Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017109.01.T01 | XP_003602984.1 | 64.171 | 374 | 108 | 1 | 1 | 348 | 16 | 389 | 7.07E-164 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017109.01.T01 | Q9S7T8 | 44.474 | 380 | 173 | 6 | 1 | 346 | 15 | 390 | 1.47E-105 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017109.01.T01 | G7J5R9 | 64.171 | 374 | 108 | 1 | 1 | 348 | 16 | 389 | 3.38e-164 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001119.01 | MsG0380017109.01 | 0.805165 | 1.523040e-49 | 8.001344e-47 |
| MsG0180004112.01 | MsG0380017109.01 | 0.806186 | 9.297153e-50 | 5.014054e-47 |
| MsG0380014727.01 | MsG0380017109.01 | 0.801788 | 7.630730e-49 | 3.676590e-46 |
| MsG0380017109.01 | MsG0480019313.01 | 0.809824 | 1.563371e-50 | 9.273483e-48 |
| MsG0380017109.01 | MsG0480020322.01 | 0.814735 | 1.324423e-51 | 8.958239e-49 |
| MsG0380017109.01 | MsG0480020323.01 | 0.818880 | 1.555741e-52 | 1.178889e-49 |
| MsG0380017109.01 | MsG0480022535.01 | 0.811273 | 7.603258e-51 | 4.685828e-48 |
| MsG0380017109.01 | MsG0580024340.01 | 0.806687 | 7.288151e-50 | 3.980940e-47 |
| MsG0380017109.01 | MsG0580025827.01 | 0.800377 | 1.482997e-48 | 6.894778e-46 |
| MsG0380017109.01 | MsG0580026304.01 | 0.801147 | 1.033002e-48 | 4.897211e-46 |
| MsG0380017109.01 | MsG0680031996.01 | 0.802290 | 6.018977e-49 | 2.937370e-46 |
| MsG0380017109.01 | MsG0680035707.01 | 0.812375 | 4.375914e-51 | 2.777567e-48 |
| MsG0380017109.01 | MsG0780036116.01 | 0.822450 | 2.353227e-53 | 1.970430e-50 |
| MsG0380017109.01 | MsG0880041852.01 | 0.829532 | 4.884402e-55 | 5.012561e-52 |
| MsG0380017109.01 | MsG0880045992.01 | 0.813777 | 2.155719e-51 | 1.420740e-48 |
| MsG0380017109.01 | MsG0880046200.01 | 0.807409 | 5.125679e-50 | 2.852883e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017109.01.T01 | MTR_3g101130 | 64.171 | 374 | 108 | 1 | 1 | 348 | 16 | 389 | 8.57e-168 | 473 |
| MsG0380017109.01.T01 | MTR_7g047780 | 59.367 | 379 | 123 | 3 | 1 | 348 | 24 | 402 | 1.74e-152 | 435 |
| MsG0380017109.01.T01 | MTR_7g451890 | 59.103 | 379 | 124 | 3 | 1 | 348 | 24 | 402 | 2.34e-152 | 434 |
| MsG0380017109.01.T01 | MTR_7g050750 | 59.367 | 379 | 123 | 3 | 1 | 348 | 18 | 396 | 1.30e-150 | 430 |
| MsG0380017109.01.T01 | MTR_3g101180 | 57.702 | 383 | 125 | 4 | 1 | 346 | 16 | 398 | 3.19e-148 | 424 |
| MsG0380017109.01.T01 | MTR_8g461160 | 58.355 | 377 | 126 | 3 | 1 | 346 | 16 | 392 | 4.12e-145 | 416 |
| MsG0380017109.01.T01 | MTR_7g050810 | 57.256 | 379 | 131 | 3 | 1 | 348 | 26 | 404 | 4.76e-145 | 416 |
| MsG0380017109.01.T01 | MTR_3g101010 | 58.158 | 380 | 122 | 5 | 1 | 348 | 15 | 389 | 6.62e-145 | 415 |
| MsG0380017109.01.T01 | MTR_8g027395 | 57.937 | 378 | 122 | 4 | 1 | 348 | 27 | 397 | 8.99e-145 | 415 |
| MsG0380017109.01.T01 | MTR_3g018740 | 57.672 | 378 | 122 | 6 | 1 | 346 | 15 | 386 | 1.42e-141 | 406 |
| MsG0380017109.01.T01 | MTR_4g045707 | 56.728 | 379 | 127 | 5 | 1 | 348 | 16 | 388 | 2.68e-140 | 403 |
| MsG0380017109.01.T01 | MTR_8g027420 | 56.614 | 378 | 116 | 7 | 1 | 348 | 16 | 375 | 5.14e-134 | 387 |
| MsG0380017109.01.T01 | MTR_3g101030 | 51.786 | 392 | 144 | 4 | 1 | 348 | 39 | 429 | 2.40e-132 | 384 |
| MsG0380017109.01.T01 | MTR_4g088525 | 55.163 | 368 | 120 | 4 | 15 | 347 | 11 | 368 | 5.26e-130 | 376 |
| MsG0380017109.01.T01 | MTR_3g101200 | 56.131 | 367 | 113 | 4 | 7 | 346 | 45 | 390 | 1.39e-126 | 369 |
| MsG0380017109.01.T01 | MTR_3g101050 | 54.354 | 379 | 121 | 8 | 1 | 347 | 39 | 397 | 7.39e-121 | 354 |
| MsG0380017109.01.T01 | MTR_4g088535 | 54.167 | 360 | 136 | 6 | 1 | 342 | 17 | 365 | 4.07e-120 | 352 |
| MsG0380017109.01.T01 | MTR_2g045980 | 51.053 | 380 | 144 | 6 | 1 | 346 | 15 | 386 | 2.87e-119 | 350 |
| MsG0380017109.01.T01 | MTR_2g046030 | 50.789 | 380 | 145 | 6 | 1 | 346 | 15 | 386 | 5.39e-119 | 349 |
| MsG0380017109.01.T01 | MTR_3g048000 | 51.058 | 378 | 131 | 7 | 1 | 347 | 37 | 391 | 2.50e-118 | 347 |
| MsG0380017109.01.T01 | MTR_3g015620 | 50.266 | 376 | 134 | 6 | 1 | 346 | 26 | 378 | 1.61e-115 | 340 |
| MsG0380017109.01.T01 | MTR_3g102920 | 48.294 | 381 | 124 | 8 | 1 | 347 | 68 | 409 | 3.98e-105 | 314 |
| MsG0380017109.01.T01 | MTR_3g101190 | 51.488 | 336 | 125 | 7 | 15 | 348 | 13 | 312 | 7.08e-104 | 308 |
| MsG0380017109.01.T01 | MTR_7g050830 | 56.569 | 274 | 88 | 2 | 1 | 254 | 26 | 288 | 1.09e-100 | 300 |
| MsG0380017109.01.T01 | MTR_3g100010 | 53.872 | 297 | 93 | 3 | 16 | 268 | 40 | 336 | 1.71e-100 | 300 |
| MsG0380017109.01.T01 | MTR_3g100995 | 57.255 | 255 | 79 | 3 | 122 | 348 | 12 | 264 | 2.74e-95 | 284 |
| MsG0380017109.01.T01 | MTR_3g015760 | 55.431 | 267 | 85 | 7 | 112 | 346 | 15 | 279 | 8.69e-83 | 253 |
| MsG0380017109.01.T01 | MTR_3g018747 | 51.341 | 261 | 80 | 5 | 117 | 346 | 9 | 253 | 1.84e-78 | 241 |
| MsG0380017109.01.T01 | MTR_3g111160 | 53.953 | 215 | 65 | 3 | 165 | 348 | 9 | 220 | 6.50e-63 | 200 |
| MsG0380017109.01.T01 | MTR_3g100520 | 50.224 | 223 | 65 | 4 | 158 | 348 | 1 | 209 | 1.25e-62 | 199 |
| MsG0380017109.01.T01 | MTR_3g114310 | 35.401 | 387 | 199 | 11 | 7 | 348 | 30 | 410 | 2.34e-61 | 202 |
| MsG0380017109.01.T01 | MTR_3g099970 | 57.895 | 171 | 54 | 3 | 118 | 274 | 21 | 187 | 3.86e-59 | 189 |
| MsG0380017109.01.T01 | MTR_3g101110 | 46.781 | 233 | 65 | 4 | 123 | 322 | 74 | 280 | 3.61e-53 | 177 |
| MsG0380017109.01.T01 | MTR_2g046410 | 47.826 | 207 | 71 | 4 | 174 | 346 | 144 | 347 | 1.46e-50 | 172 |
| MsG0380017109.01.T01 | MTR_3g111150 | 47.953 | 171 | 63 | 3 | 1 | 171 | 9 | 153 | 2.63e-45 | 153 |
| MsG0380017109.01.T01 | MTR_3g101020 | 51.515 | 165 | 68 | 3 | 191 | 348 | 1 | 160 | 6.18e-44 | 149 |
| MsG0380017109.01.T01 | MTR_3g101150 | 52.532 | 158 | 42 | 4 | 223 | 347 | 1 | 158 | 1.51e-39 | 137 |
| MsG0380017109.01.T01 | MTR_3g100990 | 62.069 | 116 | 42 | 1 | 1 | 116 | 15 | 128 | 5.42e-37 | 139 |
| MsG0380017109.01.T01 | MTR_3g102870 | 45.062 | 162 | 54 | 3 | 182 | 308 | 3 | 164 | 1.02e-34 | 125 |
| MsG0380017109.01.T01 | MTR_3g101140 | 76.923 | 65 | 15 | 0 | 284 | 348 | 52 | 116 | 1.51e-26 | 102 |
| MsG0380017109.01.T01 | MTR_4g093550 | 57.895 | 76 | 30 | 1 | 1 | 76 | 16 | 89 | 2.37e-21 | 87.4 |
| MsG0380017109.01.T01 | MTR_6g046890 | 61.667 | 60 | 23 | 0 | 15 | 74 | 21 | 80 | 3.60e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017109.01.T01 | AT1G47710 | 44.474 | 380 | 173 | 6 | 1 | 346 | 15 | 390 | 1.50e-106 | 317 |
| MsG0380017109.01.T01 | AT1G47710 | 44.474 | 380 | 173 | 6 | 1 | 346 | 42 | 417 | 5.40e-106 | 317 |
| MsG0380017109.01.T01 | AT3G45220 | 42.120 | 368 | 167 | 5 | 17 | 345 | 30 | 390 | 1.03e-91 | 280 |
| MsG0380017109.01.T01 | AT2G26390 | 42.623 | 366 | 163 | 7 | 17 | 345 | 31 | 386 | 3.43e-91 | 278 |
| MsG0380017109.01.T01 | AT1G62170 | 43.020 | 351 | 178 | 6 | 14 | 347 | 88 | 433 | 3.99e-91 | 280 |
| MsG0380017109.01.T01 | AT1G64030 | 43.575 | 358 | 188 | 7 | 1 | 345 | 15 | 371 | 1.72e-90 | 276 |
| MsG0380017109.01.T01 | AT2G14540 | 43.605 | 344 | 181 | 4 | 14 | 345 | 55 | 397 | 7.41e-88 | 270 |
| MsG0380017109.01.T01 | AT2G25240 | 42.975 | 363 | 163 | 8 | 17 | 345 | 30 | 382 | 2.13e-87 | 268 |
| MsG0380017109.01.T01 | AT1G62170 | 39.583 | 384 | 177 | 7 | 14 | 347 | 88 | 466 | 4.58e-85 | 265 |
| MsG0380017109.01.T01 | AT2G35580 | 42.105 | 342 | 178 | 9 | 21 | 345 | 33 | 371 | 3.24e-82 | 254 |
| MsG0380017109.01.T01 | AT1G64010 | 48.241 | 199 | 88 | 4 | 158 | 345 | 1 | 195 | 4.47e-56 | 182 |
| MsG0380017109.01.T01 | AT1G64010 | 47.283 | 184 | 82 | 4 | 173 | 345 | 2 | 181 | 4.14e-48 | 160 |
| MsG0380017109.01.T01 | AT1G63280 | 53.390 | 118 | 51 | 2 | 114 | 229 | 5 | 120 | 1.04e-34 | 124 |
| MsG0380017109.01.T01 | AT1G51330 | 49.107 | 112 | 54 | 2 | 115 | 223 | 29 | 140 | 6.90e-28 | 108 |
| MsG0380017109.01.T01 | AT1G62160 | 40.761 | 184 | 88 | 6 | 180 | 347 | 42 | 220 | 8.38e-28 | 108 |
| MsG0380017109.01.T01 | AT1G64020 | 36.111 | 108 | 66 | 3 | 1 | 107 | 15 | 120 | 7.08e-12 | 62.4 |
Find 75 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCCAATCAGTGAATTTA+TGG | 0.159817 | 3:+92122309 | MsG0380017109.01.T01:CDS |
| TATGAGGAAGCTTGTCTTCT+AGG | 0.205127 | 3:-92122688 | None:intergenic |
| CTTGTCTTTATATTCTTCTT+TGG | 0.244807 | 3:-92121687 | None:intergenic |
| TGTCTTCTGCCAACGCTGTT+TGG | 0.258315 | 3:+92121897 | MsG0380017109.01.T01:CDS |
| CTGCCGCATTCACGGGAATT+AGG | 0.286210 | 3:+92122907 | MsG0380017109.01.T01:CDS |
| GTCTTCTGCCAACGCTGTTT+GGG | 0.287560 | 3:+92121898 | MsG0380017109.01.T01:CDS |
| CCTCTTCATGCTAGTCATAA+AGG | 0.293948 | 3:-92122513 | None:intergenic |
| AACTGTTGCTACTCATTATA+TGG | 0.315904 | 3:+92121958 | MsG0380017109.01.T01:CDS |
| GATGCAAAAGATGGGTTGTT+AGG | 0.331478 | 3:+92122632 | MsG0380017109.01.T01:CDS |
| CGGAAGCGACGTGAGAAGAT+AGG | 0.331599 | 3:-92121835 | None:intergenic |
| TCATCTTCACCTTGCTTGTA+AGG | 0.348281 | 3:-92122578 | None:intergenic |
| TTGATAAGAGAAGATTTATC+TGG | 0.365061 | 3:+92123002 | MsG0380017109.01.T01:CDS |
| AATCAGCTTCTGTCCTTTCT+CGG | 0.370054 | 3:+92121785 | MsG0380017109.01.T01:CDS |
| AGCCCATAAATTCACTGATT+GGG | 0.386856 | 3:-92122312 | None:intergenic |
| CGCTAAAGCTGCCGCATTCA+CGG | 0.392548 | 3:+92122899 | MsG0380017109.01.T01:CDS |
| CGAGGAGACTGAGAGCAGTT+TGG | 0.395888 | 3:-92121736 | None:intergenic |
| AGTACTGTAGAAACACTAAT+TGG | 0.400387 | 3:-92122843 | None:intergenic |
| TCTGGTACAATACTCTTTGT+TGG | 0.400415 | 3:+92123020 | MsG0380017109.01.T01:CDS |
| CAGCCCATAAATTCACTGAT+TGG | 0.401585 | 3:-92122313 | None:intergenic |
| GGAGCAATCGTTTGATGCTT+CGG | 0.404813 | 3:+92122439 | MsG0380017109.01.T01:CDS |
| CTGGTACAATACTCTTTGTT+GGG | 0.404814 | 3:+92123021 | MsG0380017109.01.T01:CDS |
| ATTCTTCTTTGGAGAACAAA+TGG | 0.423124 | 3:-92121676 | None:intergenic |
| CAAGTGCATAATCCTCTTGC+TGG | 0.429353 | 3:+92123044 | MsG0380017109.01.T01:CDS |
| CTCTTCATGCTAGTCATAAA+GGG | 0.432869 | 3:-92122512 | None:intergenic |
| TTCACGGGAATTAGGATGTA+TGG | 0.438848 | 3:+92122915 | MsG0380017109.01.T01:CDS |
| TTTCTTCCAGATGCAAAAGA+TGG | 0.444703 | 3:+92122623 | MsG0380017109.01.T01:CDS |
| AGTAGCAACAGTTTCTTTGA+AGG | 0.447416 | 3:-92121948 | None:intergenic |
| AGTGAATTTATGGGCTGAAA+AGG | 0.450449 | 3:+92122319 | MsG0380017109.01.T01:CDS |
| AACCCAATCAGTGAATTTAT+GGG | 0.457167 | 3:+92122310 | MsG0380017109.01.T01:CDS |
| GGAAGCGACGTGAGAAGATA+GGG | 0.462599 | 3:-92121834 | None:intergenic |
| CTCCTCGCTGTTGGTTCTGA+GGG | 0.470422 | 3:+92121752 | MsG0380017109.01.T01:CDS |
| TGAAGGAAGGGTAAACAGAA+AGG | 0.471470 | 3:-92121931 | None:intergenic |
| TGGGCTGAAAAGGAGACAAA+AGG | 0.472940 | 3:+92122329 | MsG0380017109.01.T01:CDS |
| GACAAGCATGGACCGCCGGC+AGG | 0.474957 | 3:-92121878 | None:intergenic |
| GTCAAACCTCCAAAAGAGAA+AGG | 0.475976 | 3:-92122804 | None:intergenic |
| TCTCCTCGCTGTTGGTTCTG+AGG | 0.490976 | 3:+92121751 | MsG0380017109.01.T01:CDS |
| GAAGGAAGGGTAAACAGAAA+GGG | 0.492254 | 3:-92121930 | None:intergenic |
| CAACAGTTTCTTTGAAGGAA+GGG | 0.497373 | 3:-92121943 | None:intergenic |
| CTCAAAGACGCTGCTCCTGC+CGG | 0.500555 | 3:+92121863 | MsG0380017109.01.T01:CDS |
| TTCTTTGGAGAACAAATGGT+TGG | 0.505452 | 3:-92121672 | None:intergenic |
| GCTCTCAGTCTCCTCGCTGT+TGG | 0.509513 | 3:+92121743 | MsG0380017109.01.T01:CDS |
| GCTAAAGCTGCCGCATTCAC+GGG | 0.511822 | 3:+92122900 | MsG0380017109.01.T01:CDS |
| GCAACAGTTTCTTTGAAGGA+AGG | 0.513025 | 3:-92121944 | None:intergenic |
| GACAAGCTTCCTCATACAAA+AGG | 0.515060 | 3:+92122695 | MsG0380017109.01.T01:CDS |
| ACAAATGCATTATACTTCAA+AGG | 0.517977 | 3:+92122410 | MsG0380017109.01.T01:CDS |
| TTCTTCCAGATGCAAAAGAT+GGG | 0.522138 | 3:+92122624 | MsG0380017109.01.T01:CDS |
| TGGTCAGCTACAAAGTCTAT+CGG | 0.526901 | 3:-92122966 | None:intergenic |
| GGGCTGAAAAGGAGACAAAA+GGG | 0.540477 | 3:+92122330 | MsG0380017109.01.T01:CDS |
| AGAAGACAAGCATGGACCGC+CGG | 0.545801 | 3:-92121882 | None:intergenic |
| GGTCAGCTACAAAGTCTATC+GGG | 0.550869 | 3:-92122965 | None:intergenic |
| CATTATACTTCAAAGGAGCA+TGG | 0.562007 | 3:+92122417 | MsG0380017109.01.T01:CDS |
| CTTAGTCTTCCTTACAAGCA+AGG | 0.563134 | 3:+92122569 | MsG0380017109.01.T01:CDS |
| GTTAGGTTTGATTGAGAAAG+CGG | 0.567281 | 3:+92122649 | MsG0380017109.01.T01:CDS |
| GGAGAACAAATGGTTGGCGA+TGG | 0.571262 | 3:-92121666 | None:intergenic |
| CCTTTATGACTAGCATGAAG+AGG | 0.571406 | 3:+92122513 | MsG0380017109.01.T01:CDS |
| AGAGCAGTTTGGAGCGACAA+TGG | 0.576794 | 3:-92121725 | None:intergenic |
| AGTTAAGATCATCCAGCAAG+AGG | 0.580534 | 3:-92123056 | None:intergenic |
| GATGGACTTTGATCCGAGAA+AGG | 0.581696 | 3:-92121798 | None:intergenic |
| GCTACAAAGTCTATCGGGAT+CGG | 0.596547 | 3:-92122960 | None:intergenic |
| TCTCAATGGCACCTCAGTCA+AGG | 0.599345 | 3:+92122487 | MsG0380017109.01.T01:CDS |
| ATTATACTTCAAAGGAGCAT+GGG | 0.601138 | 3:+92122418 | MsG0380017109.01.T01:CDS |
| TAGGGAGTTGAGATGGCCGA+TGG | 0.601672 | 3:-92121816 | None:intergenic |
| CTTGCTTGTAAGGAAGACTA+AGG | 0.608424 | 3:-92122568 | None:intergenic |
| CATCCTAATTCCCGTGAATG+CGG | 0.615111 | 3:-92122910 | None:intergenic |
| GAGAAGATAGGGAGTTGAGA+TGG | 0.618975 | 3:-92121823 | None:intergenic |
| AAAGACGCTGCTCCTGCCGG+CGG | 0.624527 | 3:+92121866 | MsG0380017109.01.T01:CDS |
| GAAATCAAGTGATTTGAGAG+TGG | 0.625530 | 3:-92121981 | None:intergenic |
| TTTCTCGGATCAAAGTCCAT+CGG | 0.660434 | 3:+92121800 | MsG0380017109.01.T01:CDS |
| GTTAAGCTATTAATCGACCC+AGG | 0.661094 | 3:-92122374 | None:intergenic |
| AGCAGCGTCTTTGAGAACAG+CGG | 0.665031 | 3:-92121855 | None:intergenic |
| TGACTGAGGTGCCATTGAGA+AGG | 0.673594 | 3:-92122484 | None:intergenic |
| GCGTTGGCAGAAGACAAGCA+TGG | 0.713189 | 3:-92121890 | None:intergenic |
| CATAAAGGGAACCTTGACTG+AGG | 0.721556 | 3:-92122498 | None:intergenic |
| GACCCTCAGAACCAACAGCG+AGG | 0.731995 | 3:-92121754 | None:intergenic |
| AAGCTATTAATCGACCCAGG+TGG | 0.746620 | 3:-92122371 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTTAGAATAGAAAATA+AGG | - | Chr3:92122090-92122109 | None:intergenic | 15.0% |
| !!! | TATATTTGATATTGTTTTGA+AGG | + | Chr3:92122277-92122296 | MsG0380017109.01.T01:intron | 15.0% |
| !! | TCAAAAGAAATATTGAATCT+TGG | - | Chr3:92122741-92122760 | None:intergenic | 20.0% |
| !! | TTAATCTACTAATCTAACAA+GGG | - | Chr3:92122063-92122082 | None:intergenic | 20.0% |
| !! | TTTAATCTACTAATCTAACA+AGG | - | Chr3:92122064-92122083 | None:intergenic | 20.0% |
| !!! | TATTTTGTTGTTAAATTGCT+TGG | - | Chr3:92122168-92122187 | None:intergenic | 20.0% |
| ! | ACAAATGCATTATACTTCAA+AGG | + | Chr3:92122410-92122429 | MsG0380017109.01.T01:CDS | 25.0% |
| ! | CTTGTCTTTATATTCTTCTT+TGG | - | Chr3:92121690-92121709 | None:intergenic | 25.0% |
| ! | TCTCTTATCAAAAACAAGAA+AGG | - | Chr3:92122993-92123012 | None:intergenic | 25.0% |
| ! | TTATCAAAAACAAGAAAGGA+TGG | - | Chr3:92122989-92123008 | None:intergenic | 25.0% |
| ! | TTGATAAGAGAAGATTTATC+TGG | + | Chr3:92123002-92123021 | MsG0380017109.01.T01:CDS | 25.0% |
| AACCCAATCAGTGAATTTAT+GGG | + | Chr3:92122310-92122329 | MsG0380017109.01.T01:CDS | 30.0% | |
| AACTGTTGCTACTCATTATA+TGG | + | Chr3:92121958-92121977 | MsG0380017109.01.T01:CDS | 30.0% | |
| AGTACTGTAGAAACACTAAT+TGG | - | Chr3:92122846-92122865 | None:intergenic | 30.0% | |
| TGAAATTTCTGATGTGTTGA+AGG | + | Chr3:92122764-92122783 | MsG0380017109.01.T01:intron | 30.0% | |
| ! | ATTATACTTCAAAGGAGCAT+GGG | + | Chr3:92122418-92122437 | MsG0380017109.01.T01:CDS | 30.0% |
| ! | ATTCTTCTTTGGAGAACAAA+TGG | - | Chr3:92121679-92121698 | None:intergenic | 30.0% |
| AGTAGCAACAGTTTCTTTGA+AGG | - | Chr3:92121951-92121970 | None:intergenic | 35.0% | |
| CAACCCAATCAGTGAATTTA+TGG | + | Chr3:92122309-92122328 | MsG0380017109.01.T01:CDS | 35.0% | |
| CATTATACTTCAAAGGAGCA+TGG | + | Chr3:92122417-92122436 | MsG0380017109.01.T01:CDS | 35.0% | |
| CTCTTCATGCTAGTCATAAA+GGG | - | Chr3:92122515-92122534 | None:intergenic | 35.0% | |
| CTGGTACAATACTCTTTGTT+GGG | + | Chr3:92123021-92123040 | MsG0380017109.01.T01:CDS | 35.0% | |
| GAAATCAAGTGATTTGAGAG+TGG | - | Chr3:92121984-92122003 | None:intergenic | 35.0% | |
| GTTAGGTTTGATTGAGAAAG+CGG | + | Chr3:92122649-92122668 | MsG0380017109.01.T01:CDS | 35.0% | |
| TCTGGTACAATACTCTTTGT+TGG | + | Chr3:92123020-92123039 | MsG0380017109.01.T01:CDS | 35.0% | |
| TTCTTCCAGATGCAAAAGAT+GGG | + | Chr3:92122624-92122643 | MsG0380017109.01.T01:CDS | 35.0% | |
| TTTCTTCCAGATGCAAAAGA+TGG | + | Chr3:92122623-92122642 | MsG0380017109.01.T01:CDS | 35.0% | |
| ! | AGCCCATAAATTCACTGATT+GGG | - | Chr3:92122315-92122334 | None:intergenic | 35.0% |
| ! | AGTGAATTTATGGGCTGAAA+AGG | + | Chr3:92122319-92122338 | MsG0380017109.01.T01:CDS | 35.0% |
| ! | ATTCGTAATTTTCTTCCACC+TGG | + | Chr3:92122356-92122375 | MsG0380017109.01.T01:CDS | 35.0% |
| ! | CAACAGTTTCTTTGAAGGAA+GGG | - | Chr3:92121946-92121965 | None:intergenic | 35.0% |
| ! | CAGTTTATCAGTGCTTTTGA+TGG | + | Chr3:92122536-92122555 | MsG0380017109.01.T01:CDS | 35.0% |
| ! | GTTTTACCTTTCTCTTTTGG+AGG | + | Chr3:92122798-92122817 | MsG0380017109.01.T01:CDS | 35.0% |
| ! | TACGATTTTCACCTTCTCAA+TGG | + | Chr3:92122473-92122492 | MsG0380017109.01.T01:CDS | 35.0% |
| ! | TTCGTAATTTTCTTCCACCT+GGG | + | Chr3:92122357-92122376 | MsG0380017109.01.T01:CDS | 35.0% |
| ! | TTCTTTGGAGAACAAATGGT+TGG | - | Chr3:92121675-92121694 | None:intergenic | 35.0% |
| !! | GTGGTTTTACCTTTCTCTTT+TGG | + | Chr3:92122795-92122814 | MsG0380017109.01.T01:CDS | 35.0% |
| AAGCTTCCTCATACAAAAGG+TGG | + | Chr3:92122698-92122717 | MsG0380017109.01.T01:intron | 40.0% | |
| AATCAGCTTCTGTCCTTTCT+CGG | + | Chr3:92121785-92121804 | MsG0380017109.01.T01:CDS | 40.0% | |
| CAGCCCATAAATTCACTGAT+TGG | - | Chr3:92122316-92122335 | None:intergenic | 40.0% | |
| CCTCTTCATGCTAGTCATAA+AGG | - | Chr3:92122516-92122535 | None:intergenic | 40.0% | |
| CCTTTATGACTAGCATGAAG+AGG | + | Chr3:92122513-92122532 | MsG0380017109.01.T01:CDS | 40.0% | |
| CTTGCTTGTAAGGAAGACTA+AGG | - | Chr3:92122571-92122590 | None:intergenic | 40.0% | |
| GAAGGAAGGGTAAACAGAAA+GGG | - | Chr3:92121933-92121952 | None:intergenic | 40.0% | |
| GACAAGCTTCCTCATACAAA+AGG | + | Chr3:92122695-92122714 | MsG0380017109.01.T01:CDS | 40.0% | |
| GTCAAACCTCCAAAAGAGAA+AGG | - | Chr3:92122807-92122826 | None:intergenic | 40.0% | |
| GTTAAGCTATTAATCGACCC+AGG | - | Chr3:92122377-92122396 | None:intergenic | 40.0% | |
| TATGAGGAAGCTTGTCTTCT+AGG | - | Chr3:92122691-92122710 | None:intergenic | 40.0% | |
| TCATCTTCACCTTGCTTGTA+AGG | - | Chr3:92122581-92122600 | None:intergenic | 40.0% | |
| TCTGATGTGTTGAAGGAGTT+AGG | + | Chr3:92122771-92122790 | MsG0380017109.01.T01:intron | 40.0% | |
| TGAAGGAAGGGTAAACAGAA+AGG | - | Chr3:92121934-92121953 | None:intergenic | 40.0% | |
| TGGTCAGCTACAAAGTCTAT+CGG | - | Chr3:92122969-92122988 | None:intergenic | 40.0% | |
| TTCACGGGAATTAGGATGTA+TGG | + | Chr3:92122915-92122934 | MsG0380017109.01.T01:CDS | 40.0% | |
| TTCCTCATACAAAAGGTGGT+AGG | + | Chr3:92122702-92122721 | MsG0380017109.01.T01:intron | 40.0% | |
| TTTCTCGGATCAAAGTCCAT+CGG | + | Chr3:92121800-92121819 | MsG0380017109.01.T01:CDS | 40.0% | |
| ! | AACAACCCATCTTTTGCATC+TGG | - | Chr3:92122632-92122651 | None:intergenic | 40.0% |
| ! | CTTAGTCTTCCTTACAAGCA+AGG | + | Chr3:92122569-92122588 | MsG0380017109.01.T01:CDS | 40.0% |
| ! | GCAACAGTTTCTTTGAAGGA+AGG | - | Chr3:92121947-92121966 | None:intergenic | 40.0% |
| !! | CAGTGCTTTTGATGGCTTTA+AGG | + | Chr3:92122544-92122563 | MsG0380017109.01.T01:CDS | 40.0% |
| !! | GACAGAAGCTGATTTTGTGT+GGG | - | Chr3:92121779-92121798 | None:intergenic | 40.0% |
| !! | GATGCAAAAGATGGGTTGTT+AGG | + | Chr3:92122632-92122651 | MsG0380017109.01.T01:CDS | 40.0% |
| !! | TTTTTCAACCCAAACAGCGT+TGG | - | Chr3:92121909-92121928 | None:intergenic | 40.0% |
| AAGCTATTAATCGACCCAGG+TGG | - | Chr3:92122374-92122393 | None:intergenic | 45.0% | |
| ACTACCATACAACAGTTGCG+AGG | - | Chr3:92122118-92122137 | None:intergenic | 45.0% | |
| CAAGTGCATAATCCTCTTGC+TGG | + | Chr3:92123044-92123063 | MsG0380017109.01.T01:CDS | 45.0% | |
| CATAAAGGGAACCTTGACTG+AGG | - | Chr3:92122501-92122520 | None:intergenic | 45.0% | |
| CATCCTAATTCCCGTGAATG+CGG | - | Chr3:92122913-92122932 | None:intergenic | 45.0% | |
| GAGAAGATAGGGAGTTGAGA+TGG | - | Chr3:92121826-92121845 | None:intergenic | 45.0% | |
| GCTACAAAGTCTATCGGGAT+CGG | - | Chr3:92122963-92122982 | None:intergenic | 45.0% | |
| GGAGCAATCGTTTGATGCTT+CGG | + | Chr3:92122439-92122458 | MsG0380017109.01.T01:CDS | 45.0% | |
| GGGCTGAAAAGGAGACAAAA+GGG | + | Chr3:92122330-92122349 | MsG0380017109.01.T01:CDS | 45.0% | |
| GGTCAGCTACAAAGTCTATC+GGG | - | Chr3:92122968-92122987 | None:intergenic | 45.0% | |
| TGGGCTGAAAAGGAGACAAA+AGG | + | Chr3:92122329-92122348 | MsG0380017109.01.T01:CDS | 45.0% | |
| TGTGTTGAAGGAGTTAGGAG+TGG | + | Chr3:92122776-92122795 | MsG0380017109.01.T01:intron | 45.0% | |
| ! | CACCTACCACCTTTTGTATG+AGG | - | Chr3:92122707-92122726 | None:intergenic | 45.0% |
| ! | GATGGACTTTGATCCGAGAA+AGG | - | Chr3:92121801-92121820 | None:intergenic | 45.0% |
| !! | GGACAGAAGCTGATTTTGTG+TGG | - | Chr3:92121780-92121799 | None:intergenic | 45.0% |
| CATACAACAGTTGCGAGGCA+TGG | - | Chr3:92122113-92122132 | None:intergenic | 50.0% | |
| CATGCCTCGCAACTGTTGTA+TGG | + | Chr3:92122111-92122130 | MsG0380017109.01.T01:intron | 50.0% | |
| GGAAGCGACGTGAGAAGATA+GGG | - | Chr3:92121837-92121856 | None:intergenic | 50.0% | |
| GGAGAACAAATGGTTGGCGA+TGG | - | Chr3:92121669-92121688 | None:intergenic | 50.0% | |
| GTCTTCTGCCAACGCTGTTT+GGG | + | Chr3:92121898-92121917 | MsG0380017109.01.T01:CDS | 50.0% | |
| TCTCAATGGCACCTCAGTCA+AGG | + | Chr3:92122487-92122506 | MsG0380017109.01.T01:CDS | 50.0% | |
| TGTCTTCTGCCAACGCTGTT+TGG | + | Chr3:92121897-92121916 | MsG0380017109.01.T01:CDS | 50.0% | |
| ! | AGAGCAGTTTGGAGCGACAA+TGG | - | Chr3:92121728-92121747 | None:intergenic | 50.0% |
| ! | AGCAGCGTCTTTGAGAACAG+CGG | - | Chr3:92121858-92121877 | None:intergenic | 50.0% |
| !! | TGACTGAGGTGCCATTGAGA+AGG | - | Chr3:92122487-92122506 | None:intergenic | 50.0% |
| AGAAGACAAGCATGGACCGC+CGG | - | Chr3:92121885-92121904 | None:intergenic | 55.0% | |
| CGAGGAGACTGAGAGCAGTT+TGG | - | Chr3:92121739-92121758 | None:intergenic | 55.0% | |
| CGCTAAAGCTGCCGCATTCA+CGG | + | Chr3:92122899-92122918 | MsG0380017109.01.T01:CDS | 55.0% | |
| CGGAAGCGACGTGAGAAGAT+AGG | - | Chr3:92121838-92121857 | None:intergenic | 55.0% | |
| CTGCCGCATTCACGGGAATT+AGG | + | Chr3:92122907-92122926 | MsG0380017109.01.T01:CDS | 55.0% | |
| GCTAAAGCTGCCGCATTCAC+GGG | + | Chr3:92122900-92122919 | MsG0380017109.01.T01:CDS | 55.0% | |
| TAGGGAGTTGAGATGGCCGA+TGG | - | Chr3:92121819-92121838 | None:intergenic | 55.0% | |
| ! | GCGTTGGCAGAAGACAAGCA+TGG | - | Chr3:92121893-92121912 | None:intergenic | 55.0% |
| !! | CTCCTCGCTGTTGGTTCTGA+GGG | + | Chr3:92121752-92121771 | MsG0380017109.01.T01:CDS | 55.0% |
| !! | TCTCCTCGCTGTTGGTTCTG+AGG | + | Chr3:92121751-92121770 | MsG0380017109.01.T01:CDS | 55.0% |
| CTCAAAGACGCTGCTCCTGC+CGG | + | Chr3:92121863-92121882 | MsG0380017109.01.T01:CDS | 60.0% | |
| GACCCTCAGAACCAACAGCG+AGG | - | Chr3:92121757-92121776 | None:intergenic | 60.0% | |
| GCTCTCAGTCTCCTCGCTGT+TGG | + | Chr3:92121743-92121762 | MsG0380017109.01.T01:CDS | 60.0% | |
| AAAGACGCTGCTCCTGCCGG+CGG | + | Chr3:92121866-92121885 | MsG0380017109.01.T01:CDS | 65.0% | |
| GACAAGCATGGACCGCCGGC+AGG | - | Chr3:92121881-92121900 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 92121662 | 92123070 | 92121662 | ID=MsG0380017109.01;Name=MsG0380017109.01 |
| Chr3 | mRNA | 92121662 | 92123070 | 92121662 | ID=MsG0380017109.01.T01;Parent=MsG0380017109.01;Name=MsG0380017109.01.T01;_AED=0.38;_eAED=0.39;_QI=0|0|0|1|1|1|3|0|348 |
| Chr3 | exon | 92121662 | 92122012 | 92121662 | ID=MsG0380017109.01.T01:exon:20711;Parent=MsG0380017109.01.T01 |
| Chr3 | exon | 92122299 | 92122716 | 92122299 | ID=MsG0380017109.01.T01:exon:20712;Parent=MsG0380017109.01.T01 |
| Chr3 | exon | 92122793 | 92123070 | 92122793 | ID=MsG0380017109.01.T01:exon:20713;Parent=MsG0380017109.01.T01 |
| Chr3 | CDS | 92121662 | 92122012 | 92121662 | ID=MsG0380017109.01.T01:cds;Parent=MsG0380017109.01.T01 |
| Chr3 | CDS | 92122299 | 92122716 | 92122299 | ID=MsG0380017109.01.T01:cds;Parent=MsG0380017109.01.T01 |
| Chr3 | CDS | 92122793 | 92123070 | 92122793 | ID=MsG0380017109.01.T01:cds;Parent=MsG0380017109.01.T01 |
| Gene Sequence |
| Protein sequence |
