Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013962.01.T01 | RDY14679.1 | 97.561 | 205 | 5 | 0 | 1 | 205 | 1 | 205 | 6.60E-143 | 415 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013962.01.T01 | Q49L08 | 96.098 | 205 | 8 | 0 | 1 | 205 | 1 | 205 | 3.97E-134 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013962.01.T01 | A0A371II30 | 97.561 | 205 | 5 | 0 | 1 | 205 | 1 | 205 | 3.15e-143 | 415 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047967.01 | MsG0380013962.01 | 0.807782 | 4.272442e-50 | 2.401071e-47 |
| MsG0080048560.01 | MsG0380013962.01 | 0.836154 | 1.104967e-56 | 1.380722e-53 |
| MsG0080048690.01 | MsG0380013962.01 | 0.843344 | 1.484336e-58 | 2.315819e-55 |
| MsG0080048691.01 | MsG0380013962.01 | 0.844564 | 6.993520e-59 | 1.133627e-55 |
| MsG0080048692.01 | MsG0380013962.01 | 0.873418 | 1.493226e-67 | 6.476107e-64 |
| MsG0080048693.01 | MsG0380013962.01 | 0.859835 | 3.142076e-63 | 8.413333e-60 |
| MsG0080048694.01 | MsG0380013962.01 | 0.822491 | 2.301963e-53 | 1.929697e-50 |
| MsG0080048695.01 | MsG0380013962.01 | 0.822106 | 2.828724e-53 | 2.345216e-50 |
| MsG0080048697.01 | MsG0380013962.01 | 0.847882 | 8.729752e-60 | 1.573734e-56 |
| MsG0080048698.01 | MsG0380013962.01 | 0.867023 | 1.857249e-65 | 6.388751e-62 |
| MsG0080048699.01 | MsG0380013962.01 | 0.863619 | 2.187537e-64 | 6.673611e-61 |
| MsG0080049076.01 | MsG0380013962.01 | 0.851739 | 7.292511e-61 | 1.490422e-57 |
| MsG0180001507.01 | MsG0380013962.01 | 0.821693 | 3.526001e-53 | 2.889257e-50 |
| MsG0180001925.01 | MsG0380013962.01 | 0.824512 | 7.754555e-54 | 6.883289e-51 |
| MsG0180002214.01 | MsG0380013962.01 | 0.811964 | 5.378374e-51 | 3.376050e-48 |
| MsG0180002439.01 | MsG0380013962.01 | 0.821972 | 3.038601e-53 | 2.509594e-50 |
| MsG0180002546.01 | MsG0380013962.01 | 0.805136 | 1.544271e-49 | 8.107006e-47 |
| MsG0180004586.01 | MsG0380013962.01 | 0.815581 | 8.590635e-52 | 5.946074e-49 |
| MsG0180004761.01 | MsG0380013962.01 | 0.817265 | 3.607853e-52 | 2.614846e-49 |
| MsG0280010695.01 | MsG0380013962.01 | 0.826962 | 2.033977e-54 | 1.936581e-51 |
| MsG0380013448.01 | MsG0380013962.01 | 0.854003 | 1.643113e-61 | 3.617710e-58 |
| MsG0380013888.01 | MsG0380013962.01 | 0.862777 | 3.984129e-64 | 1.180806e-60 |
| MsG0380013890.01 | MsG0380013962.01 | 0.834605 | 2.721477e-56 | 3.245891e-53 |
| MsG0380013892.01 | MsG0380013962.01 | 0.835609 | 1.519278e-56 | 1.867313e-53 |
| MsG0380013914.01 | MsG0380013962.01 | 0.806627 | 7.502449e-50 | 4.091616e-47 |
| MsG0380013916.01 | MsG0380013962.01 | 0.831523 | 1.590693e-55 | 1.730598e-52 |
| MsG0380013917.01 | MsG0380013962.01 | 0.841998 | 3.382398e-58 | 5.057832e-55 |
| MsG0380013918.01 | MsG0380013962.01 | 0.832738 | 7.965661e-56 | 8.983163e-53 |
| MsG0380013920.01 | MsG0380013962.01 | 0.802984 | 4.328197e-49 | 2.149763e-46 |
| MsG0380013921.01 | MsG0380013962.01 | 0.825713 | 4.033591e-54 | 3.705523e-51 |
| MsG0380013923.01 | MsG0380013962.01 | 0.824806 | 6.610487e-54 | 5.918332e-51 |
| MsG0380013925.01 | MsG0380013962.01 | 0.808182 | 3.511760e-50 | 1.994545e-47 |
| MsG0380013926.01 | MsG0380013962.01 | 0.874461 | 6.635718e-68 | 2.989928e-64 |
| MsG0380013928.01 | MsG0380013962.01 | 0.814276 | 1.673175e-51 | 1.117778e-48 |
| MsG0380013929.01 | MsG0380013962.01 | 0.842375 | 2.686744e-58 | 4.065932e-55 |
| MsG0380013931.01 | MsG0380013962.01 | 0.863445 | 2.477677e-64 | 7.511933e-61 |
| MsG0380013935.01 | MsG0380013962.01 | 0.815670 | 8.209353e-52 | 5.696131e-49 |
| MsG0380013936.01 | MsG0380013962.01 | 0.804209 | 2.410435e-49 | 1.235509e-46 |
| MsG0380013937.01 | MsG0380013962.01 | 0.803600 | 3.226178e-49 | 1.628050e-46 |
| MsG0380013940.01 | MsG0380013962.01 | 0.879195 | 1.518814e-69 | 8.160175e-66 |
| MsG0380013941.01 | MsG0380013962.01 | 0.874094 | 8.832051e-68 | 3.924155e-64 |
| MsG0380013942.01 | MsG0380013962.01 | 0.876090 | 1.840494e-68 | 8.807430e-65 |
| MsG0380013943.01 | MsG0380013962.01 | 0.869805 | 2.351194e-66 | 8.939184e-63 |
| MsG0380013944.01 | MsG0380013962.01 | 0.854878 | 9.175408e-62 | 2.079259e-58 |
| MsG0380013945.01 | MsG0380013962.01 | 0.875670 | 2.566293e-68 | 1.208750e-64 |
| MsG0380013948.01 | MsG0380013962.01 | 0.817963 | 2.511180e-52 | 1.855207e-49 |
| MsG0380013951.01 | MsG0380013962.01 | 0.875624 | 2.661186e-68 | 1.251278e-64 |
| MsG0380013952.01 | MsG0380013962.01 | 0.858042 | 1.080682e-62 | 2.721651e-59 |
| MsG0380013953.01 | MsG0380013962.01 | 0.863067 | 3.243112e-64 | 9.706044e-61 |
| MsG0380013954.01 | MsG0380013962.01 | 0.818086 | 2.354281e-52 | 1.745153e-49 |
| MsG0380013956.01 | MsG0380013962.01 | 0.841170 | 5.590823e-58 | 8.146258e-55 |
| MsG0380013957.01 | MsG0380013962.01 | 0.875326 | 3.366294e-68 | 1.565118e-64 |
| MsG0380013959.01 | MsG0380013962.01 | 0.822361 | 2.469024e-53 | 2.062148e-50 |
| MsG0380013961.01 | MsG0380013962.01 | 0.892265 | 1.861414e-74 | 1.688605e-70 |
| MsG0380013962.01 | MsG0380013966.01 | 0.889024 | 3.506940e-73 | 2.782223e-69 |
| MsG0380013962.01 | MsG0380013967.01 | 0.875824 | 2.272760e-68 | 1.076849e-64 |
| MsG0380013962.01 | MsG0380013968.01 | 0.870740 | 1.161106e-66 | 4.565815e-63 |
| MsG0380013962.01 | MsG0380013969.01 | 0.853995 | 1.651950e-61 | 3.636179e-58 |
