AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040119.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040119.01.T01 MTR_6g033085 63.066 287 43 6 8 231 7 293 5.97e-119 340
MsG0780040119.01.T01 MTR_7g084770 98.473 131 2 0 1 131 1 131 7.15e-91 269
MsG0780040119.01.T01 MTR_7g084770 98.000 100 2 0 132 231 194 293 7.98e-70 216
MsG0780040119.01.T01 MTR_7g084760 97.710 131 3 0 1 131 1 131 2.08e-89 266
MsG0780040119.01.T01 MTR_7g084760 95.000 100 5 0 132 231 194 293 3.10e-68 212
MsG0780040119.01.T01 MTR_7g084750 87.023 131 17 0 1 131 1 131 7.09e-78 236
MsG0780040119.01.T01 MTR_7g084750 83.000 100 17 0 132 231 194 293 2.97e-62 196
MsG0780040119.01.T01 MTR_6g033055 79.389 131 27 0 1 131 1 131 1.56e-70 218
MsG0780040119.01.T01 MTR_6g033055 75.424 118 29 0 114 231 176 293 4.12e-62 196
MsG0780040119.01.T01 MTR_2g089140 37.113 291 100 7 7 227 11 288 2.73e-55 179
MsG0780040119.01.T01 MTR_4g045853 35.616 292 105 7 4 225 10 288 7.26e-51 167
MsG0780040119.01.T01 MTR_3g084630 38.699 292 105 7 1 229 1 281 4.64e-50 165
MsG0780040119.01.T01 MTR_3g084620 38.356 292 106 7 1 229 1 281 1.12e-49 164
MsG0780040119.01.T01 MTR_8g081040 37.500 280 102 7 9 225 12 281 3.54e-48 160
MsG0780040119.01.T01 MTR_7g093530 37.241 290 106 7 1 225 1 279 1.11e-47 159
MsG0780040119.01.T01 MTR_8g102220 35.154 293 103 8 1 229 1 270 1.22e-43 148
MsG0780040119.01.T01 MTR_7g056090 32.979 282 119 7 7 226 9 282 2.18e-41 142
MsG0780040119.01.T01 MTR_2g089140 36.889 225 72 5 73 227 1 225 2.46e-40 138
MsG0780040119.01.T01 MTR_8g479340 50.794 126 59 2 103 225 10 135 2.50e-38 130
MsG0780040119.01.T01 MTR_4g097640 51.220 123 54 2 10 131 15 132 3.18e-33 121
MsG0780040119.01.T01 MTR_4g097640 44.715 123 65 2 105 225 166 287 7.68e-29 110
MsG0780040119.01.T01 MTR_4g097670 51.220 123 54 2 10 131 15 132 3.18e-33 121
MsG0780040119.01.T01 MTR_4g097670 44.715 123 65 2 105 225 166 287 7.68e-29 110
MsG0780040119.01.T01 MTR_4g097700 57.426 101 42 1 32 131 69 169 3.43e-32 119
MsG0780040119.01.T01 MTR_4g097700 44.715 123 65 2 105 225 203 324 1.44e-28 110
MsG0780040119.01.T01 MTR_3g089540 33.750 240 100 7 51 231 49 288 4.66e-32 118
MsG0780040119.01.T01 MTR_4g128410 48.062 129 59 1 3 131 4 124 7.90e-32 117
MsG0780040119.01.T01 MTR_4g128410 46.491 114 55 3 116 226 171 281 1.69e-26 103
MsG0780040119.01.T01 MTR_4g128580 56.000 100 44 0 32 131 26 125 3.35e-31 116
MsG0780040119.01.T01 MTR_4g128580 48.039 102 41 3 132 225 188 285 3.83e-22 92.4
MsG0780040119.01.T01 MTR_2g049030 29.749 279 131 8 7 226 5 277 4.37e-31 115
MsG0780040119.01.T01 MTR_5g091730 65.432 81 28 0 50 130 46 126 6.86e-31 115
MsG0780040119.01.T01 MTR_5g091730 33.628 113 62 4 116 227 180 280 3.47e-12 64.7
MsG0780040119.01.T01 MTR_2g049130 30.996 271 124 6 8 215 1 271 1.76e-30 114
MsG0780040119.01.T01 MTR_8g102910 47.107 121 62 1 11 131 1 119 2.57e-30 114
MsG0780040119.01.T01 MTR_8g102910 40.000 130 63 6 100 225 161 279 1.75e-21 90.5
MsG0780040119.01.T01 MTR_4g128570 55.000 100 45 0 32 131 31 130 2.80e-30 113
MsG0780040119.01.T01 MTR_4g128570 47.368 95 34 3 132 225 193 272 7.97e-21 88.6
MsG0780040119.01.T01 MTR_4g126920 31.034 261 109 7 32 225 25 281 1.03e-29 112
MsG0780040119.01.T01 MTR_2g038860 54.000 100 46 0 32 131 26 125 1.41e-29 112
MsG0780040119.01.T01 MTR_2g038860 40.678 118 57 3 117 225 173 286 1.54e-20 88.2
MsG0780040119.01.T01 MTR_2g038705 54.000 100 46 0 32 131 26 125 1.41e-29 112
MsG0780040119.01.T01 MTR_2g038705 40.678 118 57 3 117 225 173 286 1.54e-20 88.2
MsG0780040119.01.T01 MTR_1g105900 45.600 125 66 1 8 130 8 132 3.43e-29 111
MsG0780040119.01.T01 MTR_1g105900 42.708 96 53 2 132 225 196 291 5.77e-22 92.0
MsG0780040119.01.T01 MTR_6g088320 45.161 124 60 2 8 131 8 123 5.63e-29 110
MsG0780040119.01.T01 MTR_6g088320 44.898 98 50 3 132 225 186 283 6.31e-24 97.1
MsG0780040119.01.T01 MTR_4g128400 43.704 135 64 2 1 131 1 127 3.20e-28 108
MsG0780040119.01.T01 MTR_4g128400 41.964 112 59 3 117 225 175 283 3.79e-23 95.1
MsG0780040119.01.T01 MTR_8g013055 52.427 103 49 0 29 131 28 130 9.26e-28 107
MsG0780040119.01.T01 MTR_1g105495 43.939 132 71 1 2 130 5 136 2.80e-27 106
MsG0780040119.01.T01 MTR_1g105495 48.421 95 48 1 132 225 200 294 8.07e-25 99.8
MsG0780040119.01.T01 MTR_8g064180 25.828 302 141 8 6 226 12 311 3.06e-23 95.9
MsG0780040119.01.T01 MTR_4g128590 43.548 124 64 3 110 227 154 277 3.27e-22 92.4
MsG0780040119.01.T01 MTR_4g128590 41.803 122 54 2 10 131 10 114 8.98e-20 85.9
MsG0780040119.01.T01 MTR_4g057450 25.773 291 144 7 5 225 16 304 3.48e-22 92.8
MsG0780040119.01.T01 MTR_1g063020 28.309 272 118 8 23 225 31 294 3.95e-22 92.4
MsG0780040119.01.T01 MTR_1g033420 36.434 129 77 2 5 130 8 134 3.51e-18 82.0
MsG0780040119.01.T01 MTR_5g029100 42.308 104 57 1 30 130 40 143 6.47e-18 81.6
MsG0780040119.01.T01 MTR_7g102260 31.690 142 73 3 5 130 3 136 6.16e-17 78.2
MsG0780040119.01.T01 MTR_7g102260 33.333 96 60 2 130 225 200 291 1.19e-11 63.5
MsG0780040119.01.T01 MTR_2g095800 39.640 111 62 2 23 130 45 153 2.48e-16 76.6
MsG0780040119.01.T01 MTR_8g090100 35.185 108 62 3 30 130 19 125 5.17e-13 67.4
MsG0780040119.01.T01 MTR_5g029100 34.677 124 65 2 10 130 2 112 1.90e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040119.01.T01 AT5G13870 81.452 124 23 0 7 130 7 130 2.08e-70 217
MsG0780040119.01.T01 AT5G13870 76.000 100 24 0 132 231 194 293 4.81e-56 181
MsG0780040119.01.T01 AT5G13870 81.452 124 23 0 7 130 7 130 2.08e-70 217
MsG0780040119.01.T01 AT5G13870 76.000 100 24 0 132 231 194 293 4.81e-56 181
MsG0780040119.01.T01 AT5G13870 81.452 124 23 0 7 130 7 130 2.08e-70 217
MsG0780040119.01.T01 AT5G13870 76.000 100 24 0 132 231 194 293 4.81e-56 181
MsG0780040119.01.T01 AT2G06850 75.000 132 32 1 1 131 3 134 1.68e-64 202
MsG0780040119.01.T01 AT2G06850 76.768 99 23 0 132 230 197 295 6.22e-56 180
MsG0780040119.01.T01 AT2G06850 76.768 99 23 0 132 230 137 235 3.75e-56 179
MsG0780040119.01.T01 AT2G06850 85.714 70 10 0 62 131 5 74 4.55e-35 125
MsG0780040119.01.T01 AT4G03210 36.770 291 113 6 5 231 7 290 1.03e-53 174
MsG0780040119.01.T01 AT5G65730 37.456 283 111 7 7 226 12 291 3.22e-53 173
MsG0780040119.01.T01 AT3G23730 36.111 288 110 6 8 229 11 290 5.23e-52 170
MsG0780040119.01.T01 AT4G14130 38.305 295 105 8 2 229 4 288 5.48e-51 167
MsG0780040119.01.T01 AT5G57550 37.024 289 113 6 1 226 1 283 1.34e-49 164
MsG0780040119.01.T01 AT4G03210 38.095 231 79 4 65 231 32 262 7.80e-45 151
MsG0780040119.01.T01 AT4G28850 33.333 285 121 7 12 229 9 291 2.20e-44 150
MsG0780040119.01.T01 AT5G57530 36.328 256 93 7 39 228 34 285 1.35e-40 140
MsG0780040119.01.T01 AT5G57540 34.981 263 101 7 32 228 26 284 1.70e-39 137
MsG0780040119.01.T01 AT4G37800 50.000 128 58 2 5 131 12 134 1.03e-33 123
MsG0780040119.01.T01 AT4G37800 48.936 94 47 1 132 225 197 289 6.34e-27 105
MsG0780040119.01.T01 AT4G13090 50.000 124 60 1 8 131 10 131 4.25e-33 121
MsG0780040119.01.T01 AT3G48580 31.718 227 119 7 30 225 32 253 9.97e-31 114
MsG0780040119.01.T01 AT1G11545 49.242 132 59 3 3 130 12 139 1.54e-30 115
MsG0780040119.01.T01 AT1G11545 44.231 104 57 1 123 225 196 299 6.52e-25 100
MsG0780040119.01.T01 AT5G57560 47.581 124 57 1 8 131 7 122 1.36e-29 112
MsG0780040119.01.T01 AT5G57560 50.495 101 39 3 132 225 185 281 2.02e-25 101
MsG0780040119.01.T01 AT4G25820 58.065 93 39 0 39 131 37 129 1.67e-29 112
MsG0780040119.01.T01 AT4G25820 42.424 99 49 3 132 226 192 286 1.06e-16 77.4
MsG0780040119.01.T01 AT4G25810 49.587 121 57 1 11 131 9 125 2.02e-29 111
MsG0780040119.01.T01 AT4G25810 48.000 100 42 4 132 225 188 283 3.20e-22 92.4
MsG0780040119.01.T01 AT4G30270 54.000 100 46 0 32 131 24 123 7.62e-29 109
MsG0780040119.01.T01 AT4G30270 48.454 97 34 3 130 225 184 265 1.72e-23 95.5
MsG0780040119.01.T01 AT3G25050 50.000 102 51 0 30 131 33 134 1.11e-28 109
MsG0780040119.01.T01 AT3G48580 29.555 247 118 7 30 225 32 273 1.19e-28 109
MsG0780040119.01.T01 AT2G18800 53.000 100 47 0 32 131 28 127 4.38e-28 108
MsG0780040119.01.T01 AT2G18800 36.607 112 52 4 130 225 188 296 3.64e-18 82.0
MsG0780040119.01.T01 AT2G14620 43.200 125 69 1 8 130 11 135 1.27e-26 104
MsG0780040119.01.T01 AT2G14620 40.816 98 56 2 130 225 197 294 2.30e-20 87.8
MsG0780040119.01.T01 AT4G13080 50.000 102 50 1 30 131 37 137 3.11e-26 103
MsG0780040119.01.T01 AT4G13080 36.842 95 59 1 132 226 199 292 2.40e-17 79.3
MsG0780040119.01.T01 AT5G48070 56.098 82 36 0 49 130 47 128 3.23e-24 97.8
MsG0780040119.01.T01 AT5G48070 44.545 110 55 3 117 225 177 281 1.01e-23 96.7
MsG0780040119.01.T01 AT4G30290 41.525 118 62 4 110 225 164 276 1.62e-23 95.9
MsG0780040119.01.T01 AT4G30290 58.824 68 28 0 63 130 56 123 1.61e-19 85.1
MsG0780040119.01.T01 AT3G44990 28.626 262 114 7 31 225 38 293 5.89e-23 94.7
MsG0780040119.01.T01 AT1G65310 42.727 110 57 3 117 225 177 281 2.65e-22 92.8
MsG0780040119.01.T01 AT1G65310 58.824 68 28 0 63 130 61 128 1.66e-19 85.1
MsG0780040119.01.T01 AT1G65310 42.727 110 57 3 117 225 199 303 3.03e-22 92.8
MsG0780040119.01.T01 AT1G65310 58.824 68 28 0 63 130 83 150 1.91e-19 85.5
MsG0780040119.01.T01 AT3G48580 27.442 215 101 6 62 225 4 214 2.72e-21 88.6
MsG0780040119.01.T01 AT4G30280 40.000 110 60 3 117 225 177 281 8.22e-21 88.6
MsG0780040119.01.T01 AT4G30280 58.824 68 28 0 63 130 61 128 1.45e-19 85.5
MsG0780040119.01.T01 AT2G14620 40.816 98 56 2 130 225 147 244 1.29e-20 87.4
MsG0780040119.01.T01 AT2G14620 50.633 79 39 0 52 130 7 85 1.69e-19 84.7
MsG0780040119.01.T01 AT2G14620 40.816 98 56 2 130 225 136 233 1.90e-20 87.0
MsG0780040119.01.T01 AT2G14620 60.000 60 24 0 71 130 15 74 6.57e-18 80.1
MsG0780040119.01.T01 AT1G14720 38.931 131 74 3 5 130 3 132 1.13e-17 80.9
MsG0780040119.01.T01 AT1G32170 26.667 240 108 7 54 225 54 293 1.90e-17 80.1
MsG0780040119.01.T01 AT2G36870 45.122 82 42 1 52 130 61 142 6.77e-17 75.9
MsG0780040119.01.T01 AT2G36870 45.122 82 42 1 52 130 61 142 1.23e-16 77.4
MsG0780040119.01.T01 AT4G18990 25.896 251 107 6 54 225 62 312 2.81e-16 77.0
MsG0780040119.01.T01 AT2G01850 34.921 126 78 2 9 130 7 132 8.41e-15 72.8
MsG0780040119.01.T01 AT1G10550 42.574 101 43 3 51 146 60 150 3.76e-13 67.8

Find 52 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAATGAGTTCTTCATTT+TGG 0.131936 7:+73243047 None:intergenic
GCCTTGTGTTGCACAGAATT+TGG 0.221522 7:-73244497 None:intergenic
ATCAGTGCAATAGTTATAAA+TGG 0.324527 7:-73244602 None:intergenic
CTTCCAAATGGTACATCAAC+TGG 0.347586 7:-73243130 None:intergenic
TCCAAAGGATCATATTTGTT+TGG 0.364894 7:+73243447 MsG0780040119.01.T01:CDS
TACAAAAGTTTCCACATTGA+TGG 0.366093 7:+73244454 MsG0780040119.01.T01:CDS
GCATCAAGATCACGAAATTC+AGG 0.366582 7:-73244538 None:intergenic
CTCAATGGCGTAGGCTAAGA+TGG 0.370855 7:+73244563 MsG0780040119.01.T01:CDS
TTTATAACTATTGCACTGAT+AGG 0.375154 7:+73244605 MsG0780040119.01.T01:CDS
GATCATATCAAATACTTCAA+TGG 0.398017 7:+73243178 MsG0780040119.01.T01:CDS
ACCTGCTATGAACGGTGCTT+TGG 0.403200 7:-73244431 None:intergenic
AAGCCAGTTGATGTACCATT+TGG 0.408085 7:+73243127 MsG0780040119.01.T01:CDS
GGTACATCAACTGGCTTCCT+TGG 0.412450 7:-73243121 None:intergenic
ACATTTGTTTGTAAAATGTA+AGG 0.414616 7:-73243683 None:intergenic
GAGTTCTTGGGGAACAGAAC+AGG 0.419669 7:+73243656 MsG0780040119.01.T01:CDS
GCCAAACAAATATGATCCTT+TGG 0.424354 7:-73243448 None:intergenic
GGGTAATAGTTTCTTCCAAA+TGG 0.437329 7:-73243142 None:intergenic
TTGCATTCAGGTGGAATTTG+AGG 0.453359 7:-73244637 None:intergenic
ATGAACATAAAGATGGTTCC+TGG 0.454098 7:+73243480 MsG0780040119.01.T01:CDS
TTACAAACAAATGTGTTCAC+TGG 0.454841 7:+73243692 MsG0780040119.01.T01:CDS
CAGTTTGGAATGCTGATGAT+TGG 0.479829 7:+73244374 MsG0780040119.01.T01:intron
GTGATCTTGATGCTGCTCAA+TGG 0.483264 7:+73244548 MsG0780040119.01.T01:CDS
ATGGTTCCTGGTGATTCAGC+TGG 0.504587 7:+73243492 MsG0780040119.01.T01:CDS
ACATCAACTGGCTTCCTTGG+AGG 0.507363 7:-73243118 None:intergenic
TCCAAAGCACCGTTCATAGC+AGG 0.508716 7:+73244430 MsG0780040119.01.T01:CDS
AGTTTGGAATGCTGATGATT+GGG 0.516143 7:+73244375 MsG0780040119.01.T01:intron
TGAAACTAAGATCAAACAAA+GGG 0.539959 7:-73243071 None:intergenic
CTTCACTCTGTGCTCCTCCA+AGG 0.543749 7:+73243104 MsG0780040119.01.T01:CDS
TCTTTATGTTCATACTGAAG+TGG 0.547122 7:-73243470 None:intergenic
CTTCAGTATGAACATAAAGA+TGG 0.549292 7:+73243473 MsG0780040119.01.T01:CDS
GTGCAACACAAGGCAAAAGA+TGG 0.550413 7:+73244506 MsG0780040119.01.T01:CDS
CAACACAAGGCAAAAGATGG+TGG 0.550815 7:+73244509 MsG0780040119.01.T01:CDS
CAAACAAATGTGTTCACTGG+TGG 0.551578 7:+73243695 MsG0780040119.01.T01:CDS
GTGGATTAGAGAAAACTGAT+TGG 0.562589 7:+73244407 MsG0780040119.01.T01:CDS
GCCAAATTCTGTGCAACACA+AGG 0.563859 7:+73244496 MsG0780040119.01.T01:CDS
TGATGAAAATTTATATGTCA+CGG 0.576058 7:-73244666 None:intergenic
CTTCATCTTGATAAGTACAC+TGG 0.576529 7:+73243217 MsG0780040119.01.T01:CDS
TTGATGCTGCTCAATGGCGT+AGG 0.593657 7:+73244554 MsG0780040119.01.T01:CDS
GATGATTGGGCAACAAGAGG+TGG 0.601731 7:+73244388 MsG0780040119.01.T01:CDS
GTGAAACTAAGATCAAACAA+AGG 0.607959 7:-73243072 None:intergenic
GAAGAAACTATTACCCCACA+TGG 0.609883 7:+73243149 MsG0780040119.01.T01:CDS
TCAATGGCGTAGGCTAAGAT+GGG 0.614694 7:+73244564 MsG0780040119.01.T01:CDS
AATGTGTTCACTGGTGGACA+AGG 0.617308 7:+73243701 MsG0780040119.01.T01:CDS
AACACAAGGCAAAAGATGGT+GGG 0.620136 7:+73244510 MsG0780040119.01.T01:CDS
CATATCAAATACTTCAATGG+TGG 0.624848 7:+73243181 MsG0780040119.01.T01:CDS
GATATGATCAAAAGCCCATG+TGG 0.628473 7:-73243164 None:intergenic
ATATGATCAAAAGCCCATGT+GGG 0.650159 7:-73243163 None:intergenic
ACTGTTCCAGCTGAATCACC+AGG 0.657325 7:-73243498 None:intergenic
ATGATTCACAACCATCAATG+TGG 0.677115 7:-73244465 None:intergenic
TATGATCAAAAGCCCATGTG+GGG 0.680488 7:-73243162 None:intergenic
GCTGATGATTGGGCAACAAG+AGG 0.682230 7:+73244385 MsG0780040119.01.T01:CDS
AAGAAACTATTACCCCACAT+GGG 0.695451 7:+73243150 MsG0780040119.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATAAATTAGTTAC+TGG - Chr7:73244214-73244233 None:intergenic 10.0%
!! TTTAAATATGATACAATATA+TGG - Chr7:73244179-73244198 None:intergenic 10.0%
!! TTAAGTTATTTATAGAAACA+TGG - Chr7:73243280-73243299 None:intergenic 15.0%
!! TTACTTTATAAATCTAAAAG+AGG - Chr7:73243913-73243932 None:intergenic 15.0%
!! AATCATATTGAGATATGATT+TGG - Chr7:73243965-73243984 None:intergenic 20.0%
!! ACATTTGTTTGTAAAATGTA+AGG - Chr7:73243686-73243705 None:intergenic 20.0%
!! ATTCAAGATTGTTAAAGATT+AGG - Chr7:73243849-73243868 None:intergenic 20.0%
!! TGTATGTACAAAAACATTTA+AGG + Chr7:73243533-73243552 MsG0780040119.01.T01:intron 20.0%
!! TTACACAAAAATAAATCAGT+TGG - Chr7:73244246-73244265 None:intergenic 20.0%
!!! AGTTATAAATGGTGTATTTT+TGG - Chr7:73244594-73244613 None:intergenic 20.0%
!!! ATAGTAAGTAACTAGTTTAA+TGG - Chr7:73243382-73243401 None:intergenic 20.0%
!!! TTATTTTTGTGTAACTATGT+TGG + Chr7:73244252-73244271 MsG0780040119.01.T01:intron 20.0%
!!! TTTCTAACTACTTTTTGTAT+AGG + Chr7:73243411-73243430 MsG0780040119.01.T01:intron 20.0%
! AAACTGTTGTATATCTTCAT+TGG - Chr7:73244360-73244379 None:intergenic 25.0%
! AATGAAGATATACAACAGTT+TGG + Chr7:73244359-73244378 MsG0780040119.01.T01:intron 25.0%
! ATCAGTGCAATAGTTATAAA+TGG - Chr7:73244605-73244624 None:intergenic 25.0%
! CTTACCTAAGAAGAATTAAT+TGG + Chr7:73244096-73244115 MsG0780040119.01.T01:intron 25.0%
! GATCATATCAAATACTTCAA+TGG + Chr7:73243178-73243197 MsG0780040119.01.T01:CDS 25.0%
! TACACCAATTAATTCTTCTT+AGG - Chr7:73244103-73244122 None:intergenic 25.0%
! TATAGAAACATGGTCTAAAT+AGG - Chr7:73243270-73243289 None:intergenic 25.0%
! TGAAACTAAGATCAAACAAA+GGG - Chr7:73243074-73243093 None:intergenic 25.0%
!! ATGATACAATATATGGATTG+TGG - Chr7:73244172-73244191 None:intergenic 25.0%
!! TTTATAACTATTGCACTGAT+AGG + Chr7:73244605-73244624 MsG0780040119.01.T01:CDS 25.0%
!!! AAATAGATTTTGAGTTCTTG+GGG + Chr7:73243645-73243664 MsG0780040119.01.T01:CDS 25.0%
!!! GAAATAGATTTTGAGTTCTT+GGG + Chr7:73243644-73243663 MsG0780040119.01.T01:CDS 25.0%
!!! TGAAATAGATTTTGAGTTCT+TGG + Chr7:73243643-73243662 MsG0780040119.01.T01:CDS 25.0%
AAGAACAAAGGATCTTTCTT+TGG + Chr7:73243729-73243748 MsG0780040119.01.T01:intron 30.0%
AGTTAAGTACTTACACAATC+TGG - Chr7:73243805-73243824 None:intergenic 30.0%
CATATCAAATACTTCAATGG+TGG + Chr7:73243181-73243200 MsG0780040119.01.T01:CDS 30.0%
CTTCAGTATGAACATAAAGA+TGG + Chr7:73243473-73243492 MsG0780040119.01.T01:CDS 30.0%
GTGAAACTAAGATCAAACAA+AGG - Chr7:73243075-73243094 None:intergenic 30.0%
GTTAAAGATTAGGTGACTAT+TGG - Chr7:73243839-73243858 None:intergenic 30.0%
TACAAAAGTTTCCACATTGA+TGG + Chr7:73244454-73244473 MsG0780040119.01.T01:CDS 30.0%
TCCAAAGGATCATATTTGTT+TGG + Chr7:73243447-73243466 MsG0780040119.01.T01:CDS 30.0%
TCTTTATGTTCATACTGAAG+TGG - Chr7:73243473-73243492 None:intergenic 30.0%
TGTTGTATATCTTCATTGGT+TGG - Chr7:73244356-73244375 None:intergenic 30.0%
TTACAAACAAATGTGTTCAC+TGG + Chr7:73243692-73243711 MsG0780040119.01.T01:CDS 30.0%
TTCACAGATACTCTATTCTA+TGG + Chr7:73243771-73243790 MsG0780040119.01.T01:intron 30.0%
! ATCTTCATTGGTTGGTTAAA+TGG - Chr7:73244348-73244367 None:intergenic 30.0%
!!! ACTACTTTTTGTATAGGTAC+TGG + Chr7:73243417-73243436 MsG0780040119.01.T01:intron 30.0%
AAAAGAGGAGCTAGATTTAG+TGG - Chr7:73243898-73243917 None:intergenic 35.0%
AAAGAGGAGCTAGATTTAGT+GGG - Chr7:73243897-73243916 None:intergenic 35.0%
AAGAAACTATTACCCCACAT+GGG + Chr7:73243150-73243169 MsG0780040119.01.T01:CDS 35.0%
ATATGATCAAAAGCCCATGT+GGG - Chr7:73243166-73243185 None:intergenic 35.0%
ATGAACATAAAGATGGTTCC+TGG + Chr7:73243480-73243499 MsG0780040119.01.T01:CDS 35.0%
ATGATTCACAACCATCAATG+TGG - Chr7:73244468-73244487 None:intergenic 35.0%
CTTCATCTTGATAAGTACAC+TGG + Chr7:73243217-73243236 MsG0780040119.01.T01:CDS 35.0%
GACAAGGTAACAAAGAACAA+AGG + Chr7:73243717-73243736 MsG0780040119.01.T01:intron 35.0%
GCCAAACAAATATGATCCTT+TGG - Chr7:73243451-73243470 None:intergenic 35.0%
GGGTAATAGTTTCTTCCAAA+TGG - Chr7:73243145-73243164 None:intergenic 35.0%
TATCTGTGAAACTCCTTTGT+TGG - Chr7:73243761-73243780 None:intergenic 35.0%
TTGTAGATGATGTACCAATC+AGG + Chr7:73244287-73244306 MsG0780040119.01.T01:intron 35.0%
! AGTTTGGAATGCTGATGATT+GGG + Chr7:73244375-73244394 MsG0780040119.01.T01:intron 35.0%
! CTTTTGTAACCTGCTATGAA+CGG - Chr7:73244442-73244461 None:intergenic 35.0%
! GTGTAATGGAATGGTGAAAA+GGG - Chr7:73243873-73243892 None:intergenic 35.0%
! TAGATTTAGTGGGTGTGTAA+TGG - Chr7:73243887-73243906 None:intergenic 35.0%
! TGTGTAATGGAATGGTGAAA+AGG - Chr7:73243874-73243893 None:intergenic 35.0%
!! GTGGATTAGAGAAAACTGAT+TGG + Chr7:73244407-73244426 MsG0780040119.01.T01:CDS 35.0%
!! TCTTTGGTTTGATCCAACAA+AGG + Chr7:73243745-73243764 MsG0780040119.01.T01:intron 35.0%
!!! TGTAACTATGTTGGTTTTGC+AGG + Chr7:73244261-73244280 MsG0780040119.01.T01:intron 35.0%
AACACAAGGCAAAAGATGGT+GGG + Chr7:73244510-73244529 MsG0780040119.01.T01:CDS 40.0%
CAAACAAATGTGTTCACTGG+TGG + Chr7:73243695-73243714 MsG0780040119.01.T01:CDS 40.0%
CTTCCAAATGGTACATCAAC+TGG - Chr7:73243133-73243152 None:intergenic 40.0%
GAAGAAACTATTACCCCACA+TGG + Chr7:73243149-73243168 MsG0780040119.01.T01:CDS 40.0%
GATATGATCAAAAGCCCATG+TGG - Chr7:73243167-73243186 None:intergenic 40.0%
GCATCAAGATCACGAAATTC+AGG - Chr7:73244541-73244560 None:intergenic 40.0%
TATGATCAAAAGCCCATGTG+GGG - Chr7:73243165-73243184 None:intergenic 40.0%
TTCAAGAACAGCAAGGACTT+AGG + Chr7:73244312-73244331 MsG0780040119.01.T01:intron 40.0%
TTGCATTCAGGTGGAATTTG+AGG - Chr7:73244640-73244659 None:intergenic 40.0%
! AAGCCAGTTGATGTACCATT+TGG + Chr7:73243127-73243146 MsG0780040119.01.T01:CDS 40.0%
! CAGTTTGGAATGCTGATGAT+TGG + Chr7:73244374-73244393 MsG0780040119.01.T01:intron 40.0%
! TTAGTGGGTGTGTAATGGAA+TGG - Chr7:73243882-73243901 None:intergenic 40.0%
CAACACAAGGCAAAAGATGG+TGG + Chr7:73244509-73244528 MsG0780040119.01.T01:CDS 45.0%
GCCAAATTCTGTGCAACACA+AGG + Chr7:73244496-73244515 MsG0780040119.01.T01:CDS 45.0%
GCCTTGTGTTGCACAGAATT+TGG - Chr7:73244500-73244519 None:intergenic 45.0%
GCTGTTCTTGAACACCTGAT+TGG - Chr7:73244304-73244323 None:intergenic 45.0%
GTGATCTTGATGCTGCTCAA+TGG + Chr7:73244548-73244567 MsG0780040119.01.T01:CDS 45.0%
GTGCAACACAAGGCAAAAGA+TGG + Chr7:73244506-73244525 MsG0780040119.01.T01:CDS 45.0%
TCAATGGCGTAGGCTAAGAT+GGG + Chr7:73244564-73244583 MsG0780040119.01.T01:CDS 45.0%
TCAGGTGTTCAAGAACAGCA+AGG + Chr7:73244305-73244324 MsG0780040119.01.T01:intron 45.0%
! AATGTGTTCACTGGTGGACA+AGG + Chr7:73243701-73243720 MsG0780040119.01.T01:CDS 45.0%
! TCACGGTCTCTTTTGCATTC+AGG - Chr7:73244652-73244671 None:intergenic 45.0%
!!! GGTACTGGTTTTCAGTCCAA+AGG + Chr7:73243432-73243451 MsG0780040119.01.T01:intron 45.0%
ACCTGCTATGAACGGTGCTT+TGG - Chr7:73244434-73244453 None:intergenic 50.0%
ACTGTTCCAGCTGAATCACC+AGG - Chr7:73243501-73243520 None:intergenic 50.0%
ATGGTTCCTGGTGATTCAGC+TGG + Chr7:73243492-73243511 MsG0780040119.01.T01:CDS 50.0%
CTCAATGGCGTAGGCTAAGA+TGG + Chr7:73244563-73244582 MsG0780040119.01.T01:CDS 50.0%
GAGTTCTTGGGGAACAGAAC+AGG + Chr7:73243656-73243675 MsG0780040119.01.T01:CDS 50.0%
GATGATTGGGCAACAAGAGG+TGG + Chr7:73244388-73244407 MsG0780040119.01.T01:CDS 50.0%
GCTGATGATTGGGCAACAAG+AGG + Chr7:73244385-73244404 MsG0780040119.01.T01:CDS 50.0%
TTGATGCTGCTCAATGGCGT+AGG + Chr7:73244554-73244573 MsG0780040119.01.T01:CDS 50.0%
! ACATCAACTGGCTTCCTTGG+AGG - Chr7:73243121-73243140 None:intergenic 50.0%
! CGGTCTCTTTTGCATTCAGG+TGG - Chr7:73244649-73244668 None:intergenic 50.0%
! GGTACATCAACTGGCTTCCT+TGG - Chr7:73243124-73243143 None:intergenic 50.0%
!! TCCAAAGCACCGTTCATAGC+AGG + Chr7:73244430-73244449 MsG0780040119.01.T01:CDS 50.0%
CTTCACTCTGTGCTCCTCCA+AGG + Chr7:73243104-73243123 MsG0780040119.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 73243052 73244678 73243052 ID=MsG0780040119.01;Name=MsG0780040119.01
Chr7 mRNA 73243052 73244678 73243052 ID=MsG0780040119.01.T01;Parent=MsG0780040119.01;Name=MsG0780040119.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|231
Chr7 exon 73243052 73243238 73243052 ID=MsG0780040119.01.T01:exon:13193;Parent=MsG0780040119.01.T01
Chr7 exon 73243433 73243533 73243433 ID=MsG0780040119.01.T01:exon:13194;Parent=MsG0780040119.01.T01
Chr7 exon 73243617 73243722 73243617 ID=MsG0780040119.01.T01:exon:13195;Parent=MsG0780040119.01.T01
Chr7 exon 73244377 73244678 73244377 ID=MsG0780040119.01.T01:exon:13196;Parent=MsG0780040119.01.T01
Chr7 CDS 73243052 73243238 73243052 ID=MsG0780040119.01.T01:cds;Parent=MsG0780040119.01.T01
Chr7 CDS 73243433 73243533 73243433 ID=MsG0780040119.01.T01:cds;Parent=MsG0780040119.01.T01
Chr7 CDS 73243617 73243722 73243617 ID=MsG0780040119.01.T01:cds;Parent=MsG0780040119.01.T01
Chr7 CDS 73244377 73244678 73244377 ID=MsG0780040119.01.T01:cds;Parent=MsG0780040119.01.T01
Gene Sequence

>MsG0780040119.01.T01

ATGAGTTCTTCATTTTGGACCCTTTGTTTGATCTTAGTTTCACTAGTTTCTTCTTCACTCTGTGCTCCTCCAAGGAAGCCAGTTGATGTACCATTTGGAAGAAACTATTACCCCACATGGGCTTTTGATCATATCAAATACTTCAATGGTGGTTCTGAGATTCAGCTTCATCTTGATAAGTACACTGGTACTGGTTTTCAGTCCAAAGGATCATATTTGTTTGGCCACTTCAGTATGAACATAAAGATGGTTCCTGGTGATTCAGCTGGAACAGTCACTGCTTTCTATCTATCTTCACAAAATGCTGAGCATGATGAAATAGATTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTTTACAAACAAATGTGTTCACTGGTGGACAAGTTTGGAATGCTGATGATTGGGCAACAAGAGGTGGATTAGAGAAAACTGATTGGTCCAAAGCACCGTTCATAGCAGGTTACAAAAGTTTCCACATTGATGGTTGTGAATCATCTGTACAAGCCAAATTCTGTGCAACACAAGGCAAAAGATGGTGGGATCAACCTGAATTTCGTGATCTTGATGCTGCTCAATGGCGTAGGCTAAGATGGGTGCGCCAAAAATACACCATTTATAACTATTGCACTGATAGGAAACGTTTGCCTCAAATTCCACCTGAATGCAAAAGAGACCGTGACATATAA

Protein sequence

>MsG0780040119.01.T01

MSSSFWTLCLILVSLVSSSLCAPPRKPVDVPFGRNYYPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGQVWNADDWATRGGLEKTDWSKAPFIAGYKSFHIDGCESSVQAKFCATQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDRKRLPQIPPECKRDRDI*