AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048695.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048695.01.T01 MTR_4g051290 99.433 353 2 0 1 353 1 353 0.0 711
MsG0080048695.01.T01 MTR_7g021750 99.150 353 3 0 1 353 1 353 0.0 710
MsG0080048695.01.T01 MTR_0002s0380 98.017 353 7 0 1 353 1 353 0.0 705
MsG0080048695.01.T01 MTR_7g017540 57.556 311 37 4 37 347 1 216 6.94e-104 305
MsG0080048695.01.T01 MTR_1g057280 88.710 124 14 0 4 127 1 124 1.56e-75 229
MsG0080048695.01.T01 MTR_4g050770 90.756 119 11 0 1 119 1 119 2.04e-72 221
MsG0080048695.01.T01 MTR_2g089580 92.982 114 8 0 1 114 1 114 2.11e-70 216
MsG0080048695.01.T01 MTR_3g088450 98.020 101 2 0 253 353 14 114 1.96e-65 202
MsG0080048695.01.T01 MTR_4g006190 64.384 146 11 2 37 182 1 105 2.61e-48 158
MsG0080048695.01.T01 MTR_0002s0420 29.866 298 198 6 8 302 10 299 3.98e-39 148
MsG0080048695.01.T01 MTR_4g073360 29.391 279 187 5 25 300 8 279 7.87e-36 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048695.01.T01 ATCG00020 98.867 353 4 0 1 353 1 353 0.0 709
MsG0080048695.01.T01 ATCG00270 30.872 298 195 6 8 302 10 299 5.15e-43 152

Find 95 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTATGATTGTATTTC+AGG 0.094964 contig404end:-38441 MsG0080048694.01.T01:CDS
TACGGAAACAATATTATTTC+TGG 0.148897 contig404end:-38764 MsG0080048694.01.T01:CDS
GGTATTCGTGAGCCTGTTTC+TGG 0.153797 contig404end:-38797 MsG0080048694.01.T01:CDS
ACTATGGCTTTCAACTTAAA+TGG 0.204485 contig404end:-38107 MsG0080048694.01.T01:CDS
GTAGCGGCTCATGGTTATTT+TGG 0.211941 contig404end:-38236 MsG0080048694.01.T01:CDS
ATGAGCCGCTACAATATTAT+AGG 0.272473 contig404end:+38247 None:intergenic
CTTGGCCTGTAGTAGGTATC+TGG 0.286287 contig404end:-38151 MsG0080048694.01.T01:CDS
AACCGTGCATAGCACTAAAT+AGG 0.289873 contig404end:+38354 None:intergenic
GTTTCTGGATCTCTACTTTA+CGG 0.304376 contig404end:-38782 MsG0080048694.01.T01:CDS
TATGGGGTCGCTTCTGTAAC+TGG 0.325492 contig404end:-38943 MsG0080048695.01.T01:CDS
GTCGAGGCTCCATCTATAAA+TGG 0.328108 contig404end:-37945 MsG0080048694.01.T01:CDS
ATGCATCCATTTCACATGTT+AGG 0.334267 contig404end:-38401 MsG0080048694.01.T01:CDS
GAAAAGCTTCCTTGACCAAT+TGG 0.357543 contig404end:+38497 None:intergenic
ACGGATGCAGCTTCCCATAT+CGG 0.367380 contig404end:+38698 None:intergenic
AATTGTTGAAACTAGCATAT+TGG 0.372196 contig404end:+38201 None:intergenic
CGTCTTTACATTGGATGGTT+TGG 0.372317 contig404end:-38902 MsG0080048695.01.T01:CDS
TGGTAACTTCTAGTTTGATC+AGG 0.373357 contig404end:-38328 MsG0080048694.01.T01:CDS
