AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015027.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015027.01.T01 MTR_3g467620 98.148 270 4 1 1 270 1 269 0.0 540
MsG0380015027.01.T01 MTR_5g075530 83.942 274 39 3 1 269 49 322 4.86e-147 414
MsG0380015027.01.T01 MTR_5g075530 77.457 173 34 3 1 168 49 221 6.66e-68 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015027.01.T01 AT5G20920 75.000 268 62 5 1 265 1 266 2.35e-131 373
MsG0380015027.01.T01 AT5G20920 75.000 268 62 5 1 265 1 266 2.35e-131 373
MsG0380015027.01.T01 AT5G20920 75.000 268 61 6 1 265 1 265 5.19e-130 369
MsG0380015027.01.T01 AT3G07920 70.395 152 37 2 118 265 17 164 1.03e-70 215
MsG0380015027.01.T01 AT5G01940 57.042 142 56 3 114 254 72 209 6.36e-49 161
MsG0380015027.01.T01 AT5G01940 57.042 142 56 3 114 254 104 241 9.26e-49 162
MsG0380015027.01.T01 AT5G01940 53.846 156 63 4 114 262 72 225 1.01e-46 156

Find 74 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTTGCTTGCGGAAC+TGG 0.130326 3:-64091671 MsG0380015027.01.T01:CDS
AAAATTCCTTCGAAGTTCTT+TGG 0.281091 3:+64091592 None:intergenic
CGTCGGTCTCCAGCAAGTTC+TGG 0.286919 3:+64092120 None:intergenic
AGTCGGTTAAATAAGATAAC+TGG 0.326850 3:-64090577 MsG0380015027.01.T01:three_prime_UTR
TCCTTTGACAGTATTGTGTC+AGG 0.386643 3:+64091437 None:intergenic
CCTTGCAACCTCGTTACCCT+TGG 0.397283 3:-64092758 MsG0380015027.01.T01:CDS
GAGAATAATCCAGAACTTGC+TGG 0.427102 3:-64092129 MsG0380015027.01.T01:CDS
TTAATTTACATGTGAAAACT+AGG 0.443687 3:-64090712 MsG0380015027.01.T01:three_prime_UTR
GATGAATATGTCATTTGCCT+TGG 0.446437 3:-64091470 MsG0380015027.01.T01:CDS
GGGTTTGACAGTACTTTAGC+TGG 0.446946 3:-64093124 MsG0380015027.01.T01:CDS
GCAACAAAACCAGCCTTGAT+AGG 0.448200 3:+64090795 None:intergenic
GTTCTTTCTCCGGTGTGAAA+AGG 0.449900 3:-64091405 MsG0380015027.01.T01:intron
CATGTAGGTCAAGCAAAAGT+TGG 0.450106 3:+64090673 None:intergenic
AGAGCGGAGCGAGAGAAATC+TGG 0.450896 3:+64094528 None:intergenic
AAGAAAGCCATGACATGATC+TGG 0.453989 3:+64091685 None:intergenic
GGTACAAGTGGTTCTCTAGA+TGG 0.461160 3:-64091649 MsG0380015027.01.T01:CDS
CTTGCAACCTCGTTACCCTT+GGG 0.463993 3:-64092757 MsG0380015027.01.T01:CDS
GTCAAGCAAAAGTTGGGAAA+TGG 0.465103 3:+64090680 None:intergenic
CGTGTTGGCCGTAGGACTGC+GGG 0.465591 3:-64090771 MsG0380015027.01.T01:CDS
TCTAGATGGACAGCAGAGAT+TGG 0.466810 3:-64091635 MsG0380015027.01.T01:CDS
TATTGCTTGCAGTGTGGATC+AGG 0.472397 3:-64090831 MsG0380015027.01.T01:intron
GCTTTCTTGCTTGCGGAACT+GGG 0.492020 3:-64091670 MsG0380015027.01.T01:CDS
AAGATCAGTTGCACCTATCA+AGG 0.492968 3:-64090808 MsG0380015027.01.T01:CDS
TGTCATGGCTTTCTTGCTTG+CGG 0.497308 3:-64091677 MsG0380015027.01.T01:CDS
AGAACCGTTTGTTCTTTCTC+CGG 0.497985 3:-64091415 MsG0380015027.01.T01:CDS
GTGCCCTCACGAAGCACTTG+TGG 0.500600 3:+64092078 None:intergenic
CACACCGGAGAAAGAACAAA+CGG 0.501705 3:+64091411 None:intergenic
TAATTTACATGTGAAAACTA+GGG 0.505394 3:-64090711 MsG0380015027.01.T01:three_prime_UTR
TTGTTGCTCGTGTTGGCCGT+AGG 0.510944 3:-64090779 MsG0380015027.01.T01:CDS
TCAGTTGCACCTATCAAGGC+TGG 0.525265 3:-64090804 MsG0380015027.01.T01:CDS
ATGTAGGTCAAGCAAAAGTT+GGG 0.525415 3:+64090674 None:intergenic
ATGTCCCTCCCGCAGTCCTA+CGG 0.525965 3:+64090763 None:intergenic
GATCATGCTGAAGAGAATGA+AGG 0.536109 3:-64092792 MsG0380015027.01.T01:CDS
AGAGATTGGTTGTGAAGGGA+AGG 0.537518 3:-64091621 MsG0380015027.01.T01:CDS
ATCATGCTGAAGAGAATGAA+GGG 0.539765 3:-64092791 MsG0380015027.01.T01:CDS
TTACATGTTGATCTTTGAGT+CGG 0.541633 3:-64090594 MsG0380015027.01.T01:three_prime_UTR
TCCTGACACAATACTGTCAA+AGG 0.542246 3:-64091438 MsG0380015027.01.T01:CDS
CAGCAGAGATTGGTTGTGAA+GGG 0.544525 3:-64091625 MsG0380015027.01.T01:CDS
TCATCAAGATCTACCACTGC+GGG 0.548138 3:+64093330 None:intergenic
ACCGACGGAGAACTGTTATG+AGG 0.549889 3:-64092104 MsG0380015027.01.T01:CDS
TGAAGCACAGATTGATGTGA+AGG 0.549994 3:-64093646 MsG0380015027.01.T01:CDS
CAATAAACTCAGCTGAAGTA+CGG 0.559028 3:+64090643 None:intergenic
CCCTCACGAAGCACTTGTGG+AGG 0.572134 3:+64092081 None:intergenic
ACAGATTGATGTGAAGGAAG+AGG 0.574813 3:-64093640 MsG0380015027.01.T01:CDS
GAGAAGACAGAAAATCTGTC+GGG 0.576064 3:-64093285 MsG0380015027.01.T01:intron
TCGTGTTGGCCGTAGGACTG+CGG 0.579876 3:-64090772 MsG0380015027.01.T01:CDS
TAACCGATCGAAGGAGAGAG+CGG 0.584152 3:+64094512 None:intergenic
GCCTCCACAAGTGCTTCGTG+AGG 0.584535 3:-64092082 MsG0380015027.01.T01:CDS
ACAGCAGAGATTGGTTGTGA+AGG 0.584946 3:-64091626 MsG0380015027.01.T01:CDS
TGCTTAGGTTTCAGTAACCA+TGG 0.585520 3:-64093673 MsG0380015027.01.T01:intron
CTTGCGGAACTGGGTACAAG+TGG 0.589169 3:-64091661 MsG0380015027.01.T01:CDS
CACGATCACTTCCTTCCCAA+GGG 0.589285 3:+64092742 None:intergenic
GCCTCATAACAGTTCTCCGT+CGG 0.590654 3:+64092103 None:intergenic
CAACCTCGTTACCCTTGGGA+AGG 0.592495 3:-64092753 MsG0380015027.01.T01:CDS
GCTCCGCTCTCTCCTTCGAT+CGG 0.592497 3:-64094515 MsG0380015027.01.T01:five_prime_UTR
TTTGCACCAAAGAACTTCGA+AGG 0.593663 3:-64091598 MsG0380015027.01.T01:CDS
TCACGATCACTTCCTTCCCA+AGG 0.596987 3:+64092741 None:intergenic
AATCTGTGCTTCATCTGCCA+TGG 0.597125 3:+64093656 None:intergenic
CCAAGGGTAACGAGGTTGCA+AGG 0.598454 3:+64092758 None:intergenic
AATTTACATGTGAAAACTAG+GGG 0.598512 3:-64090710 MsG0380015027.01.T01:three_prime_UTR
TGAGAAGACAGAAAATCTGT+CGG 0.602216 3:-64093286 MsG0380015027.01.T01:CDS
TGATGATTCAGTAGACAAGT+TGG 0.613548 3:-64093310 MsG0380015027.01.T01:CDS
CTTCCTTCCCAAGGGTAACG+AGG 0.616919 3:+64092750 None:intergenic
CCTCCACAAGTGCTTCGTGA+GGG 0.624335 3:-64092081 MsG0380015027.01.T01:CDS
CAGAACTTGCTGGAGACCGA+CGG 0.631347 3:-64092119 MsG0380015027.01.T01:CDS
AAGTACGGTATACAACATGT+AGG 0.642394 3:+64090658 None:intergenic
TCATGCTGAAGAGAATGAAG+GGG 0.642946 3:-64092790 MsG0380015027.01.T01:CDS
GTTGGCCGTAGGACTGCGGG+AGG 0.652534 3:-64090768 MsG0380015027.01.T01:CDS
TCGGCAGCCAGATCATGTCA+TGG 0.653346 3:-64091692 MsG0380015027.01.T01:CDS
CATACGAGTTAACCGATCGA+AGG 0.671598 3:+64094503 None:intergenic
TGATCGTGATTATCAATACG+AGG 0.718816 3:-64092727 MsG0380015027.01.T01:CDS
ATCATCAAGATCTACCACTG+CGG 0.727185 3:+64093329 None:intergenic
TTGGCCGTAGGACTGCGGGA+GGG 0.729821 3:-64090767 MsG0380015027.01.T01:CDS
TCGTGATTATCAATACGAGG+AGG 0.739399 3:-64092724 MsG0380015027.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATTTATATTATTTA+CGG - Chr3:64090980-64090999 MsG0380015027.01.T01:intron 0.0%
!! AAAATATCATTGAAATTGTT+CGG + Chr3:64094146-64094165 None:intergenic 15.0%
!! CATGTAAATTAAAAAAAGAA+AGG + Chr3:64094396-64094415 None:intergenic 15.0%
!! CTAAAAAGAACAAAATATAT+AGG + Chr3:64093627-64093646 None:intergenic 15.0%
!! TAAATCAATAATCAAAATCA+AGG + Chr3:64091011-64091030 None:intergenic 15.0%
!! TATAAGAGAAACTATTAAAA+AGG + Chr3:64093938-64093957 None:intergenic 15.0%
!! TTTATAAGCTTAAAAATCAT+GGG + Chr3:64090787-64090806 None:intergenic 15.0%
!!! ACAAAAAAAAAATCGATTTT+AGG + Chr3:64090658-64090677 None:intergenic 15.0%
!!! AGTATCTTATTTTATTATCT+AGG - Chr3:64091232-64091251 MsG0380015027.01.T01:intron 15.0%
!!! ATATTTTGGAATTTTTAACA+TGG - Chr3:64092636-64092655 MsG0380015027.01.T01:intron 15.0%
!!! CAAAAAAAAAATCGATTTTA+GGG + Chr3:64090657-64090676 None:intergenic 15.0%
!!! GTTTTTGCTAATTAATTAAT+CGG - Chr3:64090823-64090842 MsG0380015027.01.T01:intron 15.0%
!!! TATTTTATGCTATTAAGTTT+TGG - Chr3:64091886-64091905 MsG0380015027.01.T01:intron 15.0%
