AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012567.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012567.01.T01 MTR_3g025870 87.734 481 49 4 1 478 1 474 0.0 824
MsG0380012567.01.T01 MTR_3g025870 93.534 232 15 0 531 762 434 665 1.97e-149 452
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012567.01.T01 AT5G61040 36.466 266 120 7 533 759 332 587 6.19e-33 135
MsG0380012567.01.T01 AT5G61040 28.228 457 192 15 1 443 1 335 1.29e-27 119
MsG0380012567.01.T01 AT5G08010 31.852 270 152 4 520 757 292 561 3.59e-26 114
MsG0380012567.01.T01 AT5G08010 28.080 349 157 13 1 347 1 257 7.46e-19 91.3

Find 163 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTAAAGATCCAATTT+TGG 0.143154 3:+19897027 None:intergenic
TGCATCAAGTTTCATCTTCT+TGG 0.170236 3:+19897003 None:intergenic
TTGAAGGGGTTTGATTTAAT+TGG 0.179347 3:-19898200 MsG0380012567.01.T01:five_prime_UTR
GTTCCTTCCTTGCCCAAAAT+TGG 0.190143 3:-19897040 MsG0380012567.01.T01:CDS
ACCTGATAGATTGAGAATTA+AGG 0.192741 3:+19894121 None:intergenic
AAAGACATATTCTTCCATTT+TGG 0.197205 3:+19897225 None:intergenic
CAACTTTCTAAGGAATTTAA+TGG 0.229860 3:+19897277 None:intergenic
CTGTTATATAGCGGCTTTAT+AGG 0.253100 3:-19898024 MsG0380012567.01.T01:five_prime_UTR
TTCAGTCTTGGGATTTCTCT+TGG 0.270448 3:-19895717 MsG0380012567.01.T01:CDS
CAAAGAATCATATGATAAAA+AGG 0.284476 3:-19895451 MsG0380012567.01.T01:CDS
CACCATATGATGATAACTTT+AGG 0.286181 3:-19897453 MsG0380012567.01.T01:CDS
TTCCTTAGAAAGTTGTTTCA+TGG 0.286371 3:-19897269 MsG0380012567.01.T01:CDS
GAGCAAAATACGAGTAGTTT+TGG 0.297577 3:-19897412 MsG0380012567.01.T01:CDS
CGGCGTTTCTCTTCAGTCTT+GGG 0.311500 3:-19895728 MsG0380012567.01.T01:CDS
GTAACTTGTAGTGTAGAGTT+TGG 0.311786 3:-19898058 MsG0380012567.01.T01:five_prime_UTR
CCTGATAGATTGAGAATTAA+GGG 0.314416 3:+19894122 None:intergenic
ACCATATGATGATAACTTTA+GGG 0.323166 3:-19897452 MsG0380012567.01.T01:CDS
AAGTTCTTCTCTTGGTTGTT+TGG 0.328480 3:-19898104 MsG0380012567.01.T01:five_prime_UTR
GAGTTACAAAATGAAAATTA+TGG 0.330169 3:-19895567 MsG0380012567.01.T01:CDS
CTGGTTATTTAGCTAAATAT+TGG 0.333394 3:-19897783 MsG0380012567.01.T01:CDS
TTATCATCATATGGTGATAA+TGG 0.336970 3:+19897460 None:intergenic
CCGGCGTTTCTCTTCAGTCT+TGG 0.340040 3:-19895729 MsG0380012567.01.T01:CDS
AGCCATGAAACAACTTTCTA+AGG 0.343642 3:+19897267 None:intergenic
AAGAAGAGGAGAACCTTTCT+TGG 0.349044 3:+19893830 None:intergenic
TTGTGGGAGAAGATTCCTTT+TGG 0.352372 3:+19894192 None:intergenic
CGAAATAACCTTGTTGTAGA+TGG 0.359330 3:+19897187 None:intergenic
TACAAAGTGTTGTCAATTAC+CGG 0.361425 3:-19897946 MsG0380012567.01.T01:five_prime_UTR
CCAAAGACCTTACTTTCATC+TGG 0.367245 3:+19894237 None:intergenic
ATTCCTATCCACAACTCTTT+CGG 0.369194 3:-19897349 MsG0380012567.01.T01:CDS
CCAGATGAAAGTAAGGTCTT+TGG 0.369710 3:-19894237 MsG0380012567.01.T01:CDS
CCCTTAATTCTCAATCTATC+AGG 0.371613 3:-19894122 MsG0380012567.01.T01:CDS
TAGAACTTGAAAGCAAAATA+AGG 0.371971 3:+19894613 None:intergenic
AAGGTCCGCTTTCGCATGAT+TGG 0.372235 3:-19893995 MsG0380012567.01.T01:CDS
AAAACGTTTCGTTGAGAGAA+AGG 0.374754 3:+19897318 None:intergenic
TCCTTGGATGGTCCTTCAAC+AGG 0.378617 3:-19897580 MsG0380012567.01.T01:CDS
ATGTAGCTCCTTACCATTGA+AGG 0.383984 3:+19895521 None:intergenic
ATATAAAGAGCATGCCAAAA+TGG 0.389469 3:-19897239 MsG0380012567.01.T01:CDS
GAAGCTGAACTTGAGAGGTT+AGG 0.389764 3:-19895384 MsG0380012567.01.T01:CDS
AGTGGAAAACTCACTCAATA+TGG 0.390330 3:-19896935 MsG0380012567.01.T01:intron
TTCATGGAAAGTTCTTCTCT+TGG 0.392527 3:-19898112 MsG0380012567.01.T01:five_prime_UTR
ATCAATAAGTTTCCTCTTGT+GGG 0.394744 3:+19894176 None:intergenic
TCAGTCTTGGGATTTCTCTT+GGG 0.395373 3:-19895716 MsG0380012567.01.T01:CDS
TGATTCTTTGCATTCTACTC+TGG 0.395507 3:+19895464 None:intergenic
GGGTTGTTTGAGGGAGGTTA+AGG 0.397445 3:+19897675 None:intergenic
TAATTGGCAAAATATATGTT+TGG 0.399450 3:-19898184 MsG0380012567.01.T01:five_prime_UTR
AAGCTGAACTTGAGAGGTTA+GGG 0.400444 3:-19895383 MsG0380012567.01.T01:CDS
GGTGAAACTGCATAGTTTGC+AGG 0.405373 3:+19894347 None:intergenic
ACGTCTCCGGGGTTGTTTGA+GGG 0.414797 3:+19897666 None:intergenic
GTTGTGGATAGGAATCAATT+TGG 0.417343 3:+19897357 None:intergenic
CACGTCTCCGGGGTTGTTTG+AGG 0.424022 3:+19897665 None:intergenic
ATTTCGTTTCACGGATACTA+AGG 0.428464 3:-19898836 MsG0380012567.01.T01:five_prime_UTR
CTTGTAGTGTAGAGTTTGGT+TGG 0.434627 3:-19898054 MsG0380012567.01.T01:five_prime_UTR
TTCCTCGTAGGTTTCATTGT+AGG 0.440539 3:+19894085 None:intergenic
ATCAATTTGGCAGGAAACTC+AGG 0.441226 3:+19897370 None:intergenic
CCACCATTGACAACAGTTAG+TGG 0.442259 3:-19897860 MsG0380012567.01.T01:five_prime_UTR
AGTGTGACAATGGGTGTTAA+TGG 0.442264 3:-19894476 MsG0380012567.01.T01:CDS
CAGTGCATTGACTGGAAGTA+AGG 0.443744 3:-19897116 MsG0380012567.01.T01:CDS
TCCCTAAAGTTATCATCATA+TGG 0.445438 3:+19897451 None:intergenic
TCTAGTGAATTGAATGTTAG+TGG 0.446663 3:-19893921 MsG0380012567.01.T01:CDS
ATGAAACTTGATGCAGTTGA+TGG 0.447217 3:-19896995 MsG0380012567.01.T01:CDS
CTCTGAAGACAAATGATAAG+AGG 0.447999 3:+19897735 None:intergenic
GGAGACGTGGCTTCTTATAG+AGG 0.450752 3:-19897559 MsG0380012567.01.T01:CDS
CTGTAACACTGTATTATTAG+TGG 0.452979 3:-19897912 MsG0380012567.01.T01:five_prime_UTR
GATTCTTTGCATTCTACTCT+GGG 0.455473 3:+19895465 None:intergenic
GTTCTCAGATGCGAATTCCT+TGG 0.456535 3:-19897596 MsG0380012567.01.T01:CDS
GTATCCGTGAAACGAAATCT+AGG 0.457226 3:+19898841 None:intergenic
CTTTCACTCGTGTTTCGAGT+TGG 0.461666 3:+19894285 None:intergenic
CAAAATAAGGCATGCAACAT+TGG 0.463401 3:+19894626 None:intergenic
GAAGCCACGTCTCCTGTTGA+AGG 0.464754 3:+19897568 None:intergenic
CAACCCCGGAGACGTGAAAA+GGG 0.464778 3:-19897658 MsG0380012567.01.T01:CDS
ATTGTTGAAAGAACCAAGAA+AGG 0.468316 3:-19893843 MsG0380012567.01.T01:CDS
AAAATAGCCAGATGAAAGTA+AGG 0.469262 3:-19894244 MsG0380012567.01.T01:CDS
GCTCGGATAATTTCCTATCC+AGG 0.472177 3:+19895340 None:intergenic
CATCAATAAGTTTCCTCTTG+TGG 0.473507 3:+19894175 None:intergenic
TGTTGATAATTGAAAGAAAG+AGG 0.484934 3:-19898081 MsG0380012567.01.T01:five_prime_UTR
TGGATAGGAATCAATTTGGC+AGG 0.489229 3:+19897361 None:intergenic
ACGTGTGATCATTCCTTCAA+TGG 0.489917 3:-19895534 MsG0380012567.01.T01:CDS
CTCTTATCATTTGTCTTCAG+AGG 0.490889 3:-19897734 MsG0380012567.01.T01:CDS
ACAACCCCGGAGACGTGAAA+AGG 0.492826 3:-19897659 MsG0380012567.01.T01:CDS
GTATCCTAGATTTCGTTTCA+CGG 0.493854 3:-19898845 MsG0380012567.01.T01:five_prime_UTR
AACTTTAGGGATGGTGCAGA+TGG 0.495448 3:-19897439 MsG0380012567.01.T01:CDS
TAATGGTCTACTAACATGCT+CGG 0.495493 3:+19897294 None:intergenic
ATATGAGATTTACTTTACAC+TGG 0.499670 3:+19894549 None:intergenic
GGACATGAATGCGTCAAGCC+TGG 0.500491 3:-19895358 MsG0380012567.01.T01:CDS
AAAATTCTTGCAGATTGATC+CGG 0.500918 3:-19894450 MsG0380012567.01.T01:CDS
GGCTGATGGTGAATTGTCTT+CGG 0.512782 3:+19894043 None:intergenic
TCTAGTAGATATTGGAATTG+TGG 0.514278 3:-19894699 MsG0380012567.01.T01:intron
GTTGAAGCAGAATGAGAACT+TGG 0.515778 3:-19895640 MsG0380012567.01.T01:CDS
AATGGTCTACTAACATGCTC+GGG 0.515836 3:+19897295 None:intergenic
AGGTGGAGAGGCTATTGATA+AGG 0.520272 3:-19893869 MsG0380012567.01.T01:CDS
ATAGATTGAGAATTAAGGGC+TGG 0.521418 3:+19894126 None:intergenic
ACTGCATAGTTTGCAGGAAG+AGG 0.525668 3:+19894353 None:intergenic
ATACGATTTCGCGACAATGT+TGG 0.527511 3:-19893955 MsG0380012567.01.T01:CDS
GATTATAAGCTGCATAAAGC+TGG 0.528729 3:-19897094 MsG0380012567.01.T01:CDS
TGGTTAGAGTGGTGAATTGA+AGG 0.530209 3:-19898216 MsG0380012567.01.T01:five_prime_UTR
GTGATAGTGAGGAGGTGGAG+AGG 0.532539 3:-19893881 MsG0380012567.01.T01:CDS
ACATGATGGTAGTTTCCAAA+AGG 0.535115 3:-19894207 MsG0380012567.01.T01:CDS
TCCTGTTGAAGGACCATCCA+AGG 0.538591 3:+19897579 None:intergenic
TTTCGAGCTGACACGGCTAG+TGG 0.539697 3:-19894398 MsG0380012567.01.T01:CDS
TGAATGTGATAGTGAGGAGG+TGG 0.540055 3:-19893886 MsG0380012567.01.T01:CDS
CACGAAGTATTGTCGAATCT+CGG 0.540599 3:+19898867 None:intergenic
GGCAAAATATATGTTTGGCA+TGG 0.544553 3:-19898179 MsG0380012567.01.T01:five_prime_UTR
TGATCATTCCTTCAATGGTA+AGG 0.545919 3:-19895529 MsG0380012567.01.T01:CDS
GGAGGTTAAGGAGCTGCTAA+AGG 0.548362 3:+19897687 None:intergenic
AGTTTGATCAGTGCATTGAC+TGG 0.553765 3:-19897124 MsG0380012567.01.T01:CDS
TAAGGAGCTGCTAAAGGACT+CGG 0.554501 3:+19897693 None:intergenic
TAGATTGAGAATTAAGGGCT+GGG 0.555194 3:+19894127 None:intergenic
CTTTGTACTAACACATATCA+CGG 0.555980 3:+19897962 None:intergenic
TGTTACAGCGCTGCTATAGC+CGG 0.556175 3:+19897927 None:intergenic
CAATATTGTTAGTGTGACAA+TGG 0.559359 3:-19894486 MsG0380012567.01.T01:CDS
CATATTTATTAATTCCTCGT+AGG 0.561440 3:+19894073 None:intergenic
TGTCCGAAAGAGTTGTGGAT+AGG 0.561918 3:+19897346 None:intergenic
ACTTGAACCAAACATAGCTA+TGG 0.562941 3:+19894520 None:intergenic
GTTGATAATTGAAAGAAAGA+GGG 0.564530 3:-19898080 MsG0380012567.01.T01:five_prime_UTR
GCAAAATCTGCTACAAACTC+CGG 0.565111 3:+19894431 None:intergenic
TCAGATGCGAATTCCTTGGA+TGG 0.569288 3:-19897592 MsG0380012567.01.T01:CDS
CAGACAAACATTGAAGATAA+CGG 0.571610 3:-19898905 MsG0380012567.01.T01:five_prime_UTR
GTCGTCACTATCATGAATGA+TGG 0.571660 3:+19894022 None:intergenic
TGAATGCGTCAAGCCTGGAT+AGG 0.575622 3:-19895353 MsG0380012567.01.T01:CDS
TGAACTTGAGAGGTTAGGGT+TGG 0.576928 3:-19895379 MsG0380012567.01.T01:CDS
CATCCACTAACTGTTGTCAA+TGG 0.577540 3:+19897857 None:intergenic
GTTAGAGTGGTGAATTGAAG+GGG 0.580565 3:-19898214 MsG0380012567.01.T01:five_prime_UTR
AGGTTATTTCGTGTTAGCAA+TGG 0.581371 3:-19897175 MsG0380012567.01.T01:CDS
CATGATAGTGACGACAAAGA+AGG 0.582628 3:-19894014 MsG0380012567.01.T01:CDS
CCACTAACTGTTGTCAATGG+TGG 0.585819 3:+19897860 None:intergenic
AGGTGAGTTTCGAGCTGACA+CGG 0.586885 3:-19894405 MsG0380012567.01.T01:CDS
TATGCTTACCTCAACAAGCT+CGG 0.589234 3:+19895323 None:intergenic
GAAATTATCCGAGCTTGTTG+AGG 0.590101 3:-19895331 MsG0380012567.01.T01:CDS
AATATTGTTAGTGTGACAAT+GGG 0.594251 3:-19894485 MsG0380012567.01.T01:CDS
AGCTTGAAGCTGAACTTGAG+AGG 0.594301 3:-19895389 MsG0380012567.01.T01:CDS
GCATTCCAATCATGCGAAAG+CGG 0.594884 3:+19893990 None:intergenic
TCTCCGGGGTTGTTTGAGGG+AGG 0.601668 3:+19897669 None:intergenic
TATGATGATAACTTTAGGGA+TGG 0.603242 3:-19897448 MsG0380012567.01.T01:CDS
GATTTCGCGACAATGTTGGA+AGG 0.608266 3:-19893951 MsG0380012567.01.T01:CDS
AAGGAATCTTCTCCCACAAG+AGG 0.611867 3:-19894188 MsG0380012567.01.T01:CDS
ATCAAAATCTACTCTTCCAG+TGG 0.616966 3:+19898238 None:intergenic
GTTGTAGATGGTGATGAAAG+AGG 0.619822 3:+19897199 None:intergenic
GGTTAGAGTGGTGAATTGAA+GGG 0.621908 3:-19898215 MsG0380012567.01.T01:five_prime_UTR
AGGAAGAGGTGTGGTGACAT+TGG 0.623249 3:+19894367 None:intergenic
TGGTCCTTCAACAGGAGACG+TGG 0.623404 3:-19897572 MsG0380012567.01.T01:CDS
GTTATTGTGAGAACGACTGA+AGG 0.623492 3:-19898147 MsG0380012567.01.T01:five_prime_UTR