TACAGAAGTTGCGGTCAATA+AGG 0.375984 contig404end:+38862 None:intergenic
CGCATTAGGTATCAGCACTA+TGG 0.383333 contig404end:-38123 MsG0080048694.01.T01:CDS
GGTATCTGGTTTACCGCATT+AGG 0.389981 contig404end:-38137 MsG0080048694.01.T01:CDS
TACATTTCTTCCTAGCTGCT+TGG 0.392937 contig404end:-38169 MsG0080048694.01.T01:CDS
AAATATTATCCATTTATAGA+TGG 0.399782 contig404end:+37936 None:intergenic
GACGCGATAGCGAAAACCTA+TGG 0.411483 contig404end:-38961 MsG0080048695.01.T01:CDS
TTAGGTGTAGCTGGTGTATT+CGG 0.411606 contig404end:-38383 MsG0080048694.01.T01:CDS
TTCGTCTGGGTATGCGCCCT+TGG 0.418396 contig404end:-38577 MsG0080048694.01.T01:CDS
CTTGACTATCAACTACTGAT+TGG 0.426567 contig404end:+38072 None:intergenic
ACTTGGTGTAGCTTGTTACA+TGG 0.436838 contig404end:-38621 MsG0080048694.01.T01:CDS
TGTAGAACAATTAGTTCATA+AGG 0.437646 contig404end:+38650 None:intergenic
CTAGCTGCTTGGCCTGTAGT+AGG 0.440325 contig404end:-38158 MsG0080048694.01.T01:CDS
TAAAGTAGAGATCCAGAAAC+AGG 0.442058 contig404end:+38785 None:intergenic
CGAATACCATCAATATCTAC+TGG 0.444826 contig404end:+38812 None:intergenic
ACTGCAGTAGCAGCTGCAAC+AGG 0.445711 contig404end:+38533 None:intergenic
GCTACACCTAACATGTGAAA+TGG 0.452322 contig404end:+38395 None:intergenic
AGCCGCAGAAGTAGGAATAA+TGG 0.453817 contig404end:+38739 None:intergenic
AAAAGCTTCCTTGACCAATT+GGG 0.461317 contig404end:+38498 None:intergenic
TTTCACATGTTAGGTGTAGC+TGG 0.469077 contig404end:-38392 MsG0080048694.01.T01:CDS
GGTATGCCTCTAGGAATCTC+TGG 0.470401 contig404end:-38470 MsG0080048694.01.T01:CDS
GCTAATGAAGGTTACAGATT+CGG 0.475758 contig404end:-38284 MsG0080048694.01.T01:CDS
CGGATGCAGCTTCCCATATC+GGG 0.477757 contig404end:+38699 None:intergenic
GCCCCTCCAGTAGATATTGA+TGG 0.479743 contig404end:-38818 MsG0080048694.01.T01:CDS
ATTCCTACTTCTGCGGCTAT+CGG 0.479971 contig404end:-38734 MsG0080048694.01.T01:CDS
ATTGTTCTACACTTCTTACT+TGG 0.483390 contig404end:-38638 MsG0080048694.01.T01:CDS
ACGCGATAGCGAAAACCTAT+GGG 0.487730 contig404end:-38960 MsG0080048695.01.T01:CDS
TAGTGCTATGCACGGTTCCT+TGG 0.490089 contig404end:-38348 MsG0080048694.01.T01:CDS
GAAAATGAATCTGCTAATGA+AGG 0.504633 contig404end:-38296 MsG0080048694.01.T01:CDS
AAAACCGTCTTTACATTGGA+TGG 0.504784 contig404end:-38907 MsG0080048695.01.T01:CDS
TAACCGTGCTAACCTTGGTA+TGG 0.506629 contig404end:-38018 MsG0080048694.01.T01:CDS
TAGCATATTGGAAGATCAAT+CGG 0.506638 contig404end:+38213 None:intergenic
ACCGTGCATAGCACTAAATA+GGG 0.508247 contig404end:+38355 None:intergenic
TATAATATTGTAGCGGCTCA+TGG 0.516941 contig404end:-38245 MsG0080048694.01.T01:CDS
GTCTCTCTAAAATTGCCGTC+AGG 0.518751 contig404end:+38981 None:intergenic
CTTGGTGTAGCTTGTTACAT+GGG 0.525076 contig404end:-38620 MsG0080048694.01.T01:CDS
TCTAGACCTAGCTGCGGTCG+AGG 0.526199 contig404end:-37961 MsG0080048694.01.T01:CDS
ATTATTAACCGTGCTAACCT+TGG 0.526840 contig404end:-38023 MsG0080048694.01.T01:CDS
GAAGTTGCGGTCAATAAGGT+AGG 0.528902 contig404end:+38866 None:intergenic
GGTAACTTCTAGTTTGATCA+GGG 0.532589 contig404end:-38327 MsG0080048694.01.T01:CDS
TCCCTATTTAGTGCTATGCA+CGG 0.549758 contig404end:-38356 MsG0080048694.01.T01:CDS
GAATATGCAACAGCAATCCA+AGG 0.563142 contig404end:+38560 None:intergenic
ACGGTTAATAATATCAGCCC+AGG 0.563451 contig404end:+38034 None:intergenic
GATAATAAATACAGAAGTTG+CGG 0.566120 contig404end:+38853 None:intergenic
TTGATCTACCCAATTGGTCA+AGG 0.568683 contig404end:-38506 MsG0080048694.01.T01:CDS
ATGGAGCCTCGACCGCAGCT+AGG 0.572338 contig404end:+37955 None:intergenic
TACCATCAATATCTACTGGA+GGG 0.577447 contig404end:+38816 None:intergenic
TTGTTACATGGGTCGTGAGT+GGG 0.579018 contig404end:-38609 MsG0080048694.01.T01:CDS
AAACCGATAGCCGCAGAAGT+AGG 0.579727 contig404end:+38731 None:intergenic
CTACTACAGGCCAAGCAGCT+AGG 0.580380 contig404end:+38159 None:intergenic
ACTGAAAACCGTCTTTACAT+TGG 0.581643 contig404end:-38911 MsG0080048695.01.T01:CDS
TGCCATTATTCCTACTTCTG+CGG 0.582467 contig404end:-38741 MsG0080048694.01.T01:CDS
CTTCCATACCAAGGTTAGCA+CGG 0.587709 contig404end:+38015 None:intergenic
CGACCGCAGCTAGGTCTAGA+GGG 0.588594 contig404end:+37964 None:intergenic
ACCATCAATATCTACTGGAG+GGG 0.588944 contig404end:+38817 None:intergenic
CTTGTTACATGGGTCGTGAG+TGG 0.590459 contig404end:-38610 MsG0080048694.01.T01:CDS
AAGGTCGTGTAATTAACACC+TGG 0.599282 contig404end:-38052 MsG0080048694.01.T01:CDS
AAGCTGCATCCGTTGATGAA+TGG 0.600941 contig404end:-38688 MsG0080048694.01.T01:CDS
TCGACCGCAGCTAGGTCTAG+AGG 0.608941 contig404end:+37963 None:intergenic
GTAAACCAGATACCTACTAC+AGG 0.609077 contig404end:+38146 None:intergenic
AAGTTGCGGTCAATAAGGTA+GGG 0.623830 contig404end:+38867 None:intergenic
AGGTTACAGATTCGGTCAAG+AGG 0.630458 contig404end:-38276 MsG0080048694.01.T01:CDS
AGTTACAGAAGCGACCCCAT+AGG 0.631772 contig404end:+38945 None:intergenic
AATATGCAACAGCAATCCAA+GGG 0.635044 contig404end:+38561 None:intergenic
GGTGTAGCTGGTGTATTCGG+CGG 0.636664 contig404end:-38380 MsG0080048694.01.T01:CDS
ATACCATCAATATCTACTGG+AGG 0.642954 contig404end:+38815 None:intergenic
CAAACCATCCAATGTAAAGA+CGG 0.643551 contig404end:+38903 None:intergenic
GTTGTATAACCATTCATCAA+CGG 0.643975 contig404end:+38679 None:intergenic
