AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016366.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016366.01.T01 MTR_3g088630 95.714 210 5 1 32 241 1 206 1.28e-141 397
MsG0380016366.01.T01 MTR_8g038620 54.494 178 66 2 50 226 6 169 1.21e-58 184
MsG0380016366.01.T01 MTR_7g490310 54.706 170 58 5 53 217 9 164 1.29e-53 174
MsG0380016366.01.T01 MTR_3g015490 54.375 160 56 3 53 211 4 147 2.01e-50 163
MsG0380016366.01.T01 MTR_3g093860 53.472 144 48 2 54 197 19 143 7.22e-48 156
MsG0380016366.01.T01 MTR_5g036480 44.920 187 83 4 51 235 14 182 1.63e-47 158
MsG0380016366.01.T01 MTR_3g078613 50.649 154 53 3 52 204 22 153 5.79e-47 155
MsG0380016366.01.T01 MTR_3g078613 49.677 155 54 3 52 204 22 154 2.85e-46 154
MsG0380016366.01.T01 MTR_1g049100 53.289 152 50 4 51 201 6 137 7.71e-46 152
MsG0380016366.01.T01 MTR_4g106590 48.387 155 56 3 52 204 25 157 2.15e-43 147
MsG0380016366.01.T01 MTR_6g007460 39.269 219 57 4 50 214 8 204 3.92e-43 145
MsG0380016366.01.T01 MTR_4g051330 60.000 60 24 0 152 211 77 136 9.93e-19 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016366.01.T01 AT2G41310 58.170 153 49 3 53 204 9 147 3.41e-58 185
MsG0380016366.01.T01 AT3G57040 57.051 156 54 3 50 204 6 149 1.25e-55 179
MsG0380016366.01.T01 AT3G57040 57.051 156 54 3 50 204 6 149 1.25e-55 179
MsG0380016366.01.T01 AT1G59940 47.647 170 66 3 42 210 22 169 1.90e-48 160
MsG0380016366.01.T01 AT3G48100 51.592 157 54 3 53 208 25 160 3.76e-47 155
MsG0380016366.01.T01 AT1G59940 44.388 196 74 4 42 224 114 287 4.21e-47 159
MsG0380016366.01.T01 AT5G62920 53.947 152 47 3 53 203 25 154 1.87e-46 154
MsG0380016366.01.T01 AT1G10470 50.000 160 57 3 48 206 15 152 2.21e-46 155
MsG0380016366.01.T01 AT1G10470 50.318 157 55 3 51 206 32 166 4.85e-46 155
MsG0380016366.01.T01 AT1G19050 50.327 153 53 3 52 203 23 153 7.25e-45 150
MsG0380016366.01.T01 AT3G56380 51.299 154 53 3 50 202 17 149 8.54e-45 148
MsG0380016366.01.T01 AT3G56380 50.323 155 54 3 50 202 17 150 2.09e-44 147
MsG0380016366.01.T01 AT1G74890 48.718 156 57 3 52 206 17 150 6.26e-44 148
MsG0380016366.01.T01 AT2G40670 46.835 158 54 3 51 202 27 160 5.66e-41 139
MsG0380016366.01.T01 AT2G40670 45.912 159 55 3 51 202 27 161 1.27e-40 138
MsG0380016366.01.T01 AT2G07440 53.846 52 24 0 153 204 10 61 2.13e-14 68.9
MsG0380016366.01.T01 AT1G10470 36.471 85 53 1 123 206 6 90 3.99e-13 66.6

Find 54 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCGCCAACCCTTCATTT+TGG 0.107374 3:+82526190 None:intergenic
GTGGCTATGATTTACTTAAA+AGG 0.260284 3:-82528025 MsG0380016366.01.T01:CDS
CTGCACTGCAGGGATCTTCT+TGG 0.261594 3:-82526736 MsG0380016366.01.T01:intron
GATAAGGCTTTGAAATATCT+TGG 0.316965 3:-82529320 MsG0380016366.01.T01:CDS
TCTGATGACATAACCACAAC+TGG 0.369928 3:+82526704 None:intergenic
AATTGATATGGAGCTTGCTT+TGG 0.375819 3:-82529641 MsG0380016366.01.T01:CDS
AAGCAAGCTCCATATCAATT+TGG 0.381935 3:+82529644 None:intergenic
TATTCATCACCAAATTGATA+TGG 0.391096 3:-82529653 MsG0380016366.01.T01:CDS
TGGCTATGATTTACTTAAAA+GGG 0.422097 3:-82528024 MsG0380016366.01.T01:CDS
ATTGATCTCTCTGGAGGCTC+AGG 0.433469 3:+82526215 None:intergenic
GTCCGAGTCTGTGGTGGTAG+TGG 0.436880 3:+82526318 None:intergenic
AAATGAAGGGTTGGCGGTGG+TGG 0.439710 3:-82526187 MsG0380016366.01.T01:exon
ATGACAGATTATTGCATGCC+TGG 0.445954 3:-82528053 MsG0380016366.01.T01:CDS
GCTAATAGGTGCTTGGAAGA+AGG 0.458769 3:-82526454 MsG0380016366.01.T01:intron
GGGAAGATGATGAATGAGAG+TGG 0.471730 3:+82529757 None:intergenic
GAGATCAATGCCCAAAATGA+AGG 0.474067 3:-82526201 MsG0380016366.01.T01:exon
CTGTGTGGACTCTGGAGATA+AGG 0.474705 3:-82529336 MsG0380016366.01.T01:CDS
ACTTACATGCTAATTCTAGA+AGG 0.476558 3:+82526674 None:intergenic
ATTACCTCTTGTAGCTGCAA+TGG 0.489838 3:+82529215 None:intergenic
CTAATAGGTGCTTGGAAGAA+GGG 0.490036 3:-82526453 MsG0380016366.01.T01:intron
TAATTTGGCTAATAGGTGCT+TGG 0.497490 3:-82526461 MsG0380016366.01.T01:intron
ACAGTTACCTGTGTGGACTC+TGG 0.503672 3:-82529344 MsG0380016366.01.T01:intron
CTCTGGAGGCTCAGGAGACA+TGG 0.506463 3:+82526223 None:intergenic
TTGGAAAGATGTTCCAGTTG+TGG 0.523397 3:-82526717 MsG0380016366.01.T01:CDS
AACATAATAGTATCAGCAAA+CGG 0.524061 3:-82526250 MsG0380016366.01.T01:CDS
CTTAGAGATTCTTCATGCAA+AGG 0.532173 3:-82529514 MsG0380016366.01.T01:intron
TAGATGATAGTGTCATTGAT+AGG 0.538094 3:-82529555 MsG0380016366.01.T01:CDS
TTGGGCATTGATCTCTCTGG+AGG 0.540639 3:+82526209 None:intergenic
AAATCATAGCCACTCATCCC+AGG 0.545060 3:+82528035 None:intergenic
TGCCCAAAATGAAGGGTTGG+CGG 0.551731 3:-82526193 MsG0380016366.01.T01:exon
CAATGCCCAAAATGAAGGGT+TGG 0.553802 3:-82526196 MsG0380016366.01.T01:exon
TGCAAATCTGATAACTGAAG+AGG 0.563149 3:+82526409 None:intergenic
GCAAGAACACTTTCATGTGT+TGG 0.563382 3:-82529581 MsG0380016366.01.T01:CDS
TTCCACTACCACCACAGACT+CGG 0.564431 3:-82526320 MsG0380016366.01.T01:CDS
TGACAGATTATTGCATGCCT+GGG 0.579945 3:-82528052 MsG0380016366.01.T01:CDS
TGCAATGGTTGTTGAAGAGG+AGG 0.579983 3:+82529230 None:intergenic
CCAAAATGAAGGGTTGGCGG+TGG 0.583922 3:-82526190 MsG0380016366.01.T01:exon
TGAGAGTGGGAAAAGAGAGG+TGG 0.584714 3:+82529771 None:intergenic
AGCTGCAATGGTTGTTGAAG+AGG 0.586818 3:+82529227 None:intergenic
TAATAGGTGCTTGGAAGAAG+GGG 0.593866 3:-82526452 MsG0380016366.01.T01:intron
AGATCAATGCCCAAAATGAA+GGG 0.595865 3:-82526200 MsG0380016366.01.T01:exon
GTTGTCGTCGTCCGAGTCTG+TGG 0.598775 3:+82526309 None:intergenic
TGATTTACTTAAAAGGGTCA+AGG 0.599092 3:-82528018 MsG0380016366.01.T01:intron
TAATAGTATCAGCAAACGGA+AGG 0.602867 3:-82526246 MsG0380016366.01.T01:CDS
GGAAGATGATGAATGAGAGT+GGG 0.604844 3:+82529758 None:intergenic
TTGATAGGATGCTTCTAGAG+AGG 0.609363 3:-82529540 MsG0380016366.01.T01:CDS
ACAACCATTGCAGCTACAAG+AGG 0.610346 3:-82529219 MsG0380016366.01.T01:intron
TATTGCATGCCTGGGATGAG+TGG 0.615464 3:-82528044 MsG0380016366.01.T01:CDS
GAAAATCGTACAAATAAGAG+TGG 0.626970 3:-82526156 MsG0380016366.01.T01:three_prime_UTR
GAATGAGAGTGGGAAAAGAG+AGG 0.639186 3:+82529768 None:intergenic
GTCGTCGTCCGAGTCTGTGG+TGG 0.650795 3:+82526312 None:intergenic
TAATATAGAAGACTTTGTTG+AGG 0.651761 3:+82529265 None:intergenic
TGTTAAAACAGTTACCTGTG+TGG 0.666037 3:-82529351 MsG0380016366.01.T01:intron
CTTATCTCCAGAGTCCACAC+AGG 0.676893 3:+82529337 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATTAACAACTTAATT+TGG - Chr3:82529343-82529362 MsG0380016366.01.T01:CDS 10.0%
!! ATTTCATTAAATCTTATATA+TGG + Chr3:82528820-82528839 None:intergenic 10.0%
!! TAATATATACATGTTATATA+TGG - Chr3:82527071-82527090 MsG0380016366.01.T01:intron 10.0%
!! TTTCATTAAATCTTATATAT+GGG + Chr3:82528819-82528838 None:intergenic 10.0%
!!! AACATTAAATTTTTATGTTT+GGG - Chr3:82527691-82527710 MsG0380016366.01.T01:intron 10.0%
!!! ATATACATTTTTTTTTTTGA+AGG - Chr3:82527310-82527329 MsG0380016366.01.T01:intron 10.0%
!! TCAAAAGAAGAAAAAATTAA+TGG + Chr3:82529054-82529073 None:intergenic 15.0%
!! TTCATTAAATCTTATATATG+GGG + Chr3:82528818-82528837 None:intergenic 15.0%
!!! AAATTAAATCCTAACATTTT+GGG - Chr3:82528924-82528943 MsG0380016366.01.T01:intron 15.0%
!!! AGAAAATTAATTTTACTTCA+AGG - Chr3:82527995-82528014 MsG0380016366.01.T01:intron 15.0%
!!! CTTAGCTTTATTAATTTTAT+GGG + Chr3:82526828-82526847 None:intergenic 15.0%
!!! GAACATTAAATTTTTATGTT+TGG - Chr3:82527690-82527709 MsG0380016366.01.T01:intron 15.0%
!!! GAAGTTTTAAGATATAATAA+AGG + Chr3:82529227-82529246 None:intergenic 15.0%
!!! TAAATTAAATCCTAACATTT+TGG - Chr3:82528923-82528942 MsG0380016366.01.T01:intron 15.0%
!!! TTAGCTTTATTAATTTTATG+GGG + Chr3:82526827-82526846 None:intergenic 15.0%
!!! TTATATATTCTCTTGTTTAT+AGG - Chr3:82527427-82527446 MsG0380016366.01.T01:intron 15.0%
!!! TTTGATATTTGATTTTTAAG+TGG + Chr3:82528615-82528634 None:intergenic 15.0%
!! AAATATCTACTAAACTAGAT+AGG - Chr3:82528723-82528742 MsG0380016366.01.T01:intron 20.0%
!! AACTATTCAAAATACATACA+AGG - Chr3:82528353-82528372 MsG0380016366.01.T01:intron 20.0%
!! ACAAAAAAAGAATAGATACA+TGG + Chr3:82529027-82529046 None:intergenic 20.0%
!! ATACATGTTATATATGGATA+TGG - Chr3:82527077-82527096 MsG0380016366.01.T01:intron 20.0%
!! ATGCAACAATTTAAAGATTT+GGG + Chr3:82528488-82528507 None:intergenic 20.0%
!! GAAAAAAGAATACAATTCAA+TGG - Chr3:82527479-82527498 MsG0380016366.01.T01:intron 20.0%
!! GTACTACATATATATGATAA+TGG - Chr3:82527283-82527302 MsG0380016366.01.T01:intron 20.0%
!! TAAAACTTCTTCAAAGAAAA+AGG - Chr3:82529238-82529257 MsG0380016366.01.T01:CDS 20.0%
!! TCATTAAATCTTATATATGG+GGG + Chr3:82528817-82528836 None:intergenic 20.0%
!! TGAATGAAAGTAATTTGATA+AGG + Chr3:82527031-82527050 None:intergenic 20.0%
!!! ACAATTCAAAAAGAAGTATA+AGG - Chr3:82528273-82528292 MsG0380016366.01.T01:intron 20.0%
!!! AGATAGATTTAGTTCATATA+TGG + Chr3:82528888-82528907 None:intergenic 20.0%
!!! CAATTCAAAAAGAAGTATAA+GGG - Chr3:82528274-82528293 MsG0380016366.01.T01:intron 20.0%
!!! GCTTAGCTTTATTAATTTTA+TGG + Chr3:82526829-82526848 None:intergenic 20.0%
!!! TATACTTCTTTTTGAATTGT+TGG + Chr3:82528273-82528292 None:intergenic 20.0%
!!! TCTCTTTTTTAAACTTGAAT+AGG - Chr3:82527867-82527886 MsG0380016366.01.T01:intron 20.0%
! AAATCAAGAATTGAGAAAGA+GGG - Chr3:82528324-82528343 MsG0380016366.01.T01:intron 25.0%
! AACAATTTAAAGATTTGGGA+GGG + Chr3:82528484-82528503 None:intergenic 25.0%
! AACATAATAGTATCAGCAAA+CGG - Chr3:82529569-82529588 MsG0380016366.01.T01:CDS 25.0%
! AAGAATTTGTGTACTGAATT+TGG - Chr3:82526414-82526433 MsG0380016366.01.T01:CDS 25.0%
! AGAAAGAGTAAGAAAGAAAA+AGG - Chr3:82528948-82528967 MsG0380016366.01.T01:intron 25.0%
! AGCATACATTAAATCAGATT+AGG - Chr3:82527457-82527476 MsG0380016366.01.T01:intron 25.0%
! ATGAAAGTAATTTGATAAGG+AGG + Chr3:82527028-82527047 None:intergenic 25.0%
! CATATATGACTTATGATACA+TGG - Chr3:82527369-82527388 MsG0380016366.01.T01:intron 25.0%
! CATGCAACAATTTAAAGATT+TGG + Chr3:82528489-82528508 None:intergenic 25.0%
! CATGGATCAAAACAATAATT+AGG + Chr3:82527561-82527580 None:intergenic 25.0%
! CATTAAATCTTATATATGGG+GGG + Chr3:82528816-82528835 None:intergenic 25.0%
! TAAATCAAGAATTGAGAAAG+AGG - Chr3:82528323-82528342 MsG0380016366.01.T01:intron 25.0%
! TAACAATTTCAACAGTCTAA+AGG + Chr3:82526969-82526988 None:intergenic 25.0%
! TAATATAGAAGACTTTGTTG+AGG + Chr3:82526557-82526576 None:intergenic 25.0%
! TAATTAATTGTAACTACCCA+AGG + Chr3:82528698-82528717 None:intergenic 25.0%
! TATTCATCACCAAATTGATA+TGG - Chr3:82526166-82526185 MsG0380016366.01.T01:three_prime_UTR 25.0%
! TCAAGTTTAAAAAAGAGAGA+GGG + Chr3:82527865-82527884 None:intergenic 25.0%
! TCCTAATAATTGAGATTGTA+CGG + Chr3:82526354-82526373 None:intergenic 25.0%
! TCTCCTATGTCTAATAAAAT+TGG + Chr3:82528231-82528250 None:intergenic 25.0%
! TGGAATAAAAATCACTGAAA+TGG + Chr3:82528528-82528547 None:intergenic 25.0%
! TGGCTATGATTTACTTAAAA+GGG - Chr3:82527795-82527814 MsG0380016366.01.T01:intron 25.0%
! TTCAACTATCTTGAAAACTT+TGG + Chr3:82526657-82526676 None:intergenic 25.0%
! TTTGGTTAAGTAATTGTTTG+TGG - Chr3:82526432-82526451 MsG0380016366.01.T01:CDS 25.0%
!! AAATCTCTCTTTTGTGAAAA+AGG - Chr3:82527636-82527655 MsG0380016366.01.T01:intron 25.0%
!! AACAACTTAATTTGGCTAAT+AGG - Chr3:82529351-82529370 MsG0380016366.01.T01:intron 25.0%
!! AATTAATTTTACTTCAAGGC+TGG - Chr3:82527999-82528018 MsG0380016366.01.T01:intron 25.0%
!! CATCCAATTTTATTAGACAT+AGG - Chr3:82528225-82528244 MsG0380016366.01.T01:intron 25.0%
!! CCTCTAAAAAAAATACAGTT+AGG - Chr3:82527143-82527162 MsG0380016366.01.T01:intron 25.0%
!! GGAATTATATATGTTGATGA+AGG + Chr3:82527125-82527144 None:intergenic 25.0%
!! TGTGACTTTAAAGATAGTTA+CGG - Chr3:82528118-82528137 MsG0380016366.01.T01:intron 25.0%
!! TTCAAGTTTAAAAAAGAGAG+AGG + Chr3:82527866-82527885 None:intergenic 25.0%
!!! AAGAATTTTCAAGGGATTTT+AGG + Chr3:82529454-82529473 None:intergenic 25.0%
!!! AGCAAAATATACCTTTTTTC+TGG + Chr3:82526717-82526736 None:intergenic 25.0%
!!! ATGTTGATGAAGGTAATTTT+TGG + Chr3:82527115-82527134 None:intergenic 25.0%
!!! ATTAGTTTTGTCCAGAAAAA+AGG - Chr3:82526703-82526722 MsG0380016366.01.T01:CDS 25.0%
!!! ATTTTTAAGTGGATCATAGT+TGG + Chr3:82528604-82528623 None:intergenic 25.0%
!!! CCTAACTGTATTTTTTTTAG+AGG + Chr3:82527146-82527165 None:intergenic 25.0%
!!! TTGATTTAGAGTCTTTGTTT+TGG + Chr3:82528311-82528330 None:intergenic 25.0%
AAAAAAGAGAGAGGGAATTT+AGG + Chr3:82527857-82527876 None:intergenic 30.0%
AAAAAGAGAGAGGGAATTTA+GGG + Chr3:82527856-82527875 None:intergenic 30.0%
AACTATCTTGAAAACTTTGG+AGG + Chr3:82526654-82526673 None:intergenic 30.0%
ACTTACATGCTAATTCTAGA+AGG + Chr3:82529148-82529167 None:intergenic 30.0%
AGATTGTACGGAAAAAATGT+TGG + Chr3:82526342-82526361 None:intergenic 30.0%
ATGATGAAACATGAGGTTAT+GGG + Chr3:82528672-82528691 None:intergenic 30.0%
CAACAATTTAAAGATTTGGG+AGG + Chr3:82528485-82528504 None:intergenic 30.0%
GAAAATCGTACAAATAAGAG+TGG - Chr3:82529663-82529682 MsG0380016366.01.T01:CDS 30.0%
GGCAAAATAGTAAAACGTAA+CGG + Chr3:82528758-82528777 None:intergenic 30.0%
GTGGCTATGATTTACTTAAA+AGG - Chr3:82527794-82527813 MsG0380016366.01.T01:intron 30.0%
TAAACCAAAGCGACTTTATA+TGG - Chr3:82527191-82527210 MsG0380016366.01.T01:intron 30.0%
TATGATGAAACATGAGGTTA+TGG + Chr3:82528673-82528692 None:intergenic 30.0%
TCCGTACAATCTCAATTATT+AGG - Chr3:82526350-82526369 MsG0380016366.01.T01:CDS 30.0%
TCCTAACTAAGAAAGGAAAA+AGG + Chr3:82526905-82526924 None:intergenic 30.0%
TCTTAAGTCCTAACTAAGAA+AGG + Chr3:82526912-82526931 None:intergenic 30.0%
TGATTTACTTAAAAGGGTCA+AGG - Chr3:82527801-82527820 MsG0380016366.01.T01:intron 30.0%
TTAGAAGAAAAAAACGCAGA+AGG + Chr3:82526941-82526960 None:intergenic 30.0%
TTAGTAGTATTATGCTGAGT+GGG - Chr3:82526986-82527005 MsG0380016366.01.T01:intron 30.0%
TTTGTGAAAAAGGATACGTA+CGG - Chr3:82527646-82527665 MsG0380016366.01.T01:intron 30.0%
! ATTGATGCAGCATTAGATTT+TGG + Chr3:82529292-82529311 None:intergenic 30.0%
! CTCATCAGAAGAATTTTCAA+GGG + Chr3:82529462-82529481 None:intergenic 30.0%
! TAGATGATAGTGTCATTGAT+AGG - Chr3:82526264-82526283 MsG0380016366.01.T01:CDS 30.0%
! TCCTTTTTCCTTTCTTAGTT+AGG - Chr3:82526901-82526920 MsG0380016366.01.T01:intron 30.0%
! TGATTTTTATTCCACGACAA+AGG - Chr3:82528534-82528553 MsG0380016366.01.T01:intron 30.0%
! TTTTTCCTCAAAGAACTTGA+AGG + Chr3:82528446-82528465 None:intergenic 30.0%
!! AGTTTAATTTTCGCATCTTG+TGG - Chr3:82528058-82528077 MsG0380016366.01.T01:CDS 30.0%
!! GATAAGGCTTTGAAATATCT+TGG - Chr3:82526499-82526518 MsG0380016366.01.T01:intron 30.0%
!! TTATTTTTCATCCTTTGTCG+TGG + Chr3:82528548-82528567 None:intergenic 30.0%
!!! ATTTAGAGTCTTTGTTTTGG+TGG + Chr3:82528308-82528327 None:intergenic 30.0%
!!! TTTAGAGTCTTTGTTTTGGT+GGG + Chr3:82528307-82528326 None:intergenic 30.0%
AAAGAAAATTGCTTACGAGC+AGG - Chr3:82528186-82528205 MsG0380016366.01.T01:intron 35.0%
AACTCCATATAAAGTCGCTT+TGG + Chr3:82527198-82527217 None:intergenic 35.0%
AAGCAAGCTCCATATCAATT+TGG + Chr3:82526178-82526197 None:intergenic 35.0%
AAGGTGTATGATGAAACATG+AGG + Chr3:82528679-82528698 None:intergenic 35.0%
AGATCAATGCCCAAAATGAA+GGG - Chr3:82529619-82529638 MsG0380016366.01.T01:CDS 35.0%
AGTCAACACGATAAAATGGA+TGG + Chr3:82526877-82526896 None:intergenic 35.0%
CAAGAATATAGTGTCTGCTA+TGG - Chr3:82527590-82527609 MsG0380016366.01.T01:intron 35.0%
CATGTTTCATCATACACCTT+GGG - Chr3:82528679-82528698 MsG0380016366.01.T01:intron 35.0%
CTCTTTCTACCCAAAATGTT+AGG + Chr3:82528936-82528955 None:intergenic 35.0%
CTTAGAGATTCTTCATGCAA+AGG - Chr3:82526305-82526324 MsG0380016366.01.T01:CDS 35.0%
GCTTAGTCAACACGATAAAA+TGG + Chr3:82526881-82526900 None:intergenic 35.0%
GTTAGTAGTATTATGCTGAG+TGG - Chr3:82526985-82527004 MsG0380016366.01.T01:intron 35.0%
TAATAGTATCAGCAAACGGA+AGG - Chr3:82529573-82529592 MsG0380016366.01.T01:CDS 35.0%
TAATTTGGCTAATAGGTGCT+TGG - Chr3:82529358-82529377 MsG0380016366.01.T01:intron 35.0%
TAGTAGTATTATGCTGAGTG+GGG - Chr3:82526987-82527006 MsG0380016366.01.T01:intron 35.0%
TCATCAAAGTAACCTCTTAG+AGG + Chr3:82528405-82528424 None:intergenic 35.0%
TCATGTTTCATCATACACCT+TGG - Chr3:82528678-82528697 MsG0380016366.01.T01:intron 35.0%
TGCAAATCTGATAACTGAAG+AGG + Chr3:82529413-82529432 None:intergenic 35.0%
TGTTAAAACAGTTACCTGTG+TGG - Chr3:82526468-82526487 MsG0380016366.01.T01:intron 35.0%
TTCTTCATGCAAAGGTAGTT+AGG - Chr3:82526313-82526332 MsG0380016366.01.T01:CDS 35.0%
! AATTGATATGGAGCTTGCTT+TGG - Chr3:82526178-82526197 MsG0380016366.01.T01:three_prime_UTR 35.0%
! ATCATGTGCACTATTTTGCA+GGG - Chr3:82527724-82527743 MsG0380016366.01.T01:intron 35.0%
! GCTCATCAGAAGAATTTTCA+AGG + Chr3:82529463-82529482 None:intergenic 35.0%
! GTAGATGTATTTTGTCGACA+AGG + Chr3:82528638-82528657 None:intergenic 35.0%
! GTTTTACTATTTTGCCCTCT+GGG - Chr3:82528762-82528781 MsG0380016366.01.T01:intron 35.0%
! TATCTTGAAAACTTTGGAGG+AGG + Chr3:82526651-82526670 None:intergenic 35.0%
! TTTTACTATTTTGCCCTCTG+GGG - Chr3:82528763-82528782 MsG0380016366.01.T01:intron 35.0%
!! TCAAGGGATTTTAGGAAGTA+TGG + Chr3:82529446-82529465 None:intergenic 35.0%
!! TGTTCTTGCTTCAAGTTTTG+TGG + Chr3:82526227-82526246 None:intergenic 35.0%
AGGGAATTTAGGGAAGATGT+CGG + Chr3:82527846-82527865 None:intergenic 40.0%
AGTTCACTAGCACTTTGCAA+AGG - Chr3:82527968-82527987 MsG0380016366.01.T01:intron 40.0%
ATATTCTTGCGAGGAGATCA+TGG + Chr3:82527579-82527598 None:intergenic 40.0%
ATCTTATATATGGGGGGAGA+TGG + Chr3:82528810-82528829 None:intergenic 40.0%
ATGACAGATTATTGCATGCC+TGG - Chr3:82527766-82527785 MsG0380016366.01.T01:intron 40.0%
ATTACCTCTTGTAGCTGCAA+TGG + Chr3:82526607-82526626 None:intergenic 40.0%
ATTTACGAAAATACCCCCAG+AGG + Chr3:82528780-82528799 None:intergenic 40.0%
CTAATAGGTGCTTGGAAGAA+GGG - Chr3:82529366-82529385 MsG0380016366.01.T01:intron 40.0%
GAGATCAATGCCCAAAATGA+AGG - Chr3:82529618-82529637 MsG0380016366.01.T01:CDS 40.0%
GCAAGAACACTTTCATGTGT+TGG - Chr3:82526238-82526257 MsG0380016366.01.T01:CDS 40.0%
GGAAGATGATGAATGAGAGT+GGG + Chr3:82526064-82526083 None:intergenic 40.0%
GGAGGATCTGAAAGAGAAAT+TGG + Chr3:82527222-82527241 None:intergenic 40.0%
TAATAGGTGCTTGGAAGAAG+GGG - Chr3:82529367-82529386 MsG0380016366.01.T01:intron 40.0%
TCAAAGTAACCTCTTAGAGG+TGG + Chr3:82528402-82528421 None:intergenic 40.0%
TCTGATGACATAACCACAAC+TGG + Chr3:82529118-82529137 None:intergenic 40.0%
TGACAGATTATTGCATGCCT+GGG - Chr3:82527767-82527786 MsG0380016366.01.T01:intron 40.0%
TGAGTGGGGATATTGAACTT+TGG - Chr3:82527001-82527020 MsG0380016366.01.T01:intron 40.0%
TTCAGATCCTCCATTCATCT+AGG - Chr3:82527230-82527249 MsG0380016366.01.T01:intron 40.0%
TTCCTCAAAGAACTTGAAGG+TGG + Chr3:82528443-82528462 None:intergenic 40.0%
TTGGAAAGATGTTCCAGTTG+TGG - Chr3:82529102-82529121 MsG0380016366.01.T01:intron 40.0%
TTTACGAAAATACCCCCAGA+GGG + Chr3:82528779-82528798 None:intergenic 40.0%
! CATCATGTGCACTATTTTGC+AGG - Chr3:82527723-82527742 MsG0380016366.01.T01:intron 40.0%
! CGTTTTACTATTTTGCCCTC+TGG - Chr3:82528761-82528780 MsG0380016366.01.T01:intron 40.0%
! TTCCACCTTCAAGTTCTTTG+AGG - Chr3:82528438-82528457 MsG0380016366.01.T01:intron 40.0%
! TTGATAGGATGCTTCTAGAG+AGG - Chr3:82526279-82526298 MsG0380016366.01.T01:CDS 40.0%
! TTTACTATTTTGCCCTCTGG+GGG - Chr3:82528764-82528783 MsG0380016366.01.T01:intron 40.0%
!!! ATTTTGGGCATTGATCTCTC+TGG + Chr3:82529616-82529635 None:intergenic 40.0%
AAATCATAGCCACTCATCCC+AGG + Chr3:82527787-82527806 None:intergenic 45.0%
ACAACCATTGCAGCTACAAG+AGG - Chr3:82526600-82526619 MsG0380016366.01.T01:intron 45.0%
AGCTAGAAACCACCTCTAAG+AGG - Chr3:82528390-82528409 MsG0380016366.01.T01:intron 45.0%
AGCTGCAATGGTTGTTGAAG+AGG + Chr3:82526595-82526614 None:intergenic 45.0%
CAATGCCCAAAATGAAGGGT+TGG - Chr3:82529623-82529642 MsG0380016366.01.T01:CDS 45.0%
GAAGGTGGAAGAGATTGTAG+AGG + Chr3:82528428-82528447 None:intergenic 45.0%
GAATGAGAGTGGGAAAAGAG+AGG + Chr3:82526054-82526073 None:intergenic 45.0%
GCAGACACTATATTCTTGCG+AGG + Chr3:82527588-82527607 None:intergenic 45.0%
GCTAATAGGTGCTTGGAAGA+AGG - Chr3:82529365-82529384 MsG0380016366.01.T01:intron 45.0%
GGAATTTAGGGAAGATGTCG+GGG + Chr3:82527844-82527863 None:intergenic 45.0%
GGGAAGATGATGAATGAGAG+TGG + Chr3:82526065-82526084 None:intergenic 45.0%
GGGAATTTAGGGAAGATGTC+GGG + Chr3:82527845-82527864 None:intergenic 45.0%
GTACGTACAGTGCAGTGAAA+AGG + Chr3:82527537-82527556 None:intergenic 45.0%
TGCAATGGTTGTTGAAGAGG+AGG + Chr3:82526592-82526611 None:intergenic 45.0%
! CTTGAAAACTTTGGAGGAGG+AGG + Chr3:82526648-82526667 None:intergenic 45.0%
!!! TTTATTTTATATATTTTGAA+TGG - Chr3:82528142-82528161 MsG0380016366.01.T01:intron 5.0%
ACACTGCTTACTGCACTGCA+GGG - Chr3:82529073-82529092 MsG0380016366.01.T01:intron 50.0%
ACAGTTACCTGTGTGGACTC+TGG - Chr3:82526475-82526494 MsG0380016366.01.T01:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr3:82526086-82526105 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + Chr3:82526086-82526105 None:intergenic 50.0%
CTTATCTCCAGAGTCCACAC+AGG + Chr3:82526485-82526504 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + Chr3:82526087-82526106 None:intergenic 50.0%
TATTGCATGCCTGGGATGAG+TGG - Chr3:82527775-82527794 MsG0380016366.01.T01:intron 50.0%
TCCTCCATTCATCTAGGTCG+CGG - Chr3:82527236-82527255 MsG0380016366.01.T01:intron 50.0%
TGCCCAAAATGAAGGGTTGG+CGG - Chr3:82529626-82529645 MsG0380016366.01.T01:CDS 50.0%
TTCCACTACCACCACAGACT+CGG - Chr3:82529499-82529518 MsG0380016366.01.T01:intron 50.0%
! ATTGATCTCTCTGGAGGCTC+AGG + Chr3:82529607-82529626 None:intergenic 50.0%
! CACCGCCAACCCTTCATTTT+GGG + Chr3:82529631-82529650 None:intergenic 50.0%
! CTGTGTGGACTCTGGAGATA+AGG - Chr3:82526483-82526502 MsG0380016366.01.T01:intron 50.0%
!! TTGGGCATTGATCTCTCTGG+AGG + Chr3:82529613-82529632 None:intergenic 50.0%
CTGCACTGCAGGGATCTTCT+TGG - Chr3:82529083-82529102 MsG0380016366.01.T01:intron 55.0%
GACACTGCTTACTGCACTGC+AGG - Chr3:82529072-82529091 MsG0380016366.01.T01:intron 55.0%
GAGAGAGAGAGAGAGAGAGG+GGG + Chr3:82526085-82526104 None:intergenic 55.0%
GCATCCGCGACCTAGATGAA+TGG + Chr3:82527243-82527262 None:intergenic 55.0%
TCCGCGACCTAGATGAATGG+AGG + Chr3:82527240-82527259 None:intergenic 55.0%
! AAATGAAGGGTTGGCGGTGG+TGG - Chr3:82529632-82529651 MsG0380016366.01.T01:CDS 55.0%
! CCAAAATGAAGGGTTGGCGG+TGG - Chr3:82529629-82529648 MsG0380016366.01.T01:CDS 55.0%
! CCACCGCCAACCCTTCATTT+TGG + Chr3:82529632-82529651 None:intergenic 55.0%
GTCCGAGTCTGTGGTGGTAG+TGG + Chr3:82529504-82529523 None:intergenic 60.0%
GTTGTCGTCGTCCGAGTCTG+TGG + Chr3:82529513-82529532 None:intergenic 60.0%
! CTCTGGAGGCTCAGGAGACA+TGG + Chr3:82529599-82529618 None:intergenic 60.0%
GTCGTCGTCCGAGTCTGTGG+TGG + Chr3:82529510-82529529 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82526050 82529791 82526050 ID=MsG0380016366.01;Name=MsG0380016366.01
Chr3 mRNA 82526050 82529791 82526050 ID=MsG0380016366.01.T01;Parent=MsG0380016366.01;Name=MsG0380016366.01.T01;_AED=0.38;_eAED=0.38;_QI=0|1|1|1|0.8|0.66|6|154|262
Chr3 exon 82526050 82526468 82526050 ID=MsG0380016366.01.T01:exon:10906;Parent=MsG0380016366.01.T01
Chr3 exon 82526680 82526747 82526680 ID=MsG0380016366.01.T01:exon:10905;Parent=MsG0380016366.01.T01
Chr3 exon 82528019 82528096 82528019 ID=MsG0380016366.01.T01:exon:10904;Parent=MsG0380016366.01.T01
Chr3 exon 82529220 82529362 82529220 ID=MsG0380016366.01.T01:exon:10903;Parent=MsG0380016366.01.T01
Chr3 exon 82529515 82529699 82529515 ID=MsG0380016366.01.T01:exon:10902;Parent=MsG0380016366.01.T01
Chr3 exon 82529742 82529791 82529742 ID=MsG0380016366.01.T01:exon:10901;Parent=MsG0380016366.01.T01
Chr3 CDS 82529742 82529791 82529742 ID=MsG0380016366.01.T01:cds;Parent=MsG0380016366.01.T01
Chr3 CDS 82529515 82529699 82529515 ID=MsG0380016366.01.T01:cds;Parent=MsG0380016366.01.T01
Chr3 CDS 82529220 82529362 82529220 ID=MsG0380016366.01.T01:cds;Parent=MsG0380016366.01.T01
Chr3 CDS 82528019 82528096 82528019 ID=MsG0380016366.01.T01:cds;Parent=MsG0380016366.01.T01
Chr3 CDS 82526680 82526747 82526680 ID=MsG0380016366.01.T01:cds;Parent=MsG0380016366.01.T01
Chr3 CDS 82526204 82526468 82526204 ID=MsG0380016366.01.T01:cds;Parent=MsG0380016366.01.T01
Chr3 three_prime_UTR 82526050 82526203 82526050 ID=MsG0380016366.01.T01:three_prime_utr;Parent=MsG0380016366.01.T01
Gene Sequence

>MsG0380016366.01.T01

ACCTCTCTTTTCCCACTCTCATTCATCATCTTCCCCCTCTCTCTCTCTCTATACTATATACTTCAATTAACAAGTATTCATCACCAAATTGATATGGAGCTTGCTTTGGATAGTAGAAAATTACAATTACAACCACAAAACTTGAAGCAAGAACACTTTCATGTGTTGGCTGTAGATGATAGTGTCATTGATAGGATGCTTCTAGAGAGGCTTCTTAGAGATTCTTCATGCAAAGTTACCTGTGTGGACTCTGGAGATAAGGCTTTGAAATATCTTGGATTGAATATTGATGAAATTGATAATAATTCTTCCTCAACAAAGTCTTCTATATTAGAATCATCATCTCCTCCTCTTCAACAACCATTGCAGCTACAAGAGGGAAGCAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTTAAAAGGGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGGTTATGTCATCAGAAAATGTACCTTCTAGAATTAGCATGTGCTTGGAAGAAGGGGCAGAAGAGTTTCTAATGAAGCCTCTTCAGTTATCAGATTTGCAGAAGCTTCAACCATACTTCCTAAAATCCCTTGAAAATTCTTCTGATGAGCAAGAATCTGCTAACAGTTCCACTACCACCACAGACTCGGACGACGACAACGATCTCATCGACAGCAACAATAACAATAATGATGATAACATAATAGTATCAGCAAACGGAAGGCCATGTCTCCTGAGCCTCCAGAGAGATCAATGCCCAAAATGA
Protein sequence

>MsG0380016366.01.T01

TSLFPLSFIIFPLSLSLYYILQLTSIHHQIDMELALDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEIDNNSSSTKSSILESSSPPLQQPLQLQEGSKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRISMCLEEGAEEFLMKPLQLSDLQKLQPYFLKSLENSSDEQESANSSTTTTDSDDDNDLIDSNNNNNDDNIIVSANGRPCLLSLQRDQCPK*