| MsG0380013962.01 | MsG0380013971.01 | 0.864553 | 1.119354e-64 | 3.528484e-61 |
| MsG0380013962.01 | MsG0380013972.01 | 0.829536 | 4.873544e-55 | 5.002037e-52 |
| MsG0380013962.01 | MsG0380013975.01 | 0.862767 | 4.013516e-64 | 1.189085e-60 |
| MsG0380013962.01 | MsG0380013977.01 | 0.878739 | 2.201478e-69 | 1.162518e-65 |
| MsG0380013962.01 | MsG0380013981.01 | 0.843278 | 1.546417e-58 | 2.407372e-55 |
| MsG0380013962.01 | MsG0380013983.01 | 0.829691 | 4.467460e-55 | 4.606576e-52 |
| MsG0380013962.01 | MsG0380013984.01 | 0.821699 | 3.514971e-53 | 2.880688e-50 |
| MsG0380013962.01 | MsG0380013986.01 | 0.820008 | 8.605124e-53 | 6.728376e-50 |
| MsG0380013962.01 | MsG0380013997.01 | 0.824099 | 9.698517e-54 | 8.507629e-51 |
| MsG0380013962.01 | MsG0380013999.01 | 0.846851 | 1.674939e-59 | 2.921561e-56 |
| MsG0380013962.01 | MsG0380014004.01 | 0.814065 | 1.862754e-51 | 1.237325e-48 |
| MsG0380013962.01 | MsG0380014005.01 | 0.877703 | 5.080618e-69 | 2.580105e-65 |
| MsG0380013962.01 | MsG0380014006.01 | 0.862139 | 6.261717e-64 | 1.814623e-60 |
| MsG0380013962.01 | MsG0380014008.01 | 0.810644 | 1.040555e-50 | 6.306876e-48 |
| MsG0380013962.01 | MsG0380014016.01 | 0.813605 | 2.352161e-51 | 1.543061e-48 |
| MsG0380013962.01 | MsG0380014017.01 | 0.864713 | 9.977294e-65 | 3.163313e-61 |
| MsG0380013962.01 | MsG0380014018.01 | 0.870629 | 1.263162e-66 | 4.947328e-63 |
| MsG0380013962.01 | MsG0380014020.01 | 0.834291 | 3.263443e-56 | 3.855962e-53 |
| MsG0380013962.01 | MsG0380014021.01 | 0.820281 | 7.452977e-53 | 5.871532e-50 |
| MsG0380013962.01 | MsG0380014023.01 | 0.864723 | 9.903999e-65 | 3.140924e-61 |
| MsG0380013962.01 | MsG0380014024.01 | 0.836095 | 1.143808e-56 | 1.426703e-53 |
| MsG0380013962.01 | MsG0380014026.01 | 0.883430 | 4.518299e-71 | 2.863371e-67 |
| MsG0380013962.01 | MsG0380014027.01 | 0.833583 | 4.906705e-56 | 5.675156e-53 |
| MsG0380013962.01 | MsG0380014029.01 | 0.809347 | 1.979409e-50 | 1.159394e-47 |
| MsG0380013962.01 | MsG0380014032.01 | 0.867688 | 1.138170e-65 | 4.008846e-62 |
| MsG0380013962.01 | MsG0380014033.01 | 0.869603 | 2.735996e-66 | 1.032825e-62 |
| MsG0380013962.01 | MsG0380014034.01 | 0.825423 | 4.725706e-54 | 4.305384e-51 |
| MsG0380013962.01 | MsG0380014039.01 | 0.846257 | 2.432687e-59 | 4.162533e-56 |
| MsG0380013962.01 | MsG0380014040.01 | 0.836692 | 8.063295e-57 | 1.023932e-53 |
| MsG0380013962.01 | MsG0380014044.01 | 0.805561 | 1.258198e-49 | 6.677356e-47 |
| MsG0380013962.01 | MsG0380014046.01 | 0.810524 | 1.104465e-50 | 6.672579e-48 |
| MsG0380013962.01 | MsG0380014051.01 | 0.834517 | 2.862583e-56 | 3.405452e-53 |
| MsG0380013962.01 | MsG0380014054.01 | 0.837096 | 6.356975e-57 | 8.171132e-54 |
| MsG0380013962.01 | MsG0380014057.01 | 0.855314 | 6.857891e-62 | 1.576852e-58 |
| MsG0380013962.01 | MsG0380015348.01 | 0.816344 | 5.804164e-52 | 4.102455e-49 |
| MsG0380013962.01 | MsG0380016424.01 | 0.809591 | 1.754685e-50 | 1.034474e-47 |
| MsG0380013962.01 | MsG0380017007.01 | 0.866670 | 2.405343e-65 | 8.174663e-62 |
| MsG0380013962.01 | MsG0480018296.01 | 0.872484 | 3.069339e-67 | 1.286735e-63 |
| MsG0380013962.01 | MsG0480019668.01 | 0.810674 | 1.025209e-50 | 6.218968e-48 |
| MsG0380013962.01 | MsG0480020052.01 | 0.848826 | 4.783512e-60 | 8.890125e-57 |
| MsG0380013962.01 | MsG0480021331.01 | 0.813895 | 2.030709e-51 | 1.342678e-48 |
| MsG0380013962.01 | MsG0480021476.01 | 0.808905 | 2.461950e-50 | 1.424946e-47 |
| MsG0380013962.01 | MsG0480022591.01 | 0.817989 | 2.476808e-52 | 1.831171e-49 |
| MsG0380013962.01 | MsG0580024570.01 | 0.837676 | 4.517440e-57 | 5.911903e-54 |
| MsG0380013962.01 | MsG0580027677.01 | 0.883973 | 2.849674e-71 | 1.846231e-67 |
| MsG0380013962.01 | MsG0680030439.01 | 0.807444 | 5.039299e-50 | 2.807251e-47 |
| MsG0380013962.01 | MsG0780038197.01 | 0.850899 | 1.259853e-60 | 2.505331e-57 |
| MsG0380013962.01 | MsG0780040316.01 | 0.844994 | 5.353523e-59 | 8.795882e-56 |
| MsG0380013962.01 | MsG0880044440.01 | 0.811394 | 7.156016e-51 | 4.424547e-48 |
| MsG0380013962.01 | MsG0880045097.01 | 0.830326 | 3.126937e-55 | 3.283810e-52 |
| MsG0380013962.01 | MsG0880045188.01 | 0.802934 | 4.432083e-49 | 2.198621e-46 |
| MsG0380013962.01 | MsG0880045630.01 | 0.851982 | 6.224053e-61 | 1.281465e-57 |
| MsG0280006475.01 | MsG0380013962.01 | 0.828547 | 8.461235e-55 | 8.436942e-52 |
| MsG0280009541.01 | MsG0380013962.01 | 0.801567 | 8.472214e-49 | 4.059157e-46 |
| MsG0280009733.01 | MsG0380013962.01 | 0.824969 | 6.052367e-54 | 5.443706e-51 |
| MsG0280009971.01 | MsG0380013962.01 | -0.829245 | 5.732993e-55 | 5.834999e-52 |
| MsG0280010137.01 | MsG0380013962.01 | 0.814793 | 1.285894e-51 | 8.711112e-49 |
| MsG0280010140.01 | MsG0380013962.01 | 0.801340 | 9.429599e-49 | 4.492154e-46 |
| MsG0280010142.01 | MsG0380013962.01 | 0.807382 | 5.195353e-50 | 2.889537e-47 |
| MsG0280010143.01 | MsG0380013962.01 | 0.823599 | 1.269999e-53 | 1.098521e-50 |
| MsG0280010144.01 | MsG0380013962.01 | 0.814470 | 1.515704e-51 | 1.017964e-48 |
| MsG0280010145.01 | MsG0380013962.01 | 0.872980 | 2.095195e-67 | 8.940646e-64 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013962.01.T01 | MTR_4g051120 | 99.512 | 205 | 1 | 0 | 1 | 205 | 1 | 205 | 1.23e-140 | 426 |
| MsG0380013962.01.T01 | MTR_8g016520 | 96.809 | 188 | 6 | 0 | 1 | 188 | 1 | 188 | 1.14e-133 | 375 |
| MsG0380013962.01.T01 | MTR_0002s0510 | 92.118 | 203 | 16 | 0 | 3 | 205 | 1670 | 1872 | 3.24e-126 | 393 |
| MsG0380013962.01.T01 | MTR_2g080240 | 96.000 | 75 | 3 | 0 | 1 | 75 | 20 | 94 | 3.19e-47 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013962.01.T01 | ATCG00170 | 96.517 | 201 | 7 | 0 | 5 | 205 | 1 | 201 | 4.88e-133 | 405 |
Find 51 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACAACAAAGTTCTATTT+TGG | 0.177929 | 3:-48522065 | MsG0380013962.01.T01:CDS |
| TCTGCTAATAAGTCGTTTAA+TGG | 0.223864 | 3:+48522237 | None:intergenic |
| ATCCTCTCATTCCGACTAAT+TGG | 0.248879 | 3:+48521858 | None:intergenic |
| CATTATATGGACTGGATTAA+AGG | 0.289410 | 3:+48521919 | None:intergenic |
| GGGTCAGTCATCCTAAAATT+AGG | 0.301712 | 3:+48521941 | None:intergenic |
| ATACCGGATTAATAGTATTC+TGG | 0.304788 | 3:-48521690 | MsG0380013962.01.T01:CDS |
| TTCTCGTAAATTGCTTTGAA+TGG | 0.322270 | 3:+48521799 | None:intergenic |
| CAGTATCCACAACCCCTTTA+CGG | 0.329838 | 3:+48521735 | None:intergenic |
| AACTTTGTTGTTCAGCATCT+TGG | 0.334259 | 3:+48522074 | None:intergenic |
| TACGCCAATCCATTGAAATA+TGG | 0.339395 | 3:-48522000 | MsG0380013962.01.T01:CDS |
| ACTGCTACATCTATTTCATT+AGG | 0.354727 | 3:-48522139 | MsG0380013962.01.T01:CDS |
| ATTATATGGACTGGATTAAA+GGG | 0.370361 | 3:+48521920 | None:intergenic |
| CGAAATGAGCGACTTCAAAT+AGG | 0.374640 | 3:+48521653 | None:intergenic |
| TGGACTAGCCATCCTTTAGA+AGG | 0.382153 | 3:+48522094 | None:intergenic |
| TTCAAATAGGTTCATTGCTC+CGG | 0.387556 | 3:+48521666 | None:intergenic |
| GTGGAATATGGAGGTACTTA+TGG | 0.396890 | 3:-48522308 | None:intergenic |
| AGTATCCACAACCCCTTTAC+GGG | 0.401249 | 3:+48521736 | None:intergenic |
| CTTGCTACGGAGCCCGTAAA+GGG | 0.410011 | 3:-48521748 | MsG0380013962.01.T01:CDS |
| AGCAGATTAATAGACCATTT+CGG | 0.411046 | 3:-48522220 | MsG0380013962.01.T01:CDS |
| TCTCGTAAATTGCTTTGAAT+GGG | 0.433790 | 3:+48521800 | None:intergenic |
| CATACCATATTTCAATGGAT+TGG | 0.443039 | 3:+48521996 | None:intergenic |
| GGAGGTACTTATGGCAGAAC+GGG | 0.448573 | 3:-48522299 | MsG0380013962.01.T01:CDS |
| TGTAGCATACCATATTTCAA+TGG | 0.450731 | 3:+48521991 | None:intergenic |
| TACCGGATTAATAGTATTCT+GGG | 0.455516 | 3:-48521689 | MsG0380013962.01.T01:CDS |
| CTGGATCAAGTAAAGACTCT+AGG | 0.462436 | 3:-48522175 | MsG0380013962.01.T01:CDS |
| CTAGAGTCTTTACTTGATCC+AGG | 0.463607 | 3:+48522176 | None:intergenic |
