Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048698.01.T01 | QJQ75543.1 | 96.732 | 153 | 5 | 0 | 1 | 153 | 79 | 231 | 1.36E-96 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048698.01.T01 | Q9TKI7 | 96.732 | 153 | 5 | 0 | 1 | 153 | 79 | 231 | 3.55E-99 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048698.01.T01 | A0A6M4E2F2 | 96.732 | 153 | 5 | 0 | 1 | 153 | 79 | 231 | 6.51e-97 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047967.01 | MsG0080048698.01 | 0.806276 | 8.898670e-50 | 4.810194e-47 |
| MsG0080048313.01 | MsG0080048698.01 | 0.827787 | 1.290109e-54 | 1.258093e-51 |
| MsG0080048560.01 | MsG0080048698.01 | 0.833954 | 3.962580e-56 | 4.634999e-53 |
| MsG0080048689.01 | MsG0080048698.01 | 0.816598 | 5.090880e-52 | 3.623154e-49 |
| MsG0080048690.01 | MsG0080048698.01 | 0.870496 | 1.396580e-66 | 5.444094e-63 |
| MsG0080048691.01 | MsG0080048698.01 | 0.852265 | 5.171627e-61 | 1.074758e-57 |
| MsG0080048692.01 | MsG0080048698.01 | 0.908676 | 1.317714e-81 | 2.472928e-77 |
| MsG0080048693.01 | MsG0080048698.01 | 0.852255 | 5.206154e-61 | 1.081537e-57 |
| MsG0080048694.01 | MsG0080048698.01 | 0.819024 | 1.442979e-52 | 1.097845e-49 |
| MsG0080048695.01 | MsG0080048698.01 | 0.818431 | 1.967697e-52 | 1.472678e-49 |
| MsG0080048697.01 | MsG0080048698.01 | 0.820172 | 7.891841e-53 | 6.198999e-50 |
| MsG0080048698.01 | MsG0080048699.01 | 0.950091 | 3.364311e-108 | 6.990070e-103 |
| MsG0080048698.01 | MsG0080048813.01 | 0.829010 | 6.537905e-55 | 6.607236e-52 |
| MsG0080048698.01 | MsG0080049076.01 | 0.861360 | 1.083554e-63 | 3.058358e-60 |
| MsG0080048698.01 | MsG0180001072.01 | 0.805708 | 1.171724e-49 | 6.242668e-47 |
| MsG0080048698.01 | MsG0180001110.01 | 0.807193 | 5.696280e-50 | 3.152601e-47 |
| MsG0080048698.01 | MsG0180001925.01 | 0.827711 | 1.345211e-54 | 1.309001e-51 |
| MsG0080048698.01 | MsG0180002214.01 | 0.802120 | 6.522856e-49 | 3.169353e-46 |
| MsG0080048698.01 | MsG0180002226.01 | 0.841980 | 3.418817e-58 | 5.109447e-55 |
| MsG0080048698.01 | MsG0180002435.01 | 0.803383 | 3.578168e-49 | 1.795530e-46 |
| MsG0080048698.01 | MsG0180002439.01 | 0.805058 | 1.603485e-49 | 8.400963e-47 |
| MsG0080048698.01 | MsG0180002546.01 | 0.813895 | 2.030217e-51 | 1.342382e-48 |
| MsG0080048698.01 | MsG0180004301.01 | 0.835122 | 2.016133e-56 | 2.441981e-53 |
| MsG0080048698.01 | MsG0180004434.01 | 0.833631 | 4.773442e-56 | 5.528797e-53 |
| MsG0080048698.01 | MsG0180004435.01 | 0.877906 | 4.314807e-69 | 2.208097e-65 |
| MsG0080048698.01 | MsG0180004505.01 | 0.804582 | 2.015387e-49 | 1.043010e-46 |
| MsG0080048698.01 | MsG0180004761.01 | 0.827360 | 1.633562e-54 | 1.573690e-51 |
| MsG0080048698.01 | MsG0180004957.01 | 0.806113 | 9.628225e-50 | 5.182868e-47 |
| MsG0080048698.01 | MsG0180005791.01 | 0.846775 | 1.757692e-59 | 3.058585e-56 |
| MsG0080048698.01 | MsG0280006475.01 | 0.837078 | 6.427448e-57 | 8.256753e-54 |
| MsG0080048698.01 | MsG0280007042.01 | 0.819079 | 1.401878e-52 | 1.068078e-49 |
| MsG0080048698.01 | MsG0280009971.01 | -0.864613 | 1.072057e-64 | 3.387138e-61 |
| MsG0080048698.01 | MsG0280010137.01 | 0.846012 | 2.837107e-59 | 4.816705e-56 |
| MsG0080048698.01 | MsG0280010142.01 | 0.809083 | 2.254554e-50 | 1.311242e-47 |
| MsG0080048698.01 | MsG0280010144.01 | 0.800148 | 1.651183e-48 | 7.631810e-46 |
| MsG0080048698.01 | MsG0280010145.01 | 0.965332 | 1.814227e-124 | 1.137787e-118 |
| MsG0080048698.01 | MsG0280010625.01 | 0.811120 | 8.207035e-51 | 5.037713e-48 |
| MsG0080048698.01 | MsG0280010695.01 | 0.841551 | 4.436627e-58 | 6.542193e-55 |
| MsG0080048698.01 | MsG0380013448.01 | 0.896905 | 2.353465e-76 | 2.597490e-72 |
| MsG0080048698.01 | MsG0380013888.01 | 0.868766 | 5.116181e-66 | 1.872978e-62 |
| MsG0080048698.01 | MsG0380013890.01 | 0.812658 | 3.794865e-51 | 2.426851e-48 |
| MsG0080048698.01 | MsG0380013892.01 | 0.817075 | 3.980103e-52 | 2.869821e-49 |
| MsG0080048698.01 | MsG0380013914.01 | 0.805787 | 1.127569e-49 | 6.019376e-47 |
| MsG0080048698.01 | MsG0380013916.01 | 0.907934 | 2.961773e-81 | 5.371182e-77 |
| MsG0080048698.01 | MsG0380013917.01 | 0.915682 | 4.404917e-85 | 1.165525e-80 |
| MsG0080048698.01 | MsG0380013918.01 | 0.859565 | 3.788807e-63 | 1.004922e-59 |
| MsG0080048698.01 | MsG0380013919.01 | 0.810790 | 9.675428e-51 | 5.887374e-48 |
| MsG0080048698.01 | MsG0380013920.01 | 0.897883 | 9.124174e-77 | 1.052118e-72 |
| MsG0080048698.01 | MsG0380013921.01 | 0.811391 | 7.168431e-51 | 4.431720e-48 |
| MsG0080048698.01 | MsG0380013923.01 | 0.886674 | 2.785780e-72 | 2.009112e-68 |
| MsG0080048698.01 | MsG0380013926.01 | 0.892865 | 1.069540e-74 | 9.951720e-71 |
| MsG0080048698.01 | MsG0380013928.01 | 0.815157 | 1.067208e-51 | 7.301132e-49 |
| MsG0080048698.01 | MsG0380013929.01 | 0.910637 | 1.499042e-82 | 3.090493e-78 |
| MsG0080048698.01 | MsG0380013931.01 | 0.938354 | 7.735549e-99 | 7.420456e-94 |
| MsG0080048698.01 | MsG0380013932.01 | 0.863964 | 1.708915e-64 | 5.276613e-61 |
| MsG0080048698.01 | MsG0380013934.01 | 0.801696 | 7.973147e-49 | 3.832374e-46 |
| MsG0080048698.01 | MsG0380013935.01 | 0.822980 | 1.771762e-53 | 1.506005e-50 |
| MsG0080048698.01 | MsG0380013940.01 | 0.878300 | 3.138601e-69 | 1.630240e-65 |
| MsG0080048698.01 | MsG0380013941.01 | 0.892706 | 1.239286e-74 | 1.145573e-70 |
| MsG0080048698.01 | MsG0380013942.01 | 0.966195 | 1.345206e-125 | 9.135947e-120 |
| MsG0080048698.01 | MsG0380013943.01 | 0.887863 | 9.812554e-73 | 7.423101e-69 |
| MsG0080048698.01 | MsG0380013944.01 | 0.916876 | 1.049906e-85 | 2.947209e-81 |
| MsG0080048698.01 | MsG0380013945.01 | 0.886727 | 2.659179e-72 | 1.921742e-68 |
| MsG0080048698.01 | MsG0380013947.01 | 0.823930 | 1.062629e-53 | 9.277888e-51 |
