AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026304.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026304.01.T01 MTR_5g043660 95.203 271 13 0 1 271 1 271 3.90e-103 301
MsG0580026304.01.T01 MTR_4g082830 38.136 118 54 5 1 105 1 112 5.15e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCGTTCCGGTGGTGGTTA+TGG 0.248929 5:+34402428 MsG0580026304.01.T01:CDS
GGTTATTCTGGTGGTGGGTT+TGG 0.263234 5:+34402236 MsG0580026304.01.T01:CDS
TGGATATGGTTATGTTAATT+AGG 0.263569 5:+34402730 MsG0580026304.01.T01:CDS
GGTGGAAATGGTGGTTATTA+TGG 0.263846 5:+34402257 MsG0580026304.01.T01:CDS
TGTTCACCTTGCCAGGTTCA+TGG 0.278749 5:-34402064 None:intergenic
GACCGCTATGAGAGTGGATA+TGG 0.279340 5:+34402539 MsG0580026304.01.T01:CDS
GGAGCTACTGGTGGTGGTTA+TGG 0.301488 5:+34402398 MsG0580026304.01.T01:CDS
ACCAGTTGCTCCTAAAATAT+TGG 0.302857 5:-34402111 None:intergenic
TATGGTAATGAGCAAAGTTT+TGG 0.303327 5:+34402668 MsG0580026304.01.T01:CDS
GGTGGTGGGTTTGGTGGAAA+TGG 0.307504 5:+34402245 MsG0580026304.01.T01:CDS
AACTACAGCAACAATTATTA+TGG 0.323996 5:+34401942 MsG0580026304.01.T01:CDS
TATGGATATGGAGGGCGTTC+TGG 0.326809 5:+34402641 MsG0580026304.01.T01:CDS
CGTTCAAGTATTGGTGGATA+TGG 0.328623 5:+34402593 MsG0580026304.01.T01:CDS
TTGGCCTTGTTCACCTTGCC+AGG 0.330282 5:-34402071 None:intergenic
GGGTATGGAGGTGGACGTTT+TGG 0.332134 5:+34402467 MsG0580026304.01.T01:CDS
GGTTATGGTGGAGGACGTTC+TGG 0.332283 5:+34402374 MsG0580026304.01.T01:CDS
TATTCTGGTGGTGGGTTTGG+TGG 0.342508 5:+34402239 MsG0580026304.01.T01:CDS
AGTCGCTTCAGTGGTGGATA+TGG 0.366456 5:+34402716 MsG0580026304.01.T01:CDS
GTCGTTCCGGTGGTGGTTAT+GGG 0.369280 5:+34402429 MsG0580026304.01.T01:CDS
TCTAGTGGTGGCTATGGATA+TGG 0.370645 5:+34402629 MsG0580026304.01.T01:CDS
GGAGGGCGTTCTGGTGGTTA+TGG 0.376684 5:+34402650 MsG0580026304.01.T01:CDS
GAGAGTGGTTATGGACGTTT+TGG 0.379000 5:+34402302 MsG0580026304.01.T01:CDS
GAGAGTGGATATGGGCGTTC+TGG 0.380092 5:+34402548 MsG0580026304.01.T01:CDS
GATCGCTCTGGTGGTGGTTA+TGG 0.380816 5:+34402509 MsG0580026304.01.T01:CDS
AAGTATCATGAGAGTGGTTA+TGG 0.384520 5:+34402293 MsG0580026304.01.T01:CDS
GGGCGTTCTGGTAGTGGATA+TGG 0.400902 5:+34402560 MsG0580026304.01.T01:CDS
AACAATTATTATGGTGGTCA+TGG 0.423344 5:+34401951 MsG0580026304.01.T01:CDS
TATGGTTCTAATGGTCGTTC+CGG 0.426041 5:+34402416 MsG0580026304.01.T01:CDS
GCCAGGTTCATGGTTGTAAA+CGG 0.432374 5:-34402054 None:intergenic
AATAATAACGAGAGTGGGTA+TGG 0.434805 5:+34402452 MsG0580026304.01.T01:CDS
GGTGGGTTTGGTGGAAATGG+TGG 0.442531 5:+34402248 MsG0580026304.01.T01:CDS
CACCATAACCACCACTATAT+CGG 0.453518 5:-34402361 None:intergenic
GGACGTTCTGGTGGAGCTAC+TGG 0.454859 5:+34402386 MsG0580026304.01.T01:CDS
GGATATGGGCGTTCTGGTAG+TGG 0.454988 5:+34402554 MsG0580026304.01.T01:CDS
GGTGGTGGTTATGGTTCTAA+TGG 0.459862 5:+34402407 MsG0580026304.01.T01:CDS
TCTAATGGTCGTTCCGGTGG+TGG 0.461776 5:+34402422 MsG0580026304.01.T01:CDS
GGTGGCAGTACTACTGGTAG+TGG 0.462302 5:+34402323 MsG0580026304.01.T01:CDS
GACCGATATAGTGGTGGTTA+TGG 0.464594 5:+34402359 MsG0580026304.01.T01:CDS
TCCACTCTCATAGCGGTCAT+TGG 0.474660 5:-34402534 None:intergenic
GGTCTTGATGACCGATATAG+TGG 0.491349 5:+34402350 MsG0580026304.01.T01:CDS
AGTACTACTGGTAGTGGTTA+CGG 0.491743 5:+34402329 MsG0580026304.01.T01:CDS
AACCGTTCTAGTGGTGGCTA+TGG 0.494450 5:+34402623 MsG0580026304.01.T01:CDS
GGAAGCGGCAACCGCAACCT+TGG 0.496409 5:-34402090 None:intergenic
GGTGAACAAGGCCAAGGTTG+CGG 0.521243 5:+34402079 MsG0580026304.01.T01:CDS
TGCTCCTAAAATATTGGAAG+CGG 0.533305 5:-34402105 None:intergenic
AACGAGAGTGGGTATGGAGG+TGG 0.536019 5:+34402458 MsG0580026304.01.T01:CDS
TCCGATGATCGCTCTGGTGG+TGG 0.538658 5:+34402503 MsG0580026304.01.T01:CDS
TCTTCCTCCGGTGTTCCTAC+CGG 0.539541 5:+34402203 MsG0580026304.01.T01:CDS
TGGTGTTGTTGATGAGAGAA+AGG 0.540028 5:+34402130 MsG0580026304.01.T01:CDS
GATAATAAGTATCATGAGAG+TGG 0.542680 5:+34402287 MsG0580026304.01.T01:CDS
TCCGTTTACAACCATGAACC+TGG 0.545196 5:+34402053 MsG0580026304.01.T01:CDS
AAAATGGTTATTCTGGTGGT+GGG 0.545962 5:+34402231 MsG0580026304.01.T01:CDS
ACCGCTATGAGAGTGGATAT+GGG 0.552395 5:+34402540 MsG0580026304.01.T01:CDS
TATGGGAATAATAACGAGAG+TGG 0.553125 5:+34402446 MsG0580026304.01.T01:CDS
TATAGTGGTGGTTATGGTGG+AGG 0.557933 5:+34402365 MsG0580026304.01.T01:CDS
GATGGAGGACGTTCAAGTAT+TGG 0.558070 5:+34402584 MsG0580026304.01.T01:CDS
AGTCAACATGACTCTTCCTC+CGG 0.559101 5:+34402191 MsG0580026304.01.T01:CDS
CGATATAGTGGTGGTTATGG+TGG 0.563412 5:+34402362 MsG0580026304.01.T01:CDS
CGTGATAGTCGCTTCAGTGG+TGG 0.564497 5:+34402710 MsG0580026304.01.T01:CDS
ATTATTCCCATAACCACCAC+CGG 0.569833 5:-34402435 None:intergenic
TTTGGAGGGTATGGTAGGGA+TGG 0.569920 5:+34402686 MsG0580026304.01.T01:CDS
ACAATTATTATGGTGGTCAT+GGG 0.571727 5:+34401952 MsG0580026304.01.T01:CDS
AGTGGTGGCTATGGATATGG+AGG 0.573815 5:+34402632 MsG0580026304.01.T01:CDS
AATAACGAGAGTGGGTATGG+AGG 0.576193 5:+34402455 MsG0580026304.01.T01:CDS
GGTTCTAATGGTCGTTCCGG+TGG 0.578894 5:+34402419 MsG0580026304.01.T01:CDS
GGATATGGAGGGCGTTCTGG+TGG 0.586766 5:+34402644 MsG0580026304.01.T01:CDS
TCTGGTGGAGCTACTGGTGG+TGG 0.587836 5:+34402392 MsG0580026304.01.T01:CDS
TATGGTTCCGATGATCGCTC+TGG 0.588825 5:+34402497 MsG0580026304.01.T01:CDS
TGAACCTGGCAAGGTGAACA+AGG 0.589426 5:+34402067 MsG0580026304.01.T01:CDS
GGAGAAGAAAACCGTTCTAG+TGG 0.590432 5:+34402614 MsG0580026304.01.T01:CDS
TCTGGTAGTGGATATGGTGA+TGG 0.595727 5:+34402566 MsG0580026304.01.T01:CDS
ATGGGAATAATAACGAGAGT+GGG 0.598404 5:+34402447 MsG0580026304.01.T01:CDS
GAAGAAAACCGTTCTAGTGG+TGG 0.605340 5:+34402617 MsG0580026304.01.T01:CDS
ACCACCACCAGAGCGATCAT+CGG 0.613164 5:-34402504 None:intergenic
GGAGGACGTTCAAGTATTGG+TGG 0.614595 5:+34402587 MsG0580026304.01.T01:CDS
TATGGTGGAGGACGTTCTGG+TGG 0.616657 5:+34402377 MsG0580026304.01.T01:CDS
TGGCAAGGTGAACAAGGCCA+AGG 0.617007 5:+34402073 MsG0580026304.01.T01:CDS
TTATTATGGTGGTCATGGGA+AGG 0.617040 5:+34401956 MsG0580026304.01.T01:CDS
GGTCGTGATAGTCGCTTCAG+TGG 0.617359 5:+34402707 MsG0580026304.01.T01:CDS
ATCCATAGCCACCACTAGAA+CGG 0.618974 5:-34402625 None:intergenic
GCCAATGACCGCTATGAGAG+TGG 0.621681 5:+34402533 MsG0580026304.01.T01:CDS
ATGTATGTTGATAAAGCCGC+TGG 0.625883 5:+34402161 MsG0580026304.01.T01:CDS
TTACAACCATGAACCTGGCA+AGG 0.628591 5:+34402058 MsG0580026304.01.T01:CDS
TACAGCAACAATTATTATGG+TGG 0.630011 5:+34401945 MsG0580026304.01.T01:CDS
CGTTCTGGTGGAGCTACTGG+TGG 0.645894 5:+34402389 MsG0580026304.01.T01:CDS
GGTGTTGTTGATGAGAGAAA+GGG 0.652776 5:+34402131 MsG0580026304.01.T01:CDS
GTTGATGAGAGAAAGGGCGT+TGG 0.655100 5:+34402137 MsG0580026304.01.T01:CDS
CTTGATGACCGATATAGTGG+TGG 0.667092 5:+34402353 MsG0580026304.01.T01:CDS
GTCTGACAAGACCTTAGCAG+AGG 0.667574 5:-34402021 None:intergenic
ATGTTGACTTAGATAACCAG+CGG 0.672962 5:-34402177 None:intergenic
GGTAGTGGATATGGTGATGG+AGG 0.676160 5:+34402569 MsG0580026304.01.T01:CDS
GGTTCCGATGATCGCTCTGG+TGG 0.677788 5:+34402500 MsG0580026304.01.T01:CDS
CATGGGAAGGAACAACGTCA+CGG 0.682273 5:+34401969 MsG0580026304.01.T01:CDS
TGCTAAGGTCTTGTCAGACG+CGG 0.692843 5:+34402025 MsG0580026304.01.T01:CDS
GTGGTGGCTATGGATATGGA+GGG 0.695224 5:+34402633 MsG0580026304.01.T01:CDS
TCGTCCGGTAGGAACACCGG+AGG 0.697557 5:-34402207 None:intergenic
GCCCATATCCACTCTCATAG+CGG 0.698484 5:-34402541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AACTACAGCAACAATTATTA+TGG + Chr5:34401942-34401961 MsG0580026304.01.T01:CDS 25.0%
AACAATTATTATGGTGGTCA+TGG + Chr5:34401951-34401970 MsG0580026304.01.T01:CDS 30.0%
ACAATTATTATGGTGGTCAT+GGG + Chr5:34401952-34401971 MsG0580026304.01.T01:CDS 30.0%
GATAATAAGTATCATGAGAG+TGG + Chr5:34402287-34402306 MsG0580026304.01.T01:CDS 30.0%
TACAGCAACAATTATTATGG+TGG + Chr5:34401945-34401964 MsG0580026304.01.T01:CDS 30.0%
!! TATGGTAATGAGCAAAGTTT+TGG + Chr5:34402668-34402687 MsG0580026304.01.T01:CDS 30.0%
!!! AGAATAACCATTTTTTCGTC+CGG - Chr5:34402225-34402244 None:intergenic 30.0%
AAAAATGGTTATTCTGGTGG+TGG + Chr5:34402230-34402249 MsG0580026304.01.T01:CDS 35.0%
AAAATGGTTATTCTGGTGGT+GGG + Chr5:34402231-34402250 MsG0580026304.01.T01:CDS 35.0%
AAGTATCATGAGAGTGGTTA+TGG + Chr5:34402293-34402312 MsG0580026304.01.T01:CDS 35.0%
AATAATAACGAGAGTGGGTA+TGG + Chr5:34402452-34402471 MsG0580026304.01.T01:CDS 35.0%
ACCAGTTGCTCCTAAAATAT+TGG - Chr5:34402114-34402133 None:intergenic 35.0%
ATGGGAATAATAACGAGAGT+GGG + Chr5:34402447-34402466 MsG0580026304.01.T01:CDS 35.0%
CGAAAAAATGGTTATTCTGG+TGG + Chr5:34402227-34402246 MsG0580026304.01.T01:CDS 35.0%
GGACGAAAAAATGGTTATTC+TGG + Chr5:34402224-34402243 MsG0580026304.01.T01:CDS 35.0%
TATGGGAATAATAACGAGAG+TGG + Chr5:34402446-34402465 MsG0580026304.01.T01:CDS 35.0%
TGCTCCTAAAATATTGGAAG+CGG - Chr5:34402108-34402127 None:intergenic 35.0%
!! ATGTTGACTTAGATAACCAG+CGG - Chr5:34402180-34402199 None:intergenic 35.0%
!! TCCAATATTTTAGGAGCAAC+TGG + Chr5:34402110-34402129 MsG0580026304.01.T01:CDS 35.0%
!!! GTAATGAGCAAAGTTTTGGA+GGG + Chr5:34402672-34402691 MsG0580026304.01.T01:CDS 35.0%
ATTATTCCCATAACCACCAC+CGG - Chr5:34402438-34402457 None:intergenic 40.0%
CACCATAACCACCACTATAT+CGG - Chr5:34402364-34402383 None:intergenic 40.0%
CTTAGCAGAGGAAAAAAGCT+CGG - Chr5:34402012-34402031 None:intergenic 40.0%
GGTGGAAATGGTGGTTATTA+TGG + Chr5:34402257-34402276 MsG0580026304.01.T01:CDS 40.0%
TTATTATGGTGGTCATGGGA+AGG + Chr5:34401956-34401975 MsG0580026304.01.T01:CDS 40.0%
! ATGTATGTTGATAAAGCCGC+TGG + Chr5:34402161-34402180 MsG0580026304.01.T01:CDS 40.0%
!! AGTACTACTGGTAGTGGTTA+CGG + Chr5:34402329-34402348 MsG0580026304.01.T01:CDS 40.0%
!! CGTTCAAGTATTGGTGGATA+TGG + Chr5:34402593-34402612 MsG0580026304.01.T01:CDS 40.0%
!! GGTAATGAGCAAAGTTTTGG+AGG + Chr5:34402671-34402690 MsG0580026304.01.T01:CDS 40.0%
!! GGTGTTGTTGATGAGAGAAA+GGG + Chr5:34402131-34402150 MsG0580026304.01.T01:CDS 40.0%
!! GTTGCCGCTTCCAATATTTT+AGG + Chr5:34402101-34402120 MsG0580026304.01.T01:CDS 40.0%
!! TATGGTTCTAATGGTCGTTC+CGG + Chr5:34402416-34402435 MsG0580026304.01.T01:CDS 40.0%
!! TGGTGTTGTTGATGAGAGAA+AGG + Chr5:34402130-34402149 MsG0580026304.01.T01:CDS 40.0%
!!! AAAGTTTTGGAGGGTATGGT+AGG + Chr5:34402681-34402700 MsG0580026304.01.T01:CDS 40.0%
!!! AAGTTTTGGAGGGTATGGTA+GGG + Chr5:34402682-34402701 MsG0580026304.01.T01:CDS 40.0%
!!! TAACCATTTTTTCGTCCGGT+AGG - Chr5:34402221-34402240 None:intergenic 40.0%
AATAACGAGAGTGGGTATGG+AGG + Chr5:34402455-34402474 MsG0580026304.01.T01:CDS 45.0%
ACCGCTATGAGAGTGGATAT+GGG + Chr5:34402540-34402559 MsG0580026304.01.T01:CDS 45.0%
AGTCAACATGACTCTTCCTC+CGG + Chr5:34402191-34402210 MsG0580026304.01.T01:CDS 45.0%
ATCCATAGCCACCACTAGAA+CGG - Chr5:34402628-34402647 None:intergenic 45.0%
CGATATAGTGGTGGTTATGG+TGG + Chr5:34402362-34402381 MsG0580026304.01.T01:CDS 45.0%
GAAGAAAACCGTTCTAGTGG+TGG + Chr5:34402617-34402636 MsG0580026304.01.T01:CDS 45.0%
GACCGATATAGTGGTGGTTA+TGG + Chr5:34402359-34402378 MsG0580026304.01.T01:CDS 45.0%
GATGGAGGACGTTCAAGTAT+TGG + Chr5:34402584-34402603 MsG0580026304.01.T01:CDS 45.0%
GCCAGGTTCATGGTTGTAAA+CGG - Chr5:34402057-34402076 None:intergenic 45.0%
GGAGAAGAAAACCGTTCTAG+TGG + Chr5:34402614-34402633 MsG0580026304.01.T01:CDS 45.0%
GTTCCTACCGGACGAAAAAA+TGG + Chr5:34402215-34402234 MsG0580026304.01.T01:CDS 45.0%
TATAGTGGTGGTTATGGTGG+AGG + Chr5:34402365-34402384 MsG0580026304.01.T01:CDS 45.0%
TCCGTTTACAACCATGAACC+TGG + Chr5:34402053-34402072 MsG0580026304.01.T01:CDS 45.0%
TCTAGTGGTGGCTATGGATA+TGG + Chr5:34402629-34402648 MsG0580026304.01.T01:CDS 45.0%
TTACAACCATGAACCTGGCA+AGG + Chr5:34402058-34402077 MsG0580026304.01.T01:CDS 45.0%
! AGTGGTTATGGACGTTTTGG+TGG + Chr5:34402305-34402324 MsG0580026304.01.T01:CDS 45.0%
! CTTGATGACCGATATAGTGG+TGG + Chr5:34402353-34402372 MsG0580026304.01.T01:CDS 45.0%
! GAGAGTGGTTATGGACGTTT+TGG + Chr5:34402302-34402321 MsG0580026304.01.T01:CDS 45.0%
! GGTCTTGATGACCGATATAG+TGG + Chr5:34402350-34402369 MsG0580026304.01.T01:CDS 45.0%
!! GGTGGTGGTTATGGTTCTAA+TGG + Chr5:34402407-34402426 MsG0580026304.01.T01:CDS 45.0%
!! TCTGGTAGTGGATATGGTGA+TGG + Chr5:34402566-34402585 MsG0580026304.01.T01:CDS 45.0%
!!! CGAGCTTTTTTCCTCTGCTA+AGG + Chr5:34402010-34402029 MsG0580026304.01.T01:CDS 45.0%
!!! GAGCAAAGTTTTGGAGGGTA+TGG + Chr5:34402677-34402696 MsG0580026304.01.T01:CDS 45.0%
AACCGTTCTAGTGGTGGCTA+TGG + Chr5:34402623-34402642 MsG0580026304.01.T01:CDS 50.0%
AGTGGTGGCTATGGATATGG+AGG + Chr5:34402632-34402651 MsG0580026304.01.T01:CDS 50.0%
CATGGGAAGGAACAACGTCA+CGG + Chr5:34401969-34401988 MsG0580026304.01.T01:CDS 50.0%
GACCGCTATGAGAGTGGATA+TGG + Chr5:34402539-34402558 MsG0580026304.01.T01:CDS 50.0%
GCCCATATCCACTCTCATAG+CGG - Chr5:34402544-34402563 None:intergenic 50.0%
GTCTGACAAGACCTTAGCAG+AGG - Chr5:34402024-34402043 None:intergenic 50.0%
GTGGTGGCTATGGATATGGA+GGG + Chr5:34402633-34402652 MsG0580026304.01.T01:CDS 50.0%
TATGGTTCCGATGATCGCTC+TGG + Chr5:34402497-34402516 MsG0580026304.01.T01:CDS 50.0%
TCCACTCTCATAGCGGTCAT+TGG - Chr5:34402537-34402556 None:intergenic 50.0%
TGAACCTGGCAAGGTGAACA+AGG + Chr5:34402067-34402086 MsG0580026304.01.T01:CDS 50.0%
TGTTCACCTTGCCAGGTTCA+TGG - Chr5:34402067-34402086 None:intergenic 50.0%
! GTTGATGAGAGAAAGGGCGT+TGG + Chr5:34402137-34402156 MsG0580026304.01.T01:CDS 50.0%
! TATGGAGGTGGACGTTTTGG+TGG + Chr5:34402470-34402489 MsG0580026304.01.T01:CDS 50.0%
! TGCTAAGGTCTTGTCAGACG+CGG + Chr5:34402025-34402044 MsG0580026304.01.T01:CDS 50.0%
! TTTGGAGGGTATGGTAGGGA+TGG + Chr5:34402686-34402705 MsG0580026304.01.T01:CDS 50.0%
! TTTTCGTCCGGTAGGAACAC+CGG - Chr5:34402213-34402232 None:intergenic 50.0%
!! AGTCGCTTCAGTGGTGGATA+TGG + Chr5:34402716-34402735 MsG0580026304.01.T01:CDS 50.0%
!! CGTTTTGGTGGCAGTACTAC+TGG + Chr5:34402317-34402336 MsG0580026304.01.T01:CDS 50.0%
!! GGAGGACGTTCAAGTATTGG+TGG + Chr5:34402587-34402606 MsG0580026304.01.T01:CDS 50.0%
!! GGTAGTGGATATGGTGATGG+AGG + Chr5:34402569-34402588 MsG0580026304.01.T01:CDS 50.0%
!! GGTTATTCTGGTGGTGGGTT+TGG + Chr5:34402236-34402255 MsG0580026304.01.T01:CDS 50.0%
!! TATGGATATGGAGGGCGTTC+TGG + Chr5:34402641-34402660 MsG0580026304.01.T01:CDS 50.0%
!! TATTCTGGTGGTGGGTTTGG+TGG + Chr5:34402239-34402258 MsG0580026304.01.T01:CDS 50.0%
!!! GGACGTTTTGGTGGTGGTTA+TGG + Chr5:34402479-34402498 MsG0580026304.01.T01:CDS 50.0%
AACGAGAGTGGGTATGGAGG+TGG + Chr5:34402458-34402477 MsG0580026304.01.T01:CDS 55.0%
ACCACCACCAGAGCGATCAT+CGG - Chr5:34402507-34402526 None:intergenic 55.0%
CGTGATAGTCGCTTCAGTGG+TGG + Chr5:34402710-34402729 MsG0580026304.01.T01:CDS 55.0%
GAGAGTGGATATGGGCGTTC+TGG + Chr5:34402548-34402567 MsG0580026304.01.T01:CDS 55.0%
GCCAATGACCGCTATGAGAG+TGG + Chr5:34402533-34402552 MsG0580026304.01.T01:CDS 55.0%
GGATATGGGCGTTCTGGTAG+TGG + Chr5:34402554-34402573 MsG0580026304.01.T01:CDS 55.0%
GGTCGTGATAGTCGCTTCAG+TGG + Chr5:34402707-34402726 MsG0580026304.01.T01:CDS 55.0%
GGTGAACAAGGCCAAGGTTG+CGG + Chr5:34402079-34402098 MsG0580026304.01.T01:CDS 55.0%
GGTGGCAGTACTACTGGTAG+TGG + Chr5:34402323-34402342 MsG0580026304.01.T01:CDS 55.0%
TCTAATGGTCGTTCCGGTGG+TGG + Chr5:34402422-34402441 MsG0580026304.01.T01:CDS 55.0%
TCTTCCTCCGGTGTTCCTAC+CGG + Chr5:34402203-34402222 MsG0580026304.01.T01:CDS 55.0%
TGGCAAGGTGAACAAGGCCA+AGG + Chr5:34402073-34402092 MsG0580026304.01.T01:CDS 55.0%
! GGGTATGGAGGTGGACGTTT+TGG + Chr5:34402467-34402486 MsG0580026304.01.T01:CDS 55.0%
! GGTTATGGTGGAGGACGTTC+TGG + Chr5:34402374-34402393 MsG0580026304.01.T01:CDS 55.0%
! GGTTCTAATGGTCGTTCCGG+TGG + Chr5:34402419-34402438 MsG0580026304.01.T01:CDS 55.0%
! GTCGTTCCGGTGGTGGTTAT+GGG + Chr5:34402429-34402448 MsG0580026304.01.T01:CDS 55.0%
! TATGGTGGAGGACGTTCTGG+TGG + Chr5:34402377-34402396 MsG0580026304.01.T01:CDS 55.0%
!! GATCGCTCTGGTGGTGGTTA+TGG + Chr5:34402509-34402528 MsG0580026304.01.T01:CDS 55.0%
!! GGAGCTACTGGTGGTGGTTA+TGG + Chr5:34402398-34402417 MsG0580026304.01.T01:CDS 55.0%
!! GGGCGTTCTGGTAGTGGATA+TGG + Chr5:34402560-34402579 MsG0580026304.01.T01:CDS 55.0%
!! GGTGGGTTTGGTGGAAATGG+TGG + Chr5:34402248-34402267 MsG0580026304.01.T01:CDS 55.0%
!! GGTGGTGGGTTTGGTGGAAA+TGG + Chr5:34402245-34402264 MsG0580026304.01.T01:CDS 55.0%
!! TTGGCCTTGTTCACCTTGCC+AGG - Chr5:34402074-34402093 None:intergenic 55.0%
CGTTCTGGTGGAGCTACTGG+TGG + Chr5:34402389-34402408 MsG0580026304.01.T01:CDS 60.0%
GGACGTTCTGGTGGAGCTAC+TGG + Chr5:34402386-34402405 MsG0580026304.01.T01:CDS 60.0%
GGTTCCGATGATCGCTCTGG+TGG + Chr5:34402500-34402519 MsG0580026304.01.T01:CDS 60.0%
TCCGATGATCGCTCTGGTGG+TGG + Chr5:34402503-34402522 MsG0580026304.01.T01:CDS 60.0%
TCTGGTGGAGCTACTGGTGG+TGG + Chr5:34402392-34402411 MsG0580026304.01.T01:CDS 60.0%
! GGTCGTTCCGGTGGTGGTTA+TGG + Chr5:34402428-34402447 MsG0580026304.01.T01:CDS 60.0%
!! GGAGGGCGTTCTGGTGGTTA+TGG + Chr5:34402650-34402669 MsG0580026304.01.T01:CDS 60.0%
!! GGAGGTGGACGTTTTGGTGG+TGG + Chr5:34402473-34402492 MsG0580026304.01.T01:CDS 60.0%
!! GGATATGGAGGGCGTTCTGG+TGG + Chr5:34402644-34402663 MsG0580026304.01.T01:CDS 60.0%
GGAAGCGGCAACCGCAACCT+TGG - Chr5:34402093-34402112 None:intergenic 65.0%
TCGTCCGGTAGGAACACCGG+AGG - Chr5:34402210-34402229 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 34401936 34402751 34401936 ID=MsG0580026304.01;Name=MsG0580026304.01
Chr5 mRNA 34401936 34402751 34401936 ID=MsG0580026304.01.T01;Parent=MsG0580026304.01;Name=MsG0580026304.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|271
Chr5 exon 34401936 34402751 34401936 ID=MsG0580026304.01.T01:exon:13901;Parent=MsG0580026304.01.T01
Chr5 CDS 34401936 34402751 34401936 ID=MsG0580026304.01.T01:cds;Parent=MsG0580026304.01.T01
Gene Sequence

>MsG0580026304.01.T01

ATGGACAACTACAGCAACAATTATTATGGTGGTCATGGGAAGGAACAACGTCACGGTCAGAATCATTCGAGTACCGAGCTTTTTTCCTCTGCTAAGGTCTTGTCAGACGCGGCACAGTCCGTTTACAACCATGAACCTGGCAAGGTGAACAAGGCCAAGGTTGCGGTTGCCGCTTCCAATATTTTAGGAGCAACTGGTGTTGTTGATGAGAGAAAGGGCGTTGGCATGTATGTTGATAAAGCCGCTGGTTATCTAAGTCAACATGACTCTTCCTCCGGTGTTCCTACCGGACGAAAAAATGGTTATTCTGGTGGTGGGTTTGGTGGAAATGGTGGTTATTATGGAAATAAAGATAATAAGTATCATGAGAGTGGTTATGGACGTTTTGGTGGCAGTACTACTGGTAGTGGTTACGGTCTTGATGACCGATATAGTGGTGGTTATGGTGGAGGACGTTCTGGTGGAGCTACTGGTGGTGGTTATGGTTCTAATGGTCGTTCCGGTGGTGGTTATGGGAATAATAACGAGAGTGGGTATGGAGGTGGACGTTTTGGTGGTGGTTATGGTTCCGATGATCGCTCTGGTGGTGGTTATGGCGCCAATGACCGCTATGAGAGTGGATATGGGCGTTCTGGTAGTGGATATGGTGATGGAGGACGTTCAAGTATTGGTGGATATGGAGAAGAAAACCGTTCTAGTGGTGGCTATGGATATGGAGGGCGTTCTGGTGGTTATGGTAATGAGCAAAGTTTTGGAGGGTATGGTAGGGATGGTCGTGATAGTCGCTTCAGTGGTGGATATGGTTATGTTAATTAG

Protein sequence

>MsG0580026304.01.T01

MDNYSNNYYGGHGKEQRHGQNHSSTELFSSAKVLSDAAQSVYNHEPGKVNKAKVAVAASNILGATGVVDERKGVGMYVDKAAGYLSQHDSSSGVPTGRKNGYSGGGFGGNGGYYGNKDNKYHESGYGRFGGSTTGSGYGLDDRYSGGYGGGRSGGATGGGYGSNGRSGGGYGNNNESGYGGGRFGGGYGSDDRSGGGYGANDRYESGYGRSGSGYGDGGRSSIGGYGEENRSSGGYGYGGRSGGYGNEQSFGGYGRDGRDSRFSGGYGYVN*