| GTCTTTCACAATAACGTGAT+AGG | 0.489141 | 3:-48522268 | MsG0380013962.01.T01:CDS |
| GTTATTGTGAAAGACTAGAT+TGG | 0.489846 | 3:+48522276 | None:intergenic |
| TCTTGCTACGGAGCCCGTAA+AGG | 0.490200 | 3:-48521749 | MsG0380013962.01.T01:CDS |
| GGCATATACATCACACATCC+TGG | 0.495134 | 3:-48522194 | MsG0380013962.01.T01:CDS |
| TAACAATACCTTCTAAAGGA+TGG | 0.495965 | 3:-48522102 | MsG0380013962.01.T01:CDS |
| GGCCCAGAATACTATTAATC+CGG | 0.497844 | 3:+48521687 | None:intergenic |
| CGGAGCCCGTAAAGGGGTTG+TGG | 0.513039 | 3:-48521741 | MsG0380013962.01.T01:CDS |
| AAATCAATCATTTGTCCTTG+TGG | 0.513235 | 3:+48521824 | None:intergenic |
| TAGATGTAGCAGTAGCTTGA+CGG | 0.516966 | 3:+48522149 | None:intergenic |
| ATGTATATGCCATTCCGAAA+TGG | 0.525535 | 3:+48522206 | None:intergenic |
| GAATATATAATTTCTTGCTA+CGG | 0.534554 | 3:-48521761 | MsG0380013962.01.T01:CDS |
| TGGATCAAGTAAAGACTCTA+GGG | 0.538268 | 3:-48522174 | MsG0380013962.01.T01:CDS |
| GAACATCAGATGCTGGATAC+CGG | 0.556559 | 3:-48521706 | MsG0380013962.01.T01:CDS |
| GCTGTACGAACATCAGATGC+TGG | 0.573261 | 3:-48521713 | MsG0380013962.01.T01:CDS |
| CACCAATTAGTCGGAATGAG+AGG | 0.580106 | 3:-48521860 | MsG0380013962.01.T01:CDS |
| ATTAATAGACCATTTCGGAA+TGG | 0.587547 | 3:-48522215 | MsG0380013962.01.T01:CDS |
| ATTCAAAGCAATTTACGAGA+AGG | 0.601229 | 3:-48521797 | MsG0380013962.01.T01:CDS |
| TGGAGGTACTTATGGCAGAA+CGG | 0.603183 | 3:-48522300 | MsG0380013962.01.T01:CDS |
| GGATTAATAGTATTCTGGGC+CGG | 0.606095 | 3:-48521685 | MsG0380013962.01.T01:CDS |
| TCTCAAGTGCACCAATTAGT+CGG | 0.615181 | 3:-48521869 | MsG0380013962.01.T01:CDS |
| TTGCTACGGAGCCCGTAAAG+GGG | 0.638134 | 3:-48521747 | MsG0380013962.01.T01:CDS |
| TTTCACAATAACGTGATAGG+TGG | 0.645396 | 3:-48522265 | MsG0380013962.01.T01:CDS |
| TTATATGGACTGGATTAAAG+GGG | 0.684921 | 3:+48521921 | None:intergenic |
| TCAGTATGGGAATGTACATG+CGG | 0.691247 | 3:-48522032 | MsG0380013962.01.T01:CDS |
| GGATTAATGTCAGATCCACA+AGG | 0.711466 | 3:-48521839 | MsG0380013962.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATATAATTTCTTGCTA+CGG | - | Chr3:48522207-48522226 | MsG0380013962.01.T01:CDS | 20.0% |
| !!! | AAGAAATGAATCCTAATTTT+AGG | - | Chr3:48522016-48522035 | MsG0380013962.01.T01:CDS | 20.0% |
| ! | TGGAAAAACATAATCAGTAT+GGG | - | Chr3:48521923-48521942 | MsG0380013962.01.T01:CDS | 25.0% |
| ! | TTGGAAAAACATAATCAGTA+TGG | - | Chr3:48521922-48521941 | MsG0380013962.01.T01:CDS | 25.0% |
| !! | CTTTTAACAATACCTTCTAA+AGG | - | Chr3:48521862-48521881 | MsG0380013962.01.T01:CDS | 25.0% |
| !! | TGAACAACAAAGTTCTATTT+TGG | - | Chr3:48521903-48521922 | MsG0380013962.01.T01:CDS | 25.0% |