!!! TTTTTGCTAATTAATTAATC+GGG - Chr3:64090824-64090843 MsG0380015027.01.T01:intron 15.0%
!!! TTTTTTTCTCAATTGTTATT+GGG - Chr3:64090888-64090907 MsG0380015027.01.T01:intron 15.0%
!!! TTTTTTTTCTCAATTGTTAT+TGG - Chr3:64090887-64090906 MsG0380015027.01.T01:intron 15.0%
!! AATTCTTAAGGGAAATTAAT+TGG - Chr3:64092271-64092290 MsG0380015027.01.T01:intron 20.0%
!! AGACATAAACAAAATGATAA+TGG + Chr3:64093380-64093399 None:intergenic 20.0%
!! CTTTATAAGCTTAAAAATCA+TGG + Chr3:64090788-64090807 None:intergenic 20.0%
!! GTAATTTATTATTCAGTTGT+TGG - Chr3:64093115-64093134 MsG0380015027.01.T01:CDS 20.0%
!! GTAGTTATTTGAGAAAATTA+GGG + Chr3:64093252-64093271 None:intergenic 20.0%
!! GTTATCAATTTCTTAATTTC+AGG + Chr3:64093816-64093835 None:intergenic 20.0%
!! TAATTTACATGTGAAAACTA+GGG - Chr3:64094405-64094424 MsG0380015027.01.T01:intron 20.0%
!! TACAATTTAAGGAAATAAAG+CGG - Chr3:64094203-64094222 MsG0380015027.01.T01:intron 20.0%
!! TGTAGTTATTTGAGAAAATT+AGG + Chr3:64093253-64093272 None:intergenic 20.0%
!! TTAATTTACATGTGAAAACT+AGG - Chr3:64094404-64094423 MsG0380015027.01.T01:intron 20.0%
!! TTAATTTCCCTTAAGAATTA+AGG + Chr3:64092270-64092289 None:intergenic 20.0%
!! TTATAAGCTTAAAAATCATG+GGG + Chr3:64090786-64090805 None:intergenic 20.0%
!!! AACTGTTTTTGTGAATTTTA+TGG - Chr3:64093067-64093086 MsG0380015027.01.T01:intron 20.0%
!!! ATATTTTTATTGTTGATTGC+AGG - Chr3:64092154-64092173 MsG0380015027.01.T01:CDS 20.0%
!!! ATCTTTTACTTTATGATGAT+GGG - Chr3:64094243-64094262 MsG0380015027.01.T01:intron 20.0%
!!! ATTATTGATTTAGCTTTGTT+TGG - Chr3:64091019-64091038 MsG0380015027.01.T01:intron 20.0%
!!! CTTTATTTCCTTAAATTGTA+GGG + Chr3:64094203-64094222 None:intergenic 20.0%
!!! GATTTGAAATATTCAACTTA+AGG + Chr3:64094034-64094053 None:intergenic 20.0%
!!! GATTTTAATGCAATATAGAA+AGG + Chr3:64093344-64093363 None:intergenic 20.0%
!!! TAATTAATCGGGTTTTTTTA+GGG - Chr3:64090835-64090854 MsG0380015027.01.T01:intron 20.0%
!!! TATCTTTTACTTTATGATGA+TGG - Chr3:64094242-64094261 MsG0380015027.01.T01:intron 20.0%
!!! TTAATTAATCGGGTTTTTTT+AGG - Chr3:64090834-64090853 MsG0380015027.01.T01:intron 20.0%
!!! TTTATGCTACTTTTCATATT+TGG - Chr3:64092537-64092556 MsG0380015027.01.T01:intron 20.0%
!!! TTTTTCTTCTTCTTTTTAGT+AGG + Chr3:64091762-64091781 None:intergenic 20.0%
! AATTTACATGTGAAAACTAG+GGG - Chr3:64094406-64094425 MsG0380015027.01.T01:intron 25.0%
! ACAATTTAAGGAAATAAAGC+GGG - Chr3:64094204-64094223 MsG0380015027.01.T01:intron 25.0%
! ATATAAACACATATTTGAGG+AGG + Chr3:64092689-64092708 None:intergenic 25.0%
! ATATATCATGAAGCTATTGT+TGG + Chr3:64092795-64092814 None:intergenic 25.0%
! ATATCATGCCTTAATTCTTA+AGG - Chr3:64092259-64092278 MsG0380015027.01.T01:intron 25.0%
! ATTCAGTTGAGAAACATTTA+TGG + Chr3:64092511-64092530 None:intergenic 25.0%
! CACAGATAGTAATAAACTAA+GGG + Chr3:64091135-64091154 None:intergenic 25.0%
! CATAACATAAACACTTATCA+TGG + Chr3:64091084-64091103 None:intergenic 25.0%
! TATAAATTGTGTTTGAGAGT+TGG + Chr3:64092242-64092261 None:intergenic 25.0%
! TATAATATTTGTCGAAGATG+TGG + Chr3:64091395-64091414 None:intergenic 25.0%
! TATCATGCCTTAATTCTTAA+GGG - Chr3:64092260-64092279 MsG0380015027.01.T01:intron 25.0%
! TCCATATAAACACATATTTG+AGG + Chr3:64092692-64092711 None:intergenic 25.0%
! TCCTCAAATATGTGTTTATA+TGG - Chr3:64092688-64092707 MsG0380015027.01.T01:intron 25.0%
!! AGTTTATTGCAGTACATTTT+TGG - Chr3:64094487-64094506 MsG0380015027.01.T01:intron 25.0%
!! CAGTCTCTAAAAACATATTA+CGG + Chr3:64094169-64094188 None:intergenic 25.0%
!! CTTTCATAAGCAATTTTTCA+TGG + Chr3:64094065-64094084 None:intergenic 25.0%
!! TACTTTTCATATTTGGATAG+TGG - Chr3:64092544-64092563 MsG0380015027.01.T01:intron 25.0%
!!! AATTTGAAACATTTTCCTAC+AGG + Chr3:64094000-64094019 None:intergenic 25.0%
!!! AGGTAGTATTTGTTTAGTTT+TGG - Chr3:64092888-64092907 MsG0380015027.01.T01:intron 25.0%
!!! ATTTTGGTAGTTTTATGCAT+TGG - Chr3:64091524-64091543 MsG0380015027.01.T01:intron 25.0%
!!! GCTTTATTTCCTTAAATTGT+AGG + Chr3:64094204-64094223 None:intergenic 25.0%
!!! GTCTTTAATGTTATTTTCTG+AGG - Chr3:64091908-64091927 MsG0380015027.01.T01:intron 25.0%
!!! TAAGTTTGCACAATTGATTT+TGG - Chr3:64091508-64091527 MsG0380015027.01.T01:intron 25.0%
!!! TGTTTTTTGATAGAACACTA+TGG + Chr3:64093886-64093905 None:intergenic 25.0%
!!! TTCAAATCTCTTTGATTTGT+TGG - Chr3:64091665-64091684 MsG0380015027.01.T01:CDS 25.0%
!!! TTCTTTTTAGTAGGATCAAA+TGG + Chr3:64091753-64091772 None:intergenic 25.0%
!!! TTTCTAGTTTTGTTTTGCTT+AGG - Chr3:64091428-64091447 MsG0380015027.01.T01:CDS 25.0%
AAAATTCCTTCGAAGTTCTT+TGG + Chr3:64093527-64093546 None:intergenic 30.0%
AAACGAAACAAACACCAAAT+TGG + Chr3:64090711-64090730 None:intergenic 30.0%
AACGAAACAAACACCAAATT+GGG + Chr3:64090710-64090729 None:intergenic 30.0%
AATCTGCAATTAACAAACTC+AGG + Chr3:64091727-64091746 None:intergenic 30.0%
AATTAGAATTGTTCAAGGAC+AGG + Chr3:64091948-64091967 None:intergenic 30.0%
ACCAAATTGGGTAATCAAAA+AGG + Chr3:64090698-64090717 None:intergenic 30.0%
AGGCTAATTAGAATTGTTCA+AGG + Chr3:64091953-64091972 None:intergenic 30.0%
AGTCGGTTAAATAAGATAAC+TGG - Chr3:64094539-64094558 MsG0380015027.01.T01:five_prime_UTR 30.0%
ATATATCAGTAAGTATCTCG+TGG - Chr3:64093553-64093572 MsG0380015027.01.T01:intron 30.0%
CAAATTGGGTAATCAAAAAG+GGG + Chr3:64090696-64090715 None:intergenic 30.0%
CAATAATTCAAATGACCTAC+AGG + Chr3:64092040-64092059 None:intergenic 30.0%
CAATTTAAGGAAATAAAGCG+GGG - Chr3:64094205-64094224 MsG0380015027.01.T01:intron 30.0%
CACAGCCTATAAAACTAATA+TGG + Chr3:64092597-64092616 None:intergenic 30.0%
CCAAATTGGGTAATCAAAAA+GGG + Chr3:64090697-64090716 None:intergenic 30.0%
GCACAGATAGTAATAAACTA+AGG + Chr3:64091136-64091155 None:intergenic 30.0%
GCTACATGTATAATACATGT+AGG - Chr3:64093137-64093156 MsG0380015027.01.T01:intron 30.0%
GTAGGTCATTTGAATTATTG+TGG - Chr3:64092040-64092059 MsG0380015027.01.T01:CDS 30.0%
GTTTCTCTTATAGTCTTTCT+AGG - Chr3:64093946-64093965 MsG0380015027.01.T01:intron 30.0%
TAACATCACCCTACAATTTA+AGG - Chr3:64094192-64094211 MsG0380015027.01.T01:intron 30.0%
TGAGAAACATTTATGGAACT+AGG + Chr3:64092504-64092523 None:intergenic 30.0%
TTACATGTTGATCTTTGAGT+CGG - Chr3:64094522-64094541 MsG0380015027.01.T01:five_prime_UTR 30.0%
TTGAGTCGTTGTTGTATTAT+TGG - Chr3:64092759-64092778 MsG0380015027.01.T01:CDS 30.0%
! AATCAACATACGTTTTGCAA+AGG + Chr3:64093094-64093113 None:intergenic 30.0%
! AATTTTACACCGCATTTCAA+GGG + Chr3:64092458-64092477 None:intergenic 30.0%
! ATAGGTCAATTTTTACTCGA+AGG + Chr3:64093609-64093628 None:intergenic 30.0%
! CTTCATTCTTTCTATGCTTT+TGG - Chr3:64091163-64091182 MsG0380015027.01.T01:intron 30.0%
! GCAATTTTTCATGGATCAAT+TGG + Chr3:64094056-64094075 None:intergenic 30.0%
! GCATTTTCTTCTGTTATCAT+AGG - Chr3:64092868-64092887 MsG0380015027.01.T01:intron 30.0%
! GTGACTGGTTATAACTTATA+AGG - Chr3:64091567-64091586 MsG0380015027.01.T01:intron 30.0%
! TAATTTTACACCGCATTTCA+AGG + Chr3:64092459-64092478 None:intergenic 30.0%
! TAGTGACTTGTATTCTTAGT+TGG - Chr3:64091639-64091658 MsG0380015027.01.T01:CDS 30.0%
!! AGCAAAGAATCTCTTTGTTT+TGG - Chr3:64090935-64090954 MsG0380015027.01.T01:intron 30.0%
!! AGTTTTATAGGCTGTGTTTT+GGG - Chr3:64092601-64092620 MsG0380015027.01.T01:intron 30.0%
!! TACATGTAGGCATGTTTTTA+TGG - Chr3:64093150-64093169 MsG0380015027.01.T01:intron 30.0%
!! TGATAATGGAAGACAAAAGT+AGG + Chr3:64093366-64093385 None:intergenic 30.0%
!! TTAGTCTTTTGTATCAAGTC+AGG - Chr3:64091306-64091325 MsG0380015027.01.T01:intron 30.0%
!!! ATCTCTTTGTTTTGGCTATA+AGG - Chr3:64090943-64090962 MsG0380015027.01.T01:intron 30.0%
!!! TAGTTTTATAGGCTGTGTTT+TGG - Chr3:64092600-64092619 MsG0380015027.01.T01:intron 30.0%
!!! TCTCTTTGTTTTGGCTATAA+GGG - Chr3:64090944-64090963 MsG0380015027.01.T01:intron 30.0%
!!! TGTCGCCATATTAGTTTTAT+AGG - Chr3:64092589-64092608 MsG0380015027.01.T01:intron 30.0%
AACATTTATGGAACTAGGTG+AGG + Chr3:64092499-64092518 None:intergenic 35.0%
AAGTACGGTATACAACATGT+AGG + Chr3:64094461-64094480 None:intergenic 35.0%
AATTTCAGGAACCAATTCAC+CGG + Chr3:64093802-64093821 None:intergenic 35.0%
ACATTTATGGAACTAGGTGA+GGG + Chr3:64092498-64092517 None:intergenic 35.0%
ATCATGCTGAAGAGAATGAA+GGG - Chr3:64092325-64092344 MsG0380015027.01.T01:intron 35.0%
ATGTAGGTCAAGCAAAAGTT+GGG + Chr3:64094445-64094464 None:intergenic 35.0%
ATGTATATCTCTGCAACCTA+CGG - Chr3:64093763-64093782 MsG0380015027.01.T01:intron 35.0%
CAATAAACTCAGCTGAAGTA+CGG + Chr3:64094476-64094495 None:intergenic 35.0%
CAATTGTGCAAACTTACATC+AGG + Chr3:64091504-64091523 None:intergenic 35.0%
CAGTCACATGAAACATGTAT+AGG + Chr3:64091554-64091573 None:intergenic 35.0%
CGTTGTTGTATTATTGGTGT+GGG - Chr3:64092765-64092784 MsG0380015027.01.T01:CDS 35.0%
CTATACATGTTTCATGTGAC+TGG - Chr3:64091552-64091571 MsG0380015027.01.T01:intron 35.0%
GATATACATAGAGAGGGAAT+AGG + Chr3:64093752-64093771 None:intergenic 35.0%
GTGTCTTGATTTCTCTATTC+AGG - Chr3:64091275-64091294 MsG0380015027.01.T01:intron 35.0%
TAACAAACTCAGGCATTAGA+AGG + Chr3:64091717-64091736 None:intergenic 35.0%
TAATAAACTAAGGGCCTGTT+TGG + Chr3:64091126-64091145 None:intergenic 35.0%
TATATGGATTCTGCTCTCAA+GGG - Chr3:64092704-64092723 MsG0380015027.01.T01:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - Chr3:64091109-64091128 MsG0380015027.01.T01:intron 35.0%
TCGTTGTTGTATTATTGGTG+TGG - Chr3:64092764-64092783 MsG0380015027.01.T01:CDS 35.0%
TCTCCAACTCATTAATCTCT+AGG - Chr3:64093911-64093930 MsG0380015027.01.T01:intron 35.0%
TGAGAAGACAGAAAATCTGT+CGG - Chr3:64091830-64091849 MsG0380015027.01.T01:intron 35.0%
TGATCGTGATTATCAATACG+AGG - Chr3:64092389-64092408 MsG0380015027.01.T01:intron 35.0%
TGATGATTCAGTAGACAAGT+TGG - Chr3:64091806-64091825 MsG0380015027.01.T01:intron 35.0%
TGATGCGAAAAATGACGATT+TGG - Chr3:64092208-64092227 MsG0380015027.01.T01:intron 35.0%
TGCAGAGATATACATAGAGA+GGG + Chr3:64093758-64093777 None:intergenic 35.0%
TTATATGGATTCTGCTCTCA+AGG - Chr3:64092703-64092722 MsG0380015027.01.T01:intron 35.0%
TTCCTACAGGATATATGAGT+TGG + Chr3:64093987-64094006 None:intergenic 35.0%
TTGCAGAGATATACATAGAG+AGG + Chr3:64093759-64093778 None:intergenic 35.0%
! AAACCTAGACGCATTTTCTT+AGG - Chr3:64093176-64093195 MsG0380015027.01.T01:intron 35.0%
! AACAACATGAAAAGCACATC+AGG - Chr3:64093292-64093311 MsG0380015027.01.T01:CDS 35.0%
! ATGTTTTTCTGTGCAGCTTT+TGG - Chr3:64092941-64092960 MsG0380015027.01.T01:CDS 35.0%
! CGCATTTTCTTAGGTGATTT+TGG - Chr3:64093185-64093204 MsG0380015027.01.T01:intron 35.0%
! GAAATTTCACCTTTTCACAC+CGG + Chr3:64093723-64093742 None:intergenic 35.0%
! GATGAATATGTCATTTGCCT+TGG - Chr3:64093646-64093665 MsG0380015027.01.T01:CDS 35.0%
! GATGTGGAATTTTGGATGAA+AGG + Chr3:64091379-64091398 None:intergenic 35.0%
! TATTTGGATAGTGGTTCTTG+TGG - Chr3:64092553-64092572 MsG0380015027.01.T01:intron 35.0%
! TGTTTTTCTGTGCAGCTTTT+GGG - Chr3:64092942-64092961 MsG0380015027.01.T01:CDS 35.0%
! TTGTCGAAGATGTGGAATTT+TGG + Chr3:64091387-64091406 None:intergenic 35.0%
!! CCCTTTTTGATTACCCAATT+TGG - Chr3:64090694-64090713 MsG0380015027.01.T01:three_prime_UTR 35.0%