ATTTCGCGACAATGTTGGAA+GGG 0.624496 3:-19893950 MsG0380012567.01.T01:CDS
GAAAGATTCGATGACAGTGA+AGG 0.627956 3:-19895589 MsG0380012567.01.T01:CDS
GAGACGTGGCTTCTTATAGA+GGG 0.628104 3:-19897558 MsG0380012567.01.T01:CDS
GCTATCAAAACAAACATACA+TGG 0.630266 3:+19894590 None:intergenic
CCAAGACTGAAGAGAAACGC+CGG 0.633812 3:+19895729 None:intergenic
TTATTGTGAGAACGACTGAA+GGG 0.634190 3:-19898146 MsG0380012567.01.T01:five_prime_UTR
TAACCTCCCTCAAACAACCC+CGG 0.642935 3:-19897672 MsG0380012567.01.T01:CDS
GGTGCAGTGCTGTTATATAG+CGG 0.643098 3:-19898033 MsG0380012567.01.T01:five_prime_UTR
AAGTTGTGAATGTGATAGTG+AGG 0.643341 3:-19893892 MsG0380012567.01.T01:CDS
CTATCATGAATGATGGCTGA+TGG 0.644869 3:+19894029 None:intergenic
CTGTTGTCAATGGTGGATCG+AGG 0.654501 3:+19897867 None:intergenic
GTTAGTGGATGTGAGAGTCA+CGG 0.667507 3:-19897845 MsG0380012567.01.T01:five_prime_UTR
TTTCATCACCATCTACAACA+AGG 0.679672 3:-19897195 MsG0380012567.01.T01:CDS
TGGGATAATAACTTCCAACA+TGG 0.689562 3:-19895697 MsG0380012567.01.T01:CDS
AAACGTAAACTCAGTTCATG+CGG 0.690091 3:+19894326 None:intergenic
CAGTTGATGGACGAAGTCGA+AGG 0.702830 3:-19896982 MsG0380012567.01.T01:CDS
TCTTTGGAAACTGAACATGA+TGG 0.702890 3:-19894221 MsG0380012567.01.T01:CDS
TTGTGAATGTGATAGTGAGG+AGG 0.723093 3:-19893889 MsG0380012567.01.T01:CDS
GAAGTATTGTCGAATCTCGG+AGG 0.730198 3:+19898870 None:intergenic
ATAGTTTGCAGGAAGAGGTG+TGG 0.753936 3:+19894358 None:intergenic
TTATAGGAGCAATAGCATAG+CGG 0.766088 3:-19898008 MsG0380012567.01.T01:five_prime_UTR
AGCCTACAATGAAACCTACG+AGG 0.771327 3:-19894087 MsG0380012567.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATCTTAAAAATATTGA+AGG + Chr3:19896570-19896589 None:intergenic 10.0%
!!! AGTTTTAATATATGAAAAAT+GGG - Chr3:19897634-19897653 MsG0380012567.01.T01:CDS 10.0%
!!! TAGTTTTAATATATGAAAAA+TGG - Chr3:19897633-19897652 MsG0380012567.01.T01:CDS 10.0%
!! AAAAAAGATATTGTATTCTA+TGG - Chr3:19898897-19898916 MsG0380012567.01.T01:five_prime_UTR 15.0%
!! TACAAAAATAAGTATATGTA+TGG + Chr3:19897975-19897994 None:intergenic 15.0%
!!! TTATAATTTTGATTAACTCA+AGG + Chr3:19896648-19896667 None:intergenic 15.0%
!! AAAAAACTAAAACTACTCAA+AGG + Chr3:19894123-19894142 None:intergenic 20.0%
!! CAAAGAATCATATGATAAAA+AGG - Chr3:19897245-19897264 MsG0380012567.01.T01:CDS 20.0%
!! GAAAAATTGTAATGAAATCT+TGG - Chr3:19896417-19896436 MsG0380012567.01.T01:intron 20.0%
!! GAATAACCTAACTATAAATA+AGG + Chr3:19894366-19894385 None:intergenic 20.0%
!! GAGTTACAAAATGAAAATTA+TGG - Chr3:19897129-19897148 MsG0380012567.01.T01:CDS 20.0%
!! TAAATATTGGAAAAAGAGTT+TGG - Chr3:19894926-19894945 MsG0380012567.01.T01:intron 20.0%
!! TAATTGGCAAAATATATGTT+TGG - Chr3:19894512-19894531 MsG0380012567.01.T01:CDS 20.0%
!! TATTGTAAGAAGAAAATGTT+GGG - Chr3:19894009-19894028 MsG0380012567.01.T01:CDS 20.0%
!! TTATTGTAAGAAGAAAATGT+TGG - Chr3:19894008-19894027 MsG0380012567.01.T01:CDS 20.0%
!! TTCAAAGAATGGAATTAAAA+TGG - Chr3:19897514-19897533 MsG0380012567.01.T01:CDS 20.0%
!!! AAAAGAAAGAGTTCTAAAAA+AGG + Chr3:19895967-19895986 None:intergenic 20.0%
!!! AAGATGTTTTTTTAGATAGA+AGG - Chr3:19895063-19895082 MsG0380012567.01.T01:intron 20.0%
!!! AATTTTCTCTATTCAGTATT+CGG + Chr3:19895550-19895569 None:intergenic 20.0%
!!! AGATGTTTTTTTAGATAGAA+GGG - Chr3:19895064-19895083 MsG0380012567.01.T01:intron 20.0%
!!! ATCATTTAAAGATCCAATTT+TGG + Chr3:19895672-19895691 None:intergenic 20.0%
!!! CATTAGTTTTGATTGTTTTT+GGG - Chr3:19894033-19894052 MsG0380012567.01.T01:CDS 20.0%
!!! TCATTAGTTTTGATTGTTTT+TGG - Chr3:19894032-19894051 MsG0380012567.01.T01:CDS 20.0%
!!! TCATTTAAAGATCCAATTTT+GGG + Chr3:19895671-19895690 None:intergenic 20.0%
!!! TTATTTTTTTCAGGTTTTGT+TGG - Chr3:19894423-19894442 MsG0380012567.01.T01:CDS 20.0%
!!! TTGAGTAGTTTTAGTTTTTT+GGG - Chr3:19894123-19894142 MsG0380012567.01.T01:CDS 20.0%
!!! TTTGAGTAGTTTTAGTTTTT+TGG - Chr3:19894122-19894141 MsG0380012567.01.T01:CDS 20.0%
! AAAACATAAATTCTTGCCAT+CGG + Chr3:19894331-19894350 None:intergenic 25.0%
! AAACATTTCAAACACAACAT+AGG + Chr3:19895819-19895838 None:intergenic 25.0%
! AATATTGTTAGTGTGACAAT+GGG - Chr3:19898211-19898230 MsG0380012567.01.T01:five_prime_UTR 25.0%
! ACCATATGATGATAACTTTA+GGG - Chr3:19895244-19895263 MsG0380012567.01.T01:intron 25.0%
! ATAATTTCCTCAAGAATAAC+AGG + Chr3:19896330-19896349 None:intergenic 25.0%
! ATAGAATGAAAAGAAGTCTA+TGG + Chr3:19896366-19896385 None:intergenic 25.0%
! ATATCATTCAATGCATGTTT+GGG - Chr3:19897698-19897717 MsG0380012567.01.T01:CDS 25.0%
! ATATGAGATTTACTTTACAC+TGG + Chr3:19898150-19898169 None:intergenic 25.0%
! CAATATGATCTCTATATACA+AGG + Chr3:19897558-19897577 None:intergenic 25.0%
! CATATTTATTAATTCCTCGT+AGG + Chr3:19898626-19898645 None:intergenic 25.0%
! CTAATGGAAATTTCAAAGAA+TGG - Chr3:19897503-19897522 MsG0380012567.01.T01:CDS 25.0%
! CTGGTTATTTAGCTAAATAT+TGG - Chr3:19894913-19894932 MsG0380012567.01.T01:intron 25.0%
! GAAAAACACAAAAATGTAGT+TGG - Chr3:19895629-19895648 MsG0380012567.01.T01:CDS 25.0%
! TAGAACTTGAAAGCAAAATA+AGG + Chr3:19898086-19898105 None:intergenic 25.0%
! TATTTAAGCTGTTTAGTTAC+TGG + Chr3:19896144-19896163 None:intergenic 25.0%
! TTATCATCATATGGTGATAA+TGG + Chr3:19895239-19895258 None:intergenic 25.0%
! TTCTGACATTGAAGAAAAAA+AGG + Chr3:19893955-19893974 None:intergenic 25.0%
! TTTGTACTTCTAGTAGATAT+TGG - Chr3:19897989-19898008 MsG0380012567.01.T01:five_prime_UTR 25.0%
!! AAAGACATATTCTTCCATTT+TGG + Chr3:19895474-19895493 None:intergenic 25.0%
!! CAACTTTCTAAGGAATTTAA+TGG + Chr3:19895422-19895441 None:intergenic 25.0%
!! CTTGTTCCTTATTTATAGTT+AGG - Chr3:19894357-19894376 MsG0380012567.01.T01:CDS 25.0%
!!! CTAAAAAAGGTTTTGAATTG+CGG + Chr3:19895954-19895973 None:intergenic 25.0%
!!! GATGTTTTTTTAGATAGAAG+GGG - Chr3:19895065-19895084 MsG0380012567.01.T01:intron 25.0%
!!! GTTGATAATTGAAAGAAAGA+GGG - Chr3:19894616-19894635 MsG0380012567.01.T01:CDS 25.0%
!!! TGAGTAGTTTTAGTTTTTTG+GGG - Chr3:19894124-19894143 MsG0380012567.01.T01:CDS 25.0%
!!! TGTTGATAATTGAAAGAAAG+AGG - Chr3:19894615-19894634 MsG0380012567.01.T01:CDS 25.0%
!!! TGTTTTTTCGTTAGTTAGTT+TGG - Chr3:19896713-19896732 MsG0380012567.01.T01:intron 25.0%
!!! TTGATTTCATCTTCTGAAAT+TGG - Chr3:19894219-19894238 MsG0380012567.01.T01:CDS 25.0%
!!! TTGCAATATAACGGATTTTT+AGG + Chr3:19895912-19895931 None:intergenic 25.0%
!!! TTTGATTGTTTTTGGGAAAT+GGG - Chr3:19894040-19894059 MsG0380012567.01.T01:CDS 25.0%
!!! TTTTGATTGTTTTTGGGAAA+TGG - Chr3:19894039-19894058 MsG0380012567.01.T01:CDS 25.0%
!!! TTTTTTGCATTTTGAAGAAG+AGG + Chr3:19898883-19898902 None:intergenic 25.0%
AAAATAGCCAGATGAAAGTA+AGG - Chr3:19898452-19898471 MsG0380012567.01.T01:intron 30.0%
AAAATTCTTGCAGATTGATC+CGG - Chr3:19898246-19898265 MsG0380012567.01.T01:five_prime_UTR 30.0%
AAACACAAAAATGTAGTTGG+AGG - Chr3:19895632-19895651 MsG0380012567.01.T01:CDS 30.0%
AACACAAAAATGTAGTTGGA+GGG - Chr3:19895633-19895652 MsG0380012567.01.T01:CDS 30.0%
ACCTGATAGATTGAGAATTA+AGG + Chr3:19898578-19898597 None:intergenic 30.0%
ATCAATAAGTTTCCTCTTGT+GGG + Chr3:19898523-19898542 None:intergenic 30.0%
ATTGTTGAAAGAACCAAGAA+AGG - Chr3:19898853-19898872 MsG0380012567.01.T01:five_prime_UTR 30.0%
CAATATTGTTAGTGTGACAA+TGG - Chr3:19898210-19898229 MsG0380012567.01.T01:five_prime_UTR 30.0%
CACCATATGATGATAACTTT+AGG - Chr3:19895243-19895262 MsG0380012567.01.T01:intron 30.0%
CAGACAAACATTGAAGATAA+CGG - Chr3:19893791-19893810 MsG0380012567.01.T01:CDS 30.0%
CATTGAGTAAATAGTCACTT+TGG + Chr3:19896859-19896878 None:intergenic 30.0%
CCTGATAGATTGAGAATTAA+GGG + Chr3:19898577-19898596 None:intergenic 30.0%
CTAAACAGCTTAAATATAGC+TGG - Chr3:19896148-19896167 MsG0380012567.01.T01:intron 30.0%
CTGGAAAAAGAAACTTTGTA+TGG + Chr3:19898131-19898150 None:intergenic 30.0%
CTGTAACACTGTATTATTAG+TGG - Chr3:19894784-19894803 MsG0380012567.01.T01:intron 30.0%
CTTTATATTGCTGGAAAATG+AGG - Chr3:19895857-19895876 MsG0380012567.01.T01:intron 30.0%
CTTTGTACTAACACATATCA+CGG + Chr3:19894737-19894756 None:intergenic 30.0%
GATATCATTCAATGCATGTT+TGG - Chr3:19897697-19897716 MsG0380012567.01.T01:CDS 30.0%
GCTATCAAAACAAACATACA+TGG + Chr3:19898109-19898128 None:intergenic 30.0%
TACTAACGAAAGATACATTC+AGG - Chr3:19896778-19896797 MsG0380012567.01.T01:intron 30.0%
TCCCTAAAGTTATCATCATA+TGG + Chr3:19895248-19895267 None:intergenic 30.0%
TCTAGTAGATATTGGAATTG+TGG - Chr3:19897997-19898016 MsG0380012567.01.T01:five_prime_UTR 30.0%
TCTAGTGAATTGAATGTTAG+TGG - Chr3:19898775-19898794 MsG0380012567.01.T01:intron 30.0%
TGGAAAAAGAGTTTGGAAAA+TGG - Chr3:19894933-19894952 MsG0380012567.01.T01:intron 30.0%
TTGTTTAGTACCAATGTGTT+TGG + Chr3:19897860-19897879 None:intergenic 30.0%
TTTAGACAAAAGCTACACTT+TGG + Chr3:19897782-19897801 None:intergenic 30.0%
! AGCTATCAATATGCTTTTCA+GGG + Chr3:19897209-19897228 None:intergenic 30.0%
! ATATAAAGAGCATGCCAAAA+TGG - Chr3:19895457-19895476 MsG0380012567.01.T01:CDS 30.0%
! CTCATTTTCCAGCAATATAA+AGG + Chr3:19895859-19895878 None:intergenic 30.0%
! TATGATGATAACTTTAGGGA+TGG - Chr3:19895248-19895267 MsG0380012567.01.T01:intron 30.0%
! TGTTAAGGTGAAAACTTTTG+AGG + Chr3:19897588-19897607 None:intergenic 30.0%
! TTCCTTAGAAAGTTGTTTCA+TGG - Chr3:19895427-19895446 MsG0380012567.01.T01:CDS 30.0%
! TTGAAGGGGTTTGATTTAAT+TGG - Chr3:19894496-19894515 MsG0380012567.01.T01:CDS 30.0%
!! AAATGGGTTTTTCTCAGAAA+AGG - Chr3:19894056-19894075 MsG0380012567.01.T01:CDS 30.0%
!! AATGGGTTTTTCTCAGAAAA+GGG - Chr3:19894057-19894076 MsG0380012567.01.T01:CDS 30.0%
!! AGTTGATTGTTTGTTGTTCT+TGG - Chr3:19894176-19894195 MsG0380012567.01.T01:CDS 30.0%
!! TACAAAGTGTTGTCAATTAC+CGG - Chr3:19894750-19894769 MsG0380012567.01.T01:intron 30.0%
!! TTCTCTTTTATTTGCCATGT+TGG + Chr3:19897016-19897035 None:intergenic 30.0%
!! TTTCATCTGGCTATTTTCAA+GGG + Chr3:19898449-19898468 None:intergenic 30.0%
!!! AAGGGTTTTTTACTGATTCA+TGG - Chr3:19894568-19894587 MsG0380012567.01.T01:CDS 30.0%
!!! TTTTCTGATGACTTGTTTAG+TGG - Chr3:19895743-19895762 MsG0380012567.01.T01:intron 30.0%
!!! TTTTGCGTTTTAACTGGTTT+AGG - Chr3:19896543-19896562 MsG0380012567.01.T01:intron 30.0%
!!! TTTTTTAGATAGAAGGGGTT+CGG - Chr3:19895070-19895089 MsG0380012567.01.T01:intron 30.0%
AAAACGTTTCGTTGAGAGAA+AGG + Chr3:19895381-19895400 None:intergenic 35.0%
AAACACACCTGTTATTCTTG+AGG - Chr3:19896320-19896339 MsG0380012567.01.T01:intron 35.0%
AAACGTAAACTCAGTTCATG+CGG + Chr3:19898373-19898392 None:intergenic 35.0%
AAGTTCTTCTCTTGGTTGTT+TGG - Chr3:19894592-19894611 MsG0380012567.01.T01:CDS 35.0%
ACACAAAAATGTAGTTGGAG+GGG - Chr3:19895634-19895653 MsG0380012567.01.T01:CDS 35.0%
ACATGATGGTAGTTTCCAAA+AGG - Chr3:19898489-19898508 MsG0380012567.01.T01:intron 35.0%
ACCACAAATTATTCCAACTG+AGG - Chr3:19894288-19894307 MsG0380012567.01.T01:CDS 35.0%
ACTAACGAAAAAACACATCG+AGG + Chr3:19896708-19896727 None:intergenic 35.0%
ACTTGAACCAAACATAGCTA+TGG + Chr3:19898179-19898198 None:intergenic 35.0%
AGCCATGAAACAACTTTCTA+AGG + Chr3:19895432-19895451 None:intergenic 35.0%
AGTGGAAAACTCACTCAATA+TGG - Chr3:19895761-19895780 MsG0380012567.01.T01:intron 35.0%
ATAGATTGAGAATTAAGGGC+TGG + Chr3:19898573-19898592 None:intergenic 35.0%
ATCAAAATCTACTCTTCCAG+TGG + Chr3:19894461-19894480 None:intergenic 35.0%
ATGAAACTTGATGCAGTTGA+TGG - Chr3:19895701-19895720 MsG0380012567.01.T01:CDS 35.0%
ATTCCTATCCACAACTCTTT+CGG - Chr3:19895347-19895366 MsG0380012567.01.T01:CDS 35.0%
ATTTCGTTTCACGGATACTA+AGG - Chr3:19893860-19893879 MsG0380012567.01.T01:CDS 35.0%
CAAAATAAGGCATGCAACAT+TGG + Chr3:19898073-19898092 None:intergenic 35.0%
CAATCGCAGTTGCAATATAA+CGG + Chr3:19895921-19895940 None:intergenic 35.0%
CATCAATAAGTTTCCTCTTG+TGG + Chr3:19898524-19898543 None:intergenic 35.0%
CCCTTAATTCTCAATCTATC+AGG - Chr3:19898574-19898593 MsG0380012567.01.T01:intron 35.0%
CTCTTATCATTTGTCTTCAG+AGG - Chr3:19894962-19894981 MsG0380012567.01.T01:intron 35.0%
CTTGCAAACCTTTATATTGC+TGG - Chr3:19895848-19895867 MsG0380012567.01.T01:intron 35.0%
GATACTGCCTCAAACATTTA+GGG - Chr3:19896832-19896851 MsG0380012567.01.T01:intron 35.0%
GATTATAAGCTGCATAAAGC+TGG - Chr3:19895602-19895621 MsG0380012567.01.T01:CDS 35.0%
GATTCTTTGCATTCTACTCT+GGG + Chr3:19897234-19897253 None:intergenic 35.0%
GGCAAAATATATGTTTGGCA+TGG - Chr3:19894517-19894536 MsG0380012567.01.T01:CDS 35.0%
GTATCCTAGATTTCGTTTCA+CGG - Chr3:19893851-19893870 MsG0380012567.01.T01:CDS 35.0%
GTTGTGGATAGGAATCAATT+TGG + Chr3:19895342-19895361 None:intergenic 35.0%
TAATGGTCTACTAACATGCT+CGG + Chr3:19895405-19895424 None:intergenic 35.0%
TAGATTGAGAATTAAGGGCT+GGG + Chr3:19898572-19898591 None:intergenic 35.0%
TCCTCAGTTGGAATAATTTG+TGG + Chr3:19894292-19894311 None:intergenic 35.0%
TGAAAAGAAGTCTATGGCAT+TGG + Chr3:19896360-19896379 None:intergenic 35.0%
TGATACTGCCTCAAACATTT+AGG - Chr3:19896831-19896850 MsG0380012567.01.T01:intron 35.0%
TGATCATTCCTTCAATGGTA+AGG - Chr3:19897167-19897186 MsG0380012567.01.T01:CDS 35.0%
TGATTCTTTGCATTCTACTC+TGG + Chr3:19897235-19897254 None:intergenic 35.0%
TGCATCAAGTTTCATCTTCT+TGG + Chr3:19895696-19895715 None:intergenic 35.0%
TGGGATAATAACTTCCAACA+TGG - Chr3:19896999-19897018 MsG0380012567.01.T01:CDS 35.0%
TTATAGGAGCAATAGCATAG+CGG - Chr3:19894688-19894707 MsG0380012567.01.T01:CDS 35.0%
TTATTGTGAGAACGACTGAA+GGG - Chr3:19894550-19894569 MsG0380012567.01.T01:CDS 35.0%
TTCATGGAAAGTTCTTCTCT+TGG - Chr3:19894584-19894603 MsG0380012567.01.T01:CDS 35.0%
TTTCATCACCATCTACAACA+AGG - Chr3:19895501-19895520 MsG0380012567.01.T01:CDS 35.0%
! AAGTTGTGAATGTGATAGTG+AGG - Chr3:19898804-19898823 MsG0380012567.01.T01:intron 35.0%
! ACTGGAAGAGTAGATTTTGA+TGG - Chr3:19894460-19894479 MsG0380012567.01.T01:CDS 35.0%
! AGCATAACTGTCACATTTTC+CGG - Chr3:19897390-19897409 MsG0380012567.01.T01:CDS 35.0%
! AGGTTATTTCGTGTTAGCAA+TGG - Chr3:19895521-19895540 MsG0380012567.01.T01:CDS 35.0%
! CGAAATAACCTTGTTGTAGA+TGG + Chr3:19895512-19895531 None:intergenic 35.0%
! CTCTGAAGACAAATGATAAG+AGG + Chr3:19894964-19894983 None:intergenic 35.0%
! CTGTTATATAGCGGCTTTAT+AGG - Chr3:19894672-19894691 MsG0380012567.01.T01:CDS 35.0%
! GAGCAAAATACGAGTAGTTT+TGG - Chr3:19895284-19895303 MsG0380012567.01.T01:intron 35.0%
! GAGCTATCAATATGCTTTTC+AGG + Chr3:19897210-19897229 None:intergenic 35.0%
! GCTATCAATATGCTTTTCAG+GGG + Chr3:19897208-19897227 None:intergenic 35.0%
! GTAACTTGTAGTGTAGAGTT+TGG - Chr3:19894638-19894657 MsG0380012567.01.T01:CDS 35.0%
! GTATGGATTGACAATGTGTT+TGG + Chr3:19897958-19897977 None:intergenic 35.0%
! TAAAGATCCAATTTTGGGCA+AGG + Chr3:19895666-19895685 None:intergenic 35.0%
! TCACGGTAAAAATGGATTTG+TGG - Chr3:19894868-19894887 MsG0380012567.01.T01:intron 35.0%
! TCTTTGGAAACTGAACATGA+TGG - Chr3:19898475-19898494 MsG0380012567.01.T01:intron 35.0%
! TTTTGCTCCATAGCTATGTT+TGG - Chr3:19898169-19898188 MsG0380012567.01.T01:five_prime_UTR 35.0%
!! AAAGCGTTTTGCGTTTTAAC+TGG - Chr3:19896537-19896556 MsG0380012567.01.T01:intron 35.0%
!! CTTTCATCTGGCTATTTTCA+AGG + Chr3:19898450-19898469 None:intergenic 35.0%
!! GTAGATTTTGATGGTTAGAG+TGG - Chr3:19894469-19894488 MsG0380012567.01.T01:CDS 35.0%
!! TCGTTAGTTAGTTTGGTTCT+TGG - Chr3:19896720-19896739 MsG0380012567.01.T01:intron 35.0%
AACGCCGGATCTGATAATTA+CGG + Chr3:19896955-19896974 None:intergenic 40.0%
AAGAAGAGGAGAACCTTTCT+TGG + Chr3:19898869-19898888 None:intergenic 40.0%
AAGCTGAACTTGAGAGGTTA+GGG - Chr3:19897313-19897332 MsG0380012567.01.T01:CDS 40.0%
AATGGTCTACTAACATGCTC+GGG + Chr3:19895404-19895423 None:intergenic 40.0%
ACGTCCGTAATTATCAGATC+CGG - Chr3:19896948-19896967 MsG0380012567.01.T01:CDS 40.0%
ACGTGTGATCATTCCTTCAA+TGG - Chr3:19897162-19897181 MsG0380012567.01.T01:CDS 40.0%
AGTGTGACAATGGGTGTTAA+TGG - Chr3:19898220-19898239 MsG0380012567.01.T01:five_prime_UTR 40.0%
ATACGATTTCGCGACAATGT+TGG - Chr3:19898741-19898760 MsG0380012567.01.T01:intron 40.0%
ATCAATTTGGCAGGAAACTC+AGG + Chr3:19895329-19895348 None:intergenic 40.0%
ATCATGCTGCAACTGAAATC+AGG + Chr3:19897680-19897699 None:intergenic 40.0%
ATGCGACTTCTGTTACAATC+AGG - Chr3:19896043-19896062 MsG0380012567.01.T01:intron 40.0%
ATGTAGCTCCTTACCATTGA+AGG + Chr3:19897178-19897197 None:intergenic 40.0%
ATTTCGCGACAATGTTGGAA+GGG - Chr3:19898746-19898765 MsG0380012567.01.T01:intron 40.0%
CAATGTGTTTGGCAGAATCA+CGG + Chr3:19897947-19897966 None:intergenic 40.0%
CAATGTGTTTGGCAGAATCT+CGG + Chr3:19897849-19897868 None:intergenic 40.0%
CATCCACTAACTGTTGTCAA+TGG + Chr3:19894842-19894861 None:intergenic 40.0%
CATTCAATGCATGTTTGGGT+TGG - Chr3:19897702-19897721 MsG0380012567.01.T01:CDS 40.0%
CCAAAGACCTTACTTTCATC+TGG + Chr3:19898462-19898481 None:intergenic 40.0%
CCAGATGAAAGTAAGGTCTT+TGG - Chr3:19898459-19898478 MsG0380012567.01.T01:intron 40.0%
CCGAAGACTTGTATAGTTAC+CGG + Chr3:19897412-19897431 None:intergenic 40.0%
CCGGTAACTATACAAGTCTT+CGG - Chr3:19897409-19897428 MsG0380012567.01.T01:CDS 40.0%
CTATCATGAATGATGGCTGA+TGG + Chr3:19898670-19898689 None:intergenic 40.0%
CTTGTAGTGTAGAGTTTGGT+TGG - Chr3:19894642-19894661 MsG0380012567.01.T01:CDS 40.0%
CTTTGGTCCCTAAATGTTTG+AGG + Chr3:19896842-19896861 None:intergenic 40.0%
GAAAGATTCGATGACAGTGA+AGG - Chr3:19897107-19897126 MsG0380012567.01.T01:CDS 40.0%
GAAATCAGGAAGAATGGATG+TGG + Chr3:19897666-19897685 None:intergenic 40.0%
GCAAAATCTGCTACAAACTC+CGG + Chr3:19898268-19898287 None:intergenic 40.0%
GCAACTGAAATCAGGAAGAA+TGG + Chr3:19897672-19897691 None:intergenic 40.0%
GGTTAGAGTGGTGAATTGAA+GGG - Chr3:19894481-19894500 MsG0380012567.01.T01:CDS 40.0%
GTATCCGTGAAACGAAATCT+AGG + Chr3:19893858-19893877 None:intergenic 40.0%
GTATGCACTGTCTTGACTAA+TGG - Chr3:19897487-19897506 MsG0380012567.01.T01:CDS 40.0%
GTCGTCACTATCATGAATGA+TGG + Chr3:19898677-19898696 None:intergenic 40.0%
GTTAGAGTGGTGAATTGAAG+GGG - Chr3:19894482-19894501 MsG0380012567.01.T01:CDS 40.0%
GTTATTGTGAGAACGACTGA+AGG - Chr3:19894549-19894568 MsG0380012567.01.T01:CDS 40.0%
GTTCTTGGAATGTTTGTGTC+TGG - Chr3:19894191-19894210 MsG0380012567.01.T01:CDS 40.0%
GTTGAAGCAGAATGAGAACT+TGG - Chr3:19897056-19897075 MsG0380012567.01.T01:CDS 40.0%
TATGCTTACCTCAACAAGCT+CGG + Chr3:19897376-19897395 None:intergenic 40.0%
TCAGTCTTGGGATTTCTCTT+GGG - Chr3:19896980-19896999 MsG0380012567.01.T01:CDS 40.0%
TCTGTAATCCAGAGTTCGAT+CGG - Chr3:19894248-19894267 MsG0380012567.01.T01:CDS 40.0%
TCTTCCTGCAAACTATGCAA+AGG + Chr3:19897894-19897913 None:intergenic 40.0%
TGGATAGGAATCAATTTGGC+AGG + Chr3:19895338-19895357 None:intergenic 40.0%
TGGTTAGAGTGGTGAATTGA+AGG - Chr3:19894480-19894499 MsG0380012567.01.T01:CDS 40.0%
TGTGAGAGTCACGGTAAAAA+TGG - Chr3:19894860-19894879 MsG0380012567.01.T01:intron 40.0%
TGTGTTGAGAGTAACACTGT+TGG - Chr3:19895986-19896005 MsG0380012567.01.T01:intron 40.0%
TTCAGTCTTGGGATTTCTCT+TGG - Chr3:19896979-19896998 MsG0380012567.01.T01:CDS 40.0%
TTCCTCGTAGGTTTCATTGT+AGG + Chr3:19898614-19898633 None:intergenic 40.0%
! AGTTTGATCAGTGCATTGAC+TGG - Chr3:19895572-19895591 MsG0380012567.01.T01:CDS 40.0%
! CATGATAGTGACGACAAAGA+AGG - Chr3:19898682-19898701 MsG0380012567.01.T01:intron 40.0%
! GTTGTAGATGGTGATGAAAG+AGG + Chr3:19895500-19895519 None:intergenic 40.0%
! TGTGCTCTTGATAGTCAGTT+TGG - Chr3:19896681-19896700 MsG0380012567.01.T01:intron 40.0%
! TTGTGAATGTGATAGTGAGG+AGG - Chr3:19898807-19898826 MsG0380012567.01.T01:intron 40.0%
! TTGTGGGAGAAGATTCCTTT+TGG + Chr3:19898507-19898526 None:intergenic 40.0%
! TTTGCATAGTTTGCAGGAAG+AGG - Chr3:19897893-19897912 MsG0380012567.01.T01:five_prime_UTR 40.0%
! TTTGTAGCAGATTTTGCGCA+AGG - Chr3:19898271-19898290 MsG0380012567.01.T01:intron 40.0%
! TTTTGTGTCCGAAAGAGTTG+TGG + Chr3:19895358-19895377 None:intergenic 40.0%
!! CACGAAGTATTGTCGAATCT+CGG + Chr3:19893832-19893851 None:intergenic 40.0%
!! CAGAAAAGGGTTTTGTAGTG+AGG - Chr3:19894070-19894089 MsG0380012567.01.T01:CDS 40.0%
!! CATGTTTGGGTTGGTGAATT+TGG - Chr3:19897711-19897730 MsG0380012567.01.T01:CDS 40.0%
!! GAAATTATCCGAGCTTGTTG+AGG - Chr3:19897365-19897384 MsG0380012567.01.T01:CDS 40.0%
!! TTGGTTCTTTTTGCTACCAC+TGG - Chr3:19894442-19894461 MsG0380012567.01.T01:CDS 40.0%
!!! ACGAGTAGTTTTGGCAATCA+TGG - Chr3:19895293-19895312 MsG0380012567.01.T01:intron 40.0%
!!! CGAGTAGTTTTGGCAATCAT+GGG - Chr3:19895294-19895313 MsG0380012567.01.T01:intron 40.0%
!!! TCTTGGTTACTTTTGCTCAC+AGG - Chr3:19896434-19896453 MsG0380012567.01.T01:intron 40.0%
AAAAGCAAGGTGGCACAATG+TGG + Chr3:19897750-19897769 None:intergenic 45.0%
AAGGAATCTTCTCCCACAAG+AGG - Chr3:19898508-19898527 MsG0380012567.01.T01:intron 45.0%
AGCCTACAATGAAACCTACG+AGG - Chr3:19898609-19898628 MsG0380012567.01.T01:intron 45.0%
AGCTTGAAGCTGAACTTGAG+AGG - Chr3:19897307-19897326 MsG0380012567.01.T01:CDS 45.0%
AGGTGGAGAGGCTATTGATA+AGG - Chr3:19898827-19898846 MsG0380012567.01.T01:five_prime_UTR 45.0%
CACACTGCTACTAGAAATGC+AGG + Chr3:19896076-19896095 None:intergenic 45.0%
CCACCATTGACAACAGTTAG+TGG - Chr3:19894836-19894855 MsG0380012567.01.T01:intron 45.0%
CCACTAACTGTTGTCAATGG+TGG + Chr3:19894839-19894858 None:intergenic 45.0%
CGAGATTCTGCCAAACACAT+TGG - Chr3:19897847-19897866 MsG0380012567.01.T01:five_prime_UTR 45.0%
GAAGCTGAACTTGAGAGGTT+AGG - Chr3:19897312-19897331 MsG0380012567.01.T01:CDS 45.0%
GAGACGTGGCTTCTTATAGA+GGG - Chr3:19895138-19895157 MsG0380012567.01.T01:intron 45.0%
GATTTCGCGACAATGTTGGA+AGG - Chr3:19898745-19898764 MsG0380012567.01.T01:intron 45.0%
GCATTCCAATCATGCGAAAG+CGG + Chr3:19898709-19898728 None:intergenic 45.0%
GCTCGGATAATTTCCTATCC+AGG + Chr3:19897359-19897378 None:intergenic 45.0%
GGTGCAAAGCTAATTCTGAC+TGG - Chr3:19896112-19896131 MsG0380012567.01.T01:intron 45.0%
GTTCCTTCCTTGCCCAAAAT+TGG - Chr3:19895656-19895675 MsG0380012567.01.T01:CDS 45.0%
GTTCTCAGATGCGAATTCCT+TGG - Chr3:19895100-19895119 MsG0380012567.01.T01:intron 45.0%
TAAGGAGCTGCTAAAGGACT+CGG + Chr3:19895006-19895025 None:intergenic 45.0%
TAATCCAGAGTTCGATCGGA+AGG - Chr3:19894252-19894271 MsG0380012567.01.T01:CDS 45.0%
TCAGATGCGAATTCCTTGGA+TGG - Chr3:19895104-19895123 MsG0380012567.01.T01:intron 45.0%
TCCTGCAAACTATGCAAAGG+TGG + Chr3:19897891-19897910 None:intergenic 45.0%
TGAACTTGAGAGGTTAGGGT+TGG - Chr3:19897317-19897336 MsG0380012567.01.T01:CDS 45.0%
TGCAGTTGCACTCTCTGTTA+AGG + Chr3:19897603-19897622 None:intergenic 45.0%
TGTCCGAAAGAGTTGTGGAT+AGG + Chr3:19895353-19895372 None:intergenic 45.0%
TTCCAACTGAGGATCGAACT+CGG - Chr3:19894299-19894318 MsG0380012567.01.T01:CDS 45.0%
! AACAGAGAGTGCAACTGCAA+AGG - Chr3:19897604-19897623 MsG0380012567.01.T01:CDS 45.0%
! AACTTTAGGGATGGTGCAGA+TGG - Chr3:19895257-19895276 MsG0380012567.01.T01:intron 45.0%
! ACTGCATAGTTTGCAGGAAG+AGG + Chr3:19898346-19898365 None:intergenic 45.0%
! ATAGTTTGCAGGAAGAGGTG+TGG - Chr3:19897898-19897917 MsG0380012567.01.T01:five_prime_UTR 45.0%
! ATAGTTTGCAGGAAGAGGTG+TGG + Chr3:19897917-19897898 None:intergenic 45.0%
! CTTTCACTCGTGTTTCGAGT+TGG + Chr3:19898414-19898433 None:intergenic 45.0%
! CTTTTCCCTTTTCACGTCTC+CGG + Chr3:19895046-19895065 None:intergenic 45.0%
! GATCCAATTTTGGGCAAGGA+AGG + Chr3:19895662-19895681 None:intergenic 45.0%
! GGCTGATGGTGAATTGTCTT+CGG + Chr3:19898656-19898675 None:intergenic 45.0%
! GGTGAAACTGCATAGTTTGC+AGG + Chr3:19898352-19898371 None:intergenic 45.0%
! GGTGCAGTGCTGTTATATAG+CGG - Chr3:19894663-19894682 MsG0380012567.01.T01:CDS 45.0%
! GTTAGTGGATGTGAGAGTCA+CGG - Chr3:19894851-19894870 MsG0380012567.01.T01:intron 45.0%
! TGAATGTGATAGTGAGGAGG+TGG - Chr3:19898810-19898829 MsG0380012567.01.T01:intron 45.0%
! TTTTCCCTTTTCACGTCTCC+GGG + Chr3:19895045-19895064 None:intergenic 45.0%
!! CAGTGCATTGACTGGAAGTA+AGG - Chr3:19895580-19895599 MsG0380012567.01.T01:CDS 45.0%
!! CTGCATTTCTAGTAGCAGTG+TGG - Chr3:19896074-19896093 MsG0380012567.01.T01:intron 45.0%
!! GAAGTATTGTCGAATCTCGG+AGG + Chr3:19893829-19893848 None:intergenic 45.0%
!!! GGATTTTTAGGTCTCCGCAA+CGG + Chr3:19895900-19895919 None:intergenic 45.0%
!!! TATTTTATTTTATTTTTTTC+AGG - Chr3:19894414-19894433 MsG0380012567.01.T01:CDS 5.0%
AAGGTCCGCTTTCGCATGAT+TGG - Chr3:19898701-19898720 MsG0380012567.01.T01:intron 50.0%
AGCTTTGCACCTGCTATTGC+AGG + Chr3:19896103-19896122 None:intergenic 50.0%
AGGTGAGTTTCGAGCTGACA+CGG - Chr3:19898291-19898310 MsG0380012567.01.T01:intron 50.0%
CCAAGACTGAAGAGAAACGC+CGG + Chr3:19896970-19896989 None:intergenic 50.0%
CGGCGTTTCTCTTCAGTCTT+GGG - Chr3:19896968-19896987 MsG0380012567.01.T01:CDS 50.0%
CTTACCTTCCGATCGAACTC+TGG + Chr3:19894259-19894278 None:intergenic 50.0%
GCTGGAAAATGAGGCTGATG+CGG - Chr3:19895866-19895885 MsG0380012567.01.T01:intron 50.0%
GGAGACGTGGCTTCTTATAG+AGG - Chr3:19895137-19895156 MsG0380012567.01.T01:intron 50.0%
GGAGGTTAAGGAGCTGCTAA+AGG + Chr3:19895012-19895031 None:intergenic 50.0%
GGGTTGTTTGAGGGAGGTTA+AGG + Chr3:19895024-19895043 None:intergenic 50.0%
TAACCTCCCTCAAACAACCC+CGG - Chr3:19895024-19895043 MsG0380012567.01.T01:intron 50.0%
TCCAACTGAGGATCGAACTC+GGG - Chr3:19894300-19894319 MsG0380012567.01.T01:CDS 50.0%
TCCTGTTGAAGGACCATCCA+AGG + Chr3:19895120-19895139 None:intergenic 50.0%
TCCTTGGATGGTCCTTCAAC+AGG - Chr3:19895116-19895135 MsG0380012567.01.T01:intron 50.0%
TGAATGCGTCAAGCCTGGAT+AGG - Chr3:19897343-19897362 MsG0380012567.01.T01:CDS 50.0%
TGTTACAGCGCTGCTATAGC+CGG + Chr3:19894772-19894791 None:intergenic 50.0%
! AGGAAGAGGTGTGGTGACAT+TGG + Chr3:19898332-19898351 None:intergenic 50.0%
! GACTATCAAGAGCACATGCG+AGG + Chr3:19896677-19896696 None:intergenic 50.0%
! GCCACCTTTGCATAGTTTGC+AGG - Chr3:19897887-19897906 MsG0380012567.01.T01:five_prime_UTR 50.0%
! TTTCCCTTTTCACGTCTCCG+GGG + Chr3:19895044-19895063 None:intergenic 50.0%
! TTTTGAATTGCGGCCCGCAA+CGG + Chr3:19895944-19895963 None:intergenic 50.0%
!! CAGTTGATGGACGAAGTCGA+AGG - Chr3:19895714-19895733 MsG0380012567.01.T01:CDS 50.0%
!! CTGTTGTCAATGGTGGATCG+AGG + Chr3:19894832-19894851 None:intergenic 50.0%
!!! TGGCTTGCAGCTGCTTTTAC+TGG - Chr3:19894888-19894907 MsG0380012567.01.T01:intron 50.0%
ACAACCCCGGAGACGTGAAA+AGG - Chr3:19895037-19895056 MsG0380012567.01.T01:intron 55.0%
ACCCGAGTTCGATCCTCAGT+TGG + Chr3:19894304-19894323 None:intergenic 55.0%
ACGTCTCCGGGGTTGTTTGA+GGG + Chr3:19895033-19895052 None:intergenic 55.0%
CAACCCCGGAGACGTGAAAA+GGG - Chr3:19895038-19895057 MsG0380012567.01.T01:intron 55.0%
CCGGCGTTTCTCTTCAGTCT+TGG - Chr3:19896967-19896986 MsG0380012567.01.T01:CDS 55.0%
GAAGCCACGTCTCCTGTTGA+AGG + Chr3:19895131-19895150 None:intergenic 55.0%
GGACATGAATGCGTCAAGCC+TGG - Chr3:19897338-19897357 MsG0380012567.01.T01:CDS 55.0%
GTGTGGTGACCTGCAATAGC+AGG - Chr3:19896091-19896110 MsG0380012567.01.T01:intron 55.0%
TCGAACTCGGGTTCTTCCGA+TGG - Chr3:19894312-19894331 MsG0380012567.01.T01:CDS 55.0%
TGCAACTGCGATTGCCGTTG+CGG - Chr3:19895927-19895946 MsG0380012567.01.T01:intron 55.0%
TGGTCCTTCAACAGGAGACG+TGG - Chr3:19895124-19895143 MsG0380012567.01.T01:intron 55.0%
TTTCGAGCTGACACGGCTAG+TGG - Chr3:19898298-19898317 MsG0380012567.01.T01:intron 55.0%
! AGGAAGAGGTGTGGTACTCG+CGG - Chr3:19897907-19897926 MsG0380012567.01.T01:five_prime_UTR 55.0%
! GTGATAGTGAGGAGGTGGAG+AGG - Chr3:19898815-19898834 MsG0380012567.01.T01:intron 55.0%
!!! GCAGCTGCTTTTACTGGAGC+TGG - Chr3:19894894-19894913 MsG0380012567.01.T01:intron 55.0%
ATGCGGTTGCGATGCCGTTG+CGG - Chr3:19895883-19895902 MsG0380012567.01.T01:intron 60.0%
CACGTCTCCGGGGTTGTTTG+AGG + Chr3:19895034-19895053 None:intergenic 60.0%
GCAACTGCGATTGCCGTTGC+GGG - Chr3:19895928-19895947 MsG0380012567.01.T01:intron 60.0%
TCTCCGGGGTTGTTTGAGGG+AGG + Chr3:19895030-19895049 None:intergenic 60.0%
! GGAAGAGGTGTGGTACTCGC+GGG - Chr3:19897908-19897927 MsG0380012567.01.T01:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 19893776 19898942 19893776 ID=MsG0380012567.01;Name=MsG0380012567.01
Chr3 mRNA 19893776 19898942 19893776 ID=MsG0380012567.01.T01;Parent=MsG0380012567.01;Name=MsG0380012567.01.T01;_AED=0.24;_eAED=0.30;_QI=562|0.66|0.5|1|0.66|0.5|4|0|762
Chr3 exon 19898824 19898942 19898824 ID=MsG0380012567.01.T01:exon:3759;Parent=MsG0380012567.01.T01
Chr3 exon 19896936 19898282 19896936 ID=MsG0380012567.01.T01:exon:3760;Parent=MsG0380012567.01.T01
Chr3 exon 19895307 19895753 19895307 ID=MsG0380012567.01.T01:exon:3761;Parent=MsG0380012567.01.T01
Chr3 exon 19893776 19894713 19893776 ID=MsG0380012567.01.T01:exon:3762;Parent=MsG0380012567.01.T01
Chr3 five_prime_UTR 19898824 19898942 19898824 ID=MsG0380012567.01.T01:five_prime_utr;Parent=MsG0380012567.01.T01
Chr3 five_prime_UTR 19897840 19898282 19897840 ID=MsG0380012567.01.T01:five_prime_utr;Parent=MsG0380012567.01.T01
Chr3 CDS 19896936 19897839 19896936 ID=MsG0380012567.01.T01:cds;Parent=MsG0380012567.01.T01
Chr3 CDS 19895307 19895753 19895307 ID=MsG0380012567.01.T01:cds;Parent=MsG0380012567.01.T01
Chr3 CDS 19893776 19894713 19893776 ID=MsG0380012567.01.T01:cds;Parent=MsG0380012567.01.T01
Gene Sequence

>MsG0380012567.01.T01

ATGGATTTGTGGCTTGCAGCTGCTTTTACTGGAGCTGGTTATTTAGCTAAATATTGGAAAAAGAGTTTGGAAAATGGTGATACCTCTTATCATTTGTCTTCAGAGGATTCGAATTTTGAGAAAGCCGAGTCCTTTAGCAGCTCCTTAACCTCCCTCAAACAACCCCGGAGACGTGAAAAGGGAAAAGATGTTTTTTTAGATAGAAGGGGTTCGGATGAGATGTTCTCAGATGCGAATTCCTTGGATGGTCCTTCAACAGGAGACGTGGCTTCTTATAGAGGGTTCAATTGTGAAAAAGTAAGACATTTTCAGAACTATAATGAGAGTGATTTTCTATCGATATCGAACTTAGCAGTGCCATTATCACCATATGATGATAACTTTAGGGATGGTGCAGATGGAAATGAGCAAAATACGAGTAGTTTTGGCAATCATGGGTTCTTTCGTCCTGAGTTTCCTGCCAAATTGATTCCTATCCACAACTCTTTCGGACACAAAACCTTTCTCTCAACGAAACGTTTTCCCGAGCATGTTAGTAGACCATTAAATTCCTTAGAAAGTTGTTTCATGGCTCAGCTATATAAAGAGCATGCCAAAATGGAAGAATATGTCTTTAGTCCTCTTTCATCACCATCTACAACAAGGTTATTTCGTGTTAGCAATGGTAGCCGAATACTGAATAGAGAAAATTGTAGTTTGATCAGTGCATTGACTGGAAGTAAGGATTATAAGCTGCATAAAGCTGGTCGAGAAAAACACAAAAATGTAGTTGGAGGGGTTCCTTCCTTGCCCAAAATTGGATCTTTAAATGATACCAAGAAGATGAAACTTGATGCAGTTGATGGACGAAGTCGAAGGTCAAGCTTTTCTGATGACTTGTTTAGTGGAAAACTCACTCAATATGATCCGGCGTTTCTCTTCAGTCTTGGGATTTCTCTTGGGATAATAACTTCCAACATGGCAAATAAAAGAGAAATAGTCAAGATAAGAGAACTGTTGAAGCAGAATGAGAACTTGGTTCAAGATCTACAAGACGAACTCGATATGAAAGATTCGATGACAGTGAAGGAGTTACAAAATGAAAATTATGGTTCACAAGATACGTGTGATCATTCCTTCAATGGTAAGGAGCTACATGAATTTTCCCCTGAAAAGCATATTGATAGCTCTCCCAGAGTAGAATGCAAAGAATCATATGATAAAAAGGAAGAACAGAGTTCAGAGTCTATGAGCAAAATTGAAGCTGAGCTTGAAGCTGAACTTGAGAGGTTAGGGTTGGACATGAATGCGTCAAGCCTGGATAGGAAATTATCCGAGCTTGTTGAGGTAAGCATAACTGTCACATTTTCCGATATTGGAATTGTGGCAGTAACTGAAAATTTCACAGCTATAGATGCTAGTTTAAGTTTTCTCTGTCCAATGTTGCATGCCTTATTTTGCTTTCAAGTTCTACCATGTATGTTTGTTTTGATAGCCATACAAAGTTTCTTTTTCCAGTGTAAAGTAAATCTCATATTTTGCTCCATAGCTATGTTTGGTTCAAGTAATCAAGTTAACAATATTGTTAGTGTGACAATGGGTGTTAATGGTGCAAAATTCTTGCAGATTGATCCGGAGTTTGTAGCAGATTTTGCGCAAGGTGAGTTTCGAGCTGACACGGCTAGTGGAGCAGATGCCAATGTCACCACACCTCTTCCTGCAAACTATGCAGTTTCACCGCATGAACTGAGTTTACGTTTGCACGAAGTCATACAAAACCAACTCGAAACACGAGTGAAAGAGCTTGAGATAGCCCTTGAAAATAGCCAGATGAAAGTAAGGTCTTTGGAAACTGAACATGATGGTAGTTTCCAAAAGGAATCTTCTCCCACAAGAGGAAACTTATTGATGACTCATGAAGATTGCAACACTATGTCCCAGCCCTTAATTCTCAATCTATCAGGTGAAGCTCTTGAAGCCTACAATGAAACCTACGAGGAATTAATAAATATGAATGATTCCGAAGACAATTCACCATCAGCCATCATTCATGATAGTGACGACAAAGAAGGTCCGCTTTCGCATGATTGGAATGCAACAGTTTTTGAATACGATTTCGCGACAATGTTGGAAGGGCAAAGCTCTAGTGAATTGAATGTTAGTGGAGATGAAAGTTGTGAATGTGATAGTGAGGAGGTGGAGAGGCTATTGATAAGGCAAATTGTTGAAAGAACCAAGAAAGGTTCTCCTCTTCTTCAAAATGCAAAAAAGATATTGTATTCTATGGATGAAGATGAACAACAACATTGA

Protein sequence

>MsG0380012567.01.T01

MDLWLAAAFTGAGYLAKYWKKSLENGDTSYHLSSEDSNFEKAESFSSSLTSLKQPRRREKGKDVFLDRRGSDEMFSDANSLDGPSTGDVASYRGFNCEKVRHFQNYNESDFLSISNLAVPLSPYDDNFRDGADGNEQNTSSFGNHGFFRPEFPAKLIPIHNSFGHKTFLSTKRFPEHVSRPLNSLESCFMAQLYKEHAKMEEYVFSPLSSPSTTRLFRVSNGSRILNRENCSLISALTGSKDYKLHKAGREKHKNVVGGVPSLPKIGSLNDTKKMKLDAVDGRSRRSSFSDDLFSGKLTQYDPAFLFSLGISLGIITSNMANKREIVKIRELLKQNENLVQDLQDELDMKDSMTVKELQNENYGSQDTCDHSFNGKELHEFSPEKHIDSSPRVECKESYDKKEEQSSESMSKIEAELEAELERLGLDMNASSLDRKLSELVEVSITVTFSDIGIVAVTENFTAIDASLSFLCPMLHALFCFQVLPCMFVLIAIQSFFFQCKVNLIFCSIAMFGSSNQVNNIVSVTMGVNGAKFLQIDPEFVADFAQGEFRADTASGADANVTTPLPANYAVSPHELSLRLHEVIQNQLETRVKELEIALENSQMKVRSLETEHDGSFQKESSPTRGNLLMTHEDCNTMSQPLILNLSGEALEAYNETYEELINMNDSEDNSPSAIIHDSDDKEGPLSHDWNATVFEYDFATMLEGQSSSELNVSGDESCECDSEEVERLLIRQIVERTKKGSPLLQNAKKILYSMDEDEQQH*