AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048697.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048697.01.T01 MTR_7g117930 76.457 429 6 4 25 358 47 475 0.0 602
MsG0080048697.01.T01 MTR_6g055010 75.991 429 8 4 25 358 47 475 0.0 599
MsG0080048697.01.T01 MTR_7g021770 75.991 429 8 4 25 358 47 475 0.0 598
MsG0080048697.01.T01 MTR_4g051270 77.805 410 15 4 25 358 47 456 0.0 590
MsG0080048697.01.T01 MTR_0002s0660 72.727 429 22 4 25 358 47 475 0.0 574
MsG0080048697.01.T01 MTR_2176s0010 78.571 224 10 2 171 356 1 224 2.20e-121 350
MsG0080048697.01.T01 MTR_3g035490 81.208 149 4 1 61 185 1 149 1.35e-77 237
MsG0080048697.01.T01 MTR_0002s0100 81.208 149 4 1 61 185 1 149 5.08e-77 237
MsG0080048697.01.T01 MTR_3g035680 74.233 163 4 2 234 358 15 177 8.89e-75 229
MsG0080048697.01.T01 MTR_7g033770 72.414 145 7 1 25 136 47 191 3.86e-53 174
MsG0080048697.01.T01 MTR_5g075460 96.154 78 3 0 53 130 92 169 1.07e-46 159
MsG0080048697.01.T01 MTR_5g087240 92.424 66 5 0 293 358 610 675 5.33e-32 127
MsG0080048697.01.T01 MTR_7g084780 84.848 33 5 0 312 344 37 69 5.17e-13 63.9
MsG0080048697.01.T01 MTR_1g059860 77.143 35 8 0 176 210 171 205 6.95e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048697.01.T01 ATCG00490 72.494 429 23 4 25 358 47 475 0.0 573
MsG0080048697.01.T01 AT2G07732 66.990 103 10 1 125 203 12 114 1.04e-37 132

Find 102 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTGTAGGTAATGTATT+TGG 0.076014 contig404end:-43442 MsG0080048697.01.T01:CDS
ATGTACTATTAAACCTAAAT+TGG 0.142926 contig404end:-43284 MsG0080048697.01.T01:CDS
TTAGCGGATAAACCCAATTT+AGG 0.252721 contig404end:+43271 None:intergenic
CCTGCTCTGACCGAGATATT+TGG 0.258934 contig404end:-42637 MsG0080048697.01.T01:CDS
AACCTTCTTCAAAAGGTCTA+AGG 0.260678 contig404end:+43485 None:intergenic
TCCTTTGATTTCACCAGTTT+CGG 0.272241 contig404end:+43109 None:intergenic
CAATTCGGTGGAGGAACTTT+AGG 0.272632 contig404end:-42598 MsG0080048697.01.T01:CDS
CAAATATGGACGTCCCCTAT+TGG 0.291092 contig404end:-43308 MsG0080048697.01.T01:CDS
AGAGATAAATTGAACAAATA+TGG 0.306170 contig404end:-43322 MsG0080048697.01.T01:CDS
AGCTGTATTTGCTAGAGAAT+TGG 0.311976 contig404end:-43039 MsG0080048697.01.T01:CDS
TGGTGTTCTGCCTGTTGCTT+CGG 0.325396 contig404end:-42683 MsG0080048697.01.T01:CDS
CCATTGTAGGTAATGTATTT+GGG 0.341419 contig404end:-43441 MsG0080048697.01.T01:CDS
CTTCGGGTGGTATTCATGTT+TGG 0.344232 contig404end:-42666 MsG0080048697.01.T01:CDS
GGTGTTCTGCCTGTTGCTTC+GGG 0.346027 contig404end:-42682 MsG0080048697.01.T01:CDS
GTTTAATAGTACATCCCAAT+AGG 0.353181 contig404end:+43293 None:intergenic
TTTAATAGTACATCCCAATA+GGG 0.371748 contig404end:+43294 None:intergenic
TCACAAGCAGCAGCTAATTC+AGG 0.373684 contig404end:+42442 None:intergenic
TAGCTGCTGCTTGTGAAGTC+TGG 0.391463 contig404end:-42435 MsG0080048697.01.T01:CDS
TCAGGATTGGGTTTCTTACC+TGG 0.392295 contig404end:-42703 MsG0080048697.01.T01:intron
TAAGTCCGCAACTGGAGTTC+CGG 0.392968 contig404end:-43669 MsG0080048697.01.T01:CDS
AATCAAATAGTATCCATTGC+TGG 0.397304 contig404end:+42391 None:intergenic
TATAAAGCACAGGCCGAAAC+TGG 0.401033 contig404end:-43122 MsG0080048697.01.T01:intron
TGTACTATTAAACCTAAATT+GGG 0.402110 contig404end:-43283 MsG0080048697.01.T01:CDS
GTTGCTTTAGTTTCTGTTTG+TGG 0.405159 contig404end:+43786 None:intergenic
AAATATGGACGTCCCCTATT+GGG 0.410878 contig404end:-43307 MsG0080048697.01.T01:CDS
TTCTTAATTCATGAGTTGTA+AGG 0.411153 contig404end:-43822 None:intergenic
AGCTAATTCAGGACTCCATT+TGG 0.412198 contig404end:+42453 None:intergenic
AGGTAATGTATTTGGGTTCA+AGG 0.415592 contig404end:-43434 MsG0080048697.01.T01:CDS
GCTCACTATTGCCGCGATAA+TGG 0.423190 contig404end:-42957 MsG0080048697.01.T01:CDS
GCTGTATTTGCTAGAGAATT+GGG 0.423593 contig404end:-43038 MsG0080048697.01.T01:CDS
AACATGTTTACCTCCATTGT+AGG 0.424333 contig404end:-43454 MsG0080048697.01.T01:CDS
GGCCTTGCGTGCTCTACGTC+TGG 0.426433 contig404end:-43413 MsG0080048697.01.T01:CDS
GTAATGCATGACTACTTAAC+CGG 0.438897 contig404end:-43005 MsG0080048697.01.T01:CDS
GTAACAGAACCTTCTTCAAA+AGG 0.439152 contig404end:+43478 None:intergenic
GATGATTCTGTACTTCAATT+CGG 0.444395 contig404end:-42613 MsG0080048697.01.T01:CDS
GACTCCATTTGGTAGCTTCA+CGG 0.453939 contig404end:+42464 None:intergenic
ACTCCAGTTGCGGACTTACT+CGG 0.454348 contig404end:+43674 None:intergenic
CCATGTCCCAGTGGAAGATT+CGG 0.455307 contig404end:+43619 None:intergenic
AGGAACTTTAGGACACCCTT+GGG 0.475375 contig404end:-42587 MsG0080048697.01.T01:CDS
TGAATACCACCCGAAGCAAC+AGG 0.476643 contig404end:+42673 None:intergenic
CTTAATTCATGAGTTGTAAG+GGG 0.478152 contig404end:-43820 None:intergenic
ATTCCGAGTAAGTCCGCAAC+TGG 0.481022 contig404end:-43677 MsG0080048697.01.T01:CDS
ATCAAATAGTATCCATTGCT+GGG 0.485651 contig404end:+42392 None:intergenic
CCAAATATCTCGGTCAGAGC+AGG 0.486091 contig404end:+42637 None:intergenic
TCAATTTATCTCTCTCAACT+TGG 0.492490 contig404end:+43332 None:intergenic
GCTTATGTTAAAACTTTCCA+AGG 0.502903 contig404end:-43370 MsG0080048697.01.T01:CDS
CCCAAATACATTACCTACAA+TGG 0.508175 contig404end:+43441 None:intergenic
CAAATTTGAATTCCCAGCAA+TGG 0.508854 contig404end:-42404 MsG0080048697.01.T01:CDS
GCTAAAGCGTTACGTATGTC+AGG 0.511089 contig404end:-42855 MsG0080048697.01.T01:CDS
GCTGCACCTGCTTCTTCAGC+CGG 0.517443 contig404end:+43650 None:intergenic
GGAGTTCCGGCTGAAGAAGC+AGG 0.517657 contig404end:-43656 MsG0080048697.01.T01:CDS
CCGAATCTTCCACTGGGACA+TGG 0.521266 contig404end:-43619 MsG0080048697.01.T01:CDS
CACCCTTGGGGAAATGCACC+TGG 0.521465 contig404end:-42574 MsG0080048697.01.T01:CDS
GAGGAACTTTAGGACACCCT+TGG 0.524326 contig404end:-42588 MsG0080048697.01.T01:CDS
ACTCGATTCGCTACGGCACC+AGG 0.531789 contig404end:+42556 None:intergenic
TTATCCGTGAAGCTACCAAA+TGG 0.532937 contig404end:-42468 MsG0080048697.01.T01:CDS
