AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017451.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017451.01.T01 MTR_3g107730 90.244 164 4 1 40 191 511 674 6.47e-99 301
MsG0380017451.01.T01 MTR_1g011840 67.407 135 34 2 40 164 510 644 7.36e-54 182
MsG0380017451.01.T01 MTR_0459s0020 59.690 129 42 2 41 160 529 656 2.87e-44 156
MsG0380017451.01.T01 MTR_0366s0020 59.690 129 42 2 41 160 445 572 2.23e-43 153
MsG0380017451.01.T01 MTR_3g077670 49.180 122 57 2 40 156 527 648 5.78e-31 119
MsG0380017451.01.T01 MTR_7g110000 48.387 124 60 2 40 159 527 650 1.24e-30 119
MsG0380017451.01.T01 MTR_2g032690 44.628 121 63 3 40 156 525 645 1.20e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017451.01.T01 AT4G32510 50.323 155 59 2 40 177 520 673 6.44e-44 155
MsG0380017451.01.T01 AT4G32510 49.045 157 62 2 40 179 520 675 8.12e-43 153
MsG0380017451.01.T01 AT1G15460 53.788 132 53 3 40 164 423 553 2.22e-42 150
MsG0380017451.01.T01 AT1G15460 53.788 132 53 3 40 164 529 659 6.26e-42 150
MsG0380017451.01.T01 AT1G15460 53.788 132 53 3 40 164 529 659 6.26e-42 150
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 386 516 2.30e-41 147
MsG0380017451.01.T01 AT5G25430 52.593 135 53 2 41 164 522 656 2.85e-41 148
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 423 553 4.28e-41 147
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 497 627 7.83e-41 147
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 497 627 7.83e-41 147
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 529 659 8.52e-41 147
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 529 659 8.52e-41 147
MsG0380017451.01.T01 AT1G74810 53.435 131 55 2 40 164 529 659 8.52e-41 147
MsG0380017451.01.T01 AT2G47160 47.651 149 72 4 40 183 523 670 2.04e-33 126
MsG0380017451.01.T01 AT2G47160 47.651 149 72 4 40 183 548 695 2.46e-33 126
MsG0380017451.01.T01 AT3G62270 46.309 149 75 3 40 183 523 671 3.55e-33 126
MsG0380017451.01.T01 AT1G15460 57.778 90 37 1 40 129 529 617 1.65e-31 121
MsG0380017451.01.T01 AT3G06450 45.082 122 62 2 40 156 522 643 1.00e-29 116
MsG0380017451.01.T01 AT3G06450 45.082 122 62 2 40 156 522 643 1.00e-29 116
MsG0380017451.01.T01 AT3G06450 45.082 122 62 2 40 156 522 643 1.00e-29 116
MsG0380017451.01.T01 AT3G06450 45.082 122 62 2 40 156 522 643 1.00e-29 116

Find 69 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGAAGATGATCTTCTT+TGG 0.301502 3:-96389536 MsG0380017451.01.T01:three_prime_UTR
TGGTTAGGCTTGAATATCTT+TGG 0.316056 3:+96390235 None:intergenic
AATTCATTTGAACTTTGAAA+TGG 0.326120 3:-96389452 MsG0380017451.01.T01:three_prime_UTR
TTACTATGATGCAGAGATAT+TGG 0.337001 3:-96389923 MsG0380017451.01.T01:CDS
GAAAGAGAATAATGGCAAAA+AGG 0.355095 3:-96389491 MsG0380017451.01.T01:three_prime_UTR
GGAACAAGAAAGGATTCAAT+TGG 0.383575 3:-96389515 MsG0380017451.01.T01:three_prime_UTR
GAATACCGGGTTCGATTCCC+AGG 0.395339 3:+96394512 None:intergenic
ATTCAAGCCTAACCATCTTC+AGG 0.402816 3:-96390227 MsG0380017451.01.T01:CDS
GATCTTCTTTGGAACAAGAA+AGG 0.422212 3:-96389525 MsG0380017451.01.T01:three_prime_UTR
ATTCATTTGAACTTTGAAAT+GGG 0.423981 3:-96389451 MsG0380017451.01.T01:three_prime_UTR
TTCTGAGTATGAGGAATTAT+CGG 0.425690 3:-96390194 MsG0380017451.01.T01:intron
TGGGTTTCAAATATATTAGT+AGG 0.427061 3:-96389432 MsG0380017451.01.T01:three_prime_UTR
TTTATGTACCTGGGGAATAC+CGG 0.432052 3:+96394498 None:intergenic
CATTGAAATATTGAGATCAA+TGG 0.443791 3:-96389402 MsG0380017451.01.T01:three_prime_UTR
TGGATGAGATGACAACCAAC+AGG 0.447214 3:-96389903 MsG0380017451.01.T01:CDS
TGGTCATTTCCTTCCTAAGT+TGG 0.457818 3:-96389382 MsG0380017451.01.T01:three_prime_UTR
GTGAACTTCATGGCCAACTT+AGG 0.459958 3:+96389369 None:intergenic
AGATACACATGCCTCATTTG+TGG 0.466869 3:-96390407 MsG0380017451.01.T01:CDS
ACTTGATGCTTCTGAGTATG+AGG 0.470967 3:-96390203 MsG0380017451.01.T01:CDS
AGAATTATGAGAAGGAAGAA+TGG 0.475173 3:+96390274 None:intergenic
ATCCATTGGTATACCGCCAT+TGG 0.477208 3:+96392116 None:intergenic
CAGAAAATATGCCAACTGTA+AGG 0.487488 3:+96390348 None:intergenic
AATCCAGCTATGGTCTTGAA+TGG 0.492132 3:+96390376 None:intergenic
GTTAGGTTGAGGGGAAAAGA+TGG 0.511735 3:-96389336 MsG0380017451.01.T01:three_prime_UTR
TGTTCTGTTTCGGGGTCACA+TGG 0.513903 3:-96390327 MsG0380017451.01.T01:CDS
AAGCATCAAGTTCCTGAAGA+TGG 0.521659 3:+96390215 None:intergenic
CAATTGGTGAAAGAGAATAA+TGG 0.525184 3:-96389499 MsG0380017451.01.T01:three_prime_UTR
GTACCATTCAAGACCATAGC+TGG 0.525744 3:-96390379 MsG0380017451.01.T01:CDS
TCAAGTTCCTGAAGATGGTT+AGG 0.529736 3:+96390220 None:intergenic
AAGTTTCAACTCTCCCCTGT+TGG 0.535774 3:+96389888 None:intergenic
GTACTAGGGCAGATTTGACC+TGG 0.541341 3:-96389664 MsG0380017451.01.T01:intron
TCTCATTGAAGCTGTTACTG+TGG 0.543152 3:+96389785 None:intergenic
TTATGTACCTGGGGAATACC+GGG 0.543450 3:+96394499 None:intergenic
AATTGTATCATCCTCTGAAG+AGG 0.544738 3:-96389590 MsG0380017451.01.T01:three_prime_UTR
TAGGCTTGAATATCTTTGGA+AGG 0.557117 3:+96390239 None:intergenic
AATCGAACCCGGTATTCCCC+AGG 0.559299 3:-96394506 MsG0380017451.01.T01:intron
TGGATTTACAGCCTTACAGT+TGG 0.564075 3:-96390359 MsG0380017451.01.T01:CDS
CCACGTGATAGTGATAATGA+TGG 0.565884 3:-96389958 MsG0380017451.01.T01:CDS
ATGAGAAGGAAGAATGGTAG+CGG 0.566015 3:+96390280 None:intergenic
AATTGCAATTCCTCCGACGA+AGG 0.567377 3:+96392139 None:intergenic
GATCATTGAAGCTGTTACTG+TGG 0.571270 3:+96389812 None:intergenic
GTGCGTAGAGGCATGCGCAG+TGG 0.574183 3:-96394550 None:intergenic
TGGTACTGTCTCCACAAATG+AGG 0.576656 3:+96390396 None:intergenic
AATATTCAGACAGCACCTCC+AGG 0.578164 3:+96389646 None:intergenic
AAAGATGGTACGAGAGTGAA+AGG 0.579697 3:-96389321 MsG0380017451.01.T01:three_prime_UTR
CGGAGGAATTGCAATTCCAA+TGG 0.585619 3:-96392132 MsG0380017451.01.T01:CDS
AATACCGGGTTCGATTCCCA+GGG 0.588943 3:+96394513 None:intergenic
ACTTCATGGCCAACTTAGGA+AGG 0.593342 3:+96389373 None:intergenic
TAAGGCTGTAAATCCAGCTA+TGG 0.595564 3:+96390366 None:intergenic
TAGTGATAATGATGGAAGCT+CGG 0.596596 3:-96389950 MsG0380017451.01.T01:CDS
GCTTGAATATCTTTGGAAGG+AGG 0.601711 3:+96390242 None:intergenic
AGGCGAGTTCAGCACTCCCA+AGG 0.604329 3:-96392170 MsG0380017451.01.T01:CDS
TTTGAACCACAGGGACTGGT+AGG 0.604416 3:-96392190 MsG0380017451.01.T01:intron
GGAAACAATATTCCACCTAT+CGG 0.607030 3:+96390301 None:intergenic
GATCATTGAAGCTGTTACTG+CGG 0.608964 3:+96389839 None:intergenic
CAAGGTTGAAAATCCTTCGT+CGG 0.611167 3:-96392152 MsG0380017451.01.T01:CDS
GGATGAGATGACAACCAACA+GGG 0.624263 3:-96389902 MsG0380017451.01.T01:CDS
GTTCTCTGAGAATTATGAGA+AGG 0.627074 3:+96390266 None:intergenic
GGTTGAAAATCCTTCGTCGG+AGG 0.639194 3:-96392149 MsG0380017451.01.T01:CDS
GGGGTCACATGGATACCGAT+AGG 0.640094 3:-96390316 MsG0380017451.01.T01:CDS
GTGACAGCAGTCCTCTTCAG+AGG 0.644712 3:+96389579 None:intergenic
GTCACATGGATACCGATAGG+TGG 0.659868 3:-96390313 MsG0380017451.01.T01:CDS
AGGAATTGCAATTCCAATGG+CGG 0.673504 3:-96392129 MsG0380017451.01.T01:intron
CTAGGGCAGATTTGACCTGG+AGG 0.687491 3:-96389661 MsG0380017451.01.T01:intron
GGTACGAGAGTGAAAGGACA+AGG 0.690185 3:-96389315 MsG0380017451.01.T01:three_prime_UTR
CCATCATTATCACTATCACG+TGG 0.692316 3:+96389958 None:intergenic
TACCGGGTTCGATTCCCAGG+GGG 0.708233 3:+96394515 None:intergenic
GATGAGATGACAACCAACAG+GGG 0.715278 3:-96389901 MsG0380017451.01.T01:CDS
ATACCGGGTTCGATTCCCAG+GGG 0.724847 3:+96394514 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATTAAAATAAAATAT+AGG + Chr3:96390402-96390421 None:intergenic 0.0%
!! AAATAAAATATAGGAAATAT+TGG + Chr3:96390393-96390412 None:intergenic 10.0%
!! AATAAAATATAGGAAATATT+GGG + Chr3:96390392-96390411 None:intergenic 10.0%
!!! ATAAATGCTAAAATATATTT+TGG + Chr3:96393664-96393683 None:intergenic 10.0%
!!! TAATTAATGTTTTATTACTA+TGG + Chr3:96390152-96390171 None:intergenic 10.0%
!!! TTGTTTCTAATAATTTTTTA+TGG + Chr3:96389664-96389683 None:intergenic 10.0%
!! AAAAAACTTTATTGGTATTA+TGG + Chr3:96394522-96394541 None:intergenic 15.0%
!! AAATACATTGTGTATTTAAT+TGG - Chr3:96391483-96391502 MsG0380017451.01.T01:intron 15.0%
!! AGTAATTAAAAATGCAAAAA+GGG + Chr3:96390271-96390290 None:intergenic 15.0%
!! ATTCTTTAAATTTCTGTTTA+AGG - Chr3:96391226-96391245 MsG0380017451.01.T01:intron 15.0%
!! TAGTAATTAAAAATGCAAAA+AGG + Chr3:96390272-96390291 None:intergenic 15.0%
!! TTCTTTAAATTTCTGTTTAA+GGG - Chr3:96391227-96391246 MsG0380017451.01.T01:intron 15.0%
!!! ATTGTTTCTAATCATTTTTA+TGG + Chr3:96389729-96389748 None:intergenic 15.0%
!!! ATTGTTTCTAATTTTGTTTA+TGG + Chr3:96389600-96389619 None:intergenic 15.0%
!!! TCTGAATATTACAATTTTTT+AGG - Chr3:96394083-96394102 MsG0380017451.01.T01:intron 15.0%
!! AATGAATCTTAAAACTTAAG+AGG + Chr3:96393989-96394008 None:intergenic 20.0%
!! ATAACATAAATCCAAATTCT+AGG + Chr3:96392415-96392434 None:intergenic 20.0%
!! ATGAATCTTAAAACTTAAGA+GGG + Chr3:96393988-96394007 None:intergenic 20.0%
!! ATTATAACAGGTTAAAGAAT+TGG - Chr3:96392893-96392912 MsG0380017451.01.T01:intron 20.0%
!! CATAAAGTTAATTTACAACT+AGG + Chr3:96389782-96389801 None:intergenic 20.0%
!! CCAAAAAAAAAAATTGCTTA+AGG + Chr3:96391737-96391756 None:intergenic 20.0%
!! CTACATTGAAAAAAAAGTTT+AGG + Chr3:96393231-96393250 None:intergenic 20.0%
!! TAAATGCTATAAACAAGATT+GGG - Chr3:96390807-96390826 MsG0380017451.01.T01:intron 20.0%
!! TAATAATAATGACAGCATAT+TGG - Chr3:96390918-96390937 MsG0380017451.01.T01:intron 20.0%
!! TTAAATGCTATAAACAAGAT+TGG - Chr3:96390806-96390825 MsG0380017451.01.T01:intron 20.0%
!!! AAATAGTTGGTTTTATTGTA+TGG + Chr3:96390364-96390383 None:intergenic 20.0%
!!! AATTCATTTGAACTTTGAAA+TGG - Chr3:96394264-96394283 MsG0380017451.01.T01:intron 20.0%
!!! AGAATTGTTTTTATCATGTT+TGG + Chr3:96389379-96389398 None:intergenic 20.0%
!!! ATTCATTTGAACTTTGAAAT+GGG - Chr3:96394265-96394284 MsG0380017451.01.T01:intron 20.0%
!!! CCTTAAGCAATTTTTTTTTT+TGG - Chr3:96391734-96391753 MsG0380017451.01.T01:intron 20.0%
!!! GTTGGTTTTTAAATTATAAC+AGG - Chr3:96392881-96392900 MsG0380017451.01.T01:intron 20.0%
!!! TGTATAAAAAGAAAGCATTT+TGG + Chr3:96392028-96392047 None:intergenic 20.0%
! AATAGAAAGTGAAAATGAGA+GGG + Chr3:96390126-96390145 None:intergenic 25.0%
! AATATGTAATGTGTAAAGAG+AGG + Chr3:96390651-96390670 None:intergenic 25.0%
! AATGCAAGAATAAAGATCAT+TGG + Chr3:96391791-96391810 None:intergenic 25.0%
! ATAAGTATCTATGTATTCTC+AGG + Chr3:96392981-96393000 None:intergenic 25.0%
! ATATTGGGAATCAAAATAGT+TGG + Chr3:96390377-96390396 None:intergenic 25.0%
! ATCCTCTCAAAAAACTTTAT+TGG + Chr3:96394530-96394549 None:intergenic 25.0%
! ATGTATACAGCAAAAGAAAA+CGG + Chr3:96390439-96390458 None:intergenic 25.0%
! ATTATTCACTCAATTATAGG+TGG - Chr3:96391064-96391083 MsG0380017451.01.T01:intron 25.0%
! CATTGAAATATTGAGATCAA+TGG - Chr3:96394314-96394333 MsG0380017451.01.T01:intron 25.0%
! CTAATATAGTAACAATGAAG+TGG + Chr3:96390626-96390645 None:intergenic 25.0%
! GATCTAATTTATAATAGAGC+AGG + Chr3:96390189-96390208 None:intergenic 25.0%
! GATTGACATAATTATCTCTA+TGG - Chr3:96392455-96392474 MsG0380017451.01.T01:intron 25.0%
! GGAATTATTCACTCAATTAT+AGG - Chr3:96391061-96391080 MsG0380017451.01.T01:intron 25.0%
! GTTAGACTTATATGGATATT+AGG + Chr3:96392184-96392203 None:intergenic 25.0%
! TAAGTGTACATTATAACAGT+TGG + Chr3:96391121-96391140 None:intergenic 25.0%
! TAATAGAAAGTGAAAATGAG+AGG + Chr3:96390127-96390146 None:intergenic 25.0%
! TATAGAGTAGGAAAATGAAA+CGG - Chr3:96389831-96389850 MsG0380017451.01.T01:CDS 25.0%
! TATTCTTGCATTTCAATTCA+GGG - Chr3:96391799-96391818 MsG0380017451.01.T01:intron 25.0%
! TCATTCTTTGTTCATTAACT+CGG + Chr3:96393012-96393031 None:intergenic 25.0%
! TGAATTAAATTACCTAACGA+CGG + Chr3:96390848-96390867 None:intergenic 25.0%
! TGGATCTAACAAGAAATTTA+AGG - Chr3:96389264-96389283 MsG0380017451.01.T01:three_prime_UTR 25.0%
! TGGGTTTCAAATATATTAGT+AGG - Chr3:96394284-96394303 MsG0380017451.01.T01:intron 25.0%
! TTATTCTTGCATTTCAATTC+AGG - Chr3:96391798-96391817 MsG0380017451.01.T01:intron 25.0%
! TTTATTGTATGGAACAAAAG+AGG + Chr3:96390353-96390372 None:intergenic 25.0%
!! ACTCAGAAAAAAGATTTTAG+AGG + Chr3:96389406-96389425 None:intergenic 25.0%
!! ATGTTTTCCTACTTGAATAA+TGG - Chr3:96392370-96392389 MsG0380017451.01.T01:intron 25.0%
!! ATTTTCCTACTCTATATCAA+GGG + Chr3:96389827-96389846 None:intergenic 25.0%
!! CATTTTTCCATATAATCAGA+GGG + Chr3:96392738-96392757 None:intergenic 25.0%
!! TTCTTATTGTTGTTAGAAAG+AGG + Chr3:96391464-96391483 None:intergenic 25.0%
!!! AGTCGTGATCATTTTAATTT+AGG - Chr3:96392153-96392172 MsG0380017451.01.T01:CDS 25.0%
!!! ATTGACACTTTTAAAACAGT+GGG + Chr3:96390495-96390514 None:intergenic 25.0%
!!! TACCAATAAAGTTTTTTGAG+AGG - Chr3:96394525-96394544 MsG0380017451.01.T01:CDS 25.0%
!!! TCCACTTTTACATAAATACA+CGG + Chr3:96389248-96389267 None:intergenic 25.0%
!!! TTTGTTTTCTTCCTAGAATT+TGG - Chr3:96392401-96392420 MsG0380017451.01.T01:intron 25.0%
AAATGAATATCCGAGATTTG+TGG + Chr3:96389881-96389900 None:intergenic 30.0%
AAATTGCTTAAGGTCTAATG+TGG + Chr3:96391727-96391746 None:intergenic 30.0%
AACAAAATTGTTTGAACCAC+AGG - Chr3:96391516-96391535 MsG0380017451.01.T01:intron 30.0%
AACCTAACAATACATACAGT+AGG + Chr3:96392791-96392810 None:intergenic 30.0%
AATGAATATCCGAGATTTGT+GGG + Chr3:96389880-96389899 None:intergenic 30.0%
ACAAAATTGTTTGAACCACA+GGG - Chr3:96391517-96391536 MsG0380017451.01.T01:intron 30.0%
ACAAGGAAAAAAAAAAGACG+GGG - Chr3:96394418-96394437 MsG0380017451.01.T01:intron 30.0%
ACCAAATTCAAATCCTAAGT+TGG + Chr3:96393722-96393741 None:intergenic 30.0%
ACCGTGTATTTATGTAAAAG+TGG - Chr3:96389244-96389263 MsG0380017451.01.T01:three_prime_UTR 30.0%
ACCTAACAATACATACAGTA+GGG + Chr3:96392790-96392809 None:intergenic 30.0%
ACTATTTACAAGAATTGCAG+GGG - Chr3:96391373-96391392 MsG0380017451.01.T01:intron 30.0%
ACTCTACAGAATACATTACA+TGG + Chr3:96392079-96392098 None:intergenic 30.0%
AGAATTATGAGAAGGAAGAA+TGG + Chr3:96393445-96393464 None:intergenic 30.0%
AGTTCACAAAAAAAGGAGTT+AGG - Chr3:96394363-96394382 MsG0380017451.01.T01:intron 30.0%
ATAGAAAGTGAAAATGAGAG+GGG + Chr3:96390125-96390144 None:intergenic 30.0%
ATCTTGAATGATTCCTCAAA+TGG + Chr3:96390773-96390792 None:intergenic 30.0%
ATGCATATGTTAGAAGAGTT+AGG - Chr3:96389618-96389637 MsG0380017451.01.T01:CDS 30.0%
ATTAATCGCTTGAGTAAGAT+AGG - Chr3:96389429-96389448 MsG0380017451.01.T01:three_prime_UTR 30.0%
ATTGCCCCAAATATAAATCA+CGG + Chr3:96392241-96392260 None:intergenic 30.0%
CAAGTAGGAAAACATCATAA+TGG + Chr3:96392365-96392384 None:intergenic 30.0%
CAATTGGTGAAAGAGAATAA+TGG - Chr3:96394217-96394236 MsG0380017451.01.T01:intron 30.0%
CACTATTTACAAGAATTGCA+GGG - Chr3:96391372-96391391 MsG0380017451.01.T01:intron 30.0%
CTAATAGCAAGTTGTTAAGA+TGG + Chr3:96389556-96389575 None:intergenic 30.0%
CTATTATCGATAAACCAATC+AGG + Chr3:96393054-96393073 None:intergenic 30.0%
GAAAAAAAAGTTTAGGCACA+AGG + Chr3:96393224-96393243 None:intergenic 30.0%
GAAAGAGAATAATGGCAAAA+AGG - Chr3:96394225-96394244 MsG0380017451.01.T01:intron 30.0%
GACAAGGAAAAAAAAAAGAC+GGG - Chr3:96394417-96394436 MsG0380017451.01.T01:intron 30.0%
GATACTAATACACATAGTGT+TGG - Chr3:96392863-96392882 MsG0380017451.01.T01:intron 30.0%
GCAAAGAATATGTAGAAAGT+TGG + Chr3:96390946-96390965 None:intergenic 30.0%
GGACAAGGAAAAAAAAAAGA+CGG - Chr3:96394416-96394435 MsG0380017451.01.T01:intron 30.0%
GTAATGAAATCTGATACCAA+GGG - Chr3:96392933-96392952 MsG0380017451.01.T01:intron 30.0%
TAAAGATCATTGGAGTGATA+AGG + Chr3:96391781-96391800 None:intergenic 30.0%
TAACAGACCATTATTCAAGT+AGG + Chr3:96392380-96392399 None:intergenic 30.0%
TAGAAGCTGTTAGACTTATA+TGG + Chr3:96392192-96392211 None:intergenic 30.0%
TAGGAAAACATCATAATGGT+AGG + Chr3:96392361-96392380 None:intergenic 30.0%
TATGTATTCTCAGGATCAAA+AGG + Chr3:96392972-96392991 None:intergenic 30.0%
TCACTATTTACAAGAATTGC+AGG - Chr3:96391371-96391390 MsG0380017451.01.T01:intron 30.0%
TCCAACTTAGGATTTGAATT+TGG - Chr3:96393718-96393737 MsG0380017451.01.T01:intron 30.0%
TGGAGAATTGACAGAAAAAA+AGG + Chr3:96390547-96390566 None:intergenic 30.0%
TGTAATGAAATCTGATACCA+AGG - Chr3:96392932-96392951 MsG0380017451.01.T01:intron 30.0%
TTACTATGATGCAGAGATAT+TGG - Chr3:96393793-96393812 MsG0380017451.01.T01:intron 30.0%
TTCTGAGTATGAGGAATTAT+CGG - Chr3:96393522-96393541 MsG0380017451.01.T01:intron 30.0%
TTGAGTGAATAATTCCACAA+TGG + Chr3:96391057-96391076 None:intergenic 30.0%
! AAGCTAGAGTTTATGACTTT+TGG + Chr3:96389309-96389328 None:intergenic 30.0%
! ACGAACATTTTAGATCGATA+CGG + Chr3:96391276-96391295 None:intergenic 30.0%
! ATATTTTCTGTTCTGTTTCG+GGG - Chr3:96393381-96393400 MsG0380017451.01.T01:intron 30.0%
! CATATTTTCTGTTCTGTTTC+GGG - Chr3:96393380-96393399 MsG0380017451.01.T01:intron 30.0%
! CATCGATATATTTTGCATCA+AGG - Chr3:96392588-96392607 MsG0380017451.01.T01:intron 30.0%
! CATTTTCCTACTCTATATCA+AGG + Chr3:96389828-96389847 None:intergenic 30.0%
! GCATATTTTCTGTTCTGTTT+CGG - Chr3:96393379-96393398 MsG0380017451.01.T01:intron 30.0%
! GCATTTTTCCATATAATCAG+AGG + Chr3:96392739-96392758 None:intergenic 30.0%
! GGATATCCTAAGTTTAGAAT+TGG - Chr3:96389852-96389871 MsG0380017451.01.T01:CDS 30.0%
! GTCATTGTCTTGTATGTTTT+GGG - Chr3:96393274-96393293 MsG0380017451.01.T01:intron 30.0%
! TATGCTTGTGTTTTGTACTA+GGG - Chr3:96394038-96394057 MsG0380017451.01.T01:intron 30.0%
! TGTATTCTGTAGAGTATTCA+CGG - Chr3:96392084-96392103 MsG0380017451.01.T01:intron 30.0%
! TGTCATTGTCTTGTATGTTT+TGG - Chr3:96393273-96393292 MsG0380017451.01.T01:intron 30.0%
! TTATGCTTGTGTTTTGTACT+AGG - Chr3:96394037-96394056 MsG0380017451.01.T01:intron 30.0%
! TTTTCTTTCAAGAGGCTAAA+AGG - Chr3:96391422-96391441 MsG0380017451.01.T01:intron 30.0%
!! AAAAAAAGGAGTTAGGTTGA+GGG - Chr3:96394370-96394389 MsG0380017451.01.T01:intron 30.0%
!! CATCTTAACAACTTGCTATT+AGG - Chr3:96389554-96389573 MsG0380017451.01.T01:three_prime_UTR 30.0%
!! CTAATGTGGTATTGGATTTT+TGG + Chr3:96391713-96391732 None:intergenic 30.0%
!! CTGATTGGTTTATCGATAAT+AGG - Chr3:96393052-96393071 MsG0380017451.01.T01:intron 30.0%
!!! CAATTTTTTAGGATGCAGAA+AGG - Chr3:96394094-96394113 MsG0380017451.01.T01:intron 30.0%
!!! GATTGACACTTTTAAAACAG+TGG + Chr3:96390496-96390515 None:intergenic 30.0%
!!! TCCTTTTTTTGTGAACTTCA+TGG + Chr3:96394360-96394379 None:intergenic 30.0%
AAAAGCAGAAAAGCAGATCA+TGG - Chr3:96391666-96391685 MsG0380017451.01.T01:intron 35.0%
AAAATATCCCCATAAAACCG+AGG + Chr3:96393104-96393123 None:intergenic 35.0%
AATGAATGAAAACGCGTTGA+TGG + Chr3:96390567-96390586 None:intergenic 35.0%
AATGACTGCAAGTAATCCAT+TGG + Chr3:96391617-96391636 None:intergenic 35.0%
AGCTTGAAGATGATCTTCTT+TGG - Chr3:96394180-96394199 MsG0380017451.01.T01:intron 35.0%
AGGTACCCGTGATTTATATT+TGG - Chr3:96392232-96392251 MsG0380017451.01.T01:intron 35.0%
AGTCTTTAGACTCTGATATG+TGG - Chr3:96392480-96392499 MsG0380017451.01.T01:intron 35.0%
ATGAATATCCGAGATTTGTG+GGG + Chr3:96389879-96389898 None:intergenic 35.0%
ATGGTCGAAAGTGATTCTAA+AGG + Chr3:96389581-96389600 None:intergenic 35.0%
CAAGGAAAAAAAAAAGACGG+GGG - Chr3:96394419-96394438 MsG0380017451.01.T01:intron 35.0%
CAGAAAATATGCCAACTGTA+AGG + Chr3:96393371-96393390 None:intergenic 35.0%
CATAGCTGAATTCGATTTCA+TGG - Chr3:96389502-96389521 MsG0380017451.01.T01:three_prime_UTR 35.0%
CATTAACACGTGTCATACAT+CGG + Chr3:96392115-96392134 None:intergenic 35.0%
CCTAACAATACATACAGTAG+GGG + Chr3:96392789-96392808 None:intergenic 35.0%
CTCCTAAAATCAACAAAGGT+TGG + Chr3:96391090-96391109 None:intergenic 35.0%
CTGCAAAAATACACCTCAAT+TGG - Chr3:96391153-96391172 MsG0380017451.01.T01:intron 35.0%
CTTAAGGTCTAATGTGGTAT+TGG + Chr3:96391721-96391740 None:intergenic 35.0%
GAATTTGGTTGATCAGGATA+GGG - Chr3:96393733-96393752 MsG0380017451.01.T01:intron 35.0%
GCAACTCCTAAAATCAACAA+AGG + Chr3:96391094-96391113 None:intergenic 35.0%
GCCATGAAGTTCACAAAAAA+AGG - Chr3:96394356-96394375 MsG0380017451.01.T01:intron 35.0%
GGAAACAATATTCCACCTAT+CGG + Chr3:96393418-96393437 None:intergenic 35.0%
GGAACAAAAGAGGAAAATGA+GGG + Chr3:96390343-96390362 None:intergenic 35.0%
GGAACAAGAAAGGATTCAAT+TGG - Chr3:96394201-96394220 MsG0380017451.01.T01:intron 35.0%
GGAATCATTCAAGATGTCAA+AGG - Chr3:96390778-96390797 MsG0380017451.01.T01:intron 35.0%
GGATTTGAATTTGGTTGATC+AGG - Chr3:96393727-96393746 MsG0380017451.01.T01:intron 35.0%
GGCAAAAAGGAACAAAGATA+TGG - Chr3:96394238-96394257 MsG0380017451.01.T01:intron 35.0%
GGTACCCGTGATTTATATTT+GGG - Chr3:96392233-96392252 MsG0380017451.01.T01:intron 35.0%
GGTCTCAAGTTAAACATAAG+AGG - Chr3:96389523-96389542 MsG0380017451.01.T01:three_prime_UTR 35.0%
GTACCCGTGATTTATATTTG+GGG - Chr3:96392234-96392253 MsG0380017451.01.T01:intron 35.0%
TACTCAATTACTTGTAACGC+CGG + Chr3:96393200-96393219 None:intergenic 35.0%
TAGGCTTGAATATCTTTGGA+AGG + Chr3:96393480-96393499 None:intergenic 35.0%
TATCAAAAGGATACCTACCT+CGG - Chr3:96393084-96393103 MsG0380017451.01.T01:intron 35.0%
TATCGATAAACCAATCAGGA+GGG + Chr3:96393050-96393069 None:intergenic 35.0%
TGAATTTGGTTGATCAGGAT+AGG - Chr3:96393732-96393751 MsG0380017451.01.T01:intron 35.0%
TGGAACAAAAGAGGAAAATG+AGG + Chr3:96390344-96390363 None:intergenic 35.0%
TGGTTAGGCTTGAATATCTT+TGG + Chr3:96393484-96393503 None:intergenic 35.0%
TTATCGATAAACCAATCAGG+AGG + Chr3:96393051-96393070 None:intergenic 35.0%
TTGCCCCAAATATAAATCAC+GGG + Chr3:96392240-96392259 None:intergenic 35.0%
TTTCGGAGAACAACTTAGTA+GGG - Chr3:96390987-96391006 MsG0380017451.01.T01:intron 35.0%
! AAATCCTAAGTTGGAAAGCT+TGG + Chr3:96393713-96393732 None:intergenic 35.0%
! AAATGTTCGTTTTGTGTTGC+AGG - Chr3:96391286-96391305 MsG0380017451.01.T01:intron 35.0%
! AAGGCAGTTTAGGTTTAGAA+GGG + Chr3:96389932-96389951 None:intergenic 35.0%
! AATGTTCGTTTTGTGTTGCA+GGG - Chr3:96391287-96391306 MsG0380017451.01.T01:intron 35.0%
! AATTGTATCATCCTCTGAAG+AGG - Chr3:96394126-96394145 MsG0380017451.01.T01:intron 35.0%
! AATTTTTGCATGCAACCCAT+TGG - Chr3:96389904-96389923 MsG0380017451.01.T01:CDS 35.0%
! ATGGGGATATTTTGCTTACA+TGG - Chr3:96393111-96393130 MsG0380017451.01.T01:intron 35.0%
! CAAAAAAAGGAGTTAGGTTG+AGG - Chr3:96394369-96394388 MsG0380017451.01.T01:intron 35.0%
! CACTGTTCTTTTCTTTCAAG+AGG - Chr3:96391414-96391433 MsG0380017451.01.T01:intron 35.0%
! GGTAGGTATCCTTTTGATAA+CGG + Chr3:96393083-96393102 None:intergenic 35.0%
! GTTCTCTGAGAATTATGAGA+AGG + Chr3:96393453-96393472 None:intergenic 35.0%
! TAGTGATAATGATGGAAGCT+CGG - Chr3:96393766-96393785 MsG0380017451.01.T01:intron 35.0%
! TATATTTTGCATCAAGGCTC+TGG - Chr3:96392594-96392613 MsG0380017451.01.T01:intron 35.0%
!! AAAAAAGGAGTTAGGTTGAG+GGG - Chr3:96394371-96394390 MsG0380017451.01.T01:intron 35.0%
!! AAAGGGTGCTCACATTTAAA+AGG + Chr3:96390254-96390273 None:intergenic 35.0%
!! CTTGCAGTCATTTTCTCTTT+TGG - Chr3:96391625-96391644 MsG0380017451.01.T01:intron 35.0%
!! GATCTTCTTTGGAACAAGAA+AGG - Chr3:96394191-96394210 MsG0380017451.01.T01:intron 35.0%
!!! ATACTTTTTCGATCATAGCG+TGG - Chr3:96392287-96392306 MsG0380017451.01.T01:intron 35.0%
AAAAGCAGATCATGGCGATA+TGG - Chr3:96391674-96391693 MsG0380017451.01.T01:intron 40.0%
AAACCTGCTATCATCAAAGC+TGG + Chr3:96392267-96392286 None:intergenic 40.0%
AAAGAGCTTGGTACCAATTG+AGG + Chr3:96391169-96391188 None:intergenic 40.0%
AAAGATGGTACGAGAGTGAA+AGG - Chr3:96394395-96394414 MsG0380017451.01.T01:intron 40.0%
AACCTGCATCTCTTTATCAC+TGG - Chr3:96391952-96391971 MsG0380017451.01.T01:intron 40.0%
AAGAATTGCAGGGGAGTTAT+TGG - Chr3:96391382-96391401 MsG0380017451.01.T01:intron 40.0%
AAGCATCAAGTTCCTGAAGA+TGG + Chr3:96393504-96393523 None:intergenic 40.0%
ACACGGTGTATTTATGTACC+TGG + Chr3:96389231-96389250 None:intergenic 40.0%
ACATCATAATGGTAGGCAGA+TGG + Chr3:96392354-96392373 None:intergenic 40.0%
ACCTACCCTTGATATAGAGT+AGG - Chr3:96389819-96389838 MsG0380017451.01.T01:CDS 40.0%
ACGGTGTATTTATGTACCTG+GGG + Chr3:96389229-96389248 None:intergenic 40.0%
ACTTGATGCTTCTGAGTATG+AGG - Chr3:96393513-96393532 MsG0380017451.01.T01:intron 40.0%
AGATACACATGCCTCATTTG+TGG - Chr3:96393309-96393328 MsG0380017451.01.T01:intron 40.0%
AGCTGTGAGGGAAATTAACA+TGG - Chr3:96390743-96390762 MsG0380017451.01.T01:intron 40.0%
AGGAATTGCAATTCCAATGG+CGG - Chr3:96391587-96391606 MsG0380017451.01.T01:intron 40.0%
AGTACGTAGTATGTCACTCA+GGG - Chr3:96393557-96393576 MsG0380017451.01.T01:intron 40.0%
ATGAGAAGGAAGAATGGTAG+CGG + Chr3:96393439-96393458 None:intergenic 40.0%
ATTCAAGCCTAACCATCTTC+AGG - Chr3:96393489-96393508 MsG0380017451.01.T01:intron 40.0%
CAAAGAGTTTGGCAGTTCTT+AGG - Chr3:96392554-96392573 MsG0380017451.01.T01:intron 40.0%
CAAATCAATGGTGCAACACA+AGG + Chr3:96392657-96392676 None:intergenic 40.0%
CAACTTAGTAGGGATACAGA+TGG - Chr3:96390997-96391016 MsG0380017451.01.T01:intron 40.0%
CAAGGTTGAAAATCCTTCGT+CGG - Chr3:96391564-96391583 MsG0380017451.01.T01:intron 40.0%
CACGGTGTATTTATGTACCT+GGG + Chr3:96389230-96389249 None:intergenic 40.0%
CCATCATTATCACTATCACG+TGG + Chr3:96393761-96393780 None:intergenic 40.0%
CCCCTACTGTATGTATTGTT+AGG - Chr3:96392786-96392805 MsG0380017451.01.T01:intron 40.0%
CTTTCGGAGAACAACTTAGT+AGG - Chr3:96390986-96391005 MsG0380017451.01.T01:intron 40.0%
CTTTGTTCATTAACTCGGAC+TGG + Chr3:96393007-96393026 None:intergenic 40.0%
GATCATTGAAGCTGTTACTG+CGG + Chr3:96393880-96393899 None:intergenic 40.0%
GATCATTGAAGCTGTTACTG+TGG + Chr3:96393880-96393899 None:intergenic 40.0%
GATCTTCTCTCTCTAGATGT+CGG + Chr3:96389999-96390018 None:intergenic 40.0%
GCAAGCTGTGTTCATTGAAA+TGG - Chr3:96392757-96392776 MsG0380017451.01.T01:intron 40.0%
GCCAAACTCTTTGTATGCAT+GGG + Chr3:96392547-96392566 None:intergenic 40.0%
GTACATACGTTACACCTGAA+GGG + Chr3:96390098-96390117 None:intergenic 40.0%
GTGCTCACATTTAAAAGGAG+AGG + Chr3:96390249-96390268 None:intergenic 40.0%
TAACAGCTTCTACAAACTGC+AGG - Chr3:96392200-96392219 MsG0380017451.01.T01:intron 40.0%
TAAGGCTGTAAATCCAGCTA+TGG + Chr3:96393353-96393372 None:intergenic 40.0%
TACTCCAAGCTTTCCAACTT+AGG - Chr3:96393706-96393725 MsG0380017451.01.T01:intron 40.0%
TAGGCATCTCCGTTATCAAA+AGG - Chr3:96393071-96393090 MsG0380017451.01.T01:intron 40.0%
TCAAGTTCCTGAAGATGGTT+AGG + Chr3:96393499-96393518 None:intergenic 40.0%
TCCCATGCATACAAAGAGTT+TGG - Chr3:96392543-96392562 MsG0380017451.01.T01:intron 40.0%
TCCTACTCTATATCAAGGGT+AGG + Chr3:96389823-96389842 None:intergenic 40.0%
TCTACAAACTGCAGGATATG+TGG - Chr3:96392208-96392227 MsG0380017451.01.T01:intron 40.0%
TCTCATTGAAGCTGTTACTG+TGG + Chr3:96393934-96393953 None:intergenic 40.0%
TCTTGCATTTCAATTCAGGG+AGG - Chr3:96391802-96391821 MsG0380017451.01.T01:intron 40.0%
TGCCAAACTCTTTGTATGCA+TGG + Chr3:96392548-96392567 None:intergenic 40.0%
TGGATTTACAGCCTTACAGT+TGG - Chr3:96393357-96393376 MsG0380017451.01.T01:intron 40.0%
TGGGGTCCAATTCTAAACTT+AGG + Chr3:96389861-96389880 None:intergenic 40.0%
TGGTCATTTCCTTCCTAAGT+TGG - Chr3:96394334-96394353 MsG0380017451.01.T01:intron 40.0%
TGTACATACGTTACACCTGA+AGG + Chr3:96390099-96390118 None:intergenic 40.0%
TTAATTTCCCTCACAGCTGA+AGG + Chr3:96390741-96390760 None:intergenic 40.0%
TTATCACTGGACAGTAGTGA+AGG - Chr3:96391965-96391984 MsG0380017451.01.T01:intron 40.0%
TTGAGTAAGATAGGCTACAC+TGG - Chr3:96389438-96389457 MsG0380017451.01.T01:three_prime_UTR 40.0%
TTTATGTACCTGGGGAATAC+CGG + Chr3:96389221-96389240 None:intergenic 40.0%
! AATCCAGCTATGGTCTTGAA+TGG + Chr3:96393343-96393362 None:intergenic 40.0%
! ATGGCAATTGATAGTCTCCT+GGG - Chr3:96393130-96393149 MsG0380017451.01.T01:intron 40.0%
! ATTCCAGCTTTGATGATAGC+AGG - Chr3:96392261-96392280 MsG0380017451.01.T01:intron 40.0%
! CAGAGTACCCTCTGATTATA+TGG - Chr3:96392728-96392747 MsG0380017451.01.T01:intron 40.0%
! CCACGTGATAGTGATAATGA+TGG - Chr3:96393758-96393777 MsG0380017451.01.T01:intron 40.0%
! GAAGGCAGTTTAGGTTTAGA+AGG + Chr3:96389933-96389952 None:intergenic 40.0%
! GACGAAGGATTTTCAACCTT+GGG + Chr3:96391565-96391584 None:intergenic 40.0%
! GCTTGAATATCTTTGGAAGG+AGG + Chr3:96393477-96393496 None:intergenic 40.0%
! TTAACATGGAGCACCATTTG+AGG - Chr3:96390757-96390776 MsG0380017451.01.T01:intron 40.0%
!! ATACCTACCTCGGTTTTATG+GGG - Chr3:96393094-96393113 MsG0380017451.01.T01:intron 40.0%
!! CGAGGCTTTATTGCAGATTA+TGG - Chr3:96391828-96391847 MsG0380017451.01.T01:intron 40.0%
!! GATACCTACCTCGGTTTTAT+GGG - Chr3:96393093-96393112 MsG0380017451.01.T01:intron 40.0%
!! TACCAAGCTCTTTCTAGCTT+GGG - Chr3:96391176-96391195 MsG0380017451.01.T01:intron 40.0%
!!! GGCCAACCTTTGTTGATTTT+AGG - Chr3:96391085-96391104 MsG0380017451.01.T01:intron 40.0%
!!! GTCGGTAAGTTTTGAAAGAG+AGG + Chr3:96389981-96390000 None:intergenic 40.0%
AAAAAAAAGACGGGGGAGCA+AGG - Chr3:96394426-96394445 MsG0380017451.01.T01:intron 45.0%
AAACTGCCTTCTCACCTCTT+TGG - Chr3:96389942-96389961 MsG0380017451.01.T01:CDS 45.0%
AAGAGGTGAGAAGGCAGTTT+AGG + Chr3:96389942-96389961 None:intergenic 45.0%
AAGTTTCAACTCTCCCCTGT+TGG + Chr3:96393831-96393850 None:intergenic 45.0%
AATATTCAGACAGCACCTCC+AGG + Chr3:96394073-96394092 None:intergenic 45.0%
AATTGCAATTCCTCCGACGA+AGG + Chr3:96391580-96391599 None:intergenic 45.0%
AATTTCCTCCTTCAGCTGTG+AGG - Chr3:96390730-96390749 MsG0380017451.01.T01:intron 45.0%
ACTCTGATATGTGGTCTCCT+TGG - Chr3:96392489-96392508 MsG0380017451.01.T01:intron 45.0%
ACTGGAAGGACTCCATTTGA+AGG + Chr3:96392522-96392541 None:intergenic 45.0%
ACTTCATGGCCAACTTAGGA+AGG + Chr3:96394346-96394365 None:intergenic 45.0%
AGAGTTTGGCAGTTCTTAGG+AGG - Chr3:96392557-96392576 MsG0380017451.01.T01:intron 45.0%
AGGAAATGCACCCAATGTTG+AGG + Chr3:96390229-96390248 None:intergenic 45.0%
ATAAAGAGATGCAGGTTCCC+AGG + Chr3:96391949-96391968 None:intergenic 45.0%
ATACGTTACACCTGAAGGGT+GGG + Chr3:96390094-96390113 None:intergenic 45.0%
ATCCATTGGTATACCGCCAT+TGG + Chr3:96391603-96391622 None:intergenic 45.0%
ATTGGCATCTACTGCCATTG+TGG - Chr3:96391040-96391059 MsG0380017451.01.T01:intron 45.0%
ATTGTTTGAACCACAGGGAC+TGG - Chr3:96391522-96391541 MsG0380017451.01.T01:intron 45.0%
ATTTCCTCCTTCAGCTGTGA+GGG - Chr3:96390731-96390750 MsG0380017451.01.T01:intron 45.0%
ATTTGCAGCTGATCCGAAAG+AGG - Chr3:96392672-96392691 MsG0380017451.01.T01:intron 45.0%
CAAACTGCAGGATATGTGGA+AGG - Chr3:96392212-96392231 MsG0380017451.01.T01:intron 45.0%
CAGATTATGGTGTCCAGTGA+TGG - Chr3:96391841-96391860 MsG0380017451.01.T01:intron 45.0%
CAGTACGTAGTATGTCACTC+AGG - Chr3:96393556-96393575 MsG0380017451.01.T01:intron 45.0%
CGGAGGAATTGCAATTCCAA+TGG - Chr3:96391584-96391603 MsG0380017451.01.T01:intron 45.0%
CTGTTGTTCCATGCATTCCT+TGG + Chr3:96392711-96392730 None:intergenic 45.0%
GAAATGCACCCAATGTTGAG+GGG + Chr3:96390227-96390246 None:intergenic 45.0%
GAATTGGACCCCACAAATCT+CGG - Chr3:96389868-96389887 MsG0380017451.01.T01:CDS 45.0%
GACATACTACGTACTGCAGA+TGG + Chr3:96393552-96393571 None:intergenic 45.0%
GATGAGATGACAACCAACAG+GGG - Chr3:96393815-96393834 MsG0380017451.01.T01:intron 45.0%
GATTCTTGCCCCTCAACATT+GGG - Chr3:96390216-96390235 MsG0380017451.01.T01:CDS 45.0%
GGAAATGCACCCAATGTTGA+GGG + Chr3:96390228-96390247 None:intergenic 45.0%
GGATGAGATGACAACCAACA+GGG - Chr3:96393814-96393833 MsG0380017451.01.T01:intron 45.0%
GTACCATTCAAGACCATAGC+TGG - Chr3:96393337-96393356 MsG0380017451.01.T01:intron 45.0%
GTCCAGTGATAAAGAGATGC+AGG + Chr3:96391957-96391976 None:intergenic 45.0%
GTGAACTTCATGGCCAACTT+AGG + Chr3:96394350-96394369 None:intergenic 45.0%
TAAAGAGATGCAGGTTCCCA+GGG + Chr3:96391948-96391967 None:intergenic 45.0%
TATCCCCATAAAACCGAGGT+AGG + Chr3:96393100-96393119 None:intergenic 45.0%
TCGGATCAGCTGCAAATCAA+TGG + Chr3:96392669-96392688 None:intergenic 45.0%
TCTTGAACAAGTCTCGTGTC+TGG + Chr3:96392841-96392860 None:intergenic 45.0%
TCTTTGTATGCATGGGAGAC+TGG + Chr3:96392540-96392559 None:intergenic 45.0%
TGATACCAAGGGTTGTGCAA+TGG - Chr3:96392944-96392963 MsG0380017451.01.T01:intron 45.0%
TGATTCTTGCCCCTCAACAT+TGG - Chr3:96390215-96390234 MsG0380017451.01.T01:CDS 45.0%
TGGATGAGATGACAACCAAC+AGG - Chr3:96393813-96393832 MsG0380017451.01.T01:intron 45.0%
TGGTACTGTCTCCACAAATG+AGG + Chr3:96393323-96393342 None:intergenic 45.0%
TGTGTTGCAGGGTTTGTGTT+TGG - Chr3:96391298-96391317 MsG0380017451.01.T01:intron 45.0%
TGTTCTCCGAAAGCAATGAC+AGG + Chr3:96390979-96390998 None:intergenic 45.0%
TTATGTACCTGGGGAATACC+GGG + Chr3:96389220-96389239 None:intergenic 45.0%
TTCCAAGTGGTGTTCCTAGA+AGG - Chr3:96391906-96391925 MsG0380017451.01.T01:intron 45.0%
TTCCAATGGCGGTATACCAA+TGG - Chr3:96391598-96391617 MsG0380017451.01.T01:intron 45.0%
TTGCAGGGTTTGTGTTTGGA+CGG - Chr3:96391302-96391321 MsG0380017451.01.T01:intron 45.0%
TTTGCAGCTGATCCGAAAGA+GGG - Chr3:96392673-96392692 MsG0380017451.01.T01:intron 45.0%
! AATTACTTGTAACGCCGGCT+GGG + Chr3:96393195-96393214 None:intergenic 45.0%
! CATGGCAATTGATAGTCTCC+TGG - Chr3:96393129-96393148 MsG0380017451.01.T01:intron 45.0%
! CGACGAAGGATTTTCAACCT+TGG + Chr3:96391566-96391585 None:intergenic 45.0%
! CGCTTTTCACAACCCTCTTT+CGG + Chr3:96392688-96392707 None:intergenic 45.0%
! GCTTGAGCACTGTAGAACAT+TGG - Chr3:96391022-96391041 MsG0380017451.01.T01:intron 45.0%
! GGATACCTACCTCGGTTTTA+TGG - Chr3:96393092-96393111 MsG0380017451.01.T01:intron 45.0%
!! AGGTTTAGAAGGGTGCCAAT+GGG + Chr3:96389922-96389941 None:intergenic 45.0%
!! GTACCAAGCTCTTTCTAGCT+TGG - Chr3:96391175-96391194 MsG0380017451.01.T01:intron 45.0%
!! GTTAGGTTGAGGGGAAAAGA+TGG - Chr3:96394380-96394399 MsG0380017451.01.T01:intron 45.0%
!! TAGGTTTAGAAGGGTGCCAA+TGG + Chr3:96389923-96389942 None:intergenic 45.0%
!! AAAAAATTAATAATCATAAA+AGG + Chr3:96390523-96390542 None:intergenic 5.0%
AATACCGGGTTCGATTCCCA+GGG + Chr3:96389206-96389225 None:intergenic 50.0%
AGCCCAAGCTAGAAAGAGCT+TGG + Chr3:96391181-96391200 None:intergenic 50.0%
AGGTTCCATTGCACAACCCT+TGG + Chr3:96392952-96392971 None:intergenic 50.0%
AGTCTCCTGGGAATCAGTTC+TGG - Chr3:96393142-96393161 MsG0380017451.01.T01:intron 50.0%
ATTTCCCTCACAGCTGAAGG+AGG + Chr3:96390738-96390757 None:intergenic 50.0%
CAATCAGGAGGGACTGCAAT+AGG + Chr3:96393039-96393058 None:intergenic 50.0%
CAATTACTTGTAACGCCGGC+TGG + Chr3:96393196-96393215 None:intergenic 50.0%
CATACGTTACACCTGAAGGG+TGG + Chr3:96390095-96390114 None:intergenic 50.0%
CATTTGAAGGAGGAAGGCCA+AGG + Chr3:96392509-96392528 None:intergenic 50.0%
CTATTGCAGTCCCTCCTGAT+TGG - Chr3:96393037-96393056 MsG0380017451.01.T01:intron 50.0%
CTGTTTGTGTCCACTTCCCT+GGG - Chr3:96391929-96391948 MsG0380017451.01.T01:intron 50.0%
GAAAGCAATGACAGGAAGCG+CGG + Chr3:96390971-96390990 None:intergenic 50.0%
GAGAGACCAAAGAGGTGAGA+AGG + Chr3:96389951-96389970 None:intergenic 50.0%
GAGAGAGAGAGAGACCAAAG+AGG + Chr3:96389959-96389978 None:intergenic 50.0%
GCGCTTCCTGTCATTGCTTT+CGG - Chr3:96390970-96390989 MsG0380017451.01.T01:intron 50.0%
GGAAGGACTCCATTTGAAGG+AGG + Chr3:96392519-96392538 None:intergenic 50.0%
GGACTCCATTTGAAGGAGGA+AGG + Chr3:96392515-96392534 None:intergenic 50.0%
GGTACGAGAGTGAAAGGACA+AGG - Chr3:96394401-96394420 MsG0380017451.01.T01:intron 50.0%
GGTTGAAAATCCTTCGTCGG+AGG - Chr3:96391567-96391586 MsG0380017451.01.T01:intron 50.0%
GTACTAGGGCAGATTTGACC+TGG - Chr3:96394052-96394071 MsG0380017451.01.T01:intron 50.0%
GTCACATGGATACCGATAGG+TGG - Chr3:96393403-96393422 MsG0380017451.01.T01:intron 50.0%
GTCCACAACACTACCATCAC+TGG + Chr3:96391857-96391876 None:intergenic 50.0%
GTCTCCTGGGAATCAGTTCT+GGG - Chr3:96393143-96393162 MsG0380017451.01.T01:intron 50.0%
GTGGACACAAACAGCCTTCT+AGG + Chr3:96391923-96391942 None:intergenic 50.0%
TCATAGCGTGGCTTCTCAGA+TGG - Chr3:96392299-96392318 MsG0380017451.01.T01:intron 50.0%
TGTATGCATGGGAGACTGGA+AGG + Chr3:96392536-96392555 None:intergenic 50.0%
TGTTCTGTTTCGGGGTCACA+TGG - Chr3:96393389-96393408 MsG0380017451.01.T01:intron 50.0%
TTCAATTCAGGGAGGCTACG+AGG - Chr3:96391810-96391829 MsG0380017451.01.T01:intron 50.0%
TTTGGCAGTTCTTAGGAGGC+AGG - Chr3:96392561-96392580 MsG0380017451.01.T01:intron 50.0%
! AGCCTTCTAGGAACACCACT+TGG + Chr3:96391911-96391930 None:intergenic 50.0%
! ATTACTTGTAACGCCGGCTG+GGG + Chr3:96393194-96393213 None:intergenic 50.0%
! CTTGGCCTTCCTCCTTCAAA+TGG - Chr3:96392507-96392526 MsG0380017451.01.T01:intron 50.0%
! CTTTCCCAGAACTGATTCCC+AGG + Chr3:96393150-96393169 None:intergenic 50.0%
! GGTAGGCAGATGGCTTTTGA+AGG + Chr3:96392344-96392363 None:intergenic 50.0%
! GTCCAGTGATGGTAGTGTTG+TGG - Chr3:96391852-96391871 MsG0380017451.01.T01:intron 50.0%
! TTTGAACCACAGGGACTGGT+AGG - Chr3:96391526-96391545 MsG0380017451.01.T01:intron 50.0%
!! AAGCTCTTTCTAGCTTGGGC+TGG - Chr3:96391180-96391199 MsG0380017451.01.T01:intron 50.0%
!! CTGGGAATCAGTTCTGGGAA+AGG - Chr3:96393148-96393167 MsG0380017451.01.T01:intron 50.0%
!! GAAAAGCGCCAAGGAATGCA+TGG - Chr3:96392700-96392719 MsG0380017451.01.T01:intron 50.0%
!! TCTTTCTAGCTTGGGCTGGT+TGG - Chr3:96391184-96391203 MsG0380017451.01.T01:intron 50.0%
AATCGAACCCGGTATTCCCC+AGG - Chr3:96389210-96389229 MsG0380017451.01.T01:three_prime_UTR 55.0%
ACACCACTTGGAACGTCGTC+AGG + Chr3:96391899-96391918 None:intergenic 55.0%
AGATCCCCTCCGTCATTCTC+CGG - Chr3:96390014-96390033 MsG0380017451.01.T01:intron 55.0%
ATACCGGGTTCGATTCCCAG+GGG + Chr3:96389205-96389224 None:intergenic 55.0%
ATGCCTGACGACGTTCCAAG+TGG - Chr3:96391893-96391912 MsG0380017451.01.T01:intron 55.0%
CAGGAGGGACTGCAATAGGT+TGG + Chr3:96393035-96393054 None:intergenic 55.0%
CTAGGGCAGATTTGACCTGG+AGG - Chr3:96394055-96394074 MsG0380017451.01.T01:intron 55.0%
GAATACCGGGTTCGATTCCC+AGG + Chr3:96389207-96389226 None:intergenic 55.0%
GAGAGGAGAGAGGAGAAGGA+GGG + Chr3:96390043-96390062 None:intergenic 55.0%
GCGCAATCTGTTCCGTCGTT+AGG - Chr3:96390833-96390852 MsG0380017451.01.T01:intron 55.0%
GCTGTTTGTGTCCACTTCCC+TGG - Chr3:96391928-96391947 MsG0380017451.01.T01:intron 55.0%
GGGGTCACATGGATACCGAT+AGG - Chr3:96393400-96393419 MsG0380017451.01.T01:intron 55.0%
GTGACAGCAGTCCTCTTCAG+AGG + Chr3:96394140-96394159 None:intergenic 55.0%
TTCCCAGGGGGAACAATGCT+TGG + Chr3:96389192-96389211 None:intergenic 55.0%
! TTACTTGTAACGCCGGCTGG+GGG + Chr3:96393193-96393212 None:intergenic 55.0%
!! GAGGGTTGTGAAAAGCGCCA+AGG - Chr3:96392691-96392710 MsG0380017451.01.T01:intron 55.0%
AACTCGCCTACCAGTCCCTG+TGG + Chr3:96391535-96391554 None:intergenic 60.0%
AGGCGAGTTCAGCACTCCCA+AGG - Chr3:96391546-96391565 MsG0380017451.01.T01:intron 60.0%
ATCCCCTCCGTCATTCTCCG+GGG - Chr3:96390016-96390035 MsG0380017451.01.T01:intron 60.0%
CTCCTCTCTCCTCTCCCACA+GGG - Chr3:96390048-96390067 MsG0380017451.01.T01:intron 60.0%
GATCCCCTCCGTCATTCTCC+GGG - Chr3:96390015-96390034 MsG0380017451.01.T01:intron 60.0%
GATGCAGGTTCCCAGGGAAG+TGG + Chr3:96391942-96391961 None:intergenic 60.0%
GGAGAGGAGAGAGGAGAAGG+AGG + Chr3:96390044-96390063 None:intergenic 60.0%
GTGGGACCAGACCAGACAGA+CGG + Chr3:96390076-96390095 None:intergenic 60.0%
GTGGGAGAGGAGAGAGGAGA+AGG + Chr3:96390047-96390066 None:intergenic 60.0%
TACCGGGTTCGATTCCCAGG+GGG + Chr3:96389204-96389223 None:intergenic 60.0%
TCCTCTCTCCTCTCCCACAG+GGG - Chr3:96390049-96390068 MsG0380017451.01.T01:intron 60.0%
TCTCCTCTCTCCTCTCCCAC+AGG - Chr3:96390047-96390066 MsG0380017451.01.T01:intron 60.0%
TTCCCCCTGGGAATCGAACC+CGG - Chr3:96389199-96389218 MsG0380017451.01.T01:three_prime_UTR 60.0%
! GGCCAAGCATTGTTCCCCCT+GGG - Chr3:96389187-96389206 MsG0380017451.01.T01:three_prime_UTR 60.0%
! TGGCCAAGCATTGTTCCCCC+TGG - Chr3:96389186-96389205 MsG0380017451.01.T01:three_prime_UTR 60.0%
ACCAGACAGACGGACCCCTG+TGG + Chr3:96390066-96390085 None:intergenic 65.0%
ACCCCTGTGGGAGAGGAGAG+AGG + Chr3:96390053-96390072 None:intergenic 65.0%
AGGGGTCCGTCTGTCTGGTC+TGG - Chr3:96390067-96390086 MsG0380017451.01.T01:intron 65.0%
CCAGACAGACGGACCCCTGT+GGG + Chr3:96390065-96390084 None:intergenic 65.0%
CTGGTCTGGTCCCACCCTTC+AGG - Chr3:96390081-96390100 MsG0380017451.01.T01:intron 65.0%
GAGAGGAGAAGGAGGGTCCC+CGG + Chr3:96390036-96390055 None:intergenic 65.0%
GGAGGGTCCCCGGAGAATGA+CGG + Chr3:96390026-96390045 None:intergenic 65.0%
TCCTCTTCGTCACCCCCAGC+CGG - Chr3:96393178-96393197 MsG0380017451.01.T01:intron 65.0%
! GGTCCCCGGAGAATGACGGA+GGG + Chr3:96390022-96390041 None:intergenic 65.0%
! GTCCCCGGAGAATGACGGAG+GGG + Chr3:96390021-96390040 None:intergenic 65.0%
CAGACGGACCCCTGTGGGAG+AGG + Chr3:96390060-96390079 None:intergenic 70.0%
CCCACAGGGGTCCGTCTGTC+TGG - Chr3:96390062-96390081 MsG0380017451.01.T01:intron 70.0%
GGGTCCCCGGAGAATGACGG+AGG + Chr3:96390023-96390042 None:intergenic 70.0%
GCCGGCTGGGGGTGACGAAG+AGG + Chr3:96393182-96393201 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 96389178 96394560 96389178 ID=MsG0380017451.01;Name=MsG0380017451.01
Chr3 mRNA 96389178 96394560 96389178 ID=MsG0380017451.01.T01;Parent=MsG0380017451.01;Name=MsG0380017451.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0.25|0.4|0.8|0.5|0.6|5|433|216
Chr3 exon 96389178 96389674 96389178 ID=MsG0380017451.01.T01:exon:17554;Parent=MsG0380017451.01.T01
Chr3 exon 96389772 96389989 96389772 ID=MsG0380017451.01.T01:exon:17553;Parent=MsG0380017451.01.T01
Chr3 exon 96390195 96390438 96390195 ID=MsG0380017451.01.T01:exon:17552;Parent=MsG0380017451.01.T01
Chr3 exon 96392130 96392200 96392130 ID=MsG0380017451.01.T01:exon:17551;Parent=MsG0380017451.01.T01
Chr3 exon 96394507 96394560 96394507 ID=MsG0380017451.01.T01:exon:17550;Parent=MsG0380017451.01.T01
Chr3 CDS 96394507 96394560 96394507 ID=MsG0380017451.01.T01:cds;Parent=MsG0380017451.01.T01
Chr3 CDS 96392130 96392200 96392130 ID=MsG0380017451.01.T01:cds;Parent=MsG0380017451.01.T01
Chr3 CDS 96390195 96390438 96390195 ID=MsG0380017451.01.T01:cds;Parent=MsG0380017451.01.T01
Chr3 CDS 96389772 96389989 96389772 ID=MsG0380017451.01.T01:cds;Parent=MsG0380017451.01.T01
Chr3 CDS 96389611 96389674 96389611 ID=MsG0380017451.01.T01:cds;Parent=MsG0380017451.01.T01
Chr3 three_prime_UTR 96389178 96389610 96389178 ID=MsG0380017451.01.T01:three_prime_utr;Parent=MsG0380017451.01.T01
Gene Sequence

>MsG0380017451.01.T01

ATGCGCAGTGGCCAAGCATTGTTCCCCCTGGGAATCGAACCCGGTATTCCCCAGGGACTGGTAGGCGAGTTCAGCACTCCCAAGGTTGAAAATCCTTCGTCGGAGGAATTGCAATTCCAATGGCGAATATTGCAAGATACACATGCCTCATTTGTGGAGACAGTACCATTCAAGACCATAGCTGGATTTACAGCCTTACAGTTGGCATATTTTCTGTTCTGTTTCGGGGTCACATGGATACCGATAGGTGGAATATTGTTTCCGCTACCATTCTTCCTTCTCATAATTCTCAGAGAACGCCTCCTTCCAAAGATATTCAAGCCTAACCATCTTCAGGAACTTGATGCTTCTGAGTATGAGGAATTATCGGATAGGGAGCCACGTGATAGTGATAATGATGGAAGCTCGGAAGATTACTATGATGCAGAGATATTGGATGAGATGACAACCAACAGGGGAGAGTTGAAACTTAGAACTGTAAGCTTCAATGATCGAAACCGCAGTAACAGCTTCAATGATCGAAACCACAGTAACAGCTTCAATGATCGAAACCACAGTAACAGCTTCAATGAGACAGACACAATTAAATTTGACCTGGAGGTGCTGTCTGAATATTACAATTTTTTAGGATGCAGAAAGGTTTTGATTTAA
Protein sequence

>MsG0380017451.01.T01

MRSGQALFPLGIEPGIPQGLVGEFSTPKVENPSSEELQFQWRILQDTHASFVETVPFKTIAGFTALQLAYFLFCFGVTWIPIGGILFPLPFFLLIILRERLLPKIFKPNHLQELDASEYEELSDREPRDSDNDGSSEDYYDAEILDEMTTNRGELKLRTVSFNDRNRSNSFNDRNHSNSFNDRNHSNSFNETDTIKFDLEVLSEYYNFLGCRKVLI*