| MsG0080048698.01 | MsG0380013948.01 | 0.898883 | 3.427642e-77 | 4.132376e-73 |
| MsG0080048698.01 | MsG0380013949.01 | 0.811707 | 6.117976e-51 | 3.813966e-48 |
| MsG0080048698.01 | MsG0380013951.01 | 0.933510 | 1.681265e-95 | 1.200599e-90 |
| MsG0080048698.01 | MsG0380013952.01 | 0.926099 | 7.461239e-91 | 3.454342e-86 |
| MsG0080048698.01 | MsG0380013953.01 | 0.877382 | 6.573632e-69 | 3.298989e-65 |
| MsG0080048698.01 | MsG0380013954.01 | 0.815715 | 8.021966e-52 | 5.573107e-49 |
| MsG0080048698.01 | MsG0380013956.01 | 0.858525 | 7.758245e-63 | 1.985809e-59 |
| MsG0080048698.01 | MsG0380013957.01 | 0.887780 | 1.056268e-72 | 7.966610e-69 |
| MsG0080048698.01 | MsG0380013959.01 | 0.801037 | 1.087881e-48 | 5.143294e-46 |
| MsG0080048698.01 | MsG0380013961.01 | 0.837002 | 6.721186e-57 | 8.615353e-54 |
| MsG0080048698.01 | MsG0380013962.01 | 0.867023 | 1.857249e-65 | 6.388751e-62 |
| MsG0080048698.01 | MsG0380013964.01 | 0.826267 | 2.979270e-54 | 2.780460e-51 |
| MsG0080048698.01 | MsG0380013966.01 | 0.930756 | 1.029304e-93 | 6.232737e-89 |
| MsG0080048698.01 | MsG0380013967.01 | 0.889366 | 2.583157e-73 | 2.078128e-69 |
| MsG0080048698.01 | MsG0380013968.01 | 0.929577 | 5.691568e-93 | 3.205172e-88 |
| MsG0080048698.01 | MsG0380013969.01 | 0.923114 | 4.064855e-89 | 1.597803e-84 |
| MsG0080048698.01 | MsG0380013971.01 | 0.881101 | 3.175411e-70 | 1.836046e-66 |
| MsG0080048698.01 | MsG0380013972.01 | 0.911170 | 8.231360e-83 | 1.741862e-78 |
| MsG0080048698.01 | MsG0380013975.01 | 0.851672 | 7.618486e-61 | 1.553620e-57 |
| MsG0080048698.01 | MsG0380013977.01 | 0.893517 | 5.839310e-75 | 5.580000e-71 |
| MsG0080048698.01 | MsG0380013978.01 | 0.822266 | 2.596897e-53 | 2.162994e-50 |
| MsG0080048698.01 | MsG0380013981.01 | 0.886775 | 2.550383e-72 | 1.846474e-68 |
| MsG0080048698.01 | MsG0380013983.01 | 0.845046 | 5.184808e-59 | 8.533449e-56 |
| MsG0080048698.01 | MsG0380013986.01 | 0.801900 | 7.240241e-49 | 3.498409e-46 |
| MsG0080048698.01 | MsG0380013995.01 | 0.879846 | 8.926642e-70 | 4.916216e-66 |
| MsG0080048698.01 | MsG0380013997.01 | 0.809195 | 2.133506e-50 | 1.244606e-47 |
| MsG0080048698.01 | MsG0380013999.01 | 0.865689 | 4.921855e-65 | 1.615814e-61 |
| MsG0080048698.01 | MsG0380014004.01 | 0.858124 | 1.021900e-62 | 2.580707e-59 |
| MsG0080048698.01 | MsG0380014005.01 | 0.886350 | 3.690691e-72 | 2.626710e-68 |
| MsG0080048698.01 | MsG0380014006.01 | 0.873639 | 1.258179e-67 | 5.499054e-64 |
| MsG0080048698.01 | MsG0380014008.01 | 0.899949 | 1.192899e-77 | 1.508520e-73 |
| MsG0080048698.01 | MsG0380014011.01 | 0.823310 | 1.483623e-53 | 1.272802e-50 |
| MsG0080048698.01 | MsG0380014017.01 | 0.860814 | 1.589160e-63 | 4.400575e-60 |
| MsG0080048698.01 | MsG0380014018.01 | 0.942198 | 1.098566e-101 | 1.354189e-96 |
| MsG0080048698.01 | MsG0380014020.01 | 0.845014 | 5.287793e-59 | 8.693413e-56 |
| MsG0080048698.01 | MsG0380014021.01 | 0.841334 | 5.061792e-58 | 7.412875e-55 |
| MsG0080048698.01 | MsG0380014023.01 | 0.942220 | 1.056843e-101 | 1.304177e-96 |
| MsG0080048698.01 | MsG0380014026.01 | 0.905708 | 3.227205e-80 | 5.284699e-76 |
| MsG0080048698.01 | MsG0380014029.01 | 0.816032 | 6.816305e-52 | 4.776652e-49 |
| MsG0080048698.01 | MsG0380014030.01 | 0.822710 | 2.047644e-53 | 1.727223e-50 |
| MsG0080048698.01 | MsG0380014031.01 | 0.808705 | 2.715602e-50 | 1.563528e-47 |
| MsG0080048698.01 | MsG0380014032.01 | 0.884895 | 1.296725e-71 | 8.710018e-68 |
| MsG0080048698.01 | MsG0380014033.01 | 0.908448 | 1.690992e-81 | 3.139479e-77 |
| MsG0080048698.01 | MsG0380014034.01 | 0.842899 | 1.950147e-58 | 2.999696e-55 |
| MsG0080048698.01 | MsG0380014035.01 | 0.827076 | 1.909930e-54 | 1.824519e-51 |
| MsG0080048698.01 | MsG0380014036.01 | 0.871585 | 6.111897e-67 | 2.478868e-63 |
| MsG0080048698.01 | MsG0380014039.01 | 0.903476 | 3.336448e-79 | 4.947776e-75 |
| MsG0080048698.01 | MsG0380014040.01 | 0.905864 | 2.732693e-80 | 4.510659e-76 |
| MsG0080048698.01 | MsG0380014044.01 | 0.853181 | 2.830750e-61 | 6.063805e-58 |
| MsG0080048698.01 | MsG0380014050.01 | 0.808433 | 3.104310e-50 | 1.774813e-47 |
| MsG0080048698.01 | MsG0380014051.01 | 0.927350 | 1.328907e-91 | 6.600141e-87 |
| MsG0080048698.01 | MsG0380014057.01 | 0.891346 | 4.318237e-74 | 3.772464e-70 |
| MsG0080048698.01 | MsG0380015095.01 | 0.801737 | 7.818442e-49 | 3.761956e-46 |
| MsG0080048698.01 | MsG0380015348.01 | 0.846797 | 1.733191e-59 | 3.018028e-56 |
| MsG0080048698.01 | MsG0380015697.01 | 0.810659 | 1.032763e-50 | 6.262234e-48 |
| MsG0080048698.01 | MsG0380016881.01 | 0.804680 | 1.923260e-49 | 9.978585e-47 |
| MsG0080048698.01 | MsG0380017007.01 | 0.935870 | 4.290291e-97 | 3.540063e-92 |
| MsG0080048698.01 | MsG0380017405.01 | 0.802455 | 5.564791e-49 | 2.727135e-46 |
| MsG0080048698.01 | MsG0480018296.01 | 0.916451 | 1.753261e-85 | 4.824395e-81 |
| MsG0080048698.01 | MsG0480019975.01 | 0.803637 | 3.170371e-49 | 1.601337e-46 |
| MsG0080048698.01 | MsG0480020052.01 | 0.847790 | 9.255690e-60 | 1.663557e-56 |
| MsG0080048698.01 | MsG0480021054.01 | 0.810520 | 1.106487e-50 | 6.684252e-48 |
| MsG0080048698.01 | MsG0480021327.01 | 0.816737 | 4.738978e-52 | 3.385506e-49 |
| MsG0080048698.01 | MsG0480021331.01 | 0.834537 | 2.830990e-56 | 3.369760e-53 |
| MsG0080048698.01 | MsG0480021476.01 | 0.825533 | 4.450796e-54 | 4.067785e-51 |
| MsG0080048698.01 | MsG0480022591.01 | 0.818608 | 1.793679e-52 | 1.348887e-49 |
| MsG0080048698.01 | MsG0480023006.01 | 0.801537 | 8.594125e-49 | 4.114464e-46 |
| MsG0080048698.01 | MsG0580024570.01 | 0.834382 | 3.096353e-56 | 3.668379e-53 |
| MsG0080048698.01 | MsG0580027677.01 | 0.886855 | 2.377014e-72 | 1.726563e-68 |