TCTTAATTCATGAGTTGTAA+GGG 0.537047 contig404end:-43821 None:intergenic
ACCTTCTTCAAAAGGTCTAA+GGG 0.539068 contig404end:+43486 None:intergenic
CGTAGCGAATCGAGTAGCTC+TGG 0.549072 contig404end:-42548 MsG0080048697.01.T01:CDS
GGATTCCGTGAGGAGGACCT+TGG 0.553871 contig404end:+43353 None:intergenic
TTCAGCCGGAACTCCAGTTG+CGG 0.557306 contig404end:+43664 None:intergenic
GAAGCAACAGGCAGAACACC+AGG 0.557758 contig404end:+42685 None:intergenic
GTAGCTGCCGAATCTTCCAC+TGG 0.558944 contig404end:-43626 MsG0080048697.01.T01:CDS
CACCAGGTGCATTTCCCCAA+GGG 0.564366 contig404end:+42572 None:intergenic
AGAATCATCTCCAAATATCT+CGG 0.567898 contig404end:+42627 None:intergenic
ATGTGTACAAGCTCGTAATG+AGG 0.569123 contig404end:-42521 MsG0080048697.01.T01:CDS
TTCCAGACGTAGAGCACGCA+AGG 0.578153 contig404end:+43411 None:intergenic
CATTATTTGAATGCTACTGC+GGG 0.580575 contig404end:-43086 MsG0080048697.01.T01:CDS
TCTGTACTTCAATTCGGTGG+AGG 0.580864 contig404end:-42607 MsG0080048697.01.T01:CDS
GCACCAGGTGCATTTCCCCA+AGG 0.582933 contig404end:+42571 None:intergenic
GTTCTGCCTGTTGCTTCGGG+TGG 0.593280 contig404end:-42679 MsG0080048697.01.T01:CDS
CAATAACTGCATGCATTGCA+CGG 0.599019 contig404end:+42916 None:intergenic
AAGTAGTCATGCATTACGAT+AGG 0.600342 contig404end:+43011 None:intergenic
TGTGTACAAGCTCGTAATGA+GGG 0.604683 contig404end:-42520 MsG0080048697.01.T01:CDS
AGTATTTGCAGTGAATCCAC+CGG 0.604695 contig404end:+42986 None:intergenic
ATTCACTGCAAATACTACCT+TGG 0.606582 contig404end:-42979 MsG0080048697.01.T01:CDS
GATTCTGTACTTCAATTCGG+TGG 0.608565 contig404end:-42610 MsG0080048697.01.T01:CDS
GGCTGAAGAAGCAGGTGCAG+CGG 0.610301 contig404end:-43648 MsG0080048697.01.T01:CDS
GGGACGTGATCTTGCTCGTG+AGG 0.610459 contig404end:-42500 MsG0080048697.01.T01:CDS
TGCTGCTTGTGAAGTCTGGA+AGG 0.612336 contig404end:-42431 MsG0080048697.01.T01:CDS
ACTTTCCAAGGTCCTCCTCA+CGG 0.616737 contig404end:-43358 MsG0080048697.01.T01:CDS
GGACGTGATCTTGCTCGTGA+GGG 0.620456 contig404end:-42499 MsG0080048697.01.T01:CDS
ATGCATGACTACTTAACCGG+TGG 0.625393 contig404end:-43002 MsG0080048697.01.T01:CDS
TTAATTCATGAGTTGTAAGG+GGG 0.626711 contig404end:-43819 None:intergenic
ACATTATTTGAATGCTACTG+CGG 0.627454 contig404end:-43087 MsG0080048697.01.T01:CDS
GCCGAAACTGGTGAAATCAA+AGG 0.632646 contig404end:-43110 MsG0080048697.01.T01:CDS
CAGAGCTACTCGATTCGCTA+CGG 0.633558 contig404end:+42549 None:intergenic
AAATACATTACCTACAATGG+AGG 0.637677 contig404end:+43444 None:intergenic
TCAACTTGGATTCCGTGAGG+AGG 0.638325 contig404end:+43346 None:intergenic
ATCGCGGCAATAGTGAGCCA+AGG 0.642206 contig404end:+42962 None:intergenic
ACAAACAGAAACTAAAGCAA+CGG 0.643993 contig404end:-43784 MsG0080048697.01.T01:intron
TTAATAGTACATCCCAATAG+GGG 0.649175 contig404end:+43295 None:intergenic
CACAGTTGTCCATGTCCCAG+TGG 0.656758 contig404end:+43610 None:intergenic
AAAGCGTTACGTATGTCAGG+TGG 0.676637 contig404end:-42852 MsG0080048697.01.T01:CDS
CTCTCAACTTGGATTCCGTG+AGG 0.676911 contig404end:+43343 None:intergenic
TAGCTGCCGAATCTTCCACT+GGG 0.676943 contig404end:-43625 MsG0080048697.01.T01:CDS
GTTTATGAATGTCTACGCGG+TGG 0.687186 contig404end:-43232 MsG0080048697.01.T01:CDS
GGTGGAGATCATATTCACGC+TGG 0.700987 contig404end:-42834 MsG0080048697.01.T01:intron
GAAGAAGTAGACCATTATCG+CGG 0.720621 contig404end:+42946 None:intergenic
GGAACTTTAGGACACCCTTG+GGG 0.727359 contig404end:-42586 MsG0080048697.01.T01:CDS
TAACTGCATGCATTGCACGG+TGG 0.746593 contig404end:+42919 None:intergenic
GCAGTTTATGAATGTCTACG+CGG 0.791999 contig404end:-43235 MsG0080048697.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGATAAATTGAACAAATA+TGG - contig404end:42883-42902 MsG0080048697.01.T01:CDS 20.0%
!! ATGTACTATTAAACCTAAAT+TGG - contig404end:42921-42940 MsG0080048697.01.T01:CDS 20.0%
!! TGTACTATTAAACCTAAATT+GGG - contig404end:42922-42941 MsG0080048697.01.T01:CDS 20.0%
! ATTGATAGACAGAAAAATCA+TGG - contig404end:43308-43327 MsG0080048697.01.T01:CDS 25.0%
! TTTAATAGTACATCCCAATA+GGG + contig404end:42914-42933 None:intergenic 25.0%
!!! AAAGTTTTAACATAAGCAAC+GGG + contig404end:42832-42851 None:intergenic 25.0%
!!! GAAAGTTTTAACATAAGCAA+CGG + contig404end:42833-42852 None:intergenic 25.0%
!!! TATTTTTTTCACTCAGGATT+GGG - contig404end:43490-43509 MsG0080048697.01.T01:CDS 25.0%
AAATACATTACCTACAATGG+AGG + contig404end:42764-42783 None:intergenic 30.0%
AACCAAAGATACTGATATCT+TGG - contig404end:42501-42520 MsG0080048697.01.T01:CDS 30.0%
ACAAACAGAAACTAAAGCAA+CGG - contig404end:42421-42440 MsG0080048697.01.T01:CDS 30.0%
ACATTATTTGAATGCTACTG+CGG - contig404end:43118-43137 MsG0080048697.01.T01:intron 30.0%
AGAATCATCTCCAAATATCT+CGG + contig404end:43581-43600 None:intergenic 30.0%
ATTGAAAAAGATAGAAGTCG+CGG - contig404end:43467-43486 MsG0080048697.01.T01:CDS 30.0%
CCATTGTAGGTAATGTATTT+GGG - contig404end:42764-42783 MsG0080048697.01.T01:intron 30.0%
GATGATTCTGTACTTCAATT+CGG - contig404end:43592-43611 MsG0080048697.01.T01:intron 30.0%
GCTTATGTTAAAACTTTCCA+AGG - contig404end:42835-42854 MsG0080048697.01.T01:CDS 30.0%
GGTTTATCCGCTAAAAATTA+CGG - contig404end:42943-42962 MsG0080048697.01.T01:CDS 30.0%
GTTTAATAGTACATCCCAAT+AGG + contig404end:42915-42934 None:intergenic 30.0%
TACAGTCTTGATCGTTATAA+AGG - contig404end:42632-42651 MsG0080048697.01.T01:CDS 30.0%
TCAATTTATCTCTCTCAACT+TGG + contig404end:42876-42895 None:intergenic 30.0%
TCCATTGTAGGTAATGTATT+TGG - contig404end:42763-42782 MsG0080048697.01.T01:intron 30.0%
TTAATAGTACATCCCAATAG+GGG + contig404end:42913-42932 None:intergenic 30.0%
! GTTCACATTTTCATCATCTT+TGG + contig404end:43010-43029 None:intergenic 30.0%
!! AAGTTTTAACATAAGCAACG+GGG + contig404end:42831-42850 None:intergenic 30.0%
!!! GTATTTTTTTCACTCAGGAT+TGG - contig404end:43489-43508 MsG0080048697.01.T01:CDS 30.0%
AACATGTTTACCTCCATTGT+AGG - contig404end:42751-42770 MsG0080048697.01.T01:intron 35.0%