!! CTTTTAACTGCAGTTTCTGA+GGG - Chr3:64091971-64091990 MsG0380015027.01.T01:intron 35.0%
!! TCTCTACTTTTGCTCTTTGT+TGG - Chr3:64092833-64092852 MsG0380015027.01.T01:intron 35.0%
!! TTTTAACTGCAGTTTCTGAG+GGG - Chr3:64091972-64091991 MsG0380015027.01.T01:intron 35.0%
AAGAAAGCCATGACATGATC+TGG + Chr3:64093434-64093453 None:intergenic 40.0%
AAGAAGAAGAAGAAGCCTGT+AGG - Chr3:64092022-64092041 MsG0380015027.01.T01:intron 40.0%
AAGATCAGTTGCACCTATCA+AGG - Chr3:64094308-64094327 MsG0380015027.01.T01:intron 40.0%
ACAGATTGATGTGAAGGAAG+AGG - Chr3:64091476-64091495 MsG0380015027.01.T01:intron 40.0%
AGAACCGTTTGTTCTTTCTC+CGG - Chr3:64093701-64093720 MsG0380015027.01.T01:intron 40.0%
ATCATCAAGATCTACCACTG+CGG + Chr3:64091790-64091809 None:intergenic 40.0%
ATTCTCTTCAGCATGATCTG+AGG + Chr3:64092322-64092341 None:intergenic 40.0%
CATGTAGGTCAAGCAAAAGT+TGG + Chr3:64094446-64094465 None:intergenic 40.0%
CCTCAGAAACTGCAGTTAAA+AGG + Chr3:64091973-64091992 None:intergenic 40.0%
CTCCAACTCATATATCCTGT+AGG - Chr3:64093982-64094001 MsG0380015027.01.T01:intron 40.0%
GAGAAGACAGAAAATCTGTC+GGG - Chr3:64091831-64091850 MsG0380015027.01.T01:intron 40.0%
GAGAATAATCCAGAACTTGC+TGG - Chr3:64092987-64093006 MsG0380015027.01.T01:intron 40.0%
GATCATGCTGAAGAGAATGA+AGG - Chr3:64092324-64092343 MsG0380015027.01.T01:intron 40.0%
GGACCTAGAGATTAATGAGT+TGG + Chr3:64093917-64093936 None:intergenic 40.0%
GTCAAGCAAAAGTTGGGAAA+TGG + Chr3:64094439-64094458 None:intergenic 40.0%
TCACCTAAGAAAATGCGTCT+AGG + Chr3:64093182-64093201 None:intergenic 40.0%
TCATGCTGAAGAGAATGAAG+GGG - Chr3:64092326-64092345 MsG0380015027.01.T01:intron 40.0%
TCCTGACACAATACTGTCAA+AGG - Chr3:64093678-64093697 MsG0380015027.01.T01:intron 40.0%
TCCTTTGACAGTATTGTGTC+AGG + Chr3:64093682-64093701 None:intergenic 40.0%
TCGTGATTATCAATACGAGG+AGG - Chr3:64092392-64092411 MsG0380015027.01.T01:intron 40.0%
TGAAGCACAGATTGATGTGA+AGG - Chr3:64091470-64091489 MsG0380015027.01.T01:CDS 40.0%
TGCTTAGGTTTCAGTAACCA+TGG - Chr3:64091443-64091462 MsG0380015027.01.T01:CDS 40.0%
TTTGCACCAAAGAACTTCGA+AGG - Chr3:64093518-64093537 MsG0380015027.01.T01:intron 40.0%
! GCGAAAAATGACGATTTGGA+TGG - Chr3:64092212-64092231 MsG0380015027.01.T01:intron 40.0%
! GTCTTGCTACCTTGTCTTTT+AGG - Chr3:64093396-64093415 MsG0380015027.01.T01:intron 40.0%
! TATATGAGTTGGAGACCTAG+AGG + Chr3:64093976-64093995 None:intergenic 40.0%
!! CCTTTTAACTGCAGTTTCTG+AGG - Chr3:64091970-64091989 MsG0380015027.01.T01:intron 40.0%
!! TTATAGGCTGTGTTTTGGGT+GGG - Chr3:64092605-64092624 MsG0380015027.01.T01:intron 40.0%
!! TTTATAGGCTGTGTTTTGGG+TGG - Chr3:64092604-64092623 MsG0380015027.01.T01:intron 40.0%
!!! CCTTGTCTTTTAGGATGCAT+CGG - Chr3:64093405-64093424 MsG0380015027.01.T01:intron 40.0%
AACTAAGGGCCTGTTTGGAT+TGG + Chr3:64091121-64091140 None:intergenic 45.0%
AATCTGTGCTTCATCTGCCA+TGG + Chr3:64091463-64091482 None:intergenic 45.0%
CACACCGGAGAAAGAACAAA+CGG + Chr3:64093708-64093727 None:intergenic 45.0%
CATACGAGTTAACCGATCGA+AGG + Chr3:64090616-64090635 None:intergenic 45.0%
CCGATGCATCCTAAAAGACA+AGG + Chr3:64093408-64093427 None:intergenic 45.0%
GCAACAAAACCAGCCTTGAT+AGG + Chr3:64094324-64094343 None:intergenic 45.0%
GGGTTTGACAGTACTTTAGC+TGG - Chr3:64091992-64092011 MsG0380015027.01.T01:intron 45.0%
GGTACAAGTGGTTCTCTAGA+TGG - Chr3:64093467-64093486 MsG0380015027.01.T01:intron 45.0%
GTAGTGTATTGCTTGCAGTG+TGG - Chr3:64094279-64094298 MsG0380015027.01.T01:intron 45.0%
GTCTTTCTAGGTCTTCCTCT+AGG - Chr3:64093958-64093977 MsG0380015027.01.T01:intron 45.0%
GTTCTTTCTCCGGTGTGAAA+AGG - Chr3:64093711-64093730 MsG0380015027.01.T01:intron 45.0%
TATGCCTCTCCCTTGAAATG+CGG - Chr3:64092446-64092465 MsG0380015027.01.T01:intron 45.0%
TATTGCTTGCAGTGTGGATC+AGG - Chr3:64094285-64094304 MsG0380015027.01.T01:intron 45.0%
TCATCAAGATCTACCACTGC+GGG + Chr3:64091789-64091808 None:intergenic 45.0%
TCTAGATGGACAGCAGAGAT+TGG - Chr3:64093481-64093500 MsG0380015027.01.T01:intron 45.0%
TGTCATGGCTTTCTTGCTTG+CGG - Chr3:64093439-64093458 MsG0380015027.01.T01:intron 45.0%
! AAGCCTTATCCCATTGAGTG+GGG - Chr3:64093837-64093856 MsG0380015027.01.T01:intron 45.0%
! ACAGCAGAGATTGGTTGTGA+AGG - Chr3:64093490-64093509 MsG0380015027.01.T01:intron 45.0%
! AGAGATTGGTTGTGAAGGGA+AGG - Chr3:64093495-64093514 MsG0380015027.01.T01:intron 45.0%
! CAAGCCTTATCCCATTGAGT+GGG - Chr3:64093836-64093855 MsG0380015027.01.T01:intron 45.0%
! CAGCAGAGATTGGTTGTGAA+GGG - Chr3:64093491-64093510 MsG0380015027.01.T01:intron 45.0%
! GGTGGGGTCTTTGCATATTT+TGG - Chr3:64092622-64092641 MsG0380015027.01.T01:intron 45.0%
! TGTCAGGACTTTTGCATCCA+AGG + Chr3:64093666-64093685 None:intergenic 45.0%
!! TATAGGCTGTGTTTTGGGTG+GGG - Chr3:64092606-64092625 MsG0380015027.01.T01:intron 45.0%
ACCGACGGAGAACTGTTATG+AGG - Chr3:64093012-64093031 MsG0380015027.01.T01:intron 50.0%
ATGTAGCCAACCCCACTCAA+TGG + Chr3:64093850-64093869 None:intergenic 50.0%
CAACCCCACTCAATGGGATA+AGG + Chr3:64093843-64093862 None:intergenic 50.0%
CACGATCACTTCCTTCCCAA+GGG + Chr3:64092377-64092396 None:intergenic 50.0%
CCACTCAATGGGATAAGGCT+TGG + Chr3:64093838-64093857 None:intergenic 50.0%
CTACGGAAATTGTAGAGCGC+CGG - Chr3:64093780-64093799 MsG0380015027.01.T01:intron 50.0%
CTTATCCCATTGAGTGGGGT+TGG - Chr3:64093841-64093860 MsG0380015027.01.T01:intron 50.0%
CTTGCAACCTCGTTACCCTT+GGG - Chr3:64092359-64092378 MsG0380015027.01.T01:intron 50.0%
GAAGAAAAAGAAGCCCGCAG+TGG - Chr3:64091773-64091792 MsG0380015027.01.T01:intron 50.0%
GCCTCATAACAGTTCTCCGT+CGG + Chr3:64093016-64093035 None:intergenic 50.0%
GCTTTCTTGCTTGCGGAACT+GGG - Chr3:64093446-64093465 MsG0380015027.01.T01:intron 50.0%
TAACCGATCGAAGGAGAGAG+CGG + Chr3:64090607-64090626 None:intergenic 50.0%
TACACCGCATTTCAAGGGAG+AGG + Chr3:64092453-64092472 None:intergenic 50.0%
TCACGATCACTTCCTTCCCA+AGG + Chr3:64092378-64092397 None:intergenic 50.0%
TCAGTTGCACCTATCAAGGC+TGG - Chr3:64094312-64094331 MsG0380015027.01.T01:intron 50.0%
TGTAGCCAACCCCACTCAAT+GGG + Chr3:64093849-64093868 None:intergenic 50.0%
! CCAAGCCTTATCCCATTGAG+TGG - Chr3:64093835-64093854 MsG0380015027.01.T01:intron 50.0%
! TTCTGTGCAGCTTTTGGGCA+GGG - Chr3:64092947-64092966 MsG0380015027.01.T01:intron 50.0%
! TTTCTGTGCAGCTTTTGGGC+AGG - Chr3:64092946-64092965 MsG0380015027.01.T01:intron 50.0%
!! ATTGTAGAGCGCCGGTGAAT+TGG - Chr3:64093788-64093807 MsG0380015027.01.T01:intron 50.0%
!!! GCTGGTTTTGTTGCTCGTGT+TGG - Chr3:64094330-64094349 MsG0380015027.01.T01:intron 50.0%
AGAGCGGAGCGAGAGAAATC+TGG + Chr3:64090591-64090610 None:intergenic 55.0%
CAACCTCGTTACCCTTGGGA+AGG - Chr3:64092363-64092382 MsG0380015027.01.T01:intron 55.0%
CCAAGGGTAACGAGGTTGCA+AGG + Chr3:64092361-64092380 None:intergenic 55.0%
CCTCCACAAGTGCTTCGTGA+GGG - Chr3:64093035-64093054 MsG0380015027.01.T01:intron 55.0%
CCTTGCAACCTCGTTACCCT+TGG - Chr3:64092358-64092377 MsG0380015027.01.T01:intron 55.0%
CGGCGCTCTACAATTTCCGT+AGG + Chr3:64093782-64093801 None:intergenic 55.0%
CTTCCTTCCCAAGGGTAACG+AGG + Chr3:64092369-64092388 None:intergenic 55.0%
CTTGCGGAACTGGGTACAAG+TGG - Chr3:64093455-64093474 MsG0380015027.01.T01:intron 55.0%
GGCTTTCTTGCTTGCGGAAC+TGG - Chr3:64093445-64093464 MsG0380015027.01.T01:intron 55.0%
TCGGCAGCCAGATCATGTCA+TGG - Chr3:64093424-64093443 MsG0380015027.01.T01:intron 55.0%
! TTGTTGCTCGTGTTGGCCGT+AGG - Chr3:64094337-64094356 MsG0380015027.01.T01:intron 55.0%
!! CAGAACTTGCTGGAGACCGA+CGG - Chr3:64092997-64093016 MsG0380015027.01.T01:intron 55.0%
ATGTCCCTCCCGCAGTCCTA+CGG + Chr3:64094356-64094375 None:intergenic 60.0%
CGTCGGTCTCCAGCAAGTTC+TGG + Chr3:64092999-64093018 None:intergenic 60.0%
GCCTCCACAAGTGCTTCGTG+AGG - Chr3:64093034-64093053 MsG0380015027.01.T01:intron 60.0%
GCTCCGCTCTCTCCTTCGAT+CGG - Chr3:64090601-64090620 MsG0380015027.01.T01:three_prime_UTR 60.0%
! CCCTCACGAAGCACTTGTGG+AGG + Chr3:64093038-64093057 None:intergenic 60.0%
! GTGCCCTCACGAAGCACTTG+TGG + Chr3:64093041-64093060 None:intergenic 60.0%
! TCGTGTTGGCCGTAGGACTG+CGG - Chr3:64094344-64094363 MsG0380015027.01.T01:intron 60.0%
TTGGCCGTAGGACTGCGGGA+GGG - Chr3:64094349-64094368 MsG0380015027.01.T01:intron 65.0%
! CGTGTTGGCCGTAGGACTGC+GGG - Chr3:64094345-64094364 MsG0380015027.01.T01:intron 65.0%
GTTGGCCGTAGGACTGCGGG+AGG - Chr3:64094348-64094367 MsG0380015027.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 64090562 64094576 64090562 ID=MsG0380015027.01;Name=MsG0380015027.01
Chr3 mRNA 64090562 64094576 64090562 ID=MsG0380015027.01.T01;Parent=MsG0380015027.01;Name=MsG0380015027.01.T01;_AED=0.49;_eAED=0.49;_QI=81|1|1|1|0.88|0.8|10|199|270
Chr3 exon 64090562 64090841 64090562 ID=MsG0380015027.01.T01:exon:29929;Parent=MsG0380015027.01.T01
Chr3 exon 64091406 64091491 64091406 ID=MsG0380015027.01.T01:exon:29928;Parent=MsG0380015027.01.T01
Chr3 exon 64091578 64091720 64091578 ID=MsG0380015027.01.T01:exon:29927;Parent=MsG0380015027.01.T01
Chr3 exon 64092036 64092181 64092036 ID=MsG0380015027.01.T01:exon:29926;Parent=MsG0380015027.01.T01
Chr3 exon 64092725 64092813 64092725 ID=MsG0380015027.01.T01:exon:29925;Parent=MsG0380015027.01.T01
Chr3 exon 64092905 64092962 64092905 ID=MsG0380015027.01.T01:exon:29924;Parent=MsG0380015027.01.T01
Chr3 exon 64093099 64093154 64093099 ID=MsG0380015027.01.T01:exon:29923;Parent=MsG0380015027.01.T01
Chr3 exon 64093286 64093394 64093286 ID=MsG0380015027.01.T01:exon:29922;Parent=MsG0380015027.01.T01
Chr3 exon 64093632 64093688 64093632 ID=MsG0380015027.01.T01:exon:29921;Parent=MsG0380015027.01.T01
Chr3 exon 64094508 64094576 64094508 ID=MsG0380015027.01.T01:exon:29920;Parent=MsG0380015027.01.T01
Chr3 five_prime_UTR 64094508 64094576 64094508 ID=MsG0380015027.01.T01:five_prime_utr;Parent=MsG0380015027.01.T01
Chr3 five_prime_UTR 64093677 64093688 64093677 ID=MsG0380015027.01.T01:five_prime_utr;Parent=MsG0380015027.01.T01
Chr3 CDS 64093632 64093676 64093632 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64093286 64093394 64093286 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64093099 64093154 64093099 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64092905 64092962 64092905 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64092725 64092813 64092725 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64092036 64092181 64092036 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64091578 64091720 64091578 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64091406 64091491 64091406 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 CDS 64090761 64090841 64090761 ID=MsG0380015027.01.T01:cds;Parent=MsG0380015027.01.T01
Chr3 three_prime_UTR 64090562 64090760 64090562 ID=MsG0380015027.01.T01:three_prime_utr;Parent=MsG0380015027.01.T01
Gene Sequence

>MsG0380015027.01.T01

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCGGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>MsG0380015027.01.T01

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT*