AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041852.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041852.01.T01 MTR_8g006710 76.020 196 13 3 5 166 257 452 1.72e-93 280
MsG0880041852.01.T01 MTR_8g006730 73.604 197 16 4 5 166 258 453 2.60e-89 270
MsG0880041852.01.T01 MTR_6g023665 62.564 195 39 4 5 165 263 457 3.62e-72 226
MsG0880041852.01.T01 MTR_6g488280 61.224 196 42 4 5 166 256 451 2.97e-71 223
MsG0880041852.01.T01 MTR_0428s0010 61.224 196 42 4 5 166 256 451 2.97e-71 223
MsG0880041852.01.T01 MTR_8g465670 50.000 202 61 5 5 166 256 457 2.37e-53 177
MsG0880041852.01.T01 MTR_7g046490 47.208 197 65 5 5 164 254 448 6.53e-47 160
MsG0880041852.01.T01 MTR_0078s0010 45.026 191 70 4 5 161 258 447 1.26e-45 157
MsG0880041852.01.T01 MTR_0184s0040 44.500 200 71 5 5 170 273 466 2.83e-45 156
MsG0880041852.01.T01 MTR_0078s0190 44.500 200 71 5 5 170 273 466 2.83e-45 156
MsG0880041852.01.T01 MTR_8g006270 45.078 193 69 6 5 161 254 445 3.28e-44 153
MsG0880041852.01.T01 MTR_8g012635 46.500 200 68 6 5 166 260 458 6.09e-44 152
MsG0880041852.01.T01 MTR_8g012630 47.739 199 65 6 5 165 204 401 7.56e-44 151
MsG0880041852.01.T01 MTR_8g006260 46.392 194 68 5 7 165 263 455 8.00e-44 152
MsG0880041852.01.T01 MTR_0184s0030 48.223 197 64 6 5 165 259 453 9.35e-44 152
MsG0880041852.01.T01 MTR_8g009067 43.367 196 76 4 5 166 139 333 1.46e-43 149
MsG0880041852.01.T01 MTR_8g009073 43.655 197 74 5 5 166 128 322 3.17e-43 147
MsG0880041852.01.T01 MTR_8g009067 43.367 196 76 4 5 166 257 451 9.86e-43 149
MsG0880041852.01.T01 MTR_8g012730 45.078 193 67 5 7 161 99 290 9.94e-43 145
MsG0880041852.01.T01 MTR_0078s0060 43.478 184 69 4 5 154 257 439 1.48e-42 149
MsG0880041852.01.T01 MTR_7g047030 43.455 191 73 4 5 161 258 447 1.95e-42 148
MsG0880041852.01.T01 MTR_7g047270 43.455 191 73 4 5 161 258 447 1.95e-42 148
MsG0880041852.01.T01 MTR_8g009073 43.655 197 74 5 5 166 257 451 1.99e-42 148
MsG0880041852.01.T01 MTR_8g006220 45.000 200 62 5 5 156 255 454 2.76e-42 148
MsG0880041852.01.T01 MTR_8g008990 43.500 200 74 5 5 166 257 455 2.70e-41 145
MsG0880041852.01.T01 MTR_8g008970 42.857 196 77 4 5 166 257 451 7.87e-41 147
MsG0880041852.01.T01 MTR_8g008970 40.426 188 78 7 5 166 596 775 1.07e-27 109
MsG0880041852.01.T01 MTR_7g117170 42.211 199 78 7 4 166 265 462 1.39e-40 144
MsG0880041852.01.T01 MTR_1g019520 42.132 197 78 3 5 166 4 199 1.89e-40 137
MsG0880041852.01.T01 MTR_6g005600 45.729 199 70 6 5 166 257 454 2.71e-40 143
MsG0880041852.01.T01 MTR_8g027885 40.909 198 80 5 5 166 263 459 3.01e-40 142
MsG0880041852.01.T01 MTR_8g012650 42.000 200 77 5 5 166 260 458 4.36e-40 142
MsG0880041852.01.T01 MTR_8g027870 40.404 198 81 5 5 166 263 459 1.04e-39 141
MsG0880041852.01.T01 MTR_8g077590 42.929 198 71 6 5 165 260 452 1.41e-39 140
MsG0880041852.01.T01 MTR_1g019510 41.117 197 80 5 5 166 255 450 5.65e-39 139
MsG0880041852.01.T01 MTR_8g009055 43.434 198 75 4 5 166 257 453 7.71e-39 139
MsG0880041852.01.T01 MTR_8g009050 43.434 198 75 5 5 166 257 453 7.83e-38 136
MsG0880041852.01.T01 MTR_8g012745 42.424 198 76 6 5 166 260 455 7.99e-38 136
MsG0880041852.01.T01 MTR_8g074550 38.596 228 83 7 5 175 262 489 5.73e-37 134
MsG0880041852.01.T01 MTR_8g009063 43.434 198 75 4 5 166 264 460 1.93e-36 132
MsG0880041852.01.T01 MTR_5g019580 38.384 198 83 6 5 163 265 462 2.02e-33 124
MsG0880041852.01.T01 MTR_5g019580 38.889 198 82 5 5 163 289 486 2.72e-33 124
MsG0880041852.01.T01 MTR_6g033615 35.484 186 93 4 5 164 251 435 7.97e-25 100
MsG0880041852.01.T01 MTR_6g038240 33.155 187 101 5 5 168 264 449 2.89e-24 99.4