| !!! | ATTATATGGACTGGATTAAA+GGG | + | Chr3:48522051-48522070 | None:intergenic | 25.0% |
| AAATCAATCATTTGTCCTTG+TGG | + | Chr3:48522147-48522166 | None:intergenic | 30.0% | |
| ACTGCTACATCTATTTCATT+AGG | - | Chr3:48521829-48521848 | MsG0380013962.01.T01:CDS | 30.0% | |
| AGCAGATTAATAGACCATTT+CGG | - | Chr3:48521748-48521767 | MsG0380013962.01.T01:CDS | 30.0% | |
| ATACCGGATTAATAGTATTC+TGG | - | Chr3:48522278-48522297 | MsG0380013962.01.T01:CDS | 30.0% | |
| ATTAATAGACCATTTCGGAA+TGG | - | Chr3:48521753-48521772 | MsG0380013962.01.T01:CDS | 30.0% | |
| ATTCAAAGCAATTTACGAGA+AGG | - | Chr3:48522171-48522190 | MsG0380013962.01.T01:CDS | 30.0% | |
| CATACCATATTTCAATGGAT+TGG | + | Chr3:48521975-48521994 | None:intergenic | 30.0% | |
| CTCCTGAAAAAGACATTATA+TGG | + | Chr3:48522065-48522084 | None:intergenic | 30.0% | |
| GAAAAAGACATTATATGGAC+TGG | + | Chr3:48522060-48522079 | None:intergenic | 30.0% | |
| GTTATTGTGAAAGACTAGAT+TGG | + | Chr3:48521695-48521714 | None:intergenic | 30.0% | |
| TACCGGATTAATAGTATTCT+GGG | - | Chr3:48522279-48522298 | MsG0380013962.01.T01:CDS | 30.0% | |
| TCTGCTAATAAGTCGTTTAA+TGG | + | Chr3:48521734-48521753 | None:intergenic | 30.0% | |
| TGTAGCATACCATATTTCAA+TGG | + | Chr3:48521980-48521999 | None:intergenic | 30.0% | |
| ! | GTCCATATAATGTCTTTTTC+AGG | - | Chr3:48522060-48522079 | MsG0380013962.01.T01:CDS | 30.0% |
| ! | TAACAATACCTTCTAAAGGA+TGG | - | Chr3:48521866-48521885 | MsG0380013962.01.T01:CDS | 30.0% |
| ! | TCTCGTAAATTGCTTTGAAT+GGG | + | Chr3:48522171-48522190 | None:intergenic | 30.0% |
| ! | TTCTCGTAAATTGCTTTGAA+TGG | + | Chr3:48522172-48522191 | None:intergenic | 30.0% |
| !! | CATTATATGGACTGGATTAA+AGG | + | Chr3:48522052-48522071 | None:intergenic | 30.0% |
| !! | TTATATGGACTGGATTAAAG+GGG | + | Chr3:48522050-48522069 | None:intergenic | 30.0% |
| ATGTATATGCCATTCCGAAA+TGG | + | Chr3:48521765-48521784 | None:intergenic | 35.0% | |
| GTCTTTCACAATAACGTGAT+AGG | - | Chr3:48521700-48521719 | MsG0380013962.01.T01:CDS | 35.0% | |
| TACGCCAATCCATTGAAATA+TGG | - | Chr3:48521968-48521987 | MsG0380013962.01.T01:CDS | 35.0% | |
| TGGATCAAGTAAAGACTCTA+GGG | - | Chr3:48521794-48521813 | MsG0380013962.01.T01:CDS | 35.0% | |
| TTTCACAATAACGTGATAGG+TGG | - | Chr3:48521703-48521722 | MsG0380013962.01.T01:CDS | 35.0% | |
| !! | AACTTTGTTGTTCAGCATCT+TGG | + | Chr3:48521897-48521916 | None:intergenic | 35.0% |
| ATCCTCTCATTCCGACTAAT+TGG | + | Chr3:48522113-48522132 | None:intergenic | 40.0% | |
| CTAGAGTCTTTACTTGATCC+AGG | + | Chr3:48521795-48521814 | None:intergenic | 40.0% | |
| CTGGATCAAGTAAAGACTCT+AGG | - | Chr3:48521793-48521812 | MsG0380013962.01.T01:CDS | 40.0% | |
| GGATTAATAGTATTCTGGGC+CGG | - | Chr3:48522283-48522302 | MsG0380013962.01.T01:CDS | 40.0% | |
| GGATTAATGTCAGATCCACA+AGG | - | Chr3:48522129-48522148 | MsG0380013962.01.T01:CDS | 40.0% | |
| GGCCCAGAATACTATTAATC+CGG | + | Chr3:48522284-48522303 | None:intergenic | 40.0% | |
| GGGTCAGTCATCCTAAAATT+AGG | + | Chr3:48522030-48522049 | None:intergenic | 40.0% | |
| TAGATGTAGCAGTAGCTTGA+CGG | + | Chr3:48521822-48521841 | None:intergenic | 40.0% | |
| TCAGTATGGGAATGTACATG+CGG | - | Chr3:48521936-48521955 | MsG0380013962.01.T01:CDS | 40.0% | |
| TCTCAAGTGCACCAATTAGT+CGG | - | Chr3:48522099-48522118 | MsG0380013962.01.T01:CDS | 40.0% | |
| !!! | ATGTCTTTTTCAGGAGCTAG+AGG | - | Chr3:48522069-48522088 | MsG0380013962.01.T01:CDS | 40.0% |
| AGTATCCACAACCCCTTTAC+GGG | + | Chr3:48522235-48522254 | None:intergenic | 45.0% | |
| CACCAATTAGTCGGAATGAG+AGG | - | Chr3:48522108-48522127 | MsG0380013962.01.T01:CDS | 45.0% | |
| CAGTATCCACAACCCCTTTA+CGG | + | Chr3:48522236-48522255 | None:intergenic | 45.0% | |
| GAACATCAGATGCTGGATAC+CGG | - | Chr3:48522262-48522281 | MsG0380013962.01.T01:CDS | 45.0% | |
| GGCATATACATCACACATCC+TGG | - | Chr3:48521774-48521793 | MsG0380013962.01.T01:CDS | 45.0% | |
| !! | TGGACTAGCCATCCTTTAGA+AGG | + | Chr3:48521877-48521896 | None:intergenic | 45.0% |
| !! | TGGAGGTACTTATGGCAGAA+CGG | - | Chr3:48521668-48521687 | MsG0380013962.01.T01:CDS | 45.0% |
| GCTGTACGAACATCAGATGC+TGG | - | Chr3:48522255-48522274 | MsG0380013962.01.T01:CDS | 50.0% | |
| !! | GGAGGTACTTATGGCAGAAC+GGG | - | Chr3:48521669-48521688 | MsG0380013962.01.T01:CDS | 50.0% |
| CTTGCTACGGAGCCCGTAAA+GGG | - | Chr3:48522220-48522239 | MsG0380013962.01.T01:CDS | 55.0% | |
| TCTTGCTACGGAGCCCGTAA+AGG | - | Chr3:48522219-48522238 | MsG0380013962.01.T01:CDS | 55.0% | |
| TTGCTACGGAGCCCGTAAAG+GGG | - | Chr3:48522221-48522240 | MsG0380013962.01.T01:CDS | 55.0% | |
| CGGAGCCCGTAAAGGGGTTG+TGG | - | Chr3:48522227-48522246 | MsG0380013962.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48521667 | 48522323 | 48521667 | ID=MsG0380013962.01;Name=MsG0380013962.01 |
| Chr3 | mRNA | 48521667 | 48522323 | 48521667 | ID=MsG0380013962.01.T01;Parent=MsG0380013962.01;Name=MsG0380013962.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|218 |
| Chr3 | exon | 48521667 | 48522323 | 48521667 | ID=MsG0380013962.01.T01:exon:9208;Parent=MsG0380013962.01.T01 |
| Chr3 | CDS | 48521667 | 48522323 | 48521667 | ID=MsG0380013962.01.T01:cds;Parent=MsG0380013962.01.T01 |
| Gene Sequence |
| Protein sequence |