| MsG0080048698.01 | MsG0580029583.01 | -0.804636 | 1.963821e-49 | 1.017728e-46 |
| MsG0080048698.01 | MsG0680030439.01 | 0.818737 | 1.676595e-52 | 1.265380e-49 |
| MsG0080048698.01 | MsG0780038197.01 | 0.879065 | 1.688253e-69 | 9.024593e-66 |
| MsG0080048698.01 | MsG0780040316.01 | 0.869779 | 2.397321e-66 | 9.104984e-63 |
| MsG0080048698.01 | MsG0780040317.01 | 0.838250 | 3.214954e-57 | 4.281044e-54 |
| MsG0080048698.01 | MsG0880042291.01 | 0.822409 | 2.406149e-53 | 2.012391e-50 |
| MsG0080048698.01 | MsG0880044440.01 | 0.826844 | 2.170331e-54 | 2.059141e-51 |
| MsG0080048698.01 | MsG0880045097.01 | 0.803787 | 2.951388e-49 | 1.496512e-46 |
| MsG0080048698.01 | MsG0880045188.01 | 0.818714 | 1.697196e-52 | 1.280100e-49 |
| MsG0080048698.01 | MsG0880045630.01 | 0.886136 | 4.445010e-72 | 3.136543e-68 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048698.01.T01 | MTR_6g055020 | 95.425 | 153 | 7 | 0 | 1 | 153 | 79 | 231 | 4.32e-91 | 266 |
| MsG0080048698.01.T01 | MTR_7g117920 | 94.771 | 153 | 8 | 0 | 1 | 153 | 79 | 231 | 6.75e-90 | 264 |
| MsG0080048698.01.T01 | MTR_7g033765 | 95.425 | 153 | 7 | 0 | 1 | 153 | 79 | 231 | 1.34e-88 | 269 |
| MsG0080048698.01.T01 | MTR_7g021780 | 95.425 | 153 | 7 | 0 | 1 | 153 | 79 | 231 | 2.56e-88 | 269 |
| MsG0080048698.01.T01 | MTR_4g451275 | 94.771 | 153 | 8 | 0 | 1 | 153 | 79 | 231 | 8.07e-88 | 265 |
| MsG0080048698.01.T01 | MTR_3g035730 | 94.118 | 153 | 9 | 0 | 1 | 153 | 79 | 231 | 3.25e-87 | 263 |
| MsG0080048698.01.T01 | MTR_0002s0650 | 91.503 | 153 | 13 | 0 | 1 | 153 | 79 | 231 | 3.20e-85 | 261 |
| MsG0080048698.01.T01 | MTR_1g108765 | 73.103 | 145 | 39 | 0 | 1 | 145 | 138 | 282 | 1.81e-66 | 211 |
| MsG0080048698.01.T01 | MTR_1g108770 | 71.724 | 145 | 41 | 0 | 1 | 145 | 141 | 285 | 5.10e-65 | 207 |
| MsG0080048698.01.T01 | MTR_7g033755 | 71.242 | 153 | 11 | 1 | 1 | 153 | 40 | 159 | 4.16e-62 | 198 |
| MsG0080048698.01.T01 | MTR_4g010980 | 97.260 | 73 | 2 | 0 | 1 | 73 | 76 | 148 | 8.11e-45 | 144 |
| MsG0080048698.01.T01 | MTR_2g066870 | 52.419 | 124 | 59 | 0 | 22 | 145 | 29 | 152 | 1.73e-39 | 138 |
| MsG0080048698.01.T01 | MTR_0212s0040 | 34.615 | 104 | 68 | 0 | 7 | 110 | 84 | 187 | 4.13e-11 | 60.5 |
| MsG0080048698.01.T01 | MTR_0002s0550 | 28.571 | 147 | 102 | 2 | 5 | 149 | 79 | 224 | 4.82e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048698.01.T01 | ATCG00480 | 91.503 | 153 | 13 | 0 | 1 | 153 | 79 | 231 | 2.22e-86 | 261 |
| MsG0080048698.01.T01 | AT5G08690 | 73.793 | 145 | 38 | 0 | 1 | 145 | 138 | 282 | 5.76e-66 | 210 |
| MsG0080048698.01.T01 | AT5G08670 | 73.793 | 145 | 38 | 0 | 1 | 145 | 138 | 282 | 6.27e-66 | 210 |
| MsG0080048698.01.T01 | AT5G08680 | 73.793 | 145 | 38 | 0 | 1 | 145 | 141 | 285 | 6.66e-66 | 210 |
| MsG0080048698.01.T01 | AT2G07698 | 26.974 | 152 | 103 | 1 | 6 | 149 | 353 | 504 | 1.26e-11 | 62.0 |