CGCGATAGCGAAAACCTATG+GGG 0.644401 contig404end:-38959 MsG0080048695.01.T01:CDS
CAATCAGTAGTTGATAGTCA+AGG 0.648342 contig404end:-38071 MsG0080048694.01.T01:CDS
AGGTCGTGTAATTAACACCT+GGG 0.648561 contig404end:-38051 MsG0080048694.01.T01:CDS
CATGCATAACTTCCATACCA+AGG 0.650999 contig404end:+38006 None:intergenic
GATCAAACTAGAAGTTACCA+AGG 0.656817 contig404end:+38331 None:intergenic
AGAAACCTATAATATTGTAG+CGG 0.673114 contig404end:-38252 MsG0080048694.01.T01:CDS
CATAGTGCTGATACCTAATG+CGG 0.691049 contig404end:+38124 None:intergenic
GTTGATGAATGGTTATACAA+CGG 0.701598 contig404end:-38677 MsG0080048694.01.T01:CDS
GATGAATGGTTATACAACGG+TGG 0.713327 contig404end:-38674 MsG0080048694.01.T01:CDS
AAAGTACCAGAGATTCCTAG+AGG 0.716307 contig404end:+38464 None:intergenic
CTTCCCTCTAGACCTAGCTG+CGG 0.753269 contig404end:-37967 MsG0080048694.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTGTTGAAACTAGCATAT+TGG + contig404end:38723-38742 None:intergenic 25.0%
! AGAAACCTATAATATTGTAG+CGG - contig404end:38669-38688 MsG0080048694.01.T01:CDS 25.0%
! CAACTTTATGATTGTATTTC+AGG - contig404end:38480-38499 MsG0080048694.01.T01:CDS 25.0%
! GATAATAAATACAGAAGTTG+CGG + contig404end:38071-38090 None:intergenic 25.0%
! TACGGAAACAATATTATTTC+TGG - contig404end:38157-38176 MsG0080048694.01.T01:CDS 25.0%
! TGTAGAACAATTAGTTCATA+AGG + contig404end:38274-38293 None:intergenic 25.0%
ACTATGGCTTTCAACTTAAA+TGG - contig404end:38814-38833 MsG0080048694.01.T01:CDS 30.0%
ATTGTTCTACACTTCTTACT+TGG - contig404end:38283-38302 MsG0080048694.01.T01:CDS 30.0%
GAAAATGAATCTGCTAATGA+AGG - contig404end:38625-38644 MsG0080048694.01.T01:CDS 30.0%
GTTGTATAACCATTCATCAA+CGG + contig404end:38245-38264 None:intergenic 30.0%
TAGCATATTGGAAGATCAAT+CGG + contig404end:38711-38730 None:intergenic 30.0%
! ATTAGCAGATTCATTTTCTG+TGG + contig404end:38623-38642 None:intergenic 30.0%
! GTTGATGAATGGTTATACAA+CGG - contig404end:38244-38263 MsG0080048694.01.T01:CDS 30.0%
AAAACCGTCTTTACATTGGA+TGG - contig404end:38014-38033 MsG0080048694.01.T01:CDS 35.0%
AAAAGCTTCCTTGACCAATT+GGG + contig404end:38426-38445 None:intergenic 35.0%
AATATGCAACAGCAATCCAA+GGG + contig404end:38363-38382 None:intergenic 35.0%
ACTGAAAACCGTCTTTACAT+TGG - contig404end:38010-38029 MsG0080048694.01.T01:CDS 35.0%
ATACCATCAATATCTACTGG+AGG + contig404end:38109-38128 None:intergenic 35.0%
ATGAGCCGCTACAATATTAT+AGG + contig404end:38677-38696 None:intergenic 35.0%
ATGCATCCATTTCACATGTT+AGG - contig404end:38520-38539 MsG0080048694.01.T01:CDS 35.0%
