AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036596.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036596.01.T01 MTR_7g014330 91.485 458 39 0 1 458 1 458 0.0 868
MsG0780036596.01.T01 MTR_7g014250 88.865 458 51 0 1 458 1 458 0.0 845
MsG0780036596.01.T01 MTR_7g014230 89.427 454 48 0 2 455 4 457 0.0 837
MsG0780036596.01.T01 MTR_7g014360 81.395 387 52 1 72 458 22 388 0.0 642
MsG0780036596.01.T01 MTR_7g014310 75.976 333 26 2 108 440 29 307 2.94e-174 491
MsG0780036596.01.T01 MTR_6g015815 47.447 470 219 12 2 458 8 462 2.93e-146 426
MsG0780036596.01.T01 MTR_6g015850 47.682 453 214 11 14 458 22 459 4.12e-141 412
MsG0780036596.01.T01 MTR_6g015830 46.039 467 228 11 3 458 9 462 1.08e-138 406
MsG0780036596.01.T01 MTR_6g015320 45.572 463 230 10 3 458 9 456 9.36e-137 401
MsG0780036596.01.T01 MTR_6g015315 46.313 434 219 8 30 458 30 454 1.27e-133 393
MsG0780036596.01.T01 MTR_7g014610 40.632 475 257 11 3 458 9 477 1.50e-109 332
MsG0780036596.01.T01 MTR_7g014200 40.980 449 249 10 22 458 26 470 9.50e-108 327
MsG0780036596.01.T01 MTR_7g014160 40.789 456 243 13 21 456 25 473 8.86e-106 322
MsG0780036596.01.T01 MTR_7g013850 38.074 457 250 13 27 456 30 480 7.23e-96 297
MsG0780036596.01.T01 MTR_7g014620 38.565 446 239 9 22 456 11 432 3.28e-90 281
MsG0780036596.01.T01 MTR_2g089765 38.235 476 254 13 3 452 17 478 8.41e-87 274
MsG0780036596.01.T01 MTR_3g028210 35.111 450 265 10 22 456 27 464 2.38e-81 259
MsG0780036596.01.T01 MTR_2g089670 37.444 446 251 13 22 452 41 473 6.56e-79 253
MsG0780036596.01.T01 MTR_7g015860 35.294 476 257 13 3 452 6 456 9.97e-79 252
MsG0780036596.01.T01 MTR_6g015310 39.335 361 162 9 76 433 25 331 5.41e-77 244
MsG0780036596.01.T01 MTR_8g012750 34.848 462 271 11 18 456 18 472 1.10e-76 247
MsG0780036596.01.T01 MTR_3g087640 34.341 463 263 12 20 456 25 472 1.02e-70 232
MsG0780036596.01.T01 MTR_2g089650 32.696 471 264 15 18 458 18 465 6.49e-68 224
MsG0780036596.01.T01 MTR_2g089735 33.408 449 246 13 39 458 39 463 1.15e-67 223
MsG0780036596.01.T01 MTR_2g089755 32.527 455 271 13 26 458 37 477 1.30e-66 221
MsG0780036596.01.T01 MTR_7g014630 41.877 277 142 6 3 267 10 279 2.39e-64 212
MsG0780036596.01.T01 MTR_7g014205 78.626 131 17 1 295 425 1 120 1.44e-63 201
MsG0780036596.01.T01 MTR_7g014210 86.087 115 15 1 314 427 24 138 1.63e-60 195
MsG0780036596.01.T01 MTR_2g089665 30.682 440 190 8 1 431 1 334 1.35e-49 172
MsG0780036596.01.T01 MTR_7g014180 47.333 150 76 1 22 168 24 173 9.51e-41 144
MsG0780036596.01.T01 MTR_3g435300 37.354 257 136 7 20 262 18 263 9.76e-41 147
MsG0780036596.01.T01 MTR_7g014340 88.571 70 8 0 1 70 1 70 1.18e-35 127
MsG0780036596.01.T01 MTR_7g014670 36.842 190 114 4 272 456 71 259 4.20e-33 126
MsG0780036596.01.T01 MTR_7g014220 83.607 61 10 0 14 74 6 66 2.79e-27 104
MsG0780036596.01.T01 MTR_3g026310 26.969 419 248 17 20 413 18 403 2.50e-22 99.4
MsG0780036596.01.T01 MTR_0190s0020 28.700 446 231 20 23 437 26 415 3.99e-22 99.0
MsG0780036596.01.T01 MTR_3g026950 25.322 466 272 18 32 456 21 451 1.22e-21 97.4
MsG0780036596.01.T01 MTR_7g085930 26.526 426 269 13 57 456 54 461 3.47e-21 96.3
MsG0780036596.01.T01 MTR_3g049150 26.164 451 264 18 34 452 30 443 3.53e-21 96.3
MsG0780036596.01.T01 MTR_4g094842 26.802 444 267 19 3 427 5 409 6.91e-21 95.1
MsG0780036596.01.T01 MTR_8g075610 25.128 390 225 17 42 409 30 374 7.22e-21 94.7
MsG0780036596.01.T01 MTR_3g101930 28.497 386 221 15 48 412 56 407 1.27e-19 91.3
MsG0780036596.01.T01 MTR_4g022825 26.087 414 250 16 20 413 18 395 1.74e-19 90.9
MsG0780036596.01.T01 MTR_3g101900 25.248 404 251 13 26 412 30 399 1.79e-19 90.9
MsG0780036596.01.T01 MTR_3g088420 25.120 418 242 16 20 413 18 388 3.60e-19 89.7
MsG0780036596.01.T01 MTR_2g064495 22.877 424 281 15 42 452 39 429 8.12e-19 89.0
MsG0780036596.01.T01 MTR_4g094835 23.284 408 253 16 26 413 32 399 3.55e-18 87.0
MsG0780036596.01.T01 MTR_3g098980 24.816 407 252 15 62 453 66 433 4.25e-18 86.7
MsG0780036596.01.T01 MTR_4g127650 24.622 463 284 18 24 456 29 456 4.81e-18 86.7
MsG0780036596.01.T01 MTR_2g105330 22.877 424 281 15 42 452 39 429 6.19e-18 86.3
MsG0780036596.01.T01 MTR_7g085990 26.220 328 197 7 56 364 49 350 6.70e-18 86.3
MsG0780036596.01.T01 MTR_7g086000 23.909 481 310 14 5 456 4 457 5.06e-17 83.6
MsG0780036596.01.T01 MTR_8g096530 24.789 355 231 12 62 410 59 383 8.66e-17 82.8
MsG0780036596.01.T01 MTR_4g022800 28.979 421 231 19 20 413 18 397 1.45e-16 82.0
MsG0780036596.01.T01 MTR_8g079710 24.476 429 250 18 26 424 29 413 2.01e-16 81.6
MsG0780036596.01.T01 MTR_4g022720 25.542 415 246 15 20 413 18 390 4.01e-16 80.5
MsG0780036596.01.T01 MTR_4g022760 27.321 377 198 19 20 367 18 347 2.01e-14 75.1
MsG0780036596.01.T01 MTR_4g097090 23.284 408 261 13 24 408 28 406 4.07e-14 74.7
MsG0780036596.01.T01 MTR_7g084940 24.490 441 258 17 39 452 48 440 7.45e-14 73.6
MsG0780036596.01.T01 MTR_7g027175 23.295 352 238 11 62 409 68 391 1.35e-13 72.8
MsG0780036596.01.T01 MTR_4g022290 25.118 422 240 17 20 413 24 397 1.24e-12 70.1
MsG0780036596.01.T01 MTR_7g084910 26.557 305 174 14 39 328 49 318 5.32e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036596.01.T01 AT3G29635 42.117 444 230 13 24 456 27 454 2.12e-100 308
MsG0780036596.01.T01 AT3G29670 40.766 444 235 11 24 458 27 451 6.50e-99 304
MsG0780036596.01.T01 AT5G39090 39.773 440 242 11 23 456 25 447 2.22e-97 300
MsG0780036596.01.T01 AT5G39050 38.511 470 260 12 3 456 11 467 5.20e-94 292
MsG0780036596.01.T01 AT5G39080 37.419 465 261 12 4 452 7 457 3.60e-93 290
MsG0780036596.01.T01 AT5G61160 37.447 470 259 11 3 458 4 452 1.89e-92 287
MsG0780036596.01.T01 AT3G29590 39.186 467 242 13 4 456 10 448 5.00e-88 276
MsG0780036596.01.T01 AT3G29680 39.408 439 238 12 24 452 23 443 3.78e-86 271
MsG0780036596.01.T01 AT1G03940 34.664 476 269 14 3 456 9 464 6.68e-78 250
MsG0780036596.01.T01 AT1G03495 35.608 337 185 10 20 340 24 344 2.91e-56 190
MsG0780036596.01.T01 AT3G29720 38.947 190 100 4 99 286 26 201 4.12e-31 119
MsG0780036596.01.T01 AT2G19070 23.129 441 290 13 39 456 37 451 8.51e-23 100
MsG0780036596.01.T01 AT5G23940 25.459 436 267 18 26 436 25 427 3.95e-22 99.4
MsG0780036596.01.T01 AT5G48930 23.628 419 277 15 42 448 39 426 6.50e-19 89.4
MsG0780036596.01.T01 AT3G47170 26.855 283 169 10 62 328 70 330 3.92e-18 87.0
MsG0780036596.01.T01 AT3G29690 34.459 148 85 4 312 455 38 177 1.20e-17 81.3
MsG0780036596.01.T01 AT5G67160 23.951 405 248 10 20 409 23 382 9.68e-17 82.4
MsG0780036596.01.T01 AT5G67150 25.176 425 259 14 10 413 13 399 1.61e-16 82.0
MsG0780036596.01.T01 AT5G07850 25.000 380 229 12 54 413 62 405 3.75e-15 77.8
MsG0780036596.01.T01 AT1G03390 23.116 398 258 12 42 425 59 422 2.53e-14 75.5
MsG0780036596.01.T01 AT3G48720 24.225 355 231 13 62 409 61 384 3.50e-14 74.7
MsG0780036596.01.T01 AT1G28680 22.131 366 232 9 62 412 62 389 4.66e-14 74.3
MsG0780036596.01.T01 AT1G28680 22.314 363 237 8 62 417 62 386 7.44e-14 73.6
MsG0780036596.01.T01 AT1G31490 22.683 410 268 12 10 409 13 383 9.13e-14 73.6
MsG0780036596.01.T01 AT5G07860 24.176 364 236 11 54 408 64 396 6.84e-13 70.9
MsG0780036596.01.T01 AT5G57840 22.440 459 295 14 16 452 15 434 2.45e-12 68.9

Find 74 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACTCCTGCAACATATTT+TGG 0.089197 7:-10229327 MsG0780036596.01.T01:CDS
GCTGATTTCAATCATCTTTC+AGG 0.150127 7:-10229963 MsG0780036596.01.T01:CDS
ATTGAAAATTTCTATGATTT+TGG 0.163660 7:+10230280 None:intergenic
TGTTGAAACAAGTGAGTTAT+TGG 0.246021 7:-10229277 MsG0780036596.01.T01:CDS
GAAACCATTTCCACTTTCTT+TGG 0.257229 7:+10229060 None:intergenic
GTTCCAGAAGATTCATTTAG+AGG 0.266808 7:-10229564 MsG0780036596.01.T01:CDS
GTACTATAAACCTCAAATTT+AGG 0.281913 7:+10229102 None:intergenic
ACATGATCAAGCTTCTGTTT+TGG 0.289012 7:-10229883 MsG0780036596.01.T01:CDS
CCAATTGAAAATCCATAGTT+TGG 0.297340 7:+10229840 None:intergenic
AACCAACAATAGAAGCTTAA+TGG 0.299594 7:-10229601 MsG0780036596.01.T01:CDS
TTACTTTCTTCGACATACTA+TGG 0.303451 7:-10230208 MsG0780036596.01.T01:CDS
ATTATTTCAATTATCTCGTT+TGG 0.307673 7:-10229541 MsG0780036596.01.T01:CDS
GTTGAAACAAGTGAGTTATT+GGG 0.310202 7:-10229276 MsG0780036596.01.T01:CDS
ACGCAAAATATTTGAGTGAT+TGG 0.311894 7:-10229638 MsG0780036596.01.T01:CDS
ACAATAGAAGCTTAATGGTT+TGG 0.327026 7:-10229596 MsG0780036596.01.T01:CDS
AATCCTCTAAATGAATCTTC+TGG 0.330893 7:+10229561 None:intergenic
AACCATTAAGCTTCTATTGT+TGG 0.335300 7:+10229599 None:intergenic
TTTGGATATTGAAAAGCTTA+AGG 0.336799 7:-10229523 MsG0780036596.01.T01:CDS
CAATAGAAGCTTAATGGTTT+GGG 0.346870 7:-10229595 MsG0780036596.01.T01:CDS
TGTCTTTCTGATTGTAGAAA+TGG 0.347109 7:-10229015 MsG0780036596.01.T01:CDS
GAGGTTTATAGTACTGATTT+TGG 0.352559 7:-10229093 MsG0780036596.01.T01:CDS
TTGTATCCATAGCTTATGCC+TGG 0.358494 7:-10229434 MsG0780036596.01.T01:CDS
TAGAAGAAAATTCTTTGAAC+AGG 0.373178 7:+10230173 None:intergenic
TGCTGGTTCACCTAAATTTG+AGG 0.384622 7:-10229112 MsG0780036596.01.T01:CDS
TGAAGTGTTAAGTGAAGCTT+TGG 0.391195 7:-10229229 MsG0780036596.01.T01:CDS
ATTTCTGATGTTAAAGCAAT+TGG 0.393974 7:-10229138 MsG0780036596.01.T01:CDS
TCATGTGAAATATTCAAGTT+AGG 0.394263 7:+10229900 None:intergenic
CAATTTCCAAAATATGTTGC+AGG 0.404618 7:+10229321 None:intergenic
CCTTTGATGAATTTAATGAT+TGG 0.405006 7:+10230020 None:intergenic
ATTTGTAGTGTCAAAACAAA+AGG 0.406667 7:-10229499 MsG0780036596.01.T01:CDS
TTAAAAGATGGAGTGTTGAA+TGG 0.421534 7:-10229201 MsG0780036596.01.T01:CDS
TTGCTTCGCTCTTTGTCAAA+GGG 0.440215 7:-10228942 MsG0780036596.01.T01:CDS
AATGGTGATGGTGTTGAGAT+AGG 0.443549 7:-10228997 MsG0780036596.01.T01:CDS
AAAACCAAAGAAAGTGGAAA+TGG 0.448778 7:-10229064 MsG0780036596.01.T01:CDS
GCTTTGGAAACTTTAAAAGA+TGG 0.454178 7:-10229213 MsG0780036596.01.T01:CDS
ATTACATTTCTATCATAGAA+AGG 0.455442 7:+10229681 None:intergenic
TTTGCTTCGCTCTTTGTCAA+AGG 0.460307 7:-10228943 MsG0780036596.01.T01:CDS
AGTATGTCGAAGAAAGTAAG+AGG 0.475712 7:+10230212 None:intergenic
AAACTCATGTGGCAAACAAA+GGG 0.475884 7:+10229707 None:intergenic
TTGAAACAAGTGAGTTATTG+GGG 0.479171 7:-10229275 MsG0780036596.01.T01:CDS
CCAAAATATGTTGCAGGAGT+CGG 0.485029 7:+10229327 None:intergenic
ATGGTTTCTATAGATAGAAC+TGG 0.490163 7:-10229045 MsG0780036596.01.T01:CDS
GTTAAAGCAATTGGTGCTGC+TGG 0.491334 7:-10229129 MsG0780036596.01.T01:CDS
TGTCAAAACAAAAGGGTACT+AGG 0.501108 7:-10229491 MsG0780036596.01.T01:CDS
AAGAAAATTCTTTGAACAGG+TGG 0.502827 7:+10230176 None:intergenic
AGCTTTCATTCTGCATACCC+AGG 0.512729 7:+10229416 None:intergenic
TGGCTTTGAATATTGATTGT+CGG 0.525216 7:-10229365 MsG0780036596.01.T01:CDS
TTGAGTGATTGGTTAAAGCA+AGG 0.525666 7:-10229627 MsG0780036596.01.T01:CDS
CTATGATAGAAATGTAATCA+AGG 0.525898 7:-10229676 MsG0780036596.01.T01:CDS
CAACAAAAGTTGACAAGTGA+AGG 0.526815 7:+10229454 None:intergenic
GTTTGGGAAGAAGGGTGTTG+AGG 0.530313 7:+10230123 None:intergenic
TCTACAATCAGAAAGACAAA+AGG 0.534606 7:+10229020 None:intergenic
GCATACCCAGGCATAAGCTA+TGG 0.548203 7:+10229428 None:intergenic
TTGTGGAAAACCAAAGAAAG+TGG 0.548911 7:-10229070 MsG0780036596.01.T01:CDS
TGTATCCATAGCTTATGCCT+GGG 0.550290 7:-10229433 MsG0780036596.01.T01:CDS
AAGGGTGTTGAGGAAGAGTG+AGG 0.553924 7:+10230133 None:intergenic
TTTGTAGTGTCAAAACAAAA+GGG 0.558518 7:-10229498 MsG0780036596.01.T01:CDS
AGAGGAAGTGATGTTTCTGA+AGG 0.559795 7:+10230230 None:intergenic
GTATTTGTGTAGCTTCAGAA+AGG 0.568193 7:+10229934 None:intergenic
CCAATCATTAAATTCATCAA+AGG 0.568697 7:-10230020 MsG0780036596.01.T01:CDS
AAAACTCATGTGGCAAACAA+AGG 0.574819 7:+10229706 None:intergenic
AGGAAGAGTGAGGCTTGGTG+TGG 0.588661 7:+10230143 None:intergenic
CAAATGAGATGACCCAAAAG+AGG 0.588902 7:+10230062 None:intergenic
TGTTGAGGAAGAGTGAGGCT+TGG 0.589306 7:+10230138 None:intergenic
ATCAGCATCAGATTCAGCTA+TGG 0.602424 7:+10229980 None:intergenic
TCTGATTGTAGAAATGGTGA+TGG 0.615354 7:-10229009 MsG0780036596.01.T01:CDS
AAATATGTTGCAGGAGTCGG+TGG 0.620986 7:+10229330 None:intergenic
AGTGATTGGTTAAAGCAAGG+TGG 0.623091 7:-10229624 MsG0780036596.01.T01:CDS
GGAAGAGTGAGGCTTGGTGT+GGG 0.646190 7:+10230144 None:intergenic
TAGAAAGGACAAAACTCATG+TGG 0.652604 7:+10229696 None:intergenic
AACTCATGTGGCAAACAAAG+GGG 0.672677 7:+10229708 None:intergenic
TGAAACAAGTGAGTTATTGG+GGG 0.676029 7:-10229274 MsG0780036596.01.T01:CDS
ATTGGCTTGTGAGAATCATG+AGG 0.731339 7:+10230038 None:intergenic
GGAAGATGGACTAATCGTGG+CGG 0.752782 7:-10229253 MsG0780036596.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAAAATTTCTATGATTT+TGG + Chr7:10228937-10228956 None:intergenic 15.0%
!! ATTACATTTCTATCATAGAA+AGG + Chr7:10229536-10229555 None:intergenic 20.0%
!! ATTATTTCAATTATCTCGTT+TGG - Chr7:10229673-10229692 MsG0780036596.01.T01:CDS 20.0%
!!! GAAAGTGATTTTTTTAGTTT+GGG + Chr7:10229110-10229129 None:intergenic 20.0%
!!! TGAAAGTGATTTTTTTAGTT+TGG + Chr7:10229111-10229130 None:intergenic 20.0%
!!! TTTCATTTTTATCCTCTTTT+GGG - Chr7:10229140-10229159 MsG0780036596.01.T01:CDS 20.0%
!!! TTTTCATTTTTATCCTCTTT+TGG - Chr7:10229139-10229158 MsG0780036596.01.T01:CDS 20.0%
! AAATCCATAGTTTGGAAAAA+CGG + Chr7:10229369-10229388 None:intergenic 25.0%
! ATTTCTGATGTTAAAGCAAT+TGG - Chr7:10230076-10230095 MsG0780036596.01.T01:CDS 25.0%
! ATTTGTAGTGTCAAAACAAA+AGG - Chr7:10229715-10229734 MsG0780036596.01.T01:CDS 25.0%
! CCAATCATTAAATTCATCAA+AGG - Chr7:10229194-10229213 MsG0780036596.01.T01:CDS 25.0%
! CCTTTGATGAATTTAATGAT+TGG + Chr7:10229197-10229216 None:intergenic 25.0%
! CTATGATAGAAATGTAATCA+AGG - Chr7:10229538-10229557 MsG0780036596.01.T01:CDS 25.0%
! GTACTATAAACCTCAAATTT+AGG + Chr7:10230115-10230134 None:intergenic 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG + Chr7:10229044-10229063 None:intergenic 25.0%
! TTTGGATATTGAAAAGCTTA+AGG - Chr7:10229691-10229710 MsG0780036596.01.T01:CDS 25.0%
! TTTGTAGTGTCAAAACAAAA+GGG - Chr7:10229716-10229735 MsG0780036596.01.T01:CDS 25.0%
!! AATTTTTGTTCATCGTTACT+TGG - Chr7:10230043-10230062 MsG0780036596.01.T01:CDS 25.0%
!! GACTTCTTTTATCAAATCTT+GGG - Chr7:10229436-10229455 MsG0780036596.01.T01:CDS 25.0%
!! TATTTTGCGTCTAATTCATT+TGG + Chr7:10229566-10229585 None:intergenic 25.0%
!! TCATGTGAAATATTCAAGTT+AGG + Chr7:10229317-10229336 None:intergenic 25.0%
!!! ATTTTTTTAGTTTGGGAAGA+AGG + Chr7:10229103-10229122 None:intergenic 25.0%
!!! TATTTTGGAAATTGTATTGC+AGG - Chr7:10229902-10229921 MsG0780036596.01.T01:CDS 25.0%
!!! TTTTTTTAGTTTGGGAAGAA+GGG + Chr7:10229102-10229121 None:intergenic 25.0%
AAAACCAAAGAAAGTGGAAA+TGG - Chr7:10230150-10230169 MsG0780036596.01.T01:CDS 30.0%
AACCAACAATAGAAGCTTAA+TGG - Chr7:10229613-10229632 MsG0780036596.01.T01:CDS 30.0%
AACCATTAAGCTTCTATTGT+TGG + Chr7:10229618-10229637 None:intergenic 30.0%
AAGAAAATTCTTTGAACAGG+TGG + Chr7:10229041-10229060 None:intergenic 30.0%
AATCCTCTAAATGAATCTTC+TGG + Chr7:10229656-10229675 None:intergenic 30.0%
ACAATAGAAGCTTAATGGTT+TGG - Chr7:10229618-10229637 MsG0780036596.01.T01:CDS 30.0%
ACGCAAAATATTTGAGTGAT+TGG - Chr7:10229576-10229595 MsG0780036596.01.T01:CDS 30.0%
ATGGTTTCTATAGATAGAAC+TGG - Chr7:10230169-10230188 MsG0780036596.01.T01:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG - Chr7:10229619-10229638 MsG0780036596.01.T01:CDS 30.0%
CAATTTCCAAAATATGTTGC+AGG + Chr7:10229896-10229915 None:intergenic 30.0%
CCAATTGAAAATCCATAGTT+TGG + Chr7:10229377-10229396 None:intergenic 30.0%
GTTGAAACAAGTGAGTTATT+GGG - Chr7:10229938-10229957 MsG0780036596.01.T01:CDS 30.0%
TCTACAATCAGAAAGACAAA+AGG + Chr7:10230197-10230216 None:intergenic 30.0%
TGTCTTTCTGATTGTAGAAA+TGG - Chr7:10230199-10230218 MsG0780036596.01.T01:CDS 30.0%
TGTGTCTTACAAAAAAGCAA+TGG - Chr7:10230243-10230262 MsG0780036596.01.T01:CDS 30.0%
TGTTGAAACAAGTGAGTTAT+TGG - Chr7:10229937-10229956 MsG0780036596.01.T01:CDS 30.0%
TTACTTTCTTCGACATACTA+TGG - Chr7:10229006-10229025 MsG0780036596.01.T01:CDS 30.0%
TTGAAACAAGTGAGTTATTG+GGG - Chr7:10229939-10229958 MsG0780036596.01.T01:CDS 30.0%
! CCAAACTATGGATTTTCAAT+TGG - Chr7:10229374-10229393 MsG0780036596.01.T01:CDS 30.0%
! CGACTTCTTTTATCAAATCT+TGG - Chr7:10229435-10229454 MsG0780036596.01.T01:CDS 30.0%
!! GCTTTGGAAACTTTAAAAGA+TGG - Chr7:10230001-10230020 MsG0780036596.01.T01:CDS 30.0%
!! TGGCTTTGAATATTGATTGT+CGG - Chr7:10229849-10229868 MsG0780036596.01.T01:CDS 30.0%
!! TTAAAAGATGGAGTGTTGAA+TGG - Chr7:10230013-10230032 MsG0780036596.01.T01:CDS 30.0%
!!! GAGGTTTATAGTACTGATTT+TGG - Chr7:10230121-10230140 MsG0780036596.01.T01:CDS 30.0%
!!! TATAGTACTGATTTTGGTTG+TGG - Chr7:10230127-10230146 MsG0780036596.01.T01:CDS 30.0%
AAAACTCATGTGGCAAACAA+AGG + Chr7:10229511-10229530 None:intergenic 35.0%
AAACTCATGTGGCAAACAAA+GGG + Chr7:10229510-10229529 None:intergenic 35.0%
AGTATGTCGAAGAAAGTAAG+AGG + Chr7:10229005-10229024 None:intergenic 35.0%
CAACAAAAGTTGACAAGTGA+AGG + Chr7:10229763-10229782 None:intergenic 35.0%
GAAACCATTTCCACTTTCTT+TGG + Chr7:10230157-10230176 None:intergenic 35.0%
GTATTTGTGTAGCTTCAGAA+AGG + Chr7:10229283-10229302 None:intergenic 35.0%
GTTCCAGAAGATTCATTTAG+AGG - Chr7:10229650-10229669 MsG0780036596.01.T01:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG + Chr7:10229521-10229540 None:intergenic 35.0%
TCTGATTGTAGAAATGGTGA+TGG - Chr7:10230205-10230224 MsG0780036596.01.T01:CDS 35.0%
TGAAACAAGTGAGTTATTGG+GGG - Chr7:10229940-10229959 MsG0780036596.01.T01:CDS 35.0%
TGAGAACAAAAATGCTCTGA+TGG - Chr7:10229829-10229848 MsG0780036596.01.T01:CDS 35.0%
TTGTGGAAAACCAAAGAAAG+TGG - Chr7:10230144-10230163 MsG0780036596.01.T01:CDS 35.0%
! ACATGATCAAGCTTCTGTTT+TGG - Chr7:10229331-10229350 MsG0780036596.01.T01:CDS 35.0%
! GCTGATTTCAATCATCTTTC+AGG - Chr7:10229251-10229270 MsG0780036596.01.T01:CDS 35.0%
! TGAAGTGTTAAGTGAAGCTT+TGG - Chr7:10229985-10230004 MsG0780036596.01.T01:CDS 35.0%
! TTGAGTGATTGGTTAAAGCA+AGG - Chr7:10229587-10229606 MsG0780036596.01.T01:CDS 35.0%
! TTTTGTTCATCGTTACTTGG+CGG - Chr7:10230046-10230065 MsG0780036596.01.T01:CDS 35.0%
!! GTTACCGTTTTTCCAAACTA+TGG - Chr7:10229362-10229381 MsG0780036596.01.T01:CDS 35.0%
!! TGTCAAAACAAAAGGGTACT+AGG - Chr7:10229723-10229742 MsG0780036596.01.T01:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG - Chr7:10229404-10229423 MsG0780036596.01.T01:CDS 35.0%
AACTCATGTGGCAAACAAAG+GGG + Chr7:10229509-10229528 None:intergenic 40.0%
ATCAGCATCAGATTCAGCTA+TGG + Chr7:10229237-10229256 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG + Chr7:10229155-10229174 None:intergenic 40.0%
CCAAAATATGTTGCAGGAGT+CGG + Chr7:10229890-10229909 None:intergenic 40.0%
TGTATCCATAGCTTATGCCT+GGG - Chr7:10229781-10229800 MsG0780036596.01.T01:CDS 40.0%
TTGCTTCGCTCTTTGTCAAA+GGG - Chr7:10230272-10230291 MsG0780036596.01.T01:CDS 40.0%
TTGTATCCATAGCTTATGCC+TGG - Chr7:10229780-10229799 MsG0780036596.01.T01:CDS 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG - Chr7:10230271-10230290 MsG0780036596.01.T01:CDS 40.0%
! AGAGGAAGTGATGTTTCTGA+AGG + Chr7:10228987-10229006 None:intergenic 40.0%
! AGTGATTGGTTAAAGCAAGG+TGG - Chr7:10229590-10229609 MsG0780036596.01.T01:CDS 40.0%
!! AATGGTGATGGTGTTGAGAT+AGG - Chr7:10230217-10230236 MsG0780036596.01.T01:CDS 40.0%
!! ATTGGCTTGTGAGAATCATG+AGG + Chr7:10229179-10229198 None:intergenic 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG - Chr7:10229153-10229172 MsG0780036596.01.T01:CDS 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG - Chr7:10230102-10230121 MsG0780036596.01.T01:CDS 40.0%
AAATATGTTGCAGGAGTCGG+TGG + Chr7:10229887-10229906 None:intergenic 45.0%
AGCTTTCATTCTGCATACCC+AGG + Chr7:10229801-10229820 None:intergenic 45.0%
AGTGAGTTATTGGGGGAAGA+TGG - Chr7:10229947-10229966 MsG0780036596.01.T01:CDS 45.0%
! CCGACTCCTGCAACATATTT+TGG - Chr7:10229887-10229906 MsG0780036596.01.T01:CDS 45.0%
!! GTTAAAGCAATTGGTGCTGC+TGG - Chr7:10230085-10230104 MsG0780036596.01.T01:CDS 45.0%
GCATACCCAGGCATAAGCTA+TGG + Chr7:10229789-10229808 None:intergenic 50.0%
TGTTGAGGAAGAGTGAGGCT+TGG + Chr7:10229079-10229098 None:intergenic 50.0%
!! AAGGGTGTTGAGGAAGAGTG+AGG + Chr7:10229084-10229103 None:intergenic 50.0%
!! GGAAGATGGACTAATCGTGG+CGG - Chr7:10229961-10229980 MsG0780036596.01.T01:CDS 50.0%
!! GTTTGGGAAGAAGGGTGTTG+AGG + Chr7:10229094-10229113 None:intergenic 50.0%
!! AGGAAGAGTGAGGCTTGGTG+TGG + Chr7:10229074-10229093 None:intergenic 55.0%
!! GGAAGAGTGAGGCTTGGTGT+GGG + Chr7:10229073-10229092 None:intergenic 55.0%
!! GGGGGAAGATGGACTAATCG+TGG - Chr7:10229958-10229977 MsG0780036596.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 10228930 10230306 10228930 ID=MsG0780036596.01;Name=MsG0780036596.01
Chr7 mRNA 10228930 10230306 10228930 ID=MsG0780036596.01.T01;Parent=MsG0780036596.01;Name=MsG0780036596.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|458
Chr7 exon 10228930 10230306 10228930 ID=MsG0780036596.01.T01:exon:1607;Parent=MsG0780036596.01.T01
Chr7 CDS 10228930 10230306 10228930 ID=MsG0780036596.01.T01:cds;Parent=MsG0780036596.01.T01
Gene Sequence

>MsG0780036596.01.T01

ATGACCAAAATCATAGAAATTTTCAATGTAGCAGCATCTTCACAAGAAGAACTACCTTCAGAAACATCACTTCCTCTTACTTTCTTCGACATACTATGGTTAAGATTACCACCTGTTCAAAGAATTTTCTTCTATGAATTCCCACACCAAGCCTCACTCTTCCTCAACACCCTTCTTCCCAAACTAAAAAAATCACTTTCAATTGCACTTTTTCATTTTTATCCTCTTTTGGGTCATCTCATTTGGCCTCATGATTCTCACAAGCCAATCATTAAATTCATCAAAGGAAACACTCTTTCACTTACCATAGCTGAATCTGATGCTGATTTCAATCATCTTTCAGGTAAGAACCTTTCTGAAGCTACACAAATACATGATCTTTTACCTAACTTGAATATTTCACATGATCAAGCTTCTGTTTTGGCTCTTCAAGTTACCGTTTTTCCAAACTATGGATTTTCAATTGGTATTACTTCACATCATGCTGTTTTAGATGGTAAAACTTCGACTTCTTTTATCAAATCTTGGGCTTACATATGTAAAAATCTTGAAAATGAAGTATCTGAATTAGAATCACCCCTTTGTTTGCCACATGAGTTTTGTCCTTTCTATGATAGAAATGTAATCAAGGATCCAAATGAATTAGACGCAAAATATTTGAGTGATTGGTTAAAGCAAGGTGGAACCAACAATAGAAGCTTAATGGTTTGGGATCTTCAAGTTCCAGAAGATTCATTTAGAGGATTATTTCAATTATCTCGTTTGGATATTGAAAAGCTTAAGGAATTTGTAGTGTCAAAACAAAAGGGTACTAGGAATGAGAAAAAAAACCTTCACTTGTCAACTTTTGTTGTATCCATAGCTTATGCCTGGGTATGCAGAATGAAAGCTGAAGAAATTGAGAACAAAAATGCTCTGATGGCTTTGAATATTGATTGTCGGAATCGTTTAGAACCACCGACTCCTGCAACATATTTTGGAAATTGTATTGCAGGAAGACTTGCAATTGTTGAAACAAGTGAGTTATTGGGGGAAGATGGACTAATCGTGGCGGTTGAAGTGTTAAGTGAAGCTTTGGAAACTTTAAAAGATGGAGTGTTGAATGGAGCTGAAAATTTTTGTTCATCGTTACTTGGCGGTCTTGCAATTTCTGATGTTAAAGCAATTGGTGCTGCTGGTTCACCTAAATTTGAGGTTTATAGTACTGATTTTGGTTGTGGAAAACCAAAGAAAGTGGAAATGGTTTCTATAGATAGAACTGGTGCCTTTTGTCTTTCTGATTGTAGAAATGGTGATGGTGTTGAGATAGGTTTTGTGTCTTACAAAAAAGCAATGGAAGCTTTTGCTTCGCTCTTTGTCAAAGGGATTGCATCTTGA

Protein sequence

>MsG0780036596.01.T01

MTKIIEIFNVAASSQEELPSETSLPLTFFDILWLRLPPVQRIFFYEFPHQASLFLNTLLPKLKKSLSIALFHFYPLLGHLIWPHDSHKPIIKFIKGNTLSLTIAESDADFNHLSGKNLSEATQIHDLLPNLNISHDQASVLALQVTVFPNYGFSIGITSHHAVLDGKTSTSFIKSWAYICKNLENEVSELESPLCLPHEFCPFYDRNVIKDPNELDAKYLSDWLKQGGTNNRSLMVWDLQVPEDSFRGLFQLSRLDIEKLKEFVVSKQKGTRNEKKNLHLSTFVVSIAYAWVCRMKAEEIENKNALMALNIDCRNRLEPPTPATYFGNCIAGRLAIVETSELLGEDGLIVAVEVLSEALETLKDGVLNGAENFCSSLLGGLAISDVKAIGAAGSPKFEVYSTDFGCGKPKKVEMVSIDRTGAFCLSDCRNGDGVEIGFVSYKKAMEAFASLFVKGIAS*