| MsG0080048698.01.T01 | ATCG00120 | 27.211 | 147 | 104 | 2 | 5 | 149 | 79 | 224 | 7.22e-11 | 59.7 |
| MsG0080048698.01.T01 | ATMG01190 | 26.974 | 152 | 103 | 1 | 6 | 149 | 83 | 234 | 9.82e-11 | 59.3 |
Find 34 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAGCCTATTGATAATTT+AGG | 0.258224 | contig404end:+44934 | MsG0080048698.01.T01:CDS |
| CATGGAGGTGTATCCGTATT+TGG | 0.332634 | contig404end:+45168 | MsG0080048698.01.T01:CDS |
| AGGTAAAACAGTACTGATTA+TGG | 0.333322 | contig404end:+45119 | MsG0080048698.01.T01:CDS |
| TGAGGGAAATGATCTTTATA+TGG | 0.365509 | contig404end:+45212 | MsG0080048698.01.T01:CDS |
| CTCACCTACTCCGCCAAATA+CGG | 0.404574 | contig404end:-45181 | None:intergenic |
| CCTAGGGTTGCTCCGCCGAC+TGG | 0.429178 | contig404end:-44892 | None:intergenic |
| AATTTAGGTCCTGTAGATAC+TGG | 0.436084 | contig404end:+44949 | MsG0080048698.01.T01:CDS |
| ACAGGACCTAAATTATCAAT+AGG | 0.448331 | contig404end:-44940 | None:intergenic |
| TATATGGAAATGAAAGAATC+CGG | 0.476570 | contig404end:+45228 | MsG0080048698.01.T01:CDS |
| TCCGCCGACTGGAACACTTA+GGG | 0.488334 | contig404end:-44881 | None:intergenic |
| GGATACACCTCCATGAGCTT+TGG | 0.495355 | contig404end:-45160 | None:intergenic |
| GCAGGCGCGGATCTATGAAT+AGG | 0.503709 | contig404end:-44982 | None:intergenic |
| AATAACATTGCCAAAGCTCA+TGG | 0.503738 | contig404end:+45150 | MsG0080048698.01.T01:CDS |
| CCAGTCGGCGGAGCAACCCT+AGG | 0.517552 | contig404end:+44892 | MsG0080048698.01.T01:CDS |
| GTATCTAACTGTATAAAGGC+AGG | 0.519520 | contig404end:-45000 | None:intergenic |
| CTCCGCCGACTGGAACACTT+AGG | 0.525766 | contig404end:-44882 | None:intergenic |
| CCGCCGACTGGAACACTTAG+GGG | 0.531894 | contig404end:-44880 | None:intergenic |
| CACGTTGAAAATTCGACCTA+GGG | 0.533153 | contig404end:-44908 | None:intergenic |
| GATGTTGTGCCAGTATCTAC+AGG | 0.533199 | contig404end:-44958 | None:intergenic |
| CCCCTAAGTGTTCCAGTCGG+CGG | 0.555808 | contig404end:+44880 | MsG0080048698.01.T01:CDS |
| GCACGTTGAAAATTCGACCT+AGG | 0.562793 | contig404end:-44909 | None:intergenic |
| AGATGGTCTAAAGAGAGGAA+TGG | 0.562943 | contig404end:+44837 | MsG0080048698.01.T01:CDS |
| GTAGGTGAGCGTACTCGTGA+GGG | 0.590163 | contig404end:+45195 | MsG0080048698.01.T01:CDS |
| GTATCCGTATTTGGCGGAGT+AGG | 0.595672 | contig404end:+45177 | MsG0080048698.01.T01:CDS |
| AGTAGGTGAGCGTACTCGTG+AGG | 0.604267 | contig404end:+45194 | MsG0080048698.01.T01:CDS |
| GGAATGGATGTGATTGACAC+GGG | 0.632746 | contig404end:+44853 | MsG0080048698.01.T01:CDS |
| GGAGGTGTATCCGTATTTGG+CGG | 0.636053 | contig404end:+45171 | MsG0080048698.01.T01:CDS |
| AGGAATGGATGTGATTGACA+CGG | 0.636823 | contig404end:+44852 | MsG0080048698.01.T01:CDS |
| GCTACAGATGGTCTAAAGAG+AGG | 0.640370 | contig404end:+44832 | MsG0080048698.01.T01:CDS |