ATTATTAACCGTGCTAACCT+TGG - contig404end:38898-38917 MsG0080048695.01.T01:CDS 35.0%
CAAACCATCCAATGTAAAGA+CGG + contig404end:38021-38040 None:intergenic 35.0%
CGAATACCATCAATATCTAC+TGG + contig404end:38112-38131 None:intergenic 35.0%
CTTGACTATCAACTACTGAT+TGG + contig404end:38852-38871 None:intergenic 35.0%
GATCAAACTAGAAGTTACCA+AGG + contig404end:38593-38612 None:intergenic 35.0%
GCTAATGAAGGTTACAGATT+CGG - contig404end:38637-38656 MsG0080048694.01.T01:CDS 35.0%
TAAAGTAGAGATCCAGAAAC+AGG + contig404end:38139-38158 None:intergenic 35.0%
TACCATCAATATCTACTGGA+GGG + contig404end:38108-38127 None:intergenic 35.0%
TATAATATTGTAGCGGCTCA+TGG - contig404end:38676-38695 MsG0080048694.01.T01:CDS 35.0%
! GTTTCTGGATCTCTACTTTA+CGG - contig404end:38139-38158 MsG0080048694.01.T01:CDS 35.0%
! GTTTTCTTGATCTACCCAAT+TGG - contig404end:38409-38428 MsG0080048694.01.T01:CDS 35.0%
! TTTGCACTTTTACCCGATAT+GGG - contig404end:38210-38229 MsG0080048694.01.T01:CDS 35.0%
!! CAATCAGTAGTTGATAGTCA+AGG - contig404end:38850-38869 MsG0080048694.01.T01:CDS 35.0%
!! GGTAACTTCTAGTTTGATCA+GGG - contig404end:38594-38613 MsG0080048694.01.T01:CDS 35.0%
!! TGGTAACTTCTAGTTTGATC+AGG - contig404end:38593-38612 MsG0080048694.01.T01:CDS 35.0%
AACCGTGCATAGCACTAAAT+AGG + contig404end:38570-38589 None:intergenic 40.0%
AAGGTCGTGTAATTAACACC+TGG - contig404end:38869-38888 MsG0080048694.01.T01:CDS 40.0%
AAGTTGCGGTCAATAAGGTA+GGG + contig404end:38057-38076 None:intergenic 40.0%
ACCATCAATATCTACTGGAG+GGG + contig404end:38107-38126 None:intergenic 40.0%
ACCGTGCATAGCACTAAATA+GGG + contig404end:38569-38588 None:intergenic 40.0%
ACGGTTAATAATATCAGCCC+AGG + contig404end:38890-38909 None:intergenic 40.0%
AGGTCGTGTAATTAACACCT+GGG - contig404end:38870-38889 MsG0080048694.01.T01:CDS 40.0%
CATGCATAACTTCCATACCA+AGG + contig404end:38918-38937 None:intergenic 40.0%
CGTCTTTACATTGGATGGTT+TGG - contig404end:38019-38038 MsG0080048694.01.T01:CDS 40.0%
GAAAAGCTTCCTTGACCAAT+TGG + contig404end:38427-38446 None:intergenic 40.0%
GAATATGCAACAGCAATCCA+AGG + contig404end:38364-38383 None:intergenic 40.0%
GATGAATGGTTATACAACGG+TGG - contig404end:38247-38266 MsG0080048694.01.T01:CDS 40.0%
GCTACACCTAACATGTGAAA+TGG + contig404end:38529-38548 None:intergenic 40.0%
GTAAACCAGATACCTACTAC+AGG + contig404end:38778-38797 None:intergenic 40.0%
TACAGAAGTTGCGGTCAATA+AGG + contig404end:38062-38081 None:intergenic 40.0%
TACATTTCTTCCTAGCTGCT+TGG - contig404end:38752-38771 MsG0080048694.01.T01:CDS 40.0%
TCCCTATTTAGTGCTATGCA+CGG - contig404end:38565-38584 MsG0080048694.01.T01:CDS 40.0%
TGCCATTATTCCTACTTCTG+CGG - contig404end:38180-38199 MsG0080048694.01.T01:CDS 40.0%
TTAGGTGTAGCTGGTGTATT+CGG - contig404end:38538-38557 MsG0080048694.01.T01:CDS 40.0%
TTGATCTACCCAATTGGTCA+AGG - contig404end:38415-38434 MsG0080048694.01.T01:CDS 40.0%
TTTCACATGTTAGGTGTAGC+TGG - contig404end:38529-38548 MsG0080048694.01.T01:CDS 40.0%
! AAAGTACCAGAGATTCCTAG+AGG + contig404end:38460-38479 None:intergenic 40.0%
! GTTTGCACTTTTACCCGATA+TGG - contig404end:38209-38228 MsG0080048694.01.T01:CDS 40.0%
! TTTTCAGATGGTATGCCTCT+AGG - contig404end:38442-38461 MsG0080048694.01.T01:CDS 40.0%
!! ACTTGGTGTAGCTTGTTACA+TGG - contig404end:38300-38319 MsG0080048694.01.T01:CDS 40.0%
!! CATAGTGCTGATACCTAATG+CGG + contig404end:38800-38819 None:intergenic 40.0%
!! CTTGGTGTAGCTTGTTACAT+GGG - contig404end:38301-38320 MsG0080048694.01.T01:CDS 40.0%
!! TGGGAACTTAGTTTTCGTCT+GGG - contig404end:38331-38350 MsG0080048694.01.T01:CDS 40.0%
ACGCGATAGCGAAAACCTAT+GGG - contig404end:37961-37980 MsG0080048694.01.T01:CDS 45.0%
AGCCGCAGAAGTAGGAATAA+TGG + contig404end:38185-38204 None:intergenic 45.0%
ATTCCTACTTCTGCGGCTAT+CGG - contig404end:38187-38206 MsG0080048694.01.T01:CDS 45.0%
CGCATTAGGTATCAGCACTA+TGG - contig404end:38798-38817 MsG0080048694.01.T01:CDS 45.0%
CTTCCATACCAAGGTTAGCA+CGG + contig404end:38909-38928 None:intergenic 45.0%
GAAGTTGCGGTCAATAAGGT+AGG + contig404end:38058-38077 None:intergenic 45.0%
GTCGAGGCTCCATCTATAAA+TGG - contig404end:38976-38995 MsG0080048695.01.T01:CDS 45.0%
TAACCGTGCTAACCTTGGTA+TGG - contig404end:38903-38922 MsG0080048695.01.T01:CDS 45.0%
TTGTTACATGGGTCGTGAGT+GGG - contig404end:38312-38331 MsG0080048694.01.T01:CDS 45.0%
! AAGCTGCATCCGTTGATGAA+TGG - contig404end:38233-38252 MsG0080048694.01.T01:CDS 45.0%
! AGGTTACAGATTCGGTCAAG+AGG - contig404end:38645-38664 MsG0080048694.01.T01:CDS 45.0%
! GGTATCTGGTTTACCGCATT+AGG - contig404end:38784-38803 MsG0080048694.01.T01:CDS 45.0%
! GGTCAAGGAAGCTTTTCAGA+TGG - contig404end:38430-38449 MsG0080048694.01.T01:CDS 45.0%
! GTAAAGACGGTTTTCAGTGC+TGG + contig404end:38008-38027 None:intergenic 45.0%
! GTAGCGGCTCATGGTTATTT+TGG - contig404end:38685-38704 MsG0080048694.01.T01:CDS 45.0%
!! GTGGGAACTTAGTTTTCGTC+TGG - contig404end:38330-38349 MsG0080048694.01.T01:CDS 45.0%
AAACCGATAGCCGCAGAAGT+AGG + contig404end:38193-38212 None:intergenic 50.0%
ACGGATGCAGCTTCCCATAT+CGG + contig404end:38226-38245 None:intergenic 50.0%
AGTTACAGAAGCGACCCCAT+AGG + contig404end:37979-37998 None:intergenic 50.0%
CGCGATAGCGAAAACCTATG+GGG - contig404end:37962-37981 MsG0080048694.01.T01:CDS 50.0%
CTTGGCCTGTAGTAGGTATC+TGG - contig404end:38770-38789 MsG0080048694.01.T01:CDS 50.0%
CTTGTTACATGGGTCGTGAG+TGG - contig404end:38311-38330 MsG0080048694.01.T01:CDS 50.0%
GACGCGATAGCGAAAACCTA+TGG - contig404end:37960-37979 MsG0080048694.01.T01:CDS 50.0%
GCCCCTCCAGTAGATATTGA+TGG - contig404end:38103-38122 MsG0080048694.01.T01:CDS 50.0%
GGTATTCGTGAGCCTGTTTC+TGG - contig404end:38124-38143 MsG0080048694.01.T01:CDS 50.0%
TAGTGCTATGCACGGTTCCT+TGG - contig404end:38573-38592 MsG0080048694.01.T01:CDS 50.0%
TATGGGGTCGCTTCTGTAAC+TGG - contig404end:37978-37997 MsG0080048694.01.T01:CDS 50.0%
! GGTATGCCTCTAGGAATCTC+TGG - contig404end:38451-38470 MsG0080048694.01.T01:CDS 50.0%
ACTGCAGTAGCAGCTGCAAC+AGG + contig404end:38391-38410 None:intergenic 55.0%
CGGATGCAGCTTCCCATATC+GGG + contig404end:38225-38244 None:intergenic 55.0%
CTACTACAGGCCAAGCAGCT+AGG + contig404end:38765-38784 None:intergenic 55.0%
CTAGCTGCTTGGCCTGTAGT+AGG - contig404end:38763-38782 MsG0080048694.01.T01:CDS 55.0%
CTTCCCTCTAGACCTAGCTG+CGG - contig404end:38954-38973 MsG0080048695.01.T01:CDS 55.0%
GGTGTAGCTGGTGTATTCGG+CGG - contig404end:38541-38560 MsG0080048694.01.T01:CDS 55.0%
CGACCGCAGCTAGGTCTAGA+GGG + contig404end:38960-38979 None:intergenic 60.0%
TCGACCGCAGCTAGGTCTAG+AGG + contig404end:38961-38980 None:intergenic 60.0%
TCTAGACCTAGCTGCGGTCG+AGG - contig404end:38960-38979 MsG0080048695.01.T01:CDS 60.0%
TTCGTCTGGGTATGCGCCCT+TGG - contig404end:38344-38363 MsG0080048694.01.T01:CDS 60.0%
ATGGAGCCTCGACCGCAGCT+AGG + contig404end:38969-38988 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
contig404end gene 37941 39002 37941 ID=MsG0080048695.01;Name=MsG0080048695.01
contig404end mRNA 37941 39002 37941 ID=MsG0080048695.01.T01;Parent=MsG0080048695.01;Name=MsG0080048695.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|353
contig404end exon 37941 39002 37941 ID=MsG0080048695.01.T01:exon:5352;Parent=MsG0080048695.01.T01
contig404end CDS 37941 39002 37941 ID=MsG0080048695.01.T01:cds;Parent=MsG0080048695.01.T01
Gene Sequence

>MsG0080048695.01.T01

CTGACGGCAATTTTAGAGAGACGCGATAGCGAAAACCTATGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCGGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCATTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTTAACCAATCAGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCGGTCGAGGCTCCATCTATAAATGGATAA

Protein sequence

>MsG0080048695.01.T01

LTAILERRDSENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING*