AlfalfaGEDB | MsG0780041468.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041468.01

KEGG: -
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041468.01.T01	PWZ19369.1	55.172	174	25	2	54	183	224	388	5.93E-47	171

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041468.01.T01	Q9SJG2	64.22	109	26	1	75	183	325	420	4.11E-36	136

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041468.01.T01	A0A3L6EE88	55.172	174	25	2	54	183	224	388	2.83e-47	171

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048065.01	MsG0780041468.01	0.801371	9.291323e-49	4.429816e-46
MsG0080048307.01	MsG0780041468.01	0.818572	1.827922e-52	1.373282e-49
MsG0080048400.01	MsG0780041468.01	0.811367	7.255103e-51	4.482384e-48
MsG0080048463.01	MsG0780041468.01	0.803881	2.820790e-49	1.433805e-46
MsG0080048464.01	MsG0780041468.01	0.822391	2.428607e-53	2.030173e-50
MsG0080048660.01	MsG0780041468.01	0.851239	1.010391e-60	2.031978e-57
MsG0080048826.01	MsG0780041468.01	0.824167	9.345627e-54	8.214351e-51
MsG0080049002.01	MsG0780041468.01	0.858603	7.354023e-63	1.887289e-59
MsG0180000184.01	MsG0780041468.01	0.814298	1.654310e-51	1.105865e-48
MsG0180000218.01	MsG0780041468.01	-0.825544	4.424667e-54	4.045036e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041468.01.T01	MTR_7g111690	72.566	113	18	1	75	187	337	436	1.42e-43	154
MsG0780041468.01.T01	MTR_4g123880	70.642	109	19	1	75	183	321	416	6.11e-43	151
MsG0780041468.01.T01	MTR_4g123880	70.642	109	19	1	75	183	321	416	8.69e-43	151
MsG0780041468.01.T01	MTR_2g046130	69.725	109	20	1	75	183	326	421	1.21e-40	145
MsG0780041468.01.T01	MTR_7g111690	73.333	105	9	2	75	160	337	441	1.74e-40	145
MsG0780041468.01.T01	MTR_3g047890	64.486	107	25	1	75	181	323	416	4.00e-36	134
MsG0780041468.01.T01	MTR_5g091380	60.177	113	32	2	75	187	325	424	7.01e-34	127
MsG0780041468.01.T01	MTR_3g116590	58.407	113	34	2	75	187	276	375	1.49e-32	123
MsG0780041468.01.T01	MTR_4g069970	60.748	107	29	2	75	181	282	375	1.58e-32	123
MsG0780041468.01.T01	MTR_4g069970	60.748	107	29	2	75	181	282	375	1.60e-32	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041468.01.T01	AT1G56720	69.027	113	22	1	75	187	321	420	5.07e-41	147
MsG0780041468.01.T01	AT1G56720	69.027	113	22	1	75	187	321	420	5.07e-41	147
MsG0780041468.01.T01	AT1G56720	69.027	113	22	1	75	187	321	420	5.07e-41	147
MsG0780041468.01.T01	AT1G56720	69.027	113	22	1	75	187	321	420	5.07e-41	147
MsG0780041468.01.T01	AT1G09440	65.487	113	26	2	75	187	299	398	5.49e-38	138
MsG0780041468.01.T01	AT1G09440	65.487	113	26	2	75	187	299	398	5.49e-38	138
MsG0780041468.01.T01	AT2G42960	64.220	109	26	1	75	183	325	420	4.19e-37	136
MsG0780041468.01.T01	AT2G42960	64.220	109	26	1	75	183	325	420	4.19e-37	136
MsG0780041468.01.T01	AT2G42960	64.220	109	26	1	75	183	325	420	4.19e-37	136
MsG0780041468.01.T01	AT2G42960	64.220	109	26	1	75	183	325	420	4.19e-37	136

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Find 83 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGGAGATCAGAAGAAG+TGG	0.574807	7:+91295899	MsG0780041468.01.T01:CDS
AAGAGTGATGTTTATAGCTT+TGG	0.352691	7:+91294719	MsG0780041468.01.T01:CDS
AAGATAAGAACCCAATACAC+TGG	0.567536	7:+91297113	MsG0780041468.01.T01:three_prime_UTR
AAGCTTACATCTAACACTTC+AGG	0.386329	7:-91294886	None:intergenic
AATCTCACTCCTGTCTGTGT+CGG	0.584928	7:-91296870	None:intergenic
AATGCTAAGGTTTCTGATTT+TGG	0.140909	7:+91294474	MsG0780041468.01.T01:intron
AATTGCCACTGCAGAAAGTT+GGG	0.459536	7:+91297202	MsG0780041468.01.T01:three_prime_UTR
ACACTGGGTGTGTACATAAT+CGG	0.413833	7:+91297129	MsG0780041468.01.T01:three_prime_UTR
ACTCGAGTTATGGGAACCTT+TGG	0.379653	7:+91294537	MsG0780041468.01.T01:CDS
AGAGCAGAGGGTAACGGTAA+CGG	0.594646	7:+91296909	MsG0780041468.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTGATGTTTATAGCTT+TGG	+	Chr7:91294719-91294738	MsG0780041468.01.T01:CDS	30.0%
ACTGTTTGATTAAGATTGGA+CGG	+	Chr7:91296380-91296399	MsG0780041468.01.T01:intron	30.0%
AGAGTGATGTTTATAGCTTT+GGG	+	Chr7:91294720-91294739	MsG0780041468.01.T01:CDS	30.0%
ATATTGTAATACTAGACGGT+TGG	-	Chr7:91296231-91296250	None:intergenic	30.0%
ATCAGAGATAGTTTATACAG+AGG	+	Chr7:91295718-91295737	MsG0780041468.01.T01:intron	30.0%
ATCCAAATCCATCATGATAA+TGG	-	Chr7:91296322-91296341	None:intergenic	30.0%
ATGATTTAATGATGAAGTGG+GGG	-	Chr7:91296089-91296108	None:intergenic	30.0%
CAGATTCATTTCATCATACA+TGG	+	Chr7:91293281-91293300	MsG0780041468.01.T01:CDS	30.0%
CATACAGTCATACTTTGTAA+TGG	-	Chr7:91294041-91294060	None:intergenic	30.0%
CCAGACAATCGAAAAAATAA+TGG	-	Chr7:91295060-91295079	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	91293193	91297334	91293193	ID=MsG0780041468.01;Name=MsG0780041468.01
Chr7	mRNA	91293193	91297334	91293193	ID=MsG0780041468.01.T01;Parent=MsG0780041468.01;Name=MsG0780041468.01.T01;_AED=0.36;_eAED=0.38;_QI=0\|0.16\|0.14\|1\|1\|1\|7\|345\|241
Chr7	exon	91293193	91293348	91293193	ID=MsG0780041468.01.T01:exon:18518;Parent=MsG0780041468.01.T01
Chr7	exon	91293921	91293986	91293921	ID=MsG0780041468.01.T01:exon:18519;Parent=MsG0780041468.01.T01
Chr7	exon	91294483	91294559	91294483	ID=MsG0780041468.01.T01:exon:18520;Parent=MsG0780041468.01.T01
Chr7	exon	91294676	91294787	91294676	ID=MsG0780041468.01.T01:exon:18521;Parent=MsG0780041468.01.T01
Chr7	exon	91294844	91294900	91294844	ID=MsG0780041468.01.T01:exon:18522;Parent=MsG0780041468.01.T01
Chr7	exon	91295864	91295938	91295864	ID=MsG0780041468.01.T01:exon:18523;Parent=MsG0780041468.01.T01
Chr7	exon	91296807	91297334	91296807	ID=MsG0780041468.01.T01:exon:18524;Parent=MsG0780041468.01.T01
Chr7	CDS	91293193	91293348	91293193	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	CDS	91293921	91293986	91293921	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	CDS	91294483	91294559	91294483	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	CDS	91294676	91294787	91294676	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	CDS	91294844	91294900	91294844	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	CDS	91295864	91295938	91295864	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	CDS	91296807	91296989	91296807	ID=MsG0780041468.01.T01:cds;Parent=MsG0780041468.01.T01
Chr7	three_prime_UTR	91296990	91297334	91296990	ID=MsG0780041468.01.T01:three_prime_utr;Parent=MsG0780041468.01.T01

Gene Sequence

>MsG0780041468.01.T01

ATGAAATCTAGTGACAAGGAATCAGACAAAGTTATGGTTCATTTAGGTTTAGGGAAGAAGGTGAAGAATGGTGATAGTAGTAGTCATTCAGATTCATTTCATCATACATGGAGAGAGATGGGGGTGGAGGGTCACATTCGCAATCAGGTGAAGAAGTGTCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGTCATGTCAGACACAAAAACTTGGTTTCTGATTTTGGTCTGGCCAAATTACTGGGTGCTGGGAAGAGTCATGTCACAACTCGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAACACTGGCCTTCTAAATGAGAAGAGTGATGTTTATAGCTTTGGGTGTTTGCTATTGGAAGGAATCACTGAAGAGATCCAGTTGATTATGCTTGAAGTATGTGCGTTTGATTGCGATGATTTACTTAATAATCCTGAAGTGTTAGATGTGAATCTAGTTGATTGGCTGAAAATGATGGTTGGAAATAGGAGATCAGAAGAAGTGGTTGACCCAAACATTGAGGATCGAAGGCACAGGAGAAGAAATCAAGGGGGTAGTGCAGAATCGACTCCCAGAGGGAATTTTCCGACACAGACAGGAGTGAGATTCAGAGTTCTAGAGAAGAGAGCAGAGGGTAACGGTAACGGCACACATGACTCAAAGGCGGATTCTTTTTTAGAATCAATGGTTTACTGGGATGTATAA

Protein sequence

>MsG0780041468.01.T01

MKSSDKESDKVMVHLGLGKKVKNGDSSSHSDSFHHTWREMGVEGHIRNQVKKCQAEKEFRVEVEAIGHVRHKNLVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGCLLLEGITEEIQLIMLEVCAFDCDDLLNNPEVLDVNLVDWLKMMVGNRRSEEVVDPNIEDRRHRRRNQGGSAESTPRGNFPTQTGVRFRVLEKRAEGNGNGTHDSKADSFLESMVYWDV*