| TTAGCTCCTTATCGCCGTGG+CGG | 0.641710 | contig404end:+45066 | MsG0080048698.01.T01:CDS |
| GCTCCCCTAAGTGTTCCAGT+CGG | 0.659074 | contig404end:+44877 | MsG0080048698.01.T01:CDS |
| GTAGCTATGAGTGCTACAGA+TGG | 0.664604 | contig404end:+44820 | None:intergenic |
| TAACTGTATAAAGGCAGGCG+CGG | 0.685033 | contig404end:-44995 | None:intergenic |
| AACATTGCCAAAGCTCATGG+AGG | 0.715418 | contig404end:+45153 | MsG0080048698.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTAATGAAAAAATATTG+CGG | + | contig404end:45253-45272 | MsG0080048698.01.T01:CDS | 15.0% |
| !! | TTTAATTCCTGTTTCAAAAA+TGG | - | contig404end:45034-45053 | None:intergenic | 20.0% |
| !!! | AAATTATCCATTTTTGAAAC+AGG | + | contig404end:45024-45043 | MsG0080048698.01.T01:CDS | 20.0% |
| !!! | TATTTTTTCATTAATGACTC+CGG | - | contig404end:45250-45269 | None:intergenic | 20.0% |
| !!! | TTTTGTATCTAACTGTATAA+AGG | - | contig404end:45007-45026 | None:intergenic | 20.0% |
| ! | TATATGGAAATGAAAGAATC+CGG | + | contig404end:45228-45247 | MsG0080048698.01.T01:CDS | 25.0% |
| ACAGGACCTAAATTATCAAT+AGG | - | contig404end:44943-44962 | None:intergenic | 30.0% | |
| TGAGGGAAATGATCTTTATA+TGG | + | contig404end:45212-45231 | MsG0080048698.01.T01:CDS | 30.0% | |
| !! | AGGTAAAACAGTACTGATTA+TGG | + | contig404end:45119-45138 | MsG0080048698.01.T01:CDS | 30.0% |
| AATAACATTGCCAAAGCTCA+TGG | + | contig404end:45150-45169 | MsG0080048698.01.T01:CDS | 35.0% | |
| AATTTAGGTCCTGTAGATAC+TGG | + | contig404end:44949-44968 | MsG0080048698.01.T01:CDS | 35.0% | |
| GTATCTAACTGTATAAAGGC+AGG | - | contig404end:45003-45022 | None:intergenic | 35.0% | |
| ! | GGAGAGCCTATTGATAATTT+AGG | + | contig404end:44934-44953 | MsG0080048698.01.T01:CDS | 35.0% |
| AGATGGTCTAAAGAGAGGAA+TGG | + | contig404end:44837-44856 | MsG0080048698.01.T01:CDS | 40.0% | |
| AGGAATGGATGTGATTGACA+CGG | + | contig404end:44852-44871 | MsG0080048698.01.T01:CDS | 40.0% | |
| CACGTTGAAAATTCGACCTA+GGG | - | contig404end:44911-44930 | None:intergenic | 40.0% | |
| ! | GGAAAAATAGGACTTTTCGG+TGG | + | contig404end:45087-45106 | MsG0080048698.01.T01:CDS | 40.0% |
| ! | GGCGGAAAAATAGGACTTTT+CGG | + | contig404end:45084-45103 | MsG0080048698.01.T01:CDS | 40.0% |
| !! | AAAGTCCTATTTTTCCGCCA+CGG | - | contig404end:45083-45102 | None:intergenic | 40.0% |
| AACATTGCCAAAGCTCATGG+AGG | + | contig404end:45153-45172 | MsG0080048698.01.T01:CDS | 45.0% | |
| GATGTTGTGCCAGTATCTAC+AGG | - | contig404end:44961-44980 | None:intergenic | 45.0% | |
| GCACGTTGAAAATTCGACCT+AGG | - | contig404end:44912-44931 | None:intergenic | 45.0% | |
| GCTACAGATGGTCTAAAGAG+AGG | + | contig404end:44832-44851 | MsG0080048698.01.T01:CDS | 45.0% | |
| GGAATGGATGTGATTGACAC+GGG | + | contig404end:44853-44872 | MsG0080048698.01.T01:CDS | 45.0% | |
| TAACTGTATAAAGGCAGGCG+CGG | - | contig404end:44998-45017 | None:intergenic | 45.0% | |
| ! | CATGGAGGTGTATCCGTATT+TGG | + | contig404end:45168-45187 | MsG0080048698.01.T01:CDS | 45.0% |
| ! | GGTCGAATTTTCAACGTGCT+TGG | + | contig404end:44913-44932 | MsG0080048698.01.T01:CDS | 45.0% |
| CTCACCTACTCCGCCAAATA+CGG | - | contig404end:45184-45203 | None:intergenic | 50.0% | |
| GGATACACCTCCATGAGCTT+TGG | - | contig404end:45163-45182 | None:intergenic | 50.0% | |
| GTATCCGTATTTGGCGGAGT+AGG | + | contig404end:45177-45196 | MsG0080048698.01.T01:CDS | 50.0% | |
| ! | ATAGGACTTTTCGGTGGAGC+TGG | + | contig404end:45093-45112 | MsG0080048698.01.T01:CDS | 50.0% |
| ! | ATTTTTCCGCCACGGCGATA+AGG | - | contig404end:45075-45094 | None:intergenic | 50.0% |
| ! | GGAGGTGTATCCGTATTTGG+CGG | + | contig404end:45171-45190 | MsG0080048698.01.T01:CDS | 50.0% |
| ! | TAGGACTTTTCGGTGGAGCT+GGG | + | contig404end:45094-45113 | MsG0080048698.01.T01:CDS | 50.0% |
| ! | TATCGCCGTGGCGGAAAAAT+AGG | + | contig404end:45075-45094 | MsG0080048698.01.T01:CDS | 50.0% |
| !!! | CTTTTAGCTCCTTATCGCCG+TGG | + | contig404end:45063-45082 | MsG0080048698.01.T01:CDS | 50.0% |
| AGTAGGTGAGCGTACTCGTG+AGG | + | contig404end:45194-45213 | MsG0080048698.01.T01:CDS | 55.0% | |
| GCAGGCGCGGATCTATGAAT+AGG | - | contig404end:44985-45004 | None:intergenic | 55.0% | |
| GCTCCCCTAAGTGTTCCAGT+CGG | + | contig404end:44877-44896 | MsG0080048698.01.T01:CDS | 55.0% | |
| GTAGGTGAGCGTACTCGTGA+GGG | + | contig404end:45195-45214 | MsG0080048698.01.T01:CDS | 55.0% | |
| TTAGCTCCTTATCGCCGTGG+CGG | + | contig404end:45066-45085 | MsG0080048698.01.T01:CDS | 55.0% | |
| ! | AGGACTTTTCGGTGGAGCTG+GGG | + | contig404end:45095-45114 | MsG0080048698.01.T01:CDS | 55.0% |
| ! | TCCGCCGACTGGAACACTTA+GGG | - | contig404end:44884-44903 | None:intergenic | 55.0% |
| CCCCTAAGTGTTCCAGTCGG+CGG | + | contig404end:44880-44899 | MsG0080048698.01.T01:CDS | 60.0% | |
| ! | CCGCCGACTGGAACACTTAG+GGG | - | contig404end:44883-44902 | None:intergenic | 60.0% |
| ! | CTCCGCCGACTGGAACACTT+AGG | - | contig404end:44885-44904 | None:intergenic | 60.0% |
| ! | CTTTTCGGTGGAGCTGGGGT+AGG | + | contig404end:45099-45118 | MsG0080048698.01.T01:CDS | 60.0% |
| CCAGTCGGCGGAGCAACCCT+AGG | + | contig404end:44892-44911 | MsG0080048698.01.T01:CDS | 70.0% | |
| CCTAGGGTTGCTCCGCCGAC+TGG | - | contig404end:44895-44914 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig404end | gene | 44826 | 45287 | 44826 | ID=MsG0080048698.01;Name=MsG0080048698.01 |
| contig404end | mRNA | 44826 | 45287 | 44826 | ID=MsG0080048698.01.T01;Parent=MsG0080048698.01;Name=MsG0080048698.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|153 |
| contig404end | exon | 44826 | 45287 | 44826 | ID=MsG0080048698.01.T01:exon:5315;Parent=MsG0080048698.01.T01 |
| contig404end | CDS | 44826 | 45287 | 44826 | ID=MsG0080048698.01.T01:cds;Parent=MsG0080048698.01.T01 |
| Gene Sequence |
| Protein sequence |
