTCCAGTTCCTCCAG+TGG 0.595735 4:+34807811 MsG0480020134.01.T01:CDS
AGGTTGCCACCCTCTCCTAC+CGG 0.595903 4:-34810419 None:intergenic
GAACCAGGATGAAATTGAGA+GGG 0.598532 4:-34810361 None:intergenic
GGGTTGCCAGAAATAGGACT+AGG 0.599568 4:-34810340 None:intergenic
CCTCGACTACCTGATGAACC+AGG 0.599976 4:-34810376 None:intergenic
GTTAGTTGGAGTGCGGCTGA+TGG 0.600500 4:+34806996 MsG0480020134.01.T01:CDS
GCAGGTGCGTTAGGGACGGT+AGG 0.605527 4:-34809830 None:intergenic
TTCCCATTAACCTCAACTGA+AGG 0.606193 4:-34806795 None:intergenic
TCTCGGAGCTCAAGTCATTG+TGG 0.608772 4:+34809355 MsG0480020134.01.T01:CDS
TTTCCCAACTATGATGCCTG+GGG 0.613751 4:+34810144 MsG0480020134.01.T01:CDS
GGAGCTCAAGTCATTGTGGA+AGG 0.615668 4:+34809359 MsG0480020134.01.T01:CDS
CTGGTTCATCAGGTAGTCGA+GGG 0.619589 4:+34810377 MsG0480020134.01.T01:CDS
CACCATAAAATGCTACCTGT+GGG 0.623469 4:+34807851 MsG0480020134.01.T01:CDS
CTATTGAGAAATCCGTGGAA+AGG 0.625941 4:+34806751 MsG0480020134.01.T01:CDS
AACCCAAAACAATAACGGGT+CGG 0.626765 4:+34806581 MsG0480020134.01.T01:CDS
ATCTGTTGGAAGGATTGTTG+TGG 0.627519 4:-34810232 None:intergenic
ATCTTTCAAACGCAGCAACA+GGG 0.628258 4:+34810268 MsG0480020134.01.T01:CDS
TCAAGTCATTGTGGAAGGAG+TGG 0.631477 4:+34809364 MsG0480020134.01.T01:CDS
GATAAAGATGATGGAGGTGA+AGG 0.632062 4:+34806822 MsG0480020134.01.T01:CDS
ATTTCATCAACTAAACCTAG+TGG 0.632993 4:-34809443 None:intergenic
ACCGACATAACAACTCCCAC+AGG 0.634585 4:-34807866 None:intergenic
ACACCATAAAATGCTACCTG+TGG 0.634996 4:+34807850 MsG0480020134.01.T01:CDS
ACGGTAGGAAACACATGATG+TGG 0.637817 4:-34809815 None:intergenic
GGTGCTACAGGTGCATTAGG+AGG 0.638012 4:-34809794 None:intergenic
TGAACCAGGATGAAATTGAG+AGG 0.638944 4:-34810362 None:intergenic
TAGGTGGTTGCTGAATCTGT+TGG 0.639877 4:-34810246 None:intergenic
AAGCATGAACCTCTTAATGA+GGG 0.641077 4:+34809389 MsG0480020134.01.T01:CDS
GGCTGCGGCAAATCAGTGGG+TGG 0.644208 4:-34810295 None:intergenic
GTTCCTGCGGGGATCCAAGG+GGG 0.649023 4:+34809521 MsG0480020134.01.T01:CDS
ACATCCACTGGAGGAACTGG+AGG 0.650287 4:-34807815 None:intergenic
TGGTTGCTGAATCTGTTGGA+AGG 0.656336 4:-34810242 None:intergenic
AATTCCTATTGAGAAATCCG+TGG 0.661129 4:+34806746 MsG0480020134.01.T01:CDS
AGGGAGACCATCATTTCGTG+GGG 0.664098 4:+34810396 MsG0480020134.01.T01:CDS
ACCTGTGGGAGTTGTTATGT+CGG 0.664217 4:+34807865 MsG0480020134.01.T01:CDS
CATTAACCTCAACTGAAGGA+GGG 0.668718 4:-34806791 None:intergenic
TGCTGCGTTTGAAAGATAGG+TGG 0.671110 4:-34810262 None:intergenic
GCTAAACACACATCCACTGG+AGG 0.675971 4:-34807824 None:intergenic
GAAAAGCTTAGCAACAACAA+CGG 0.677921 4:+34806651 MsG0480020134.01.T01:CDS
ACTTTGCTGCAAATTCAATG+TGG 0.680521 4:+34809957 MsG0480020134.01.T01:CDS
TGTTCCTGCGGGGATCCAAG+GGG 0.689084 4:+34809520 MsG0480020134.01.T01:CDS
AACCAGGATGAAATTGAGAG+GGG 0.690537 4:-34810360 None:intergenic
CTGAAAATGATGTTCCTGCG+GGG 0.698469 4:+34809510 MsG0480020134.01.T01:CDS
AATGAGGATAAAGATGATGG+AGG 0.698737 4:+34806816 MsG0480020134.01.T01:CDS
AGGTTGAAATGGTGAAACTG+TGG 0.703613 4:-34809918 None:intergenic
TGACCCGAACCTTGTTACGG+CGG 0.720208 4:+34806608 MsG0480020134.01.T01:CDS
GAAGATGGTTAGTTGGAGTG+CGG 0.757022 4:+34806989 MsG0480020134.01.T01:CDS
AACAACCCATGTATGCACCG+GGG 0.786063 4:+34810188 MsG0480020134.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTATGTAAATATTACTTA+CGG - Chr4:34807457-34807476 None:intergenic 15.0%
!! TTAAAAAATTCTATACTTTC+TGG - Chr4:34808133-34808152 None:intergenic 15.0%
!!! TTTATTTTCATTCATAAAGT+AGG + Chr4:34807095-34807114 MsG0480020134.01.T01:intron 15.0%
!! AATACATGAAATATATCAGA+AGG + Chr4:34809286-34809305 MsG0480020134.01.T01:intron 20.0%
!! ACACTTGATTTAAAAAGATA+GGG - Chr4:34809245-34809264 None:intergenic 20.0%
!! ACTAATGATAATATGATGTT+TGG - Chr4:34808196-34808215 None:intergenic 20.0%
!! ATACATGAAATATATCAGAA+GGG + Chr4:34809287-34809306 MsG0480020134.01.T01:intron 20.0%
!! GATAACATGTATATAATCTT+TGG - Chr4:34807408-34807427 None:intergenic 20.0%
!! TAGTTTCCATTATTAACAAA+TGG - Chr4:34809863-34809882 None:intergenic 20.0%
!! TATATATATACTTGACAACA+TGG + Chr4:34807497-34807516 MsG0480020134.01.T01:intron 20.0%
!!! AAATAAAGGTATTTGAGTAA+CGG - Chr4:34808755-34808774 None:intergenic 20.0%
!!! AACTTTGAAAATATCTTGAA+TGG + Chr4:34807772-34807791 MsG0480020134.01.T01:intron 20.0%
!!! ATTATCTGGTTTTATTTAGA+AGG + Chr4:34807241-34807260 MsG0480020134.01.T01:intron 20.0%
!!! ATTATGTTCAAGCTTTTTTA+CGG - Chr4:34808395-34808414 None:intergenic 20.0%
!!! CTTCATTGATAATTAAAGAT+GGG + Chr4:34807310-34807329 MsG0480020134.01.T01:intron 20.0%
!!! TATTTGATTTTTCATGTAAC+TGG - Chr4:34808103-34808122 None:intergenic 20.0%
!!! TTCATTGATAATTAAAGATG+GGG + Chr4:34807311-34807330 MsG0480020134.01.T01:intron 20.0%
! AAATAACAGTGTAGAACTTT+AGG - Chr4:34808706-34808725 None:intergenic 25.0%
! AAATCCCTAAAAATAGTAGT+TGG + Chr4:34808851-34808870 MsG0480020134.01.T01:intron 25.0%
! AATAACAGTGTAGAACTTTA+GGG - Chr4:34808705-34808724 None:intergenic 25.0%
! AATTCCTAGATCTTCAAAAT+TGG - Chr4:34807599-34807618 None:intergenic 25.0%
! ATTAATTAATTGTGTAGTGC+TGG + Chr4:34807268-34807287 MsG0480020134.01.T01:intron 25.0%
! CACAAAAAACTTGAACATAA+GGG - Chr4:34808805-34808824 None:intergenic 25.0%
! GAATACTTGAATTCCATTTA+GGG - Chr4:34808618-34808637 None:intergenic 25.0%
! GACACTTGATTTAAAAAGAT+AGG - Chr4:34809246-34809265 None:intergenic 25.0%
! GGTTGTTGTGAAAATATATT+AGG - Chr4:34810175-34810194 None:intergenic 25.0%
! GTCAAGTATATAAATGTTTC+TGG - Chr4:34807430-34807449 None:intergenic 25.0%
! TACATGAAATATATCAGAAG+GGG + Chr4:34809288-34809307 MsG0480020134.01.T01:intron 25.0%
! TAGAATAGAAGATGAACAAA+AGG + Chr4:34807923-34807942 MsG0480020134.01.T01:intron 25.0%
! TCAATAATAAGGATCTTTAC+AGG + Chr4:34809588-34809607 MsG0480020134.01.T01:CDS 25.0%
! TGAATACTTGAATTCCATTT+AGG - Chr4:34808619-34808638 None:intergenic 25.0%
! TTGTATCTCACAACATAATA+CGG - Chr4:34809488-34809507 None:intergenic 25.0%
!! ATCTCATTCTTTGACTTAAT+TGG - Chr4:34807053-34807072 None:intergenic 25.0%
!! GCTTCATTGATAATTAAAGA+TGG + Chr4:34807309-34807328 MsG0480020134.01.T01:intron 25.0%
!! TTTTCTTCATAACATGTTTC+TGG - Chr4:34807384-34807403 None:intergenic 25.0%
!!! ACAACCAACTACTATTTTTA+GGG - Chr4:34808858-34808877 None:intergenic 25.0%
!!! TTATTGTTTTTTTTCTTGCC+AGG - Chr4:34809743-34809762 None:intergenic 25.0%
!!! TTTTTTGTTGTGACCAATTT+GGG + Chr4:34808279-34808298 MsG0480020134.01.T01:intron 25.0%
!!! TTTTTTTGTTGTGACCAATT+TGG + Chr4:34808278-34808297 MsG0480020134.01.T01:intron 25.0%
AAGCATATGAAACTGGATAT+AGG - Chr4:34808950-34808969 None:intergenic 30.0%
AATAAGGATCTTTACAGGAA+AGG + Chr4:34809593-34809612 MsG0480020134.01.T01:CDS 30.0%
ACAAAAGGAAATCATTGTGA+AGG + Chr4:34807938-34807957 MsG0480020134.01.T01:intron 30.0%
ATGCTTCATTGTCAATTATC+TGG + Chr4:34807227-34807246 MsG0480020134.01.T01:intron 30.0%
ATGGAAACCCAAAACAATAA+CGG + Chr4:34806576-34806595 MsG0480020134.01.T01:CDS 30.0%
ATTGAATTTGCAGCAAAGTT+AGG - Chr4:34809956-34809975 None:intergenic 30.0%
ATTTCATCAACTAAACCTAG+TGG - Chr4:34809446-34809465 None:intergenic 30.0%
CAAAAGGAAATCATTGTGAA+GGG + Chr4:34807939-34807958 MsG0480020134.01.T01:intron 30.0%
CATAATCACACAACTTCTAA+AGG + Chr4:34808409-34808428 MsG0480020134.01.T01:intron 30.0%
CATGGTTACAAACATGTATA+TGG + Chr4:34807515-34807534 MsG0480020134.01.T01:intron 30.0%
CCACAAAAAACTTGAACATA+AGG - Chr4:34808806-34808825 None:intergenic 30.0%
CTACTCATCTAATAACAGAT+GGG - Chr4:34807906-34807925 None:intergenic 30.0%
GACAAGGTTCAATCAAATAA+AGG - Chr4:34808769-34808788 None:intergenic 30.0%
GATATAGGAATGAGAAAGTT+TGG - Chr4:34808935-34808954 None:intergenic 30.0%
GCAACTTAATCTTCTAGATT+AGG + Chr4:34808365-34808384 MsG0480020134.01.T01:intron 30.0%
GCATCTAAATCTTCAAGATT+GGG - Chr4:34808831-34808850 None:intergenic 30.0%
GTATACGCAATTAAGCAATA+GGG - Chr4:34808663-34808682 None:intergenic 30.0%
TAAGTCAAAGAATGAGATTC+AGG + Chr4:34807055-34807074 MsG0480020134.01.T01:CDS 30.0%
TAATATGACATGGCATTTGA+AGG - Chr4:34810040-34810059 None:intergenic 30.0%
TAATATGCTACATCTCACAA+TGG + Chr4:34809001-34809020 MsG0480020134.01.T01:intron 30.0%
TCTACTCATCTAATAACAGA+TGG - Chr4:34807907-34807926 None:intergenic 30.0%
TGAACATGTGCTCAATAATA+AGG + Chr4:34809577-34809596 MsG0480020134.01.T01:CDS 30.0%
TGCATCTAAATCTTCAAGAT+TGG - Chr4:34808832-34808851 None:intergenic 30.0%
TGTATACGCAATTAAGCAAT+AGG - Chr4:34808664-34808683 None:intergenic 30.0%
TGTATCTCACAACATAATAC+GGG - Chr4:34809487-34809506 None:intergenic 30.0%
TGTTACAAAGCATATGAAAC+TGG - Chr4:34808957-34808976 None:intergenic 30.0%
TTCAAAGCAACATGTCAAAT+AGG - Chr4:34807624-34807643 None:intergenic 30.0%
! ATGCTTCATTGATGATAATC+TGG + Chr4:34807349-34807368 MsG0480020134.01.T01:intron 30.0%
! GTTTTGTGGATAATATGACA+TGG - Chr4:34810050-34810069 None:intergenic 30.0%
! TGCTTCATTGATGATAATCT+GGG + Chr4:34807350-34807369 MsG0480020134.01.T01:intron 30.0%
! TGGTTGATTCTAAGAATAAC+TGG - Chr4:34809316-34809335 None:intergenic 30.0%
! TTTTCTTTCTCCAGTTGATT+GGG + Chr4:34809215-34809234 MsG0480020134.01.T01:intron 30.0%
! TTTTTCTTTCTCCAGTTGAT+TGG + Chr4:34809214-34809233 MsG0480020134.01.T01:intron 30.0%
!! CACAACCAACTACTATTTTT+AGG - Chr4:34808859-34808878 None:intergenic 30.0%
!! GGTTTAGTTGATGAAATCTT+TGG + Chr4:34809449-34809468 MsG0480020134.01.T01:CDS 30.0%
!! TATTTGACATGTTGCTTTGA+AGG + Chr4:34807623-34807642 MsG0480020134.01.T01:intron 30.0%
!! TGATTGCATAGAAAAGTACT+TGG + Chr4:34807131-34807150 MsG0480020134.01.T01:intron 30.0%
!!! CCTTATGTTCAAGTTTTTTG+TGG + Chr4:34808803-34808822 MsG0480020134.01.T01:intron 30.0%
AAAAGCTTAGCAACAACAAC+GGG + Chr4:34806652-34806671 MsG0480020134.01.T01:CDS 35.0%
AAAGTGTGTTACGATGCATA+TGG + Chr4:34808224-34808243 MsG0480020134.01.T01:intron 35.0%
AAGCATGAACCTCTTAATGA+GGG + Chr4:34809389-34809408 MsG0480020134.01.T01:CDS 35.0%
AAGTTAGGACCTGCATTTAA+AGG - Chr4:34809941-34809960 None:intergenic 35.0%
AATGAGAAAGTTTGGTTGTG+AGG - Chr4:34808927-34808946 None:intergenic 35.0%
AATTCCTATTGAGAAATCCG+TGG + Chr4:34806746-34806765 MsG0480020134.01.T01:CDS 35.0%
ACTTTGCTGCAAATTCAATG+TGG + Chr4:34809957-34809976 MsG0480020134.01.T01:CDS 35.0%
AGTCTGTCAAAGAAGAAAGT+TGG - Chr4:34809336-34809355 None:intergenic 35.0%
ATGATGAGAAGATGGTTAGT+TGG + Chr4:34806982-34807001 MsG0480020134.01.T01:CDS 35.0%
ATGCTGAAGATGAAGAAGAA+GGG + Chr4:34806949-34806968 MsG0480020134.01.T01:CDS 35.0%
ATTGCAGCAAATGAACTCAA+AGG + Chr4:34808020-34808039 MsG0480020134.01.T01:intron 35.0%
CCATTTCAACCTTTAAATGC+AGG + Chr4:34809929-34809948 MsG0480020134.01.T01:CDS 35.0%
CCTGCATTTAAAGGTTGAAA+TGG - Chr4:34809932-34809951 None:intergenic 35.0%
CGCAAAAAATGACAAAGAGA+GGG + Chr4:34809702-34809721 MsG0480020134.01.T01:CDS 35.0%
CTACAACTGTAGAAGCAATT+AGG + Chr4:34808456-34808475 MsG0480020134.01.T01:intron 35.0%
CTCACAATGGTCTGTTAAAA+AGG + Chr4:34809014-34809033 MsG0480020134.01.T01:intron 35.0%
GAAAAGCTTAGCAACAACAA+CGG + Chr4:34806651-34806670 MsG0480020134.01.T01:CDS 35.0%
GATGATGAAGATGTTGTAGT+AGG + Chr4:34807026-34807045 MsG0480020134.01.T01:CDS 35.0%
GCAAAAAATGACAAAGAGAG+GGG + Chr4:34809703-34809722 MsG0480020134.01.T01:CDS 35.0%
GCATTTGAAGGAAATGCATT+TGG - Chr4:34810028-34810047 None:intergenic 35.0%
GGTTACAAACATGTATATGG+TGG + Chr4:34807518-34807537 MsG0480020134.01.T01:intron 35.0%
TGGAAACCCAAAACAATAAC+GGG + Chr4:34806577-34806596 MsG0480020134.01.T01:CDS 35.0%
TGGTTGTGACATTCAATCAT+CGG - Chr4:34808327-34808346 None:intergenic 35.0%
TTTCTTCTTTGACAGACTCT+CGG + Chr4:34809338-34809357 MsG0480020134.01.T01:intron 35.0%
TTTGAAGGAAATGCATTTGG+AGG - Chr4:34810025-34810044 None:intergenic 35.0%
! AATGAGGATAAAGATGATGG+AGG + Chr4:34806816-34806835 MsG0480020134.01.T01:CDS 35.0%
! ACATAATACGGGTTTTTGAC+CGG - Chr4:34809476-34809495 None:intergenic 35.0%
! ACTTCTAAAGGTGTAACTTG+AGG + Chr4:34808421-34808440 MsG0480020134.01.T01:intron 35.0%
! ATTCTTTTTGTGCGCAAGAT+CGG + Chr4:34808978-34808997 MsG0480020134.01.T01:intron 35.0%
! CTTCTAAAGGTGTAACTTGA+GGG + Chr4:34808422-34808441 MsG0480020134.01.T01:intron 35.0%
! GATAAGTGATGATGAGAAGA+TGG + Chr4:34806974-34806993 MsG0480020134.01.T01:CDS 35.0%
! GCAGCACCATTTGTTAATAA+TGG + Chr4:34809854-34809873 MsG0480020134.01.T01:CDS 35.0%
! GGAAACTATTCTCCTTTTTC+AGG + Chr4:34809875-34809894 MsG0480020134.01.T01:CDS 35.0%
! GTTTTCAGATGATGAGAAAG+AGG + Chr4:34809664-34809683 MsG0480020134.01.T01:CDS 35.0%
! TGAGAAAGTTGTGTGTTTTG+TGG - Chr4:34810064-34810083 None:intergenic 35.0%
! TTCTGAAAATGATGTTCCTG+CGG + Chr4:34809508-34809527 MsG0480020134.01.T01:CDS 35.0%
!! AGTTGATGAAATCTTTGGAC+CGG + Chr4:34809454-34809473 MsG0480020134.01.T01:CDS 35.0%
!! CAAACATGTATATGGTGGAT+TGG + Chr4:34807523-34807542 MsG0480020134.01.T01:intron 35.0%
!! GAGTAACGGATAATCAACAT+TGG - Chr4:34808741-34808760 None:intergenic 35.0%
!! GGATTCATTTGCTGTTGAAA+TGG - Chr4:34810109-34810128 None:intergenic 35.0%
!! TGAGCCAATTTTGAAGATCT+AGG + Chr4:34807592-34807611 MsG0480020134.01.T01:intron 35.0%
!! TTGCATAGAAAAGTACTTGG+TGG + Chr4:34807134-34807153 MsG0480020134.01.T01:intron 35.0%
!! TTGTTGTTGCTAAGCTTTTC+AGG - Chr4:34806651-34806670 None:intergenic 35.0%
!!! AAGGGCAAGATTTTGAAACT+TGG + Chr4:34807957-34807976 MsG0480020134.01.T01:intron 35.0%
!!! AGGGCAAGATTTTGAAACTT+GGG + Chr4:34807958-34807977 MsG0480020134.01.T01:intron 35.0%
!!! GTTTTGGGTTTCCATTGTTA+AGG - Chr4:34806571-34806590 None:intergenic 35.0%
!!! TATTCTCCTTTTTCAGGCAT+TGG + Chr4:34809881-34809900 MsG0480020134.01.T01:CDS 35.0%
AACCAGGATGAAATTGAGAG+GGG - Chr4:34810363-34810382 None:intergenic 40.0%
AACTCAAAGGAAGGTTCATG+TGG + Chr4:34808033-34808052 MsG0480020134.01.T01:intron 40.0%
AAGTTTGGTTGTGAGGATGT+AGG - Chr4:34808920-34808939 None:intergenic 40.0%
ACACCATAAAATGCTACCTG+TGG + Chr4:34807850-34807869 MsG0480020134.01.T01:CDS 40.0%
ACTCAAAGGAAGGTTCATGT+GGG + Chr4:34808034-34808053 MsG0480020134.01.T01:intron 40.0%
AGAACAGAACCCTCATTAAG+AGG - Chr4:34809401-34809420 None:intergenic 40.0%
AGCACATGTTCAGCAAATTC+TGG - Chr4:34809569-34809588 None:intergenic 40.0%
AGGTTGAAATGGTGAAACTG+TGG - Chr4:34809921-34809940 None:intergenic 40.0%
AGTTGAGGTTAATGGGAATG+AGG + Chr4:34806800-34806819 MsG0480020134.01.T01:CDS 40.0%
ATAGGGTTGAAGTGATCATG+CGG - Chr4:34808646-34808665 None:intergenic 40.0%
ATCTGTTGGAAGGATTGTTG+TGG - Chr4:34810235-34810254 None:intergenic 40.0%
ATCTTTCAAACGCAGCAACA+GGG + Chr4:34810268-34810287 MsG0480020134.01.T01:CDS 40.0%
ATGAGAAAGAGGCTGAATAC+AGG + Chr4:34809675-34809694 MsG0480020134.01.T01:CDS 40.0%
ATTCAACTACCAGTCGAAGA+GGG + Chr4:34808881-34808900 MsG0480020134.01.T01:intron 40.0%
ATTCAATCATCGGTGGAAGA+GGG - Chr4:34808317-34808336 None:intergenic 40.0%
ATTTCCCAACTATGATGCCT+GGG + Chr4:34810143-34810162 MsG0480020134.01.T01:CDS 40.0%
CAAAAGACATTGTAGAGCAC+TGG - Chr4:34809181-34809200 None:intergenic 40.0%
CAACTAAACCTAGTGGTTTG+CGG - Chr4:34809439-34809458 None:intergenic 40.0%
CAATTTCATCCTGGTTCATC+AGG + Chr4:34810367-34810386 MsG0480020134.01.T01:CDS 40.0%
CACCATAAAATGCTACCTGT+GGG + Chr4:34807851-34807870 MsG0480020134.01.T01:CDS 40.0%
CAGCAAATGAACTCAAAGGA+AGG + Chr4:34808024-34808043 MsG0480020134.01.T01:intron 40.0%
CATTAACCTCAACTGAAGGA+GGG - Chr4:34806794-34806813 None:intergenic 40.0%
CCATTTAGGGAAACAGCAAA+AGG - Chr4:34808605-34808624 None:intergenic 40.0%
CGCAAGTTAAGGTTTCTTTC+TGG - Chr4:34810319-34810338 None:intergenic 40.0%
CTATTGAGAAATCCGTGGAA+AGG + Chr4:34806751-34806770 MsG0480020134.01.T01:CDS 40.0%
CTCCTTCAGTTGAGGTTAAT+GGG + Chr4:34806793-34806812 MsG0480020134.01.T01:CDS 40.0%
CTGCAATGTCTTGTGGAATT+TGG + Chr4:34809149-34809168 MsG0480020134.01.T01:intron 40.0%
CTTTATGCAGCATAGCTAAG+AGG - Chr4:34808525-34808544 None:intergenic 40.0%
CTTTCCACGGATTTCTCAAT+AGG - Chr4:34806753-34806772 None:intergenic 40.0%
GAACCAGGATGAAATTGAGA+GGG - Chr4:34810364-34810383 None:intergenic 40.0%
GAAGCATGAACCTCTTAATG+AGG + Chr4:34809388-34809407 MsG0480020134.01.T01:CDS 40.0%
GATGCTGAAGATGAAGAAGA+AGG + Chr4:34806948-34806967 MsG0480020134.01.T01:CDS 40.0%
GCAAGATCAAGAAGAACAGT+TGG - Chr4:34808347-34808366 None:intergenic 40.0%
GCGCAAAAAATGACAAAGAG+AGG + Chr4:34809701-34809720 MsG0480020134.01.T01:CDS 40.0%
GGGAATGAGGATAAAGATGA+TGG + Chr4:34806813-34806832 MsG0480020134.01.T01:CDS 40.0%
GGGGTAAATGATCAAAATCC+TGG + Chr4:34809722-34809741 MsG0480020134.01.T01:CDS 40.0%
GTGTTACGATGCATATGGAA+GGG + Chr4:34808229-34808248 MsG0480020134.01.T01:intron 40.0%
GTTGTGACCAATTTGGGTAA+GGG + Chr4:34808285-34808304 MsG0480020134.01.T01:intron 40.0%
TATCTTTCAAACGCAGCAAC+AGG + Chr4:34810267-34810286 MsG0480020134.01.T01:CDS 40.0%
TCAGACCAAACTGCAGTTAA+GGG - Chr4:34807557-34807576 None:intergenic 40.0%
TCTGAAAATGATGTTCCTGC+GGG + Chr4:34809509-34809528 MsG0480020134.01.T01:CDS 40.0%
TGAAATGGAATTCCTGGAAC+AGG - Chr4:34810094-34810113 None:intergenic 40.0%
TGAACCAGGATGAAATTGAG+AGG - Chr4:34810365-34810384 None:intergenic 40.0%
TGAGGATGTAGGTAAGGATT+TGG - Chr4:34808909-34808928 None:intergenic 40.0%
TGCTGAAGATGAAGAAGAAG+GGG + Chr4:34806950-34806969 MsG0480020134.01.T01:CDS 40.0%
TGCTGTTGAAATGGAATTCC+TGG - Chr4:34810100-34810119 None:intergenic 40.0%
TGTGTTACGATGCATATGGA+AGG + Chr4:34808228-34808247 MsG0480020134.01.T01:intron 40.0%
TGTTGCTGCGTTTGAAAGAT+AGG - Chr4:34810268-34810287 None:intergenic 40.0%
TGTTGTGACCAATTTGGGTA+AGG + Chr4:34808284-34808303 MsG0480020134.01.T01:intron 40.0%
TTAATGAGGGTTCTGTTCTG+TGG + Chr4:34809402-34809421 MsG0480020134.01.T01:CDS 40.0%
TTCCCATTAACCTCAACTGA+AGG - Chr4:34806798-34806817 None:intergenic 40.0%
TTGTGACATTCAATCATCGG+TGG - Chr4:34808324-34808343 None:intergenic 40.0%
! ACAGGTAGCATTTTATGGTG+TGG - Chr4:34807851-34807870 None:intergenic 40.0%
! CAGTGCTCTACAATGTCTTT+TGG + Chr4:34809179-34809198 MsG0480020134.01.T01:intron 40.0%
! GGGTGCAATTTCTAAAGACA+AGG - Chr4:34808785-34808804 None:intergenic 40.0%
! TCATTTGCTGCAATGTCTTG+TGG - Chr4:34808014-34808033 None:intergenic 40.0%
! TGGGTTAGATTGTGAAGCAT+GGG + Chr4:34808053-34808072 MsG0480020134.01.T01:intron 40.0%
! TGGGTTAGATTGTGAGATGT+GGG - Chr4:34809102-34809121 None:intergenic 40.0%
! TTCCGACCCGTTATTGTTTT+GGG - Chr4:34806586-34806605 None:intergenic 40.0%
!! AACCCAAAACAATAACGGGT+CGG + Chr4:34806581-34806600 MsG0480020134.01.T01:CDS 40.0%
!! GATAAAGATGATGGAGGTGA+AGG + Chr4:34806822-34806841 MsG0480020134.01.T01:CDS 40.0%
!! TGTTGCTTTGAAGGTAGCTT+TGG + Chr4:34807632-34807651 MsG0480020134.01.T01:intron 40.0%
!! TTAAGGTTTCTTTCTGGCTG+CGG - Chr4:34810313-34810332 None:intergenic 40.0%
!!! CCTTTTGCTGTTTCCCTAAA+TGG + Chr4:34808602-34808621 MsG0480020134.01.T01:intron 40.0%
!!! TACTTGGTGGCTTTGAGTTT+TGG + Chr4:34807147-34807166 MsG0480020134.01.T01:intron 40.0%
AACCCCTCTCAATTTCATCC+TGG + Chr4:34810358-34810377 MsG0480020134.01.T01:CDS 45.0%
AAGGAAATGCATTTGGAGGC+AGG - Chr4:34810021-34810040 None:intergenic 45.0%
AATATATTAGGCTGCACCCC+AGG - Chr4:34810163-34810182 None:intergenic 45.0%
ACAACAACCCATGTATGCAC+CGG + Chr4:34810186-34810205 MsG0480020134.01.T01:CDS 45.0%
ACCTGTGGGAGTTGTTATGT+CGG + Chr4:34807865-34807884 MsG0480020134.01.T01:CDS 45.0%
ACGGTAGGAAACACATGATG+TGG - Chr4:34809818-34809837 None:intergenic 45.0%
AGGAAAGGCTATGATGCATC+TGG + Chr4:34809608-34809627 MsG0480020134.01.T01:CDS 45.0%
AGGAAATGCATTTGGAGGCA+GGG - Chr4:34810020-34810039 None:intergenic 45.0%
AGGGATCTGGAAGGGAATAT+AGG + Chr4:34808248-34808267 MsG0480020134.01.T01:intron 45.0%
ATTGCAGCGAATGAACCCAA+AGG - Chr4:34809136-34809155 None:intergenic 45.0%
CAGCAAATGAATCCCAGTCA+TGG + Chr4:34810115-34810134 MsG0480020134.01.T01:CDS 45.0%
CATATGGAAGGGATCTGGAA+GGG + Chr4:34808240-34808259 MsG0480020134.01.T01:intron 45.0%
CATTCAACTACCAGTCGAAG+AGG + Chr4:34808880-34808899 MsG0480020134.01.T01:intron 45.0%
CATTCAATCATCGGTGGAAG+AGG - Chr4:34808318-34808337 None:intergenic 45.0%
CATTTCCCAACTATGATGCC+TGG + Chr4:34810142-34810161 MsG0480020134.01.T01:CDS 45.0%
CCATTAACCTCAACTGAAGG+AGG - Chr4:34806795-34806814 None:intergenic 45.0%
CCTCCTTCAGTTGAGGTTAA+TGG + Chr4:34806792-34806811 MsG0480020134.01.T01:CDS 45.0%
CCTTGTCCAATGCCTGAAAA+AGG - Chr4:34809890-34809909 None:intergenic 45.0%
CGTATCCCTTAACTGCAGTT+TGG + Chr4:34807549-34807568 MsG0480020134.01.T01:intron 45.0%
CGTGGAAAGGATCACGTTAA+CGG + Chr4:34806764-34806783 MsG0480020134.01.T01:CDS 45.0%
CGTTAACGTGATCCTTTCCA+CGG - Chr4:34806766-34806785 None:intergenic 45.0%
CTGAAAATGATGTTCCTGCG+GGG + Chr4:34809510-34809529 MsG0480020134.01.T01:CDS 45.0%
GGAAGGATTGTTGTGGCATT+TGG - Chr4:34810228-34810247 None:intergenic 45.0%
GGAGGTAACACATGCTCTTT+CGG - Chr4:34809779-34809798 None:intergenic 45.0%
GGCTAAACCCTTACCCAAAT+TGG - Chr4:34808295-34808314 None:intergenic 45.0%
GGGAAATGAGTTCCATGACT+GGG - Chr4:34810130-34810149 None:intergenic 45.0%
GTCAGACCAAACTGCAGTTA+AGG - Chr4:34807558-34807577 None:intergenic 45.0%
GTGGAAAGGATCACGTTAAC+GGG + Chr4:34806765-34806784 MsG0480020134.01.T01:CDS 45.0%
TAGGACTAGGACGCAAGTTA+AGG - Chr4:34810330-34810349 None:intergenic 45.0%
TAGGTGGTTGCTGAATCTGT+TGG - Chr4:34810249-34810268 None:intergenic 45.0%
TCAAGTCATTGTGGAAGGAG+TGG + Chr4:34809364-34809383 MsG0480020134.01.T01:CDS 45.0%
TCATTCGCTGCAATGTCTTG+TGG + Chr4:34809142-34809161 MsG0480020134.01.T01:intron 45.0%
TCTCATCAGTTTCCTGTTCC+AGG + Chr4:34810079-34810098 MsG0480020134.01.T01:CDS 45.0%
TGCTGCGTTTGAAAGATAGG+TGG - Chr4:34810265-34810284 None:intergenic 45.0%
TGGGAAATGAGTTCCATGAC+TGG - Chr4:34810131-34810150 None:intergenic 45.0%
TGGTTGCTGAATCTGTTGGA+AGG - Chr4:34810245-34810264 None:intergenic 45.0%
TGGTTGTGAGGATGTAGGTA+AGG - Chr4:34808915-34808934 None:intergenic 45.0%
TGTAACTTGAGGGTGACAAG+AGG + Chr4:34808432-34808451 MsG0480020134.01.T01:intron 45.0%
TTCAACTACCAGTCGAAGAG+GGG + Chr4:34808882-34808901 MsG0480020134.01.T01:intron 45.0%
TTCAATCATCGGTGGAAGAG+GGG - Chr4:34808316-34808335 None:intergenic 45.0%
TTGCGTCCTAGTCCTATTTC+TGG + Chr4:34810334-34810353 MsG0480020134.01.T01:CDS 45.0%
TTTCCCAACTATGATGCCTG+GGG + Chr4:34810144-34810163 MsG0480020134.01.T01:CDS 45.0%
! ATAGGGTGTTCCCAATCAAC+TGG - Chr4:34809228-34809247 None:intergenic 45.0%
! CTCCCACAGGTAGCATTTTA+TGG - Chr4:34807856-34807875 None:intergenic 45.0%
! GAAGATGGTTAGTTGGAGTG+CGG + Chr4:34806989-34807008 MsG0480020134.01.T01:CDS 45.0%
! GTTCCGACCCGTTATTGTTT+TGG - Chr4:34806587-34806606 None:intergenic 45.0%
! TGCAGTTTGGTCTGACTTGA+GGG + Chr4:34807562-34807581 MsG0480020134.01.T01:intron 45.0%
!! AACACATGATGTGGTGCTAC+AGG - Chr4:34809809-34809828 None:intergenic 45.0%
!! ACCCGAAGTACCAAGCTTTT+CGG - Chr4:34806721-34806740 None:intergenic 45.0%
!! GAAGTGTTGAAGTGACCATG+CGG + Chr4:34808481-34808500 MsG0480020134.01.T01:intron 45.0%
!! GTGGGTTAGATTGTGAAGCA+TGG + Chr4:34808052-34808071 MsG0480020134.01.T01:intron 45.0%
!! GTGGGTTAGATTGTGAGATG+TGG - Chr4:34809103-34809122 None:intergenic 45.0%
!! TTAACAAATGGTGCTGCTGC+AGG - Chr4:34809851-34809870 None:intergenic 45.0%
!! TTGCTAAGCTTTTCAGGCTG+TGG - Chr4:34806645-34806664 None:intergenic 45.0%
!!! CCTTTTTCAGGCATTGGACA+AGG + Chr4:34809887-34809906 MsG0480020134.01.T01:CDS 45.0%
!!! TTTTCAGGCATTGGACAAGG+TGG + Chr4:34809890-34809909 MsG0480020134.01.T01:CDS 45.0%
AACAACCCATGTATGCACCG+GGG + Chr4:34810188-34810207 MsG0480020134.01.T01:CDS 50.0%
AATGCATTTGGAGGCAGGGT+AGG - Chr4:34810016-34810035 None:intergenic 50.0%
ACAAACCCCGGTGCATACAT+GGG - Chr4:34810196-34810215 None:intergenic 50.0%
ACCCAAAGGTAACGTTCGTG+TGG - Chr4:34809122-34809141 None:intergenic 50.0%
ACCCACACGAACGTTACCTT+TGG + Chr4:34809117-34809136 MsG0480020134.01.T01:intron 50.0%
ACCGACATAACAACTCCCAC+AGG - Chr4:34807869-34807888 None:intergenic 50.0%
ACCTGACCCGAACCTTGTTA+CGG + Chr4:34806605-34806624 MsG0480020134.01.T01:CDS 50.0%
ACTGAAAGCCGCAAACCACT+AGG + Chr4:34809428-34809447 MsG0480020134.01.T01:CDS 50.0%
AGACCAAAGTTGTTCCCCCT+TGG - Chr4:34809538-34809557 None:intergenic 50.0%
AGGGAGACCATCATTTCGTG+GGG + Chr4:34810396-34810415 MsG0480020134.01.T01:CDS 50.0%
ATGTATGCACCGGGGTTTGT+GGG + Chr4:34810196-34810215 MsG0480020134.01.T01:CDS 50.0%
CAACAACCCATGTATGCACC+GGG + Chr4:34810187-34810206 MsG0480020134.01.T01:CDS 50.0%
CCCAAAGGTAACGTTCGTGT+GGG - Chr4:34809121-34809140 None:intergenic 50.0%
CCCACACGAACGTTACCTTT+GGG + Chr4:34809118-34809137 MsG0480020134.01.T01:intron 50.0%
CGATGCATATGGAAGGGATC+TGG + Chr4:34808235-34808254 MsG0480020134.01.T01:intron 50.0%
CTGGTTCATCAGGTAGTCGA+GGG + Chr4:34810377-34810396 MsG0480020134.01.T01:CDS 50.0%
GAGGGAGACCATCATTTCGT+GGG + Chr4:34810395-34810414 MsG0480020134.01.T01:CDS 50.0%
GATCCAAGGGGGAACAACTT+TGG + Chr4:34809532-34809551 MsG0480020134.01.T01:CDS 50.0%
GCATATGGAAGGGATCTGGA+AGG + Chr4:34808239-34808258 MsG0480020134.01.T01:intron 50.0%
GCCGAAAAGCTTGGTACTTC+GGG + Chr4:34806717-34806736 MsG0480020134.01.T01:CDS 50.0%
GCTAAACACACATCCACTGG+AGG - Chr4:34807827-34807846 None:intergenic 50.0%
GGAGCTCAAGTCATTGTGGA+AGG + Chr4:34809359-34809378 MsG0480020134.01.T01:CDS 50.0%
GGCCGAAAAGCTTGGTACTT+CGG + Chr4:34806716-34806735 MsG0480020134.01.T01:CDS 50.0%
GGGTTGCCAGAAATAGGACT+AGG - Chr4:34810343-34810362 None:intergenic 50.0%
GGTGCTAAACACACATCCAC+TGG - Chr4:34807830-34807849 None:intergenic 50.0%
TAGATGTCTCCGCCGTAACA+AGG - Chr4:34806620-34806639 None:intergenic 50.0%
TCAACTACCAGTCGAAGAGG+GGG + Chr4:34808883-34808902 MsG0480020134.01.T01:intron 50.0%
TCAAGAACTCAACCTCCGCA+TGG - Chr4:34808499-34808518 None:intergenic 50.0%
TCTCGGAGCTCAAGTCATTG+TGG + Chr4:34809355-34809374 MsG0480020134.01.T01:CDS 50.0%
TGAGAGGGGTTGCCAGAAAT+AGG - Chr4:34810349-34810368 None:intergenic 50.0%
! ACTTGACCCGAACCCTTTTG+CGG + Chr4:34806680-34806699 MsG0480020134.01.T01:CDS 50.0%
! CTGCAGTTTGGTCTGACTTG+AGG + Chr4:34807561-34807580 MsG0480020134.01.T01:intron 50.0%
!! AGACATTGTAGAGCACTGGC+AGG - Chr4:34809177-34809196 None:intergenic 50.0%
!! GCTTTGAAGGTAGCTTTGGC+TGG + Chr4:34807636-34807655 MsG0480020134.01.T01:intron 50.0%
!! TGTGGTGCTACAGGTGCATT+AGG - Chr4:34809800-34809819 None:intergenic 50.0%
!!! TGGTTTTGACCCACAAACCC+CGG - Chr4:34810208-34810227 None:intergenic 50.0%
ACATCCACTGGAGGAACTGG+AGG - Chr4:34807818-34807837 None:intergenic 55.0%
AGACCATCATTTCGTGGGGC+CGG + Chr4:34810400-34810419 MsG0480020134.01.T01:CDS 55.0%
ATGTTCCTGCGGGGATCCAA+GGG + Chr4:34809519-34809538 MsG0480020134.01.T01:CDS 55.0%
CACAAACCCCGGTGCATACA+TGG - Chr4:34810197-34810216 None:intergenic 55.0%
CACACATCCACTGGAGGAAC+TGG - Chr4:34807821-34807840 None:intergenic 55.0%
CATGTATGCACCGGGGTTTG+TGG + Chr4:34810195-34810214 MsG0480020134.01.T01:CDS 55.0%
CCTCGACTACCTGATGAACC+AGG - Chr4:34810379-34810398 None:intergenic 55.0%
CCTGGTTCATCAGGTAGTCG+AGG + Chr4:34810376-34810395 MsG0480020134.01.T01:CDS 55.0%
CGAGGGAGACCATCATTTCG+TGG + Chr4:34810394-34810413 MsG0480020134.01.T01:CDS 55.0%
GCACCCCAGGCATCATAGTT+GGG - Chr4:34810150-34810169 None:intergenic 55.0%
GGGTTGAAGTGATCATGCGG+AGG - Chr4:34808643-34808662 None:intergenic 55.0%
GTCTCCGCCGTAACAAGGTT+CGG - Chr4:34806615-34806634 None:intergenic 55.0%
GTGTTGAAGTGACCATGCGG+AGG + Chr4:34808484-34808503 MsG0480020134.01.T01:intron 55.0%
GTTAGTTGGAGTGCGGCTGA+TGG + Chr4:34806996-34807015 MsG0480020134.01.T01:CDS 55.0%
TCGTCATCATCGTCGACGTC+TGG + Chr4:34806897-34806916 MsG0480020134.01.T01:CDS 55.0%
TCTCCGCCGTAACAAGGTTC+GGG - Chr4:34806614-34806633 None:intergenic 55.0%
TCTGGCTGCGGCAAATCAGT+GGG - Chr4:34810301-34810320 None:intergenic 55.0%
TGACCCGAACCTTGTTACGG+CGG + Chr4:34806608-34806627 MsG0480020134.01.T01:CDS 55.0%
TGCACCCCAGGCATCATAGT+TGG - Chr4:34810151-34810170 None:intergenic 55.0%
TTTGCCTCCAGTTCCTCCAG+TGG + Chr4:34807811-34807830 MsG0480020134.01.T01:CDS 55.0%
! GGTGCTACAGGTGCATTAGG+AGG - Chr4:34809797-34809816 None:intergenic 55.0%
! GTACCAAGCTTTTCGGCCAC+CGG - Chr4:34806714-34806733 None:intergenic 55.0%
! TTCTGGCTGCGGCAAATCAG+TGG - Chr4:34810302-34810321 None:intergenic 55.0%
ACTCCGCCGCAAAAGGGTTC+GGG - Chr4:34806689-34806708 None:intergenic 60.0%
AGGTTGCCACCCTCTCCTAC+CGG - Chr4:34810422-34810441 None:intergenic 60.0%
CATCATTTCGTGGGGCCGGT+AGG + Chr4:34810404-34810423 MsG0480020134.01.T01:CDS 60.0%
CTACCGGCCCCACGAAATGA+TGG - Chr4:34810406-34810425 None:intergenic 60.0%
GACTCCGCCGCAAAAGGGTT+CGG - Chr4:34806690-34806709 None:intergenic 60.0%
GATGTTCCTGCGGGGATCCA+AGG + Chr4:34809518-34809537 MsG0480020134.01.T01:CDS 60.0%
GATTTGGCCCCCTCTTCGAC+TGG - Chr4:34808893-34808912 None:intergenic 60.0%
GCCGTAACAAGGTTCGGGTC+AGG - Chr4:34806609-34806628 None:intergenic 60.0%
GGAGAGGGTGGCAACCTTCA+AGG + Chr4:34810425-34810444 MsG0480020134.01.T01:CDS 60.0%
GGGTGACCCTCCTTCAGTTG+AGG + Chr4:34806785-34806804 MsG0480020134.01.T01:CDS 60.0%
TCACCGGTGGCCGAAAAGCT+TGG + Chr4:34806708-34806727 MsG0480020134.01.T01:CDS 60.0%
TGCTGCAGGTGCGTTAGGGA+CGG - Chr4:34809837-34809856 None:intergenic 60.0%
TGTTCCTGCGGGGATCCAAG+GGG + Chr4:34809520-34809539 MsG0480020134.01.T01:CDS 60.0%
TTTGGAGGCAGGGTAGGCTG+TGG - Chr4:34810010-34810029 None:intergenic 60.0%
! GTGCTGCTGCAGGTGCGTTA+GGG - Chr4:34809841-34809860 None:intergenic 60.0%
! TGACCCGAACCCTTTTGCGG+CGG + Chr4:34806683-34806702 MsG0480020134.01.T01:CDS 60.0%
ACCGGTGACTCCGCCGCAAA+AGG - Chr4:34806696-34806715 None:intergenic 65.0%
AGGGTAGGCTGTGGCTGCTG+TGG - Chr4:34810001-34810020 None:intergenic 65.0%
CCGGTGACTCCGCCGCAAAA+GGG - Chr4:34806695-34806714 None:intergenic 65.0%
GCAGGTGCGTTAGGGACGGT+AGG - Chr4:34809833-34809852 None:intergenic 65.0%
GGCTGCGGCAAATCAGTGGG+TGG - Chr4:34810298-34810317 None:intergenic 65.0%
GTTCCTGCGGGGATCCAAGG+GGG + Chr4:34809521-34809540 MsG0480020134.01.T01:CDS 65.0%
TTCGTGGGGCCGGTAGGAGA+GGG + Chr4:34810410-34810429 MsG0480020134.01.T01:CDS 65.0%
TTTCGTGGGGCCGGTAGGAG+AGG + Chr4:34810409-34810428 MsG0480020134.01.T01:CDS 65.0%
! CCCTTTTGCGGCGGAGTCAC+CGG + Chr4:34806692-34806711 MsG0480020134.01.T01:CDS 65.0%
! TTTTGCGGCGGAGTCACCGG+TGG + Chr4:34806695-34806714 MsG0480020134.01.T01:CDS 65.0%
!! GGTGCTGCTGCAGGTGCGTT+AGG - Chr4:34809842-34809861 None:intergenic 65.0%
GTTCCCCCTTGGATCCCCGC+AGG - Chr4:34809527-34809546 None:intergenic 70.0%
GTGGGGCCGGTAGGAGAGGG+TGG + Chr4:34810413-34810432 MsG0480020134.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 34806568 34810450 34806568 ID=MsG0480020134.01;Name=MsG0480020134.01
Chr4 mRNA 34806568 34810450 34806568 ID=MsG0480020134.01.T01;Parent=MsG0480020134.01;Name=MsG0480020134.01.T01;_AED=0.34;_eAED=0.34;_QI=8|1|0.66|1|1|1|3|0|558
Chr4 exon 34809353 34810450 34809353 ID=MsG0480020134.01.T01:exon:4246;Parent=MsG0480020134.01.T01
Chr4 exon 34807809 34807886 34807809 ID=MsG0480020134.01.T01:exon:4245;Parent=MsG0480020134.01.T01
Chr4 exon 34806568 34807076 34806568 ID=MsG0480020134.01.T01:exon:4244;Parent=MsG0480020134.01.T01
Chr4 five_prime_UTR 34806568 34806575 34806568 ID=MsG0480020134.01.T01:five_prime_utr;Parent=MsG0480020134.01.T01
Chr4 CDS 34806576 34807076 34806576 ID=MsG0480020134.01.T01:cds;Parent=MsG0480020134.01.T01
Chr4 CDS 34807809 34807886 34807809 ID=MsG0480020134.01.T01:cds;Parent=MsG0480020134.01.T01
Chr4 CDS 34809353 34810450 34809353 ID=MsG0480020134.01.T01:cds;Parent=MsG0480020134.01.T01
Gene Sequence

>MsG0480020134.01.T01

ATGGAAACCCAAAACAATAACGGGTCGGAACCTGACCCGAACCTTGTTACGGCGGAGACATCTAAGCCACAGCCTGAAAAGCTTAGCAACAACAACGGGTCAGAACTTGACCCGAACCCTTTTGCGGCGGAGTCACCGGTGGCCGAAAAGCTTGGTACTTCGGGTGATGAAATTCCTATTGAGAAATCCGTGGAAAGGATCACGTTAACGGGTGACCCTCCTTCAGTTGAGGTTAATGGGAATGAGGATAAAGATGATGGAGGTGAAGGTGAAAGTGAAAGTGAAAGTTCAGAGTCTGAATCTGAGAGTTCTACTTCTTCATCGTCATCATCGTCGACGTCTGGTTCTGACAGTGATGAAGACGACGACGATGATGCTGAAGATGAAGAAGAAGGGGAGATAAGTGATGATGAGAAGATGGTTAGTTGGAGTGCGGCTGATGGTGATCTTGATGATGAAGATGTTGTAGTAGGACCAATTAAGTCAAAGAATGAGATTCAGAATTTGCCTCCAGTTCCTCCAGTGGATGTGTGTTTAGCACCACACCATAAAATGCTACCTGTGGGAGTTGTTATGTCGACTCTCGGAGCTCAAGTCATTGTGGAAGGAGTGGAGAAGCATGAACCTCTTAATGAGGGTTCTGTTCTGTGGCTGACTGAAAGCCGCAAACCACTAGGTTTAGTTGATGAAATCTTTGGACCGGTCAAAAACCCGTATTATGTTGTGAGATACAATTCTGAAAATGATGTTCCTGCGGGGATCCAAGGGGGAACAACTTTGGTCTCATGTGTTCCAGAATTTGCTGAACATGTGCTCAATAATAAGGATCTTTACAGGAAAGGCTATGATGCATCTGGTGCGTATGATGAAGAGTTGTTTGATGAAGTAGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAGGAAAGCGCAAAAAATGACAAAGAGAGGGGTAAATGATCAAAATCCTGGCAAGAAAAAAAACAATAAAAAGAAATTTTCACCGAAAGAGCATGTGTTACCTCCTAATGCACCTGTAGCACCACATCATGTGTTTCCTACCGTCCCTAACGCACCTGCAGCAGCACCATTTGTTAATAATGGAAACTATTCTCCTTTTTCAGGCATTGGACAAGGTGGAACTACCACAGTTTCACCATTTCAACCTTTAAATGCAGGTCCTAACTTTGCTGCAAATTCAATGTGGACAAATCAGACAACATTTCCACAGCAGCCACAGCCTACCCTGCCTCCAAATGCATTTCCTTCAAATGCCATGTCATATTATCCACAAAACACACAACTTTCTCATCAGTTTCCTGTTCCAGGAATTCCATTTCAACAGCAAATGAATCCCAGTCATGGAACTCATTTCCCAACTATGATGCCTGGGGTGCAGCCTAATATATTTTCACAACAACCCATGTATGCACCGGGGTTTGTGGGTCAAAACCAAATGCCACAACAATCCTTCCAACAGATTCAGCAACCACCTATCTTTCAAACGCAGCAACAGGGTTTTCCACCCACTGATTTGCCGCAGCCAGAAAGAAACCTTAACTTGCGTCCTAGTCCTATTTCTGGCAACCCCTCTCAATTTCATCCTGGTTCATCAGGTAGTCGAGGGAGACCATCATTTCGTGGGGCCGGTAGGAGAGGGTGGCAACCTTCAAGGTGA
Protein sequence

>MsG0480020134.01.T01

METQNNNGSEPDPNLVTAETSKPQPEKLSNNNGSELDPNPFAAESPVAEKLGTSGDEIPIEKSVERITLTGDPPSVEVNGNEDKDDGGEGESESESSESESESSTSSSSSSSTSGSDSDEDDDDDAEDEEEGEISDDEKMVSWSAADGDLDDEDVVVGPIKSKNEIQNLPPVPPVDVCLAPHHKMLPVGVVMSTLGAQVIVEGVEKHEPLNEGSVLWLTESRKPLGLVDEIFGPVKNPYYVVRYNSENDVPAGIQGGTTLVSCVPEFAEHVLNNKDLYRKGYDASGAYDEELFDEVEFSDDEKEAEYRKAQKMTKRGVNDQNPGKKKNNKKKFSPKEHVLPPNAPVAPHHVFPTVPNAPAAAPFVNNGNYSPFSGIGQGGTTTVSPFQPLNAGPNFAANSMWTNQTTFPQQPQPTLPPNAFPSNAMSYYPQNTQLSHQFPVPGIPFQQQMNPSHGTHFPTMMPGVQPNIFSQQPMYAPGFVGQNQMPQQSFQQIQQPPIFQTQQQGFPPTDLPQPERNLNLRPSPISGNPSQFHPGSSGSRGRPSFRGAGRRGWQPSR*