MsG0880041852.01.T01 MTR_6g033675 35.789 190 81 5 5 161 265 446 3.42e-24 99.4
MsG0880041852.01.T01 MTR_8g009840 37.500 200 81 6 8 166 316 512 3.43e-24 99.4
MsG0880041852.01.T01 MTR_6g033625 34.946 186 94 4 5 164 265 449 4.39e-24 99.0
MsG0880041852.01.T01 MTR_3g009510 35.326 184 80 4 5 150 265 447 4.32e-23 96.3
MsG0880041852.01.T01 MTR_7g080940 36.782 174 89 5 5 158 262 434 1.34e-22 94.7
MsG0880041852.01.T01 MTR_6g033660 33.684 190 85 5 5 161 264 445 2.09e-22 94.4
MsG0880041852.01.T01 MTR_6g038200 38.922 167 76 5 5 150 264 425 2.33e-22 94.0
MsG0880041852.01.T01 MTR_5g016660 34.211 190 92 4 5 161 276 465 3.11e-22 93.6
MsG0880041852.01.T01 MTR_4g485630 34.615 182 87 4 5 154 267 448 4.36e-22 93.2
MsG0880041852.01.T01 MTR_7g070940 34.536 194 93 5 5 164 264 457 7.77e-22 92.4
MsG0880041852.01.T01 MTR_7g080935 34.010 197 106 6 5 178 262 457 8.82e-22 92.4
MsG0880041852.01.T01 MTR_7g070810 35.354 198 92 7 5 166 265 462 9.73e-22 92.4
MsG0880041852.01.T01 MTR_6g038220 37.725 167 78 5 5 150 263 424 1.08e-21 92.0
MsG0880041852.01.T01 MTR_6g038230 36.585 164 86 5 4 150 263 425 3.03e-21 90.9
MsG0880041852.01.T01 MTR_7g070860 38.043 184 86 8 5 164 268 447 4.29e-21 90.5
MsG0880041852.01.T01 MTR_7g070780 37.234 188 76 8 5 154 275 458 7.72e-21 89.7
MsG0880041852.01.T01 MTR_7g013200 35.326 184 95 8 4 166 249 429 9.06e-21 89.4
MsG0880041852.01.T01 MTR_8g088560 33.846 195 89 7 5 167 264 450 1.51e-20 89.0
MsG0880041852.01.T01 MTR_2g040530 32.178 202 86 6 5 165 259 450 1.73e-20 88.6
MsG0880041852.01.T01 MTR_5g072860 36.170 188 93 8 5 168 275 459 2.36e-20 88.2
MsG0880041852.01.T01 MTR_6g013440 29.082 196 106 6 5 177 289 474 4.06e-20 87.8
MsG0880041852.01.T01 MTR_4g485620 32.558 215 97 7 5 183 254 456 5.26e-20 87.4
MsG0880041852.01.T01 MTR_7g070800 34.536 194 93 5 5 164 267 460 5.45e-20 87.4
MsG0880041852.01.T01 MTR_6g038300 31.915 188 103 6 5 168 264 450 6.94e-20 87.0
MsG0880041852.01.T01 MTR_8g066610 33.333 198 104 5 5 176 277 472 1.21e-19 86.3
MsG0880041852.01.T01 MTR_3g008010 33.333 195 99 7 5 177 286 471 1.69e-19 85.9
MsG0880041852.01.T01 MTR_7g070610 32.821 195 96 4 5 164 277 471 2.17e-19 85.5
MsG0880041852.01.T01 MTR_6g013990 33.333 180 93 6 5 162 286 460 2.67e-19 85.5
MsG0880041852.01.T01 MTR_2g046820 32.308 195 97 5 5 166 257 449 2.73e-19 85.1
MsG0880041852.01.T01 MTR_6g033725 29.302 215 110 6 5 185 262 468 3.87e-19 84.7
MsG0880041852.01.T01 MTR_7g013240 34.682 173 89 8 5 156 250 419 3.87e-19 84.7
MsG0880041852.01.T01 MTR_7g070740 33.696 184 88 4 5 154 275 458 3.96e-19 84.7
MsG0880041852.01.T01 MTR_7g070660 32.821 195 96 4 5 164 270 464 4.74e-19 84.7
MsG0880041852.01.T01 MTR_7g013220 34.239 184 95 9 5 166 261 440 5.62e-19 84.3
MsG0880041852.01.T01 MTR_4g095008 31.771 192 89 7 2 155 256 443 6.37e-19 84.3
MsG0880041852.01.T01 MTR_5g035560 35.754 179 94 7 5 164 260 436 6.53e-19 84.3
MsG0880041852.01.T01 MTR_0036s0220 32.796 186 82 7 5 159 286 459 1.10e-18 83.6
MsG0880041852.01.T01 MTR_6g014050 33.511 188 93 7 5 170 289 466 1.32e-18 83.2
MsG0880041852.01.T01 MTR_7g071050 35.263 190 85 6 5 159 231 417 1.35e-18 83.2
MsG0880041852.01.T01 MTR_8g059425 33.523 176 90 6 5 158 286 456 1.57e-18 83.2
MsG0880041852.01.T01 MTR_6g014187 33.889 180 92 6 5 162 288 462 2.13e-18 82.8
MsG0880041852.01.T01 MTR_6g014150 33.511 188 93 7 5 170 285 462 2.42e-18 82.8
MsG0880041852.01.T01 MTR_7g055710 33.505 194 95 5 5 164 275 468 2.50e-18 82.4
MsG0880041852.01.T01 MTR_4g094920 29.442 197 106 6 2 166 271 466 2.54e-18 82.4
MsG0880041852.01.T01 MTR_6g014290 31.383 188 97 7 5 170 286 463 2.56e-18 82.4
MsG0880041852.01.T01 MTR_4g485640 32.308 195 97 6 5 164 457 651 3.32e-18 82.4
MsG0880041852.01.T01 MTR_6g014170 32.308 195 101 7 5 177 270 455 3.50e-18 82.0
MsG0880041852.01.T01 MTR_8g071070 33.333 186 93 5 5 161 269 452 3.69e-18 82.0
MsG0880041852.01.T01 MTR_6g014250 32.222 180 95 6 5 162 286 460 3.87e-18 82.0
MsG0880041852.01.T01 MTR_0078s0200 70.370 54 15 1 5 57 259 312 4.16e-18 80.9
MsG0880041852.01.T01 MTR_7g071040 31.443 194 99 4 5 164 282 475 5.09e-18 81.6
MsG0880041852.01.T01 MTR_5g464760 33.523 176 86 7 5 155 288 457 5.60e-18 81.6
MsG0880041852.01.T01 MTR_8g044140 33.846 195 87 7 5 161 240 430 7.08e-18 81.3
MsG0880041852.01.T01 MTR_6g014240 31.667 180 96 5 5 162 255 429 8.96e-18 80.9
MsG0880041852.01.T01 MTR_5g035580 34.118 170 87 4 5 153 262 427 1.13e-17 80.5
MsG0880041852.01.T01 MTR_7g070910 32.653 196 94 6 5 164 276 469 1.24e-17 80.5
MsG0880041852.01.T01 MTR_7g013260 34.104 173 90 8 5 156 251 420 1.37e-17 80.5
MsG0880041852.01.T01 MTR_6g014220 31.795 195 102 7 5 177 286 471 1.84e-17 80.1
MsG0880041852.01.T01 MTR_3g031400 30.337 178 104 6 5 164 259 434 2.27e-17 79.7
MsG0880041852.01.T01 MTR_6g014020 32.222 180 95 6 5 162 288 462 2.69e-17 79.7
MsG0880041852.01.T01 MTR_6g013920 32.558 172 89 6 5 154 287 453 3.20e-17 79.3
MsG0880041852.01.T01 MTR_7g011470 30.220 182 98 6 5 163 270 445 3.59e-17 79.3
MsG0880041852.01.T01 MTR_7g102490 30.769 195 101 6 4 164 277 471 3.62e-17 79.3
MsG0880041852.01.T01 MTR_7g011470 30.220 182 98 6 5 163 274 449 3.62e-17 79.3
MsG0880041852.01.T01 MTR_8g006230 69.091 55 16 1 7 60 201 255 3.67e-17 77.8
MsG0880041852.01.T01 MTR_7g080900 32.911 158 86 6 4 143 263 418 4.05e-17 79.0
MsG0880041852.01.T01 MTR_5g464810 32.796 186 82 7 5 159 286 459 4.08e-17 79.0
MsG0880041852.01.T01 MTR_5g064240 32.796 186 82 7 5 159 286 459 4.08e-17 79.0
MsG0880041852.01.T01 MTR_5g058320 31.282 195 103 7 5 177 273 458 5.46e-17 78.6
MsG0880041852.01.T01 MTR_6g035265 30.435 207 90 7 5 164 259 458 6.03e-17 78.6
MsG0880041852.01.T01 MTR_7g080950 31.720 186 99 8 5 165 257 439 6.38e-17 78.6
MsG0880041852.01.T01 MTR_6g014270 32.447 188 95 7 5 170 287 464 7.98e-17 78.2
MsG0880041852.01.T01 MTR_6g014040 32.955 176 91 5 5 158 289 459 9.04e-17 78.2
MsG0880041852.01.T01 MTR_7g102460 31.795 195 99 6 4 164 275 469 1.02e-16 77.8
MsG0880041852.01.T01 MTR_7g102550 31.606 193 86 7 8 158 279 467 1.14e-16 77.8
MsG0880041852.01.T01 MTR_6g013960 31.915 188 96 7 5 170 288 465 1.31e-16 77.8
MsG0880041852.01.T01 MTR_3g009490 33.544 158 67 3 30 150 3 159 1.36e-16 74.7
MsG0880041852.01.T01 MTR_6g013900 31.977 172 90 6 5 154 287 453 1.39e-16 77.4
MsG0880041852.01.T01 MTR_6g013450 30.769 195 104 6 5 177 289 474 1.41e-16 77.4
MsG0880041852.01.T01 MTR_8g083290 35.227 176 89 7 5 155 267 442 1.47e-16 77.4
MsG0880041852.01.T01 MTR_0288s0020 29.082 196 106 6 5 177 269 454 1.75e-16 77.4
MsG0880041852.01.T01 MTR_0477s0010 28.571 196 107 7 5 177 125 310 2.60e-16 75.9
MsG0880041852.01.T01 MTR_0184s0010 50.746 67 32 1 88 154 4 69 2.76e-16 71.6
MsG0880041852.01.T01 MTR_7g013180 33.333 186 95 8 5 170 258 434 2.85e-16 76.6
MsG0880041852.01.T01 MTR_6g014190 33.140 172 88 6 5 154 95 261 3.00e-16 75.5
MsG0880041852.01.T01 MTR_8g007585 31.795 195 102 7 5 177 200 385 3.70e-16 76.3
MsG0880041852.01.T01 MTR_3g479490 30.357 168 89 5 6 150 282 444 4.24e-16 76.3
MsG0880041852.01.T01 MTR_3g069710 31.937 191 101 7 5 171 258 443 5.42e-16 75.9
MsG0880041852.01.T01 MTR_5g031830 33.129 163 69 5 5 139 281 431 5.47e-16 75.9
MsG0880041852.01.T01 MTR_7g070930 36.029 136 62 2 5 115 279 414 7.57e-16 75.5
MsG0880041852.01.T01 MTR_5g031860 34.356 163 67 5 5 139 280 430 8.17e-16 75.5
MsG0880041852.01.T01 MTR_6g014310 31.915 188 96 7 5 170 289 466 8.27e-16 75.5
MsG0880041852.01.T01 MTR_5g090600 29.609 179 92 6 5 155 257 429 8.31e-16 75.1
MsG0880041852.01.T01 MTR_5g040030 31.795 195 91 6 5 161 279 469 8.66e-16 75.1
MsG0880041852.01.T01 MTR_6g014200 30.851 188 98 6 5 170 285 462 1.03e-15 75.1
MsG0880041852.01.T01 MTR_5g031840 33.742 163 68 5 5 139 272 422 1.17e-15 74.7
MsG0880041852.01.T01 MTR_5g075440 31.214 173 95 6 3 154 261 430 1.28e-15 74.7
MsG0880041852.01.T01 MTR_8g083280 32.927 164 89 5 5 149 270 431 1.48e-15 74.7
MsG0880041852.01.T01 MTR_8g043470 32.184 174 91 6 5 156 186 354 1.98e-15 73.9
MsG0880041852.01.T01 MTR_5g039900 32.124 193 91 7 5 161 277 465 2.27e-15 73.9
MsG0880041852.01.T01 MTR_3g084520 32.292 192 94 8 5 164 270 457 2.56e-15 73.9
MsG0880041852.01.T01 MTR_3g031450 29.775 178 105 7 5 164 261 436 2.81e-15 73.9
MsG0880041852.01.T01 MTR_0891s0010 27.624 181 103 5 5 162 97 272 3.43e-15 72.8
MsG0880041852.01.T01 MTR_3g084540 30.000 190 102 5 5 164 270 458 3.66e-15 73.6
MsG0880041852.01.T01 MTR_1g107365 27.950 161 100 5 5 150 303 462 6.95e-15 72.8
MsG0880041852.01.T01 MTR_6g011340 33.523 176 90 6 5 158 288 458 8.68e-15 72.4
MsG0880041852.01.T01 MTR_5g072810 30.636 173 96 7 5 156 261 430 2.36e-14 70.9
MsG0880041852.01.T01 MTR_7g080960 34.328 134 73 5 5 137 325 444 2.76e-14 70.9
MsG0880041852.01.T01 MTR_7g102560 30.412 194 85 8 5 155 273 459 2.96e-14 70.9
MsG0880041852.01.T01 MTR_3g084530 30.857 175 89 6 5 149 270 442 6.19e-14 69.7
MsG0880041852.01.T01 MTR_6g035295 30.319 188 90 7 5 155 277 460 7.21e-14 69.7
MsG0880041852.01.T01 MTR_3g479470 29.936 157 83 5 5 139 288 439 1.38e-13 68.9
MsG0880041852.01.T01 MTR_3g069690 29.670 182 98 7 5 161 255 431 7.21e-13 66.6
MsG0880041852.01.T01 MTR_6g014300 26.347 167 95 4 19 163 289 449 1.02e-12 66.2
MsG0880041852.01.T01 MTR_7g070760 39.831 118 58 5 5 116 90 200 1.66e-12 63.9
MsG0880041852.01.T01 MTR_1g032490 27.879 165 94 4 5 144 271 435 3.29e-12 64.7
MsG0880041852.01.T01 MTR_1g107375 27.841 176 108 6 5 163 264 437 4.34e-12 64.3
MsG0880041852.01.T01 MTR_1g090270 28.000 175 98 5 6 153 262 435 2.23e-11 62.4
MsG0880041852.01.T01 MTR_5g072830 28.814 177 104 7 5 161 256 430 7.48e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041852.01.T01 AT4G01070 44.444 189 69 5 5 158 259 446 9.44e-43 149
MsG0880041852.01.T01 AT1G01420 43.915 189 69 6 5 158 259 445 1.64e-38 138
MsG0880041852.01.T01 AT1G01420 43.915 189 69 6 5 158 262 448 1.85e-38 138
MsG0880041852.01.T01 AT4G36770 38.725 204 86 6 5 171 254 455 1.98e-35 129
MsG0880041852.01.T01 AT1G01390 44.681 188 68 5 5 157 259 445 5.96e-35 129
MsG0880041852.01.T01 AT1G01390 44.681 188 68 5 5 157 276 462 7.86e-35 128
MsG0880041852.01.T01 AT3G50740 40.909 198 78 4 5 163 259 456 9.45e-34 125
MsG0880041852.01.T01 AT5G26310 38.265 196 80 5 7 163 256 449 3.14e-32 121
MsG0880041852.01.T01 AT5G66690 38.889 198 80 5 5 163 254 449 2.82e-30 116
MsG0880041852.01.T01 AT2G18570 38.191 199 77 4 7 165 260 452 2.00e-28 110
MsG0880041852.01.T01 AT2G18560 36.000 200 78 5 4 161 167 358 9.96e-27 105
MsG0880041852.01.T01 AT1G07260 35.359 181 88 6 5 158 272 450 3.39e-23 96.3
MsG0880041852.01.T01 AT5G14860 36.066 183 95 5 3 164 278 459 6.58e-23 95.9
MsG0880041852.01.T01 AT2G16890 36.702 188 86 6 5 164 269 451 6.68e-23 95.5
MsG0880041852.01.T01 AT3G16520 33.679 193 88 7 5 165 261 445 1.51e-22 94.4
MsG0880041852.01.T01 AT3G16520 33.679 193 88 7 5 165 261 445 1.68e-22 94.4
MsG0880041852.01.T01 AT3G16520 33.679 193 88 7 5 165 261 445 1.70e-22 94.4
MsG0880041852.01.T01 AT2G43820 37.209 172 79 7 5 153 255 420 4.91e-22 93.2
MsG0880041852.01.T01 AT2G31790 32.222 180 101 4 5 164 263 441 1.89e-21 91.3
MsG0880041852.01.T01 AT2G15490 32.474 194 93 5 5 164 276 465 1.17e-20 89.4
MsG0880041852.01.T01 AT2G31750 36.464 181 92 7 5 164 261 439 1.62e-20 89.0
MsG0880041852.01.T01 AT2G31750 36.464 181 92 7 5 164 261 439 1.94e-20 88.6
MsG0880041852.01.T01 AT2G43840 34.759 187 91 7 7 165 257 440 2.22e-20 88.2
MsG0880041852.01.T01 AT2G43840 34.759 187 91 7 7 165 257 440 2.27e-20 88.2
MsG0880041852.01.T01 AT2G15490 32.086 187 100 5 5 164 276 462 2.35e-20 88.6
MsG0880041852.01.T01 AT1G05675 37.640 178 92 6 5 164 261 437 2.75e-20 88.2
MsG0880041852.01.T01 AT1G05680 36.464 181 90 6 5 164 261 437 3.24e-20 87.8
MsG0880041852.01.T01 AT1G22340 33.503 197 98 6 5 177 288 475 4.62e-20 87.4
MsG0880041852.01.T01 AT1G07250 33.333 183 91 6 7 161 275 454 5.29e-20 87.4
MsG0880041852.01.T01 AT1G10400 35.196 179 96 4 5 164 269 446 8.82e-20 86.7
MsG0880041852.01.T01 AT2G30140 32.609 184 102 7 5 167 260 442 2.23e-19 85.5
MsG0880041852.01.T01 AT2G30140 32.609 184 102 7 5 167 259 441 2.33e-19 85.5
MsG0880041852.01.T01 AT1G22400 34.197 193 97 6 5 175 289 473 2.70e-19 85.5
MsG0880041852.01.T01 AT1G22360 36.111 180 88 5 5 162 285 459 9.43e-19 84.0
MsG0880041852.01.T01 AT2G23260 31.250 176 102 3 5 161 260 435 1.34e-18 83.2
MsG0880041852.01.T01 AT4G01070 59.420 69 26 2 5 71 259 327 5.28e-18 80.9
MsG0880041852.01.T01 AT2G23250 30.000 180 107 3 3 163 240 419 5.56e-18 81.6
MsG0880041852.01.T01 AT2G16890 37.267 161 68 6 5 137 269 424 8.15e-18 80.9
MsG0880041852.01.T01 AT1G22380 35.556 180 89 5 5 162 288 462 2.53e-17 79.7
MsG0880041852.01.T01 AT2G29730 30.939 181 101 5 5 162 266 445 2.59e-17 79.7
MsG0880041852.01.T01 AT1G24100 33.143 175 96 4 5 158 266 440 3.47e-16 76.3
MsG0880041852.01.T01 AT2G36970 31.977 172 89 6 7 154 278 445 5.50e-16 75.9
MsG0880041852.01.T01 AT3G21560 29.518 166 96 4 5 149 277 442 7.38e-16 75.5
MsG0880041852.01.T01 AT3G02100 34.911 169 83 7 5 154 277 437 9.29e-16 75.1
MsG0880041852.01.T01 AT1G22360 35.976 164 80 5 5 143 285 448 3.25e-15 73.6
MsG0880041852.01.T01 AT1G22370 34.759 187 81 5 5 162 113 287 2.08e-14 70.5
MsG0880041852.01.T01 AT5G05880 30.457 197 102 7 7 175 257 446 3.06e-14 70.9
MsG0880041852.01.T01 AT2G30150 31.953 169 96 7 5 155 245 412 3.42e-14 70.5
MsG0880041852.01.T01 AT2G30150 31.953 169 96 7 5 155 261 428 4.07e-14 70.5
MsG0880041852.01.T01 AT1G22370 34.759 187 81 5 5 162 283 457 5.76e-14 70.1
MsG0880041852.01.T01 AT1G05560 28.814 177 94 5 7 153 301 475 3.95e-13 67.8
MsG0880041852.01.T01 AT1G05560 28.814 177 94 5 7 153 251 425 4.64e-13 67.4
MsG0880041852.01.T01 AT4G14090 27.607 163 95 6 6 146 260 421 7.66e-13 66.6
MsG0880041852.01.T01 AT4G15500 27.811 169 101 4 5 152 267 435 1.64e-12 65.9
MsG0880041852.01.T01 AT4G15490 27.624 181 110 4 5 164 271 451 2.77e-12 65.1
MsG0880041852.01.T01 AT5G54010 29.878 164 90 5 6 145 249 411 7.55e-12 63.9
MsG0880041852.01.T01 AT5G05900 29.121 182 103 6 7 168 263 438 1.06e-11 63.5
MsG0880041852.01.T01 AT1G51210 33.582 134 59 5 5 115 269 395 1.07e-11 63.2
MsG0880041852.01.T01 AT5G05890 29.348 184 101 6 7 166 261 439 3.11e-11 62.0
MsG0880041852.01.T01 AT5G53990 27.513 189 106 7 3 162 241 427 3.87e-11 61.6
MsG0880041852.01.T01 AT3G46660 28.736 174 87 5 5 150 262 426 5.61e-11 61.2
MsG0880041852.01.T01 AT3G29630 26.842 190 109 6 3 163 243 431 9.72e-11 60.5

Find 44 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAACACTTTCAATGATT+TGG 0.223134 8:+236948 None:intergenic
GGTGTTCTTTATGTATGTTT+TGG 0.261050 8:+237105 MsG0880041852.01.T01:CDS
CAACTCAATGAGTTAGCATT+TGG 0.306842 8:+237153 MsG0880041852.01.T01:CDS
ACTTTGGAGAGTGTGGTTAA+TGG 0.345363 8:+237403 MsG0880041852.01.T01:CDS
AATGCAGATCCTAAGGAATA+TGG 0.348952 8:+237791 MsG0880041852.01.T01:CDS
AATAGAGGCCACGCAATCAT+AGG 0.415417 8:-237430 None:intergenic
ATCCTTTGTTCTGCAAATAG+AGG 0.418095 8:-237445 None:intergenic
GCAGAGTTAACAGCTTTACT+TGG 0.420196 8:-237219 None:intergenic
AATCTGTATCCGAACAGAAA+TGG 0.434738 8:-237838 None:intergenic
CCGAAGATTGATGATGAAAG+TGG 0.440742 8:+237511 MsG0880041852.01.T01:CDS
GCTGTTGCAACAAGTGAAAA+TGG 0.443145 8:+237637 MsG0880041852.01.T01:CDS
CCACTTTCATCATCAATCTT+CGG 0.444906 8:-237511 None:intergenic
AAGAAGTTGCTAACTGTGTA+AGG 0.451651 8:+237548 MsG0880041852.01.T01:CDS
ATTGTGGTTGGGTTCAACTT+TGG 0.458881 8:+237387 MsG0880041852.01.T01:CDS
AGATAGTTTCCATTTCTGTT+CGG 0.479441 8:+237829 MsG0880041852.01.T01:CDS
CATGGAAGGTGATGAAAGCT+TGG 0.494784 8:+237576 MsG0880041852.01.T01:CDS
TCCGTTAGAGTATTGCCAAA+TGG 0.502024 8:+237266 MsG0880041852.01.T01:CDS
GGGTTCAACTTTGGAGAGTG+TGG 0.511321 8:+237396 MsG0880041852.01.T01:CDS
GTCCATGCTCCATATTCCTT+AGG 0.513763 8:-237800 None:intergenic
GATTCTGAATGCAGATCCTA+AGG 0.521986 8:+237784 MsG0880041852.01.T01:CDS
ATACAGATTTGCTCGGATGA+TGG 0.528440 8:+237852 MsG0880041852.01.T01:CDS
TGTTCGGATACAGATTTGCT+CGG 0.530297 8:+237845 MsG0880041852.01.T01:CDS
GGAAATACAAAAGAGAATCA+AGG 0.536941 8:+237597 MsG0880041852.01.T01:CDS
TACTTGTAAGCAATAAAACC+TGG 0.543638 8:+237755 MsG0880041852.01.T01:intron
GAGTGGCAAGAAATTCTTGT+GGG 0.556381 8:+237185 MsG0880041852.01.T01:CDS
GAAATGGAAACTATCTTGAA+AGG 0.566242 8:-237822 None:intergenic
GCATTCAGAATCTTGAAACC+AGG 0.583157 8:-237773 None:intergenic
GCATTTGGATTAGAATTGAG+TGG 0.583901 8:+237168 MsG0880041852.01.T01:CDS
AGAATCAAGGAATTGAGTGT+TGG 0.586449 8:+237610 MsG0880041852.01.T01:CDS
ATTATTGACAGATGAGCTCA+AGG 0.593411 8:+237477 MsG0880041852.01.T01:CDS
ATCCTAAGGAATATGGAGCA+TGG 0.593848 8:+237798 MsG0880041852.01.T01:CDS
TTTCAATGATTTGGAACCTG+AGG 0.594195 8:+236957 None:intergenic
ACCATTTGGCAATACTCTAA+CGG 0.597143 8:-237267 None:intergenic
GGCCTCTATTTGCAGAACAA+AGG 0.622122 8:+237443 MsG0880041852.01.T01:CDS
CGAAGATTGATGATGAAAGT+GGG 0.623137 8:+237512 MsG0880041852.01.T01:CDS
AAACATACATAAAGAACACC+TGG 0.637115 8:-237102 None:intergenic
TGGTTGGAAAATCAACCACC+AGG 0.646564 8:+237084 MsG0880041852.01.T01:CDS
TAACTGTGTAAGGAGAATCA+TGG 0.649948 8:+237558 MsG0880041852.01.T01:CDS
ATGGTGTTCCTATGATTGCG+TGG 0.650757 8:+237422 MsG0880041852.01.T01:CDS
TGTGTAAGGAGAATCATGGA+AGG 0.676421 8:+237562 MsG0880041852.01.T01:CDS
TGAGTGGCAAGAAATTCTTG+TGG 0.685840 8:+237184 MsG0880041852.01.T01:CDS
ATGAGCTCAAGGTGGCTGTG+AGG 0.692118 8:+237488 MsG0880041852.01.T01:CDS
CATACATAAAGAACACCTGG+TGG 0.742332 8:-237099 None:intergenic
ATTGACAGATGAGCTCAAGG+TGG 0.752715 8:+237480 MsG0880041852.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTAATTCAATGTTTTA+AGG + Chr8:237061-237080 MsG0880041852.01.T01:intron 15.0%
!!! ATTAATTCAATGTTTTAAGG+TGG + Chr8:237064-237083 MsG0880041852.01.T01:intron 20.0%
!!! TGACTAATTTTGTTGTATTA+TGG + Chr8:237729-237748 MsG0880041852.01.T01:intron 20.0%
! AATAGACTCATTTCTGTTAA+GGG - Chr8:237033-237052 None:intergenic 25.0%
!! GTGTTCTTTATGTATGTTTT+GGG + Chr8:237106-237125 MsG0880041852.01.T01:CDS 25.0%
AAACATACATAAAGAACACC+TGG - Chr8:237105-237124 None:intergenic 30.0%
AAGAAACAGAGAAAATGGAT+TGG + Chr8:237298-237317 MsG0880041852.01.T01:intron 30.0%
AGATAGTTTCCATTTCTGTT+CGG + Chr8:237829-237848 MsG0880041852.01.T01:CDS 30.0%
ATAGACTCATTTCTGTTAAG+GGG - Chr8:237032-237051 None:intergenic 30.0%
CAATAGACTCATTTCTGTTA+AGG - Chr8:237034-237053 None:intergenic 30.0%
GAAATGGAAACTATCTTGAA+AGG - Chr8:237825-237844 None:intergenic 30.0%
GGAAATACAAAAGAGAATCA+AGG + Chr8:237597-237616 MsG0880041852.01.T01:CDS 30.0%
TACTTGTAAGCAATAAAACC+TGG + Chr8:237755-237774 MsG0880041852.01.T01:intron 30.0%
TGAAAATGGTTCATCTAAGA+AGG + Chr8:237651-237670 MsG0880041852.01.T01:intron 30.0%
TTGGAAAGAAACAGAGAAAA+TGG + Chr8:237293-237312 MsG0880041852.01.T01:intron 30.0%
TTTCTTTCCAAGAAACCATT+TGG - Chr8:237284-237303 None:intergenic 30.0%
! GGTGTTCTTTATGTATGTTT+TGG + Chr8:237105-237124 MsG0880041852.01.T01:CDS 30.0%
!!! AAACCTTGTTTTTATCCAGT+GGG + Chr8:237005-237024 MsG0880041852.01.T01:intron 30.0%
!!! ATTCAATGTTTTAAGGTGGT+TGG + Chr8:237068-237087 MsG0880041852.01.T01:intron 30.0%
!!! GTTAACTCTGCTTATTTTGT+TGG + Chr8:237231-237250 MsG0880041852.01.T01:CDS 30.0%
!!! TTTTTTGAGTCATTGTGGTT+GGG + Chr8:237376-237395 MsG0880041852.01.T01:intron 30.0%
AAGAAGTTGCTAACTGTGTA+AGG + Chr8:237548-237567 MsG0880041852.01.T01:CDS 35.0%
AATCTGTATCCGAACAGAAA+TGG - Chr8:237841-237860 None:intergenic 35.0%
AATGCAGATCCTAAGGAATA+TGG + Chr8:237791-237810 MsG0880041852.01.T01:CDS 35.0%
ACCATTTGGCAATACTCTAA+CGG - Chr8:237270-237289 None:intergenic 35.0%
AGAATCAAGGAATTGAGTGT+TGG + Chr8:237610-237629 MsG0880041852.01.T01:CDS 35.0%
AGTATTGCCAAATGGTTTCT+TGG + Chr8:237274-237293 MsG0880041852.01.T01:intron 35.0%
ATCCTTTGTTCTGCAAATAG+AGG - Chr8:237448-237467 None:intergenic 35.0%
ATTATTGACAGATGAGCTCA+AGG + Chr8:237477-237496 MsG0880041852.01.T01:CDS 35.0%
ATTCTTGGTCATGGTTCAAT+TGG + Chr8:237350-237369 MsG0880041852.01.T01:intron 35.0%
CAACTCAATGAGTTAGCATT+TGG + Chr8:237153-237172 MsG0880041852.01.T01:CDS 35.0%
CCACTTTCATCATCAATCTT+CGG - Chr8:237514-237533 None:intergenic 35.0%
TAACTGTGTAAGGAGAATCA+TGG + Chr8:237558-237577 MsG0880041852.01.T01:CDS 35.0%
! ATTTGGAACCTGAGGTTATA+AGG + Chr8:236965-236984 MsG0880041852.01.T01:intron 35.0%
! GCATTTGGATTAGAATTGAG+TGG + Chr8:237168-237187 MsG0880041852.01.T01:CDS 35.0%
!! CGAAGATTGATGATGAAAGT+GGG + Chr8:237512-237531 MsG0880041852.01.T01:CDS 35.0%
!!! CTTTATGTATGTTTTGGGAG+TGG + Chr8:237111-237130 MsG0880041852.01.T01:CDS 35.0%
!!! GAAACCTTGTTTTTATCCAG+TGG + Chr8:237004-237023 MsG0880041852.01.T01:intron 35.0%
!!! GTTTTTTGAGTCATTGTGGT+TGG + Chr8:237375-237394 MsG0880041852.01.T01:intron 35.0%
ATCCTAAGGAATATGGAGCA+TGG + Chr8:237798-237817 MsG0880041852.01.T01:CDS 40.0%
ATGCAATCTCGATGCTAAAG+AGG - Chr8:237683-237702 None:intergenic 40.0%
ATTGTGGTTGGGTTCAACTT+TGG + Chr8:237387-237406 MsG0880041852.01.T01:CDS 40.0%
CATACATAAAGAACACCTGG+TGG - Chr8:237102-237121 None:intergenic 40.0%
GAGTGGCAAGAAATTCTTGT+GGG + Chr8:237185-237204 MsG0880041852.01.T01:CDS 40.0%
GATTCTGAATGCAGATCCTA+AGG + Chr8:237784-237803 MsG0880041852.01.T01:CDS 40.0%
GCAGAGTTAACAGCTTTACT+TGG - Chr8:237222-237241 None:intergenic 40.0%
GCATTCAGAATCTTGAAACC+AGG - Chr8:237776-237795 None:intergenic 40.0%
GCTGTTGCAACAAGTGAAAA+TGG + Chr8:237637-237656 MsG0880041852.01.T01:CDS 40.0%
TGACCAAGAATCTCAACTTG+TGG - Chr8:237341-237360 None:intergenic 40.0%
TGAGTGGCAAGAAATTCTTG+TGG + Chr8:237184-237203 MsG0880041852.01.T01:CDS 40.0%
TGTGTAAGGAGAATCATGGA+AGG + Chr8:237562-237581 MsG0880041852.01.T01:CDS 40.0%
! ACTTTGGAGAGTGTGGTTAA+TGG + Chr8:237403-237422 MsG0880041852.01.T01:CDS 40.0%
! CAAGTTGAGATTCTTGGTCA+TGG + Chr8:237341-237360 MsG0880041852.01.T01:intron 40.0%
! TGAAGAAGCCTTATAACCTC+AGG - Chr8:236976-236995 None:intergenic 40.0%
! TGTTCGGATACAGATTTGCT+CGG + Chr8:237845-237864 MsG0880041852.01.T01:CDS 40.0%
!! ATGGATTGGTTGTTCCATCA+TGG + Chr8:237312-237331 MsG0880041852.01.T01:intron 40.0%
!! CCGAAGATTGATGATGAAAG+TGG + Chr8:237511-237530 MsG0880041852.01.T01:CDS 40.0%
!! TCCGTTAGAGTATTGCCAAA+TGG + Chr8:237266-237285 MsG0880041852.01.T01:CDS 40.0%
!! TGGATTGGTTGTTCCATCAT+GGG + Chr8:237313-237332 MsG0880041852.01.T01:intron 40.0%
!!! GGTGGTTTTTTGAGTCATTG+TGG + Chr8:237371-237390 MsG0880041852.01.T01:intron 40.0%
!!! TATGTATGTTTTGGGAGTGG+TGG + Chr8:237114-237133 MsG0880041852.01.T01:CDS 40.0%
AATAGAGGCCACGCAATCAT+AGG - Chr8:237433-237452 None:intergenic 45.0%
ATGGTGTTCCTATGATTGCG+TGG + Chr8:237422-237441 MsG0880041852.01.T01:CDS 45.0%
ATTGACAGATGAGCTCAAGG+TGG + Chr8:237480-237499 MsG0880041852.01.T01:CDS 45.0%
CATGGAAGGTGATGAAAGCT+TGG + Chr8:237576-237595 MsG0880041852.01.T01:CDS 45.0%
CTTGGTCATGGTTCAATTGG+TGG + Chr8:237353-237372 MsG0880041852.01.T01:intron 45.0%
GGCCTCTATTTGCAGAACAA+AGG + Chr8:237443-237462 MsG0880041852.01.T01:CDS 45.0%
GGTCCCACTGGATAAAAACA+AGG - Chr8:237011-237030 None:intergenic 45.0%
GTCCATGCTCCATATTCCTT+AGG - Chr8:237803-237822 None:intergenic 45.0%
TGGTTGGAAAATCAACCACC+AGG + Chr8:237084-237103 MsG0880041852.01.T01:CDS 45.0%
! GCACCACAAGTTGAGATTCT+TGG + Chr8:237335-237354 MsG0880041852.01.T01:intron 45.0%
TCAACTTGTGGTGCCCATGA+TGG - Chr8:237329-237348 None:intergenic 50.0%
TTTCTGTTAAGGGGTCCCAC+TGG - Chr8:237023-237042 None:intergenic 50.0%
! GGGTTCAACTTTGGAGAGTG+TGG + Chr8:237396-237415 MsG0880041852.01.T01:CDS 50.0%
ATGAGCTCAAGGTGGCTGTG+AGG + Chr8:237488-237507 MsG0880041852.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 236962 237871 236962 ID=MsG0880041852.01;Name=MsG0880041852.01
Chr8 mRNA 236962 237871 236962 ID=MsG0880041852.01.T01;Parent=MsG0880041852.01;Name=MsG0880041852.01.T01;_AED=0.49;_eAED=0.59;_QI=0|0|0|1|1|1|4|0|200
Chr8 exon 236962 236978 236962 ID=MsG0880041852.01.T01:exon:310;Parent=MsG0880041852.01.T01
Chr8 exon 237083 237287 237083 ID=MsG0880041852.01.T01:exon:309;Parent=MsG0880041852.01.T01
Chr8 exon 237385 237658 237385 ID=MsG0880041852.01.T01:exon:308;Parent=MsG0880041852.01.T01
Chr8 exon 237765 237871 237765 ID=MsG0880041852.01.T01:exon:307;Parent=MsG0880041852.01.T01
Chr8 CDS 236962 236978 236962 ID=MsG0880041852.01.T01:cds;Parent=MsG0880041852.01.T01
Chr8 CDS 237083 237287 237083 ID=MsG0880041852.01.T01:cds;Parent=MsG0880041852.01.T01
Chr8 CDS 237385 237658 237385 ID=MsG0880041852.01.T01:cds;Parent=MsG0880041852.01.T01
Chr8 CDS 237765 237871 237765 ID=MsG0880041852.01.T01:cds;Parent=MsG0880041852.01.T01
Gene Sequence

>MsG0880041852.01.T01

ATGATTTGGAACCTGAGGTGGTTGGAAAATCAACCACCAGGTGTTCTTTATGTATGTTTTGGGAGTGGTGGAACAGTTTCTCATGAACAACTCAATGAGTTAGCATTTGGATTAGAATTGAGTGGCAAGAAATTCTTGTGGGTTGTGAGAGTTCCAAGTAAAGCTGTTAACTCTGCTTATTTTGTTGGAGCAAAAGATGATCCGTTAGAGTATTGCCAAATGTCATTGTGGTTGGGTTCAACTTTGGAGAGTGTGGTTAATGGTGTTCCTATGATTGCGTGGCCTCTATTTGCAGAACAAAGGATGAATGCAAAATTATTGACAGATGAGCTCAAGGTGGCTGTGAGGCCGAAGATTGATGATGAAAGTGGGATAGTGAAAAGAGAAGAAGTTGCTAACTGTGTAAGGAGAATCATGGAAGGTGATGAAAGCTTGGAAATACAAAAGAGAATCAAGGAATTGAGTGTTGGTGCTGCTGTTGCAACAAGTGAAAATGCAATAAAACCTGGTTTCAAGATTCTGAATGCAGATCCTAAGGAATATGGAGCATGGACCTTTCAAGATAGTTTCCATTTCTGTTCGGATACAGATTTGCTCGGATGA

Protein sequence

>MsG0880041852.01.T01

MIWNLRWLENQPPGVLYVCFGSGGTVSHEQLNELAFGLELSGKKFLWVVRVPSKAVNSAYFVGAKDDPLEYCQMSLWLGSTLESVVNGVPMIAWPLFAEQRMNAKLLTDELKVAVRPKIDDESGIVKREEVANCVRRIMEGDESLEIQKRIKELSVGAAVATSENAIKPGFKILNADPKEYGAWTFQDSFHFCSDTDLLG*