AACCTTCTTCAAAAGGTCTA+AGG + contig404end:42723-42742 None:intergenic 35.0%
AAGTAGTCATGCATTACGAT+AGG + contig404end:43197-43216 None:intergenic 35.0%
ACCTTCTTCAAAAGGTCTAA+GGG + contig404end:42722-42741 None:intergenic 35.0%
ATTCACTGCAAATACTACCT+TGG - contig404end:43226-43245 MsG0080048697.01.T01:CDS 35.0%
CAAATTTGAATTCCCAGCAA+TGG - contig404end:43801-43820 MsG0080048697.01.T01:CDS 35.0%
CATTATTTGAATGCTACTGC+GGG - contig404end:43119-43138 MsG0080048697.01.T01:intron 35.0%
CCCAAATACATTACCTACAA+TGG + contig404end:42767-42786 None:intergenic 35.0%
CCTGTGCTTTATAATAGCTT+CGG + contig404end:43076-43095 None:intergenic 35.0%
CTTCGGCACAAAATAAGAAA+CGG + contig404end:43059-43078 None:intergenic 35.0%
GGAGAAAGGGATATTACTTT+AGG - contig404end:43416-43435 MsG0080048697.01.T01:CDS 35.0%
GTAACAGAACCTTCTTCAAA+AGG + contig404end:42730-42749 None:intergenic 35.0%
GTAATGCATGACTACTTAAC+CGG - contig404end:43200-43219 MsG0080048697.01.T01:intron 35.0%
TGCCAAGATATCAGTATCTT+TGG + contig404end:42506-42525 None:intergenic 35.0%
! AGCTGTATTTGCTAGAGAAT+TGG - contig404end:43166-43185 MsG0080048697.01.T01:intron 35.0%
! AGGTAATGTATTTGGGTTCA+AGG - contig404end:42771-42790 MsG0080048697.01.T01:intron 35.0%
! GCTGTATTTGCTAGAGAATT+GGG - contig404end:43167-43186 MsG0080048697.01.T01:intron 35.0%
! GTATCTTTGGTTTCATAGTC+AGG + contig404end:42493-42512 None:intergenic 35.0%
! GTTGCTTTAGTTTCTGTTTG+TGG + contig404end:42422-42441 None:intergenic 35.0%
! TCCTTTGATTTCACCAGTTT+CGG + contig404end:43099-43118 None:intergenic 35.0%
! TTAGCGGATAAACCCAATTT+AGG + contig404end:42937-42956 None:intergenic 35.0%
!! TGCTCTACCGTAATTTTTAG+CGG + contig404end:42953-42972 None:intergenic 35.0%
AAATATGGACGTCCCCTATT+GGG - contig404end:42898-42917 MsG0080048697.01.T01:CDS 40.0%
ACAGAAACTAAAGCAACGGT+TGG - contig404end:42425-42444 MsG0080048697.01.T01:CDS 40.0%
ACTGTAGTAGGTAAACTGGA+AGG - contig404end:43395-43414 MsG0080048697.01.T01:CDS 40.0%
AGCTAATTCAGGACTCCATT+TGG + contig404end:43755-43774 None:intergenic 40.0%
AGGTAAACTGGAAGGAGAAA+GGG - contig404end:43403-43422 MsG0080048697.01.T01:CDS 40.0%
AGTATTTGCAGTGAATCCAC+CGG + contig404end:43222-43241 None:intergenic 40.0%
ATGTGTACAAGCTCGTAATG+AGG - contig404end:43684-43703 MsG0080048697.01.T01:intron 40.0%
CAATAACTGCATGCATTGCA+CGG + contig404end:43292-43311 None:intergenic 40.0%
CAGAAACTAAAGCAACGGTT+GGG - contig404end:42426-42445 MsG0080048697.01.T01:CDS 40.0%
CCGAAGCTATTATAAAGCAC+AGG - contig404end:43073-43092 MsG0080048697.01.T01:CDS 40.0%
GAAGAAGTAGACCATTATCG+CGG + contig404end:43262-43281 None:intergenic 40.0%
GATCAAGACTGTAAGTCCAT+CGG + contig404end:42625-42644 None:intergenic 40.0%
GATTCTGTACTTCAATTCGG+TGG - contig404end:43595-43614 MsG0080048697.01.T01:intron 40.0%
GCAGTTTATGAATGTCTACG+CGG - contig404end:42970-42989 MsG0080048697.01.T01:CDS 40.0%
