AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036593.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036593.01.T01 MTR_7g014330 92.140 458 36 0 1 458 1 458 0.0 879
MsG0780036593.01.T01 MTR_7g014230 90.088 454 45 0 2 455 4 457 0.0 848
MsG0780036593.01.T01 MTR_7g014250 88.865 458 51 0 1 458 1 458 0.0 847
MsG0780036593.01.T01 MTR_7g014360 81.186 388 53 1 71 458 21 388 0.0 644
MsG0780036593.01.T01 MTR_7g014310 75.749 334 27 2 108 441 29 308 2.44e-174 491
MsG0780036593.01.T01 MTR_6g015815 47.660 470 218 12 2 458 8 462 1.58e-148 431
MsG0780036593.01.T01 MTR_6g015850 47.210 466 221 12 3 458 9 459 2.11e-143 418
MsG0780036593.01.T01 MTR_6g015830 46.895 467 224 11 3 458 9 462 1.37e-142 416
MsG0780036593.01.T01 MTR_6g015320 46.004 463 228 10 3 458 9 456 5.90e-140 409
MsG0780036593.01.T01 MTR_6g015315 45.336 461 235 9 3 458 6 454 5.93e-137 402
MsG0780036593.01.T01 MTR_7g014610 41.053 475 255 11 3 458 9 477 2.20e-112 340
MsG0780036593.01.T01 MTR_7g014200 40.598 468 259 11 3 458 10 470 2.15e-110 334
MsG0780036593.01.T01 MTR_7g014160 40.717 474 251 14 3 456 10 473 5.92e-108 328
MsG0780036593.01.T01 MTR_7g013850 38.074 457 250 13 27 456 30 480 5.64e-96 298
MsG0780036593.01.T01 MTR_7g014620 38.789 446 238 9 22 456 11 432 1.12e-91 285
MsG0780036593.01.T01 MTR_2g089765 38.655 476 252 14 3 452 17 478 1.17e-88 279
MsG0780036593.01.T01 MTR_3g028210 34.328 469 280 11 3 456 9 464 8.45e-82 260
MsG0780036593.01.T01 MTR_7g015860 35.504 476 256 13 3 452 6 456 9.39e-81 258
MsG0780036593.01.T01 MTR_8g012750 35.220 477 278 12 3 456 4 472 2.54e-80 257
MsG0780036593.01.T01 MTR_2g089670 37.444 446 251 13 22 452 41 473 7.78e-80 256
MsG0780036593.01.T01 MTR_6g015310 39.118 363 164 9 74 433 23 331 7.46e-77 243
MsG0780036593.01.T01 MTR_3g087640 34.375 480 272 13 3 456 10 472 2.73e-73 238
MsG0780036593.01.T01 MTR_2g089650 32.919 483 270 15 3 458 10 465 8.47e-71 232
MsG0780036593.01.T01 MTR_2g089735 33.630 449 245 13 39 458 39 463 2.37e-69 228
MsG0780036593.01.T01 MTR_2g089755 32.747 455 270 13 26 458 37 477 2.35e-68 226
MsG0780036593.01.T01 MTR_7g014630 42.599 277 140 6 3 267 10 279 6.18e-67 219
MsG0780036593.01.T01 MTR_7g014205 77.863 131 18 1 295 425 1 120 5.55e-63 200
MsG0780036593.01.T01 MTR_7g014210 85.217 115 16 1 314 427 24 138 7.68e-60 193
MsG0780036593.01.T01 MTR_2g089665 30.909 440 189 8 1 431 1 334 2.06e-51 177
MsG0780036593.01.T01 MTR_3g435300 37.226 274 144 8 3 262 4 263 1.28e-42 152
MsG0780036593.01.T01 MTR_7g014180 46.154 169 85 2 3 168 8 173 1.43e-42 149
MsG0780036593.01.T01 MTR_7g014340 90.141 71 7 0 1 71 1 71 4.93e-38 134
MsG0780036593.01.T01 MTR_7g014670 37.368 190 113 4 272 456 71 259 6.77e-34 128
MsG0780036593.01.T01 MTR_7g014220 85.246 61 9 0 14 74 6 66 1.90e-29 110
MsG0780036593.01.T01 MTR_3g026310 26.914 431 255 18 10 413 6 403 4.08e-23 101
MsG0780036593.01.T01 MTR_0190s0020 28.700 446 231 20 23 437 26 415 5.05e-23 101
MsG0780036593.01.T01 MTR_8g075610 25.641 390 223 17 42 409 30 374 5.29e-22 98.2
MsG0780036593.01.T01 MTR_7g085930 26.582 474 296 16 13 456 10 461 6.46e-22 98.6
MsG0780036593.01.T01 MTR_3g026950 25.734 443 252 18 32 433 21 427 9.68e-22 97.8
MsG0780036593.01.T01 MTR_4g094838 24.939 409 235 14 26 413 28 385 3.98e-21 95.9
MsG0780036593.01.T01 MTR_4g022825 26.329 414 249 16 20 413 18 395 1.27e-20 94.4
MsG0780036593.01.T01 MTR_4g094842 26.351 444 269 19 3 427 5 409 1.93e-20 94.0
MsG0780036593.01.T01 MTR_3g088420 25.000 432 251 17 8 413 4 388 3.40e-20 92.8
MsG0780036593.01.T01 MTR_3g049150 25.679 405 237 15 34 409 30 399 4.02e-20 92.8
MsG0780036593.01.T01 MTR_2g064495 23.349 424 279 15 42 452 39 429 4.11e-20 92.8
MsG0780036593.01.T01 MTR_2g105330 23.349 424 279 15 42 452 39 429 3.90e-19 89.7
MsG0780036593.01.T01 MTR_4g094835 23.529 408 252 16 26 413 32 399 7.31e-19 89.0
MsG0780036593.01.T01 MTR_3g101930 27.231 437 257 18 1 412 7 407 2.30e-18 87.8
MsG0780036593.01.T01 MTR_7g085990 26.400 375 223 10 13 364 6 350 2.65e-18 87.4
MsG0780036593.01.T01 MTR_7g086000 23.990 421 271 11 62 456 60 457 5.36e-18 86.7
MsG0780036593.01.T01 MTR_3g098980 24.816 407 252 15 62 453 66 433 5.64e-18 86.3
MsG0780036593.01.T01 MTR_4g127650 24.622 463 284 18 24 456 29 456 8.76e-18 85.9
MsG0780036593.01.T01 MTR_4g022800 28.741 421 232 19 20 413 18 397 4.31e-17 83.6
MsG0780036593.01.T01 MTR_8g079710 24.476 429 250 18 26 424 29 413 6.66e-17 83.2
MsG0780036593.01.T01 MTR_8g096530 24.789 355 231 12 62 410 59 383 1.45e-16 82.0
MsG0780036593.01.T01 MTR_4g022760 28.021 389 202 20 10 367 6 347 1.79e-15 78.6
MsG0780036593.01.T01 MTR_7g084940 25.170 441 255 17 39 452 48 440 3.58e-14 74.7
MsG0780036593.01.T01 MTR_4g097090 23.284 408 261 13 24 408 28 406 7.09e-14 73.9
MsG0780036593.01.T01 MTR_7g027175 23.295 352 238 11 62 409 68 391 1.92e-13 72.4
MsG0780036593.01.T01 MTR_4g022290 25.118 422 240 17 20 413 24 397 7.96e-13 70.5
MsG0780036593.01.T01 MTR_7g084910 26.557 305 174 14 39 328 49 318 6.30e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036593.01.T01 AT3G29635 42.117 444 230 13 24 456 27 454 2.73e-101 310
MsG0780036593.01.T01 AT3G29670 40.343 466 248 12 4 458 5 451 5.25e-101 310
MsG0780036593.01.T01 AT5G39090 39.520 458 253 12 5 456 8 447 1.07e-97 301
MsG0780036593.01.T01 AT5G39080 38.280 465 257 12 4 452 7 457 3.85e-96 297
MsG0780036593.01.T01 AT5G39050 39.149 470 257 12 3 456 11 467 1.36e-95 296
MsG0780036593.01.T01 AT5G61160 37.660 470 258 11 3 458 4 452 2.45e-94 292
MsG0780036593.01.T01 AT3G29590 38.116 467 247 13 4 456 10 448 1.25e-88 278
MsG0780036593.01.T01 AT3G29680 39.636 439 237 12 24 452 23 443 9.45e-88 275
MsG0780036593.01.T01 AT1G03940 35.294 476 266 14 3 456 9 464 2.82e-81 259
MsG0780036593.01.T01 AT1G03495 34.444 360 200 11 1 340 1 344 5.96e-58 194
MsG0780036593.01.T01 AT3G29720 38.947 190 100 4 99 286 26 201 3.39e-31 120
MsG0780036593.01.T01 AT5G23940 25.272 459 283 19 3 436 4 427 1.26e-22 100
MsG0780036593.01.T01 AT2G19070 22.676 441 292 12 39 456 37 451 3.11e-22 99.4
MsG0780036593.01.T01 AT5G48930 23.628 419 277 15 42 448 39 426 4.58e-19 89.7
MsG0780036593.01.T01 AT3G29690 34.228 149 86 4 312 456 38 178 4.09e-18 82.4
MsG0780036593.01.T01 AT5G67160 24.337 415 254 10 10 409 13 382 4.43e-18 86.7
MsG0780036593.01.T01 AT5G67150 24.941 421 265 12 10 413 13 399 5.83e-18 86.3
MsG0780036593.01.T01 AT3G47170 26.855 283 169 10 62 328 70 330 7.08e-18 86.3
MsG0780036593.01.T01 AT5G07850 25.000 384 232 12 50 413 58 405 2.06e-15 78.6
MsG0780036593.01.T01 AT1G31490 23.426 397 255 12 23 409 26 383 1.61e-14 75.9
MsG0780036593.01.T01 AT3G48720 24.225 355 231 13 62 409 61 384 2.54e-14 75.1
MsG0780036593.01.T01 AT1G28680 22.131 366 232 9 62 412 62 389 4.78e-14 74.3
MsG0780036593.01.T01 AT1G28680 22.903 310 202 7 62 364 62 341 7.37e-14 73.6
MsG0780036593.01.T01 AT5G07860 24.451 364 235 11 54 408 64 396 2.83e-13 72.0
MsG0780036593.01.T01 AT5G57840 22.174 460 297 14 17 454 16 436 8.52e-12 67.4

Find 73 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACTCCTGCAACATATTT+TGG 0.089197 7:-10208985 MsG0780036593.01.T01:CDS
GCTGATTTCAATCATCTTTC+AGG 0.150127 7:-10209621 MsG0780036593.01.T01:CDS
CCTTTGATGAATTTAATTAT+TGG 0.205453 7:+10209678 None:intergenic
TGTTGAAACAAGTGAGTTAT+TGG 0.246021 7:-10208935 MsG0780036593.01.T01:CDS
GTTCCAGAAGATTCATTTAG+AGG 0.266808 7:-10209222 MsG0780036593.01.T01:CDS
GAAACCATTTCAACTTTCTT+TGG 0.269632 7:+10208718 None:intergenic
TTACTTTCTTTGACATACTA+TGG 0.279036 7:-10209866 MsG0780036593.01.T01:CDS
GTACTATAAACCTCAAATTT+AGG 0.281913 7:+10208760 None:intergenic
ACATGATCAAGCTTCTGTTT+TGG 0.289012 7:-10209541 MsG0780036593.01.T01:CDS
CCAATTGAAAATCCATAGTT+TGG 0.297340 7:+10209498 None:intergenic
AACCAACAATAGAAGCTTAA+TGG 0.299594 7:-10209259 MsG0780036593.01.T01:CDS
ATTATTTCAATTATCTCGTT+TGG 0.307673 7:-10209199 MsG0780036593.01.T01:CDS
GTTGAAACAAGTGAGTTATT+GGG 0.310202 7:-10208934 MsG0780036593.01.T01:CDS
ACGCAAAATATTTGAGTGAT+TGG 0.311894 7:-10209296 MsG0780036593.01.T01:CDS
ACAATAGAAGCTTAATGGTT+TGG 0.327026 7:-10209254 MsG0780036593.01.T01:CDS
AATCCTCTAAATGAATCTTC+TGG 0.330893 7:+10209219 None:intergenic
AACCATTAAGCTTCTATTGT+TGG 0.335300 7:+10209257 None:intergenic
TTTGGATATTGAAAAGCTTA+AGG 0.336799 7:-10209181 MsG0780036593.01.T01:CDS
CAATAGAAGCTTAATGGTTT+GGG 0.346870 7:-10209253 MsG0780036593.01.T01:CDS
TGTCTTTCTGATTGTAGAAA+TGG 0.347109 7:-10208673 MsG0780036593.01.T01:CDS
GAGGTTTATAGTACTGATTT+TGG 0.352559 7:-10208751 MsG0780036593.01.T01:CDS
TTGTATCCATAGCTTATGCC+TGG 0.358494 7:-10209092 MsG0780036593.01.T01:CDS
TAGAAGAAAATTCTTTGAAC+AGG 0.373178 7:+10209831 None:intergenic
TGCTGGTTCACCTAAATTTG+AGG 0.384622 7:-10208770 MsG0780036593.01.T01:CDS
TGAAGTGTTAAGTGAAGCTT+TGG 0.391195 7:-10208887 MsG0780036593.01.T01:CDS
ATTTCTGATGTTAAAGCAAT+TGG 0.393974 7:-10208796 MsG0780036593.01.T01:CDS
TCATGTGAAATATTCAAGTT+AGG 0.394263 7:+10209558 None:intergenic
CAATTTCCAAAATATGTTGC+AGG 0.404618 7:+10208979 None:intergenic
ATTTGTAGTGTCAAAACAAA+AGG 0.406667 7:-10209157 MsG0780036593.01.T01:CDS
TTAAAAGATGGAGTGTTGAA+TGG 0.421534 7:-10208859 MsG0780036593.01.T01:CDS
AAAACCAAAGAAAGTTGAAA+TGG 0.434697 7:-10208722 MsG0780036593.01.T01:CDS
TTGCTTCGCTCTTTGTCAAA+GGG 0.440215 7:-10208600 MsG0780036593.01.T01:CDS
AATGGTGATGGTGTTGAGAT+AGG 0.443549 7:-10208655 MsG0780036593.01.T01:CDS
AGTATGTCAAAGAAAGTAAG+AGG 0.444791 7:+10209870 None:intergenic
GCTTTGGAAACTTTAAAAGA+TGG 0.454178 7:-10208871 MsG0780036593.01.T01:CDS
ATTACATTTCTATCATAGAA+AGG 0.455442 7:+10209339 None:intergenic
TTTGCTTCGCTCTTTGTCAA+AGG 0.460307 7:-10208601 MsG0780036593.01.T01:CDS
AAACTCATGTGGCAAACAAA+GGG 0.475884 7:+10209365 None:intergenic
TTGAAACAAGTGAGTTATTG+GGG 0.479171 7:-10208933 MsG0780036593.01.T01:CDS
CCAAAATATGTTGCAGGAGT+CGG 0.485029 7:+10208985 None:intergenic
ATGGTTTCTATAGATAGAAC+TGG 0.490163 7:-10208703 MsG0780036593.01.T01:CDS
GTTAAAGCAATTGGTGCTGC+TGG 0.491334 7:-10208787 MsG0780036593.01.T01:CDS
TGTCAAAACAAAAGGGTACT+AGG 0.501108 7:-10209149 MsG0780036593.01.T01:CDS
AAGAAAATTCTTTGAACAGG+TGG 0.502827 7:+10209834 None:intergenic
GGTATTTCTACTTGTGAAGA+TGG 0.504447 7:+10209909 None:intergenic
AGCTTTCATTCTGCATACCC+AGG 0.512729 7:+10209074 None:intergenic
TGGCTTTGAATATTGATTGT+CGG 0.525216 7:-10209023 MsG0780036593.01.T01:CDS
TTGAGTGATTGGTTAAAGCA+AGG 0.525666 7:-10209285 MsG0780036593.01.T01:CDS
CTATGATAGAAATGTAATCA+AGG 0.525898 7:-10209334 MsG0780036593.01.T01:CDS
CAACAAAAGTTGACAAGTGA+AGG 0.526815 7:+10209112 None:intergenic
GTTTGGGAAGAAGGGTGTTG+AGG 0.530313 7:+10209781 None:intergenic
AAGGGTGTTGAGGAAGAGTG+AGG 0.531831 7:+10209791 None:intergenic
TCTACAATCAGAAAGACAAA+AGG 0.534606 7:+10208678 None:intergenic
TGTTGAGGAAGAGTGAGGTT+TGG 0.537732 7:+10209796 None:intergenic
GCATACCCAGGCATAAGCTA+TGG 0.548203 7:+10209086 None:intergenic
TGTATCCATAGCTTATGCCT+GGG 0.550290 7:-10209091 MsG0780036593.01.T01:CDS
TTTGTAGTGTCAAAACAAAA+GGG 0.558518 7:-10209156 MsG0780036593.01.T01:CDS
CCAATAATTAAATTCATCAA+AGG 0.567128 7:-10209678 MsG0780036593.01.T01:CDS
GTATTTGTGTAGCTTCAGAA+AGG 0.568193 7:+10209592 None:intergenic
AGAGGAAGTGATGTTTCTGA+AGG 0.570125 7:+10209888 None:intergenic
AAAACTCATGTGGCAAACAA+AGG 0.574819 7:+10209364 None:intergenic
CAAATGAGATGACCCAAAAG+AGG 0.588902 7:+10209720 None:intergenic
AGGAAGAGTGAGGTTTGGTG+TGG 0.591767 7:+10209801 None:intergenic
ATCAGCATCAGATTCAGCTA+TGG 0.602424 7:+10209638 None:intergenic
TCTGATTGTAGAAATGGTGA+TGG 0.615354 7:-10208667 MsG0780036593.01.T01:CDS
AAATATGTTGCAGGAGTCGG+TGG 0.620986 7:+10208988 None:intergenic
AGTGATTGGTTAAAGCAAGG+TGG 0.623091 7:-10209282 MsG0780036593.01.T01:CDS
GGAAGAGTGAGGTTTGGTGT+GGG 0.644491 7:+10209802 None:intergenic
TAGAAAGGACAAAACTCATG+TGG 0.652604 7:+10209354 None:intergenic
ATTGGCTTGTGAGAATCATG+AGG 0.665606 7:+10209696 None:intergenic
AACTCATGTGGCAAACAAAG+GGG 0.672677 7:+10209366 None:intergenic
TGAAACAAGTGAGTTATTGG+GGG 0.676029 7:-10208932 MsG0780036593.01.T01:CDS
GGAAGATGGACTAATCGCGG+CGG 0.785840 7:-10208911 MsG0780036593.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTTCTATCATAGAA+AGG + Chr7:10209194-10209213 None:intergenic 20.0%
!! ATTATTTCAATTATCTCGTT+TGG - Chr7:10209331-10209350 MsG0780036593.01.T01:CDS 20.0%
!! CCAATAATTAAATTCATCAA+AGG - Chr7:10208852-10208871 MsG0780036593.01.T01:CDS 20.0%
!! CCTTTGATGAATTTAATTAT+TGG + Chr7:10208855-10208874 None:intergenic 20.0%
!!! GAAAGTGATTTTTTTAGTTT+GGG + Chr7:10208768-10208787 None:intergenic 20.0%
! AAAACCAAAGAAAGTTGAAA+TGG - Chr7:10209808-10209827 MsG0780036593.01.T01:CDS 25.0%
! AAATCCATAGTTTGGAAAAA+CGG + Chr7:10209027-10209046 None:intergenic 25.0%
! ATTTCTGATGTTAAAGCAAT+TGG - Chr7:10209734-10209753 MsG0780036593.01.T01:CDS 25.0%
! ATTTGTAGTGTCAAAACAAA+AGG - Chr7:10209373-10209392 MsG0780036593.01.T01:CDS 25.0%
! CTATGATAGAAATGTAATCA+AGG - Chr7:10209196-10209215 MsG0780036593.01.T01:CDS 25.0%
! GTACTATAAACCTCAAATTT+AGG + Chr7:10209773-10209792 None:intergenic 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG + Chr7:10208702-10208721 None:intergenic 25.0%
! TTACTTTCTTTGACATACTA+TGG - Chr7:10208664-10208683 MsG0780036593.01.T01:CDS 25.0%
! TTTGGATATTGAAAAGCTTA+AGG - Chr7:10209349-10209368 MsG0780036593.01.T01:CDS 25.0%
! TTTGTAGTGTCAAAACAAAA+GGG - Chr7:10209374-10209393 MsG0780036593.01.T01:CDS 25.0%
!! AATTTTTGTTCATCGTTACT+TGG - Chr7:10209701-10209720 MsG0780036593.01.T01:CDS 25.0%
!! ATAAAAATGAGAAAGTGCAA+TGG + Chr7:10208790-10208809 None:intergenic 25.0%
!! GACTTCTTTTATCAAATCTT+GGG - Chr7:10209094-10209113 MsG0780036593.01.T01:CDS 25.0%
!! TATTTTGCGTCTAATTCATT+TGG + Chr7:10209224-10209243 None:intergenic 25.0%
!! TCATGTGAAATATTCAAGTT+AGG + Chr7:10208975-10208994 None:intergenic 25.0%
!!! ATTTTTTTAGTTTGGGAAGA+AGG + Chr7:10208761-10208780 None:intergenic 25.0%
!!! GGAAAGTGATTTTTTTAGTT+TGG + Chr7:10208769-10208788 None:intergenic 25.0%
!!! TATTTTGGAAATTGTATTGC+AGG - Chr7:10209560-10209579 MsG0780036593.01.T01:CDS 25.0%
!!! TCTCATTTTTATCCTCTTTT+GGG - Chr7:10208798-10208817 MsG0780036593.01.T01:CDS 25.0%
!!! TTCTCATTTTTATCCTCTTT+TGG - Chr7:10208797-10208816 MsG0780036593.01.T01:CDS 25.0%
!!! TTTTTTTAGTTTGGGAAGAA+GGG + Chr7:10208760-10208779 None:intergenic 25.0%
AACCAACAATAGAAGCTTAA+TGG - Chr7:10209271-10209290 MsG0780036593.01.T01:CDS 30.0%
AACCATTAAGCTTCTATTGT+TGG + Chr7:10209276-10209295 None:intergenic 30.0%
AAGAAAATTCTTTGAACAGG+TGG + Chr7:10208699-10208718 None:intergenic 30.0%
AATCCTCTAAATGAATCTTC+TGG + Chr7:10209314-10209333 None:intergenic 30.0%
ACAATAGAAGCTTAATGGTT+TGG - Chr7:10209276-10209295 MsG0780036593.01.T01:CDS 30.0%
ACGCAAAATATTTGAGTGAT+TGG - Chr7:10209234-10209253 MsG0780036593.01.T01:CDS 30.0%
AGTATGTCAAAGAAAGTAAG+AGG + Chr7:10208663-10208682 None:intergenic 30.0%
ATGGTTTCTATAGATAGAAC+TGG - Chr7:10209827-10209846 MsG0780036593.01.T01:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG - Chr7:10209277-10209296 MsG0780036593.01.T01:CDS 30.0%
CAATTTCCAAAATATGTTGC+AGG + Chr7:10209554-10209573 None:intergenic 30.0%
CCAATTGAAAATCCATAGTT+TGG + Chr7:10209035-10209054 None:intergenic 30.0%
GAAACCATTTCAACTTTCTT+TGG + Chr7:10209815-10209834 None:intergenic 30.0%
GTTGAAACAAGTGAGTTATT+GGG - Chr7:10209596-10209615 MsG0780036593.01.T01:CDS 30.0%
TCTACAATCAGAAAGACAAA+AGG + Chr7:10209855-10209874 None:intergenic 30.0%
TGTCTTTCTGATTGTAGAAA+TGG - Chr7:10209857-10209876 MsG0780036593.01.T01:CDS 30.0%
TGTGTCTAACAAAAAAGCAA+TGG - Chr7:10209901-10209920 MsG0780036593.01.T01:CDS 30.0%
TGTTGAAACAAGTGAGTTAT+TGG - Chr7:10209595-10209614 MsG0780036593.01.T01:CDS 30.0%
TTGAAACAAGTGAGTTATTG+GGG - Chr7:10209597-10209616 MsG0780036593.01.T01:CDS 30.0%
! CCAAACTATGGATTTTCAAT+TGG - Chr7:10209032-10209051 MsG0780036593.01.T01:CDS 30.0%
! CGACTTCTTTTATCAAATCT+TGG - Chr7:10209093-10209112 MsG0780036593.01.T01:CDS 30.0%
!! GCTTTGGAAACTTTAAAAGA+TGG - Chr7:10209659-10209678 MsG0780036593.01.T01:CDS 30.0%
!! TGGCTTTGAATATTGATTGT+CGG - Chr7:10209507-10209526 MsG0780036593.01.T01:CDS 30.0%
!! TTAAAAGATGGAGTGTTGAA+TGG - Chr7:10209671-10209690 MsG0780036593.01.T01:CDS 30.0%
!!! GAGGTTTATAGTACTGATTT+TGG - Chr7:10209779-10209798 MsG0780036593.01.T01:CDS 30.0%
!!! TATAGTACTGATTTTGGTTG+TGG - Chr7:10209785-10209804 MsG0780036593.01.T01:CDS 30.0%
AAAACTCATGTGGCAAACAA+AGG + Chr7:10209169-10209188 None:intergenic 35.0%
AAACTCATGTGGCAAACAAA+GGG + Chr7:10209168-10209187 None:intergenic 35.0%
CAACAAAAGTTGACAAGTGA+AGG + Chr7:10209421-10209440 None:intergenic 35.0%
GTATTTGTGTAGCTTCAGAA+AGG + Chr7:10208941-10208960 None:intergenic 35.0%
GTTCCAGAAGATTCATTTAG+AGG - Chr7:10209308-10209327 MsG0780036593.01.T01:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG + Chr7:10209179-10209198 None:intergenic 35.0%
TCTGATTGTAGAAATGGTGA+TGG - Chr7:10209863-10209882 MsG0780036593.01.T01:CDS 35.0%
TGAAACAAGTGAGTTATTGG+GGG - Chr7:10209598-10209617 MsG0780036593.01.T01:CDS 35.0%
TGAGAACAAAAATGCTCTGA+TGG - Chr7:10209487-10209506 MsG0780036593.01.T01:CDS 35.0%
! ACATGATCAAGCTTCTGTTT+TGG - Chr7:10208989-10209008 MsG0780036593.01.T01:CDS 35.0%
! GCTGATTTCAATCATCTTTC+AGG - Chr7:10208909-10208928 MsG0780036593.01.T01:CDS 35.0%
! GGTATTTCTACTTGTGAAGA+TGG + Chr7:10208624-10208643 None:intergenic 35.0%
! TGAAGTGTTAAGTGAAGCTT+TGG - Chr7:10209643-10209662 MsG0780036593.01.T01:CDS 35.0%
! TTGAGTGATTGGTTAAAGCA+AGG - Chr7:10209245-10209264 MsG0780036593.01.T01:CDS 35.0%
! TTTTGTTCATCGTTACTTGG+CGG - Chr7:10209704-10209723 MsG0780036593.01.T01:CDS 35.0%
!! GTTACCGTTTTTCCAAACTA+TGG - Chr7:10209020-10209039 MsG0780036593.01.T01:CDS 35.0%
!! TGTCAAAACAAAAGGGTACT+AGG - Chr7:10209381-10209400 MsG0780036593.01.T01:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG - Chr7:10209062-10209081 MsG0780036593.01.T01:CDS 35.0%
AACTCATGTGGCAAACAAAG+GGG + Chr7:10209167-10209186 None:intergenic 40.0%
ATCAGCATCAGATTCAGCTA+TGG + Chr7:10208895-10208914 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG + Chr7:10208813-10208832 None:intergenic 40.0%
CCAAAATATGTTGCAGGAGT+CGG + Chr7:10209548-10209567 None:intergenic 40.0%
TGTATCCATAGCTTATGCCT+GGG - Chr7:10209439-10209458 MsG0780036593.01.T01:CDS 40.0%
TTGCTTCGCTCTTTGTCAAA+GGG - Chr7:10209930-10209949 MsG0780036593.01.T01:CDS 40.0%
TTGTATCCATAGCTTATGCC+TGG - Chr7:10209438-10209457 MsG0780036593.01.T01:CDS 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG - Chr7:10209929-10209948 MsG0780036593.01.T01:CDS 40.0%
! AGAGGAAGTGATGTTTCTGA+AGG + Chr7:10208645-10208664 None:intergenic 40.0%
! AGTGATTGGTTAAAGCAAGG+TGG - Chr7:10209248-10209267 MsG0780036593.01.T01:CDS 40.0%
!! AATGGTGATGGTGTTGAGAT+AGG - Chr7:10209875-10209894 MsG0780036593.01.T01:CDS 40.0%
!! ATTGGCTTGTGAGAATCATG+AGG + Chr7:10208837-10208856 None:intergenic 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG - Chr7:10208811-10208830 MsG0780036593.01.T01:CDS 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG - Chr7:10209760-10209779 MsG0780036593.01.T01:CDS 40.0%
AAATATGTTGCAGGAGTCGG+TGG + Chr7:10209545-10209564 None:intergenic 45.0%
AGCTTTCATTCTGCATACCC+AGG + Chr7:10209459-10209478 None:intergenic 45.0%
AGTGAGTTATTGGGGGAAGA+TGG - Chr7:10209605-10209624 MsG0780036593.01.T01:CDS 45.0%
TGTTGAGGAAGAGTGAGGTT+TGG + Chr7:10208737-10208756 None:intergenic 45.0%
! CCGACTCCTGCAACATATTT+TGG - Chr7:10209545-10209564 MsG0780036593.01.T01:CDS 45.0%
!! GTTAAAGCAATTGGTGCTGC+TGG - Chr7:10209743-10209762 MsG0780036593.01.T01:CDS 45.0%
GCATACCCAGGCATAAGCTA+TGG + Chr7:10209447-10209466 None:intergenic 50.0%
!! AAGGGTGTTGAGGAAGAGTG+AGG + Chr7:10208742-10208761 None:intergenic 50.0%
!! AGGAAGAGTGAGGTTTGGTG+TGG + Chr7:10208732-10208751 None:intergenic 50.0%
!! GGAAGAGTGAGGTTTGGTGT+GGG + Chr7:10208731-10208750 None:intergenic 50.0%
!! GTTTGGGAAGAAGGGTGTTG+AGG + Chr7:10208752-10208771 None:intergenic 50.0%
!! GGAAGATGGACTAATCGCGG+CGG - Chr7:10209619-10209638 MsG0780036593.01.T01:CDS 55.0%
!! GGGGGAAGATGGACTAATCG+CGG - Chr7:10209616-10209635 MsG0780036593.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 10208588 10209964 10208588 ID=MsG0780036593.01;Name=MsG0780036593.01
Chr7 mRNA 10208588 10209964 10208588 ID=MsG0780036593.01.T01;Parent=MsG0780036593.01;Name=MsG0780036593.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|458
Chr7 exon 10208588 10209964 10208588 ID=MsG0780036593.01.T01:exon:1604;Parent=MsG0780036593.01.T01
Chr7 CDS 10208588 10209964 10208588 ID=MsG0780036593.01.T01:cds;Parent=MsG0780036593.01.T01
Gene Sequence

>MsG0780036593.01.T01

ATGACGAAAATCATAGAAATTTTCAATGTAGCACCATCTTCACAAGTAGAAATACCTTCAGAAACATCACTTCCTCTTACTTTCTTTGACATACTATGGTTAAGATTACCACCTGTTCAAAGAATTTTCTTCTATGAATTCCCACACCAAACCTCACTCTTCCTCAACACCCTTCTTCCCAAACTAAAAAAATCACTTTCCATTGCACTTTCTCATTTTTATCCTCTTTTGGGTCATCTCATTTGGCCTCATGATTCTCACAAGCCAATAATTAAATTCATCAAAGGAAACACTCTTTCACTTACCATAGCTGAATCTGATGCTGATTTCAATCATCTTTCAGGTAAGAACCTTTCTGAAGCTACACAAATACATGATCTTTTACCTAACTTGAATATTTCACATGATCAAGCTTCTGTTTTGGCTCTTCAAGTTACCGTTTTTCCAAACTATGGATTTTCAATTGGTATTACTTCACATCATGCTGTTTTAGATGGTAAAACTTCGACTTCTTTTATCAAATCTTGGGCTTACATATGTAAAAATCTTGAAAATGAAGTATCTGAATTAGAATCACCCCTTTGTTTGCCACATGAGTTTTGTCCTTTCTATGATAGAAATGTAATCAAGGATCCAAATGAATTAGACGCAAAATATTTGAGTGATTGGTTAAAGCAAGGTGGAACCAACAATAGAAGCTTAATGGTTTGGGATCTTCAAGTTCCAGAAGATTCATTTAGAGGATTATTTCAATTATCTCGTTTGGATATTGAAAAGCTTAAGGAATTTGTAGTGTCAAAACAAAAGGGTACTAGGAATGAGAAAAAAAACCTTCACTTGTCAACTTTTGTTGTATCCATAGCTTATGCCTGGGTATGCAGAATGAAAGCTGAAGAAATTGAGAACAAAAATGCTCTGATGGCTTTGAATATTGATTGTCGGAATCGTTTAGAACCACCGACTCCTGCAACATATTTTGGAAATTGTATTGCAGGAAGACTTGCAATTGTTGAAACAAGTGAGTTATTGGGGGAAGATGGACTAATCGCGGCGGTTGAAGTGTTAAGTGAAGCTTTGGAAACTTTAAAAGATGGAGTGTTGAATGGAGCTGAAAATTTTTGTTCATCGTTACTTGGCGGTCTTGCAATTTCTGATGTTAAAGCAATTGGTGCTGCTGGTTCACCTAAATTTGAGGTTTATAGTACTGATTTTGGTTGTGGAAAACCAAAGAAAGTTGAAATGGTTTCTATAGATAGAACTGGTGCCTTTTGTCTTTCTGATTGTAGAAATGGTGATGGTGTTGAGATAGGTTTTGTGTCTAACAAAAAAGCAATGGAAGCTTTTGCTTCGCTCTTTGTCAAAGGGATTGCATCTTGA

Protein sequence

>MsG0780036593.01.T01

MTKIIEIFNVAPSSQVEIPSETSLPLTFFDILWLRLPPVQRIFFYEFPHQTSLFLNTLLPKLKKSLSIALSHFYPLLGHLIWPHDSHKPIIKFIKGNTLSLTIAESDADFNHLSGKNLSEATQIHDLLPNLNISHDQASVLALQVTVFPNYGFSIGITSHHAVLDGKTSTSFIKSWAYICKNLENEVSELESPLCLPHEFCPFYDRNVIKDPNELDAKYLSDWLKQGGTNNRSLMVWDLQVPEDSFRGLFQLSRLDIEKLKEFVVSKQKGTRNEKKNLHLSTFVVSIAYAWVCRMKAEEIENKNALMALNIDCRNRLEPPTPATYFGNCIAGRLAIVETSELLGEDGLIAAVEVLSEALETLKDGVLNGAENFCSSLLGGLAISDVKAIGAAGSPKFEVYSTDFGCGKPKKVEMVSIDRTGAFCLSDCRNGDGVEIGFVSNKKAMEAFASLFVKGIAS*