TAGGTAAACTGGAAGGAGAA+AGG - contig404end:43402-43421 MsG0080048697.01.T01:CDS 40.0%
TCTCCAACGCATAAATGGTT+GGG + contig404end:43034-43053 None:intergenic 40.0%
TGGTACTGTAGTAGGTAAAC+TGG - contig404end:43391-43410 MsG0080048697.01.T01:CDS 40.0%
TGTGTACAAGCTCGTAATGA+GGG - contig404end:43685-43704 MsG0080048697.01.T01:intron 40.0%
TTATCCGTGAAGCTACCAAA+TGG - contig404end:43737-43756 MsG0080048697.01.T01:intron 40.0%
!! TCCCTTAGACCTTTTGAAGA+AGG - contig404end:42718-42737 MsG0080048697.01.T01:intron 40.0%
!!! TCGCGGTATTTTTTTCACTC+AGG - contig404end:43484-43503 MsG0080048697.01.T01:CDS 40.0%
ACTCCCAACCATTTATGCGT+TGG - contig404end:43028-43047 MsG0080048697.01.T01:CDS 45.0%
ATGCATGACTACTTAACCGG+TGG - contig404end:43203-43222 MsG0080048697.01.T01:intron 45.0%
ATTCACGCTGGTACTGTAGT+AGG - contig404end:43383-43402 MsG0080048697.01.T01:CDS 45.0%
CAAATATGGACGTCCCCTAT+TGG - contig404end:42897-42916 MsG0080048697.01.T01:CDS 45.0%
CTCTCCAACGCATAAATGGT+TGG + contig404end:43035-43054 None:intergenic 45.0%
CTTCGGGTGGTATTCATGTT+TGG - contig404end:43539-43558 MsG0080048697.01.T01:intron 45.0%
GCCGAAACTGGTGAAATCAA+AGG - contig404end:43095-43114 MsG0080048697.01.T01:CDS 45.0%
GTTTATGAATGTCTACGCGG+TGG - contig404end:42973-42992 MsG0080048697.01.T01:CDS 45.0%
TATAAAGCACAGGCCGAAAC+TGG - contig404end:43083-43102 MsG0080048697.01.T01:CDS 45.0%
TCACAAGCAGCAGCTAATTC+AGG + contig404end:43766-43785 None:intergenic 45.0%
TCAGGATTGGGTTTCTTACC+TGG - contig404end:43502-43521 MsG0080048697.01.T01:intron 45.0%
! AAAGCGTTACGTATGTCAGG+TGG - contig404end:43353-43372 MsG0080048697.01.T01:CDS 45.0%
! CAATTCGGTGGAGGAACTTT+AGG - contig404end:43607-43626 MsG0080048697.01.T01:intron 45.0%
! GACTCCATTTGGTAGCTTCA+CGG + contig404end:43744-43763 None:intergenic 45.0%
! GCTAAAGCGTTACGTATGTC+AGG - contig404end:43350-43369 MsG0080048697.01.T01:CDS 45.0%
! TCTGTACTTCAATTCGGTGG+AGG - contig404end:43598-43617 MsG0080048697.01.T01:intron 45.0%
!! AGGAACTTTAGGACACCCTT+GGG - contig404end:43618-43637 MsG0080048697.01.T01:CDS 45.0%
ACTCCAGTTGCGGACTTACT+CGG + contig404end:42534-42553 None:intergenic 50.0%
ACTTTCCAAGGTCCTCCTCA+CGG - contig404end:42847-42866 MsG0080048697.01.T01:CDS 50.0%
ATTCCGAGTAAGTCCGCAAC+TGG - contig404end:42528-42547 MsG0080048697.01.T01:CDS 50.0%
CCAAATATCTCGGTCAGAGC+AGG + contig404end:43571-43590 None:intergenic 50.0%
CCATGTCCCAGTGGAAGATT+CGG + contig404end:42589-42608 None:intergenic 50.0%
CCTGCTCTGACCGAGATATT+TGG - contig404end:43568-43587 MsG0080048697.01.T01:intron 50.0%
CGGTCTCTCCAACGCATAAA+TGG + contig404end:43039-43058 None:intergenic 50.0%
CTCTCAACTTGGATTCCGTG+AGG + contig404end:42865-42884 None:intergenic 50.0%
GCTCACTATTGCCGCGATAA+TGG - contig404end:43248-43267 MsG0080048697.01.T01:CDS 50.0%
GGTGGAGATCATATTCACGC+TGG - contig404end:43371-43390 MsG0080048697.01.T01:CDS 50.0%
TAACTGCATGCATTGCACGG+TGG + contig404end:43289-43308 None:intergenic 50.0%
TAAGTCCGCAACTGGAGTTC+CGG - contig404end:42536-42555 MsG0080048697.01.T01:CDS 50.0%
TACCACATCGAACCTGTTGC+TGG - contig404end:42662-42681 MsG0080048697.01.T01:CDS 50.0%
TAGCTGCCGAATCTTCCACT+GGG - contig404end:42580-42599 MsG0080048697.01.T01:CDS 50.0%
TCAACTTGGATTCCGTGAGG+AGG + contig404end:42862-42881 None:intergenic 50.0%
TGAATACCACCCGAAGCAAC+AGG + contig404end:43535-43554 None:intergenic 50.0%
TGAGTCTCTTCTCCAGCAAC+AGG + contig404end:42677-42696 None:intergenic 50.0%
! CAGAGCTACTCGATTCGCTA+CGG + contig404end:43659-43678 None:intergenic 50.0%
! TAGCTGCTGCTTGTGAAGTC+TGG - contig404end:43770-43789 MsG0080048697.01.T01:intron 50.0%
! TGCTGCTTGTGAAGTCTGGA+AGG - contig404end:43774-43793 MsG0080048697.01.T01:intron 50.0%
! TGGTGTTCTGCCTGTTGCTT+CGG - contig404end:43522-43541 MsG0080048697.01.T01:intron 50.0%
!! GAGGAACTTTAGGACACCCT+TGG - contig404end:43617-43636 MsG0080048697.01.T01:CDS 50.0%
!! GGAACTTTAGGACACCCTTG+GGG - contig404end:43619-43638 MsG0080048697.01.T01:CDS 50.0%
ATCGCGGCAATAGTGAGCCA+AGG + contig404end:43246-43265 None:intergenic 55.0%
CACAGTTGTCCATGTCCCAG+TGG + contig404end:42598-42617 None:intergenic 55.0%
CACCAGGTGCATTTCCCCAA+GGG + contig404end:43636-43655 None:intergenic 55.0%
CCGAATCTTCCACTGGGACA+TGG - contig404end:42586-42605 MsG0080048697.01.T01:CDS 55.0%
CGTAGCGAATCGAGTAGCTC+TGG - contig404end:43657-43676 MsG0080048697.01.T01:CDS 55.0%
CTCCAGCAACAGGTTCGATG+TGG + contig404end:42667-42686 None:intergenic 55.0%
CTGGGACATGGACAACTGTG+TGG - contig404end:42598-42617 MsG0080048697.01.T01:CDS 55.0%
GAAGCAACAGGCAGAACACC+AGG + contig404end:43523-43542 None:intergenic 55.0%
GCAACGGTTGGGTTCAAAGC+TGG - contig404end:42437-42456 MsG0080048697.01.T01:CDS 55.0%
GGACGTGATCTTGCTCGTGA+GGG - contig404end:43706-43725 MsG0080048697.01.T01:intron 55.0%
GTAGCTGCCGAATCTTCCAC+TGG - contig404end:42579-42598 MsG0080048697.01.T01:CDS 55.0%
TGGACAACTGTGTGGACCGA+TGG - contig404end:42606-42625 MsG0080048697.01.T01:CDS 55.0%
TTCAGCCGGAACTCCAGTTG+CGG + contig404end:42544-42563 None:intergenic 55.0%
TTCCAGACGTAGAGCACGCA+AGG + contig404end:42797-42816 None:intergenic 55.0%
! GGTGTTCTGCCTGTTGCTTC+GGG - contig404end:43523-43542 MsG0080048697.01.T01:intron 55.0%
CACCCTTGGGGAAATGCACC+TGG - contig404end:43631-43650 MsG0080048697.01.T01:CDS 60.0%
GCACCAGGTGCATTTCCCCA+AGG + contig404end:43637-43656 None:intergenic 60.0%
GCTGCACCTGCTTCTTCAGC+CGG + contig404end:42558-42577 None:intergenic 60.0%
GGAGTTCCGGCTGAAGAAGC+AGG - contig404end:42549-42568 MsG0080048697.01.T01:CDS 60.0%
GGATTCCGTGAGGAGGACCT+TGG + contig404end:42855-42874 None:intergenic 60.0%
GGCTGAAGAAGCAGGTGCAG+CGG - contig404end:42557-42576 MsG0080048697.01.T01:CDS 60.0%
GGGACGTGATCTTGCTCGTG+AGG - contig404end:43705-43724 MsG0080048697.01.T01:intron 60.0%
! ACTCGATTCGCTACGGCACC+AGG + contig404end:43652-43671 None:intergenic 60.0%
! GTTCTGCCTGTTGCTTCGGG+TGG - contig404end:43526-43545 MsG0080048697.01.T01:intron 60.0%
GGCCTTGCGTGCTCTACGTC+TGG - contig404end:42792-42811 MsG0080048697.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig404end gene 42393 43834 42393 ID=MsG0080048697.01;Name=MsG0080048697.01
contig404end mRNA 42393 43834 42393 ID=MsG0080048697.01.T01;Parent=MsG0080048697.01;Name=MsG0080048697.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|5|0|358
contig404end exon 43785 43834 43785 ID=MsG0080048697.01.T01:exon:5357;Parent=MsG0080048697.01.T01
contig404end exon 43611 43700 43611 ID=MsG0080048697.01.T01:exon:5356;Parent=MsG0080048697.01.T01
contig404end exon 43204 43513 43204 ID=MsG0080048697.01.T01:exon:5355;Parent=MsG0080048697.01.T01
contig404end exon 42835 43132 42835 ID=MsG0080048697.01.T01:exon:5354;Parent=MsG0080048697.01.T01
contig404end exon 42393 42721 42393 ID=MsG0080048697.01.T01:exon:5353;Parent=MsG0080048697.01.T01
contig404end CDS 43785 43834 43785 ID=MsG0080048697.01.T01:cds;Parent=MsG0080048697.01.T01
contig404end CDS 43611 43700 43611 ID=MsG0080048697.01.T01:cds;Parent=MsG0080048697.01.T01
contig404end CDS 43204 43513 43204 ID=MsG0080048697.01.T01:cds;Parent=MsG0080048697.01.T01
contig404end CDS 42835 43132 42835 ID=MsG0080048697.01.T01:cds;Parent=MsG0080048697.01.T01
contig404end CDS 42393 42721 42393 ID=MsG0080048697.01.T01:cds;Parent=MsG0080048697.01.T01
Gene Sequence

>MsG0080048697.01.T01

ATGAGTTGTAAGGGGGATTTATGTCACCACAAACAGAAACTAAAGCAACGCATTCCGAGTAAGTCCGCAACTGGAGTTCCGGCTGAAGAAGCAGGTGCAGCGGTAGCTGCCGAATCTTCCACTGGGACATGGACAACTGTCTTATCCCTTAGACCTTTTGAAGAAGGTTCTGTTACTAACATGTTTACCTCCATTGTAGGTAATGTATTTGGGTTCAAGGCCTTGCGTGCTCTACGTCTGGAAGATTTGCGAATCCCCGTTGCTTATGTTAAAACTTTCCAAGGTCCTCCTCACGGAATCCAAGTTGAGAGAGATAAATTGAACAAATATGGACGTCCCCTATTGGGATGTACTATTAAACCTAAATTGGGTTTATCCGCTAAAAATTACGGTAGAGCAGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAATGCCGAAACTGGTGAAATCAAAGGACATTATTTGAATGCTACTGCGGGCACAGTTGACGATATGATGAAAAGAGCTGTATTTGCTAGAGAATTGGGCGTGCCTATCGTAATGCATGACTACTTAACCGGTGGATTCACTGCAAATACTACCTTGGCTCACTATTGCCGCGATAATGGTCTACTTCTTCATATCCACCGTGCAATGCATGCAGTTATTGATAGACAGAAAAATCATGGTATGCACTTTCGTGTATTAGCTAAAGCGTTACGTATGTCAGGTGGAGATCATATTCACGCTGGATTGGGTTTCTTACCTGGTGTTCTGCCTGTTGCTTCGGGTGGTATTCATGTTTGGCATATGCCTGCTCTGACCGAGATATTTGGAGATGATTCTGTACTTCAATTCGGTGGAGGAACTTTAGGACACCCTTGGGGAAATGCACCTGGTGCCGTAGCGAATCGAGTAGCTCTGGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAAGCTACCAAATGGAGTCCTGAATTAGCTGCTGCTTGTGAAGTCTGGAAGGAGATCAAATTTGAATTCCCAGCAATGGATACTATTTGA

Protein sequence

>MsG0080048697.01.T01

MSCKGDLCHHKQKLKQRIPSKSATGVPAEEAGAAVAAESSTGTWTTVLSLRPFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPVAYVKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENAETGEIKGHYLNATAGTVDDMMKRAVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGLGFLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI*