AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017515.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017515.01.T01 MTR_3g108240 71.069 159 10 1 1 159 1 123 4.82e-71 220
MsG0380017515.01.T01 MTR_3g108240 69.811 159 10 2 1 159 1 121 4.62e-67 210
MsG0380017515.01.T01 MTR_1g047740 48.428 159 38 3 1 159 1 115 1.65e-37 133
MsG0380017515.01.T01 MTR_7g102990 57.143 70 30 0 56 125 16 85 2.64e-21 89.0
MsG0380017515.01.T01 MTR_7g102990 57.143 70 30 0 56 125 16 85 7.81e-21 89.4
MsG0380017515.01.T01 MTR_4g057310 54.688 64 29 0 62 125 19 82 1.73e-17 79.0
MsG0380017515.01.T01 MTR_4g057310 54.688 64 29 0 62 125 16 79 2.86e-17 79.3
MsG0380017515.01.T01 MTR_2g020040 60.000 55 18 1 58 108 12 66 1.08e-14 72.0
MsG0380017515.01.T01 MTR_1g010170 60.465 43 17 0 1 43 1 43 2.73e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017515.01.T01 AT5G25560 43.802 121 42 1 51 171 50 144 5.26e-23 95.5
MsG0380017515.01.T01 AT5G25560 44.628 121 31 2 51 171 50 134 3.48e-22 93.2
MsG0380017515.01.T01 AT5G25560 44.628 121 31 2 51 171 50 134 3.48e-22 93.2
MsG0380017515.01.T01 AT5G25560 44.628 121 31 2 51 171 50 134 3.48e-22 93.2
MsG0380017515.01.T01 AT5G25560 44.628 121 31 2 51 171 50 134 3.48e-22 93.2
MsG0380017515.01.T01 AT5G22920 40.517 116 33 1 44 159 7 86 1.11e-20 87.8
MsG0380017515.01.T01 AT5G22920 40.517 116 33 1 44 159 7 86 1.39e-20 88.6
MsG0380017515.01.T01 AT5G25560 41.322 121 30 3 51 171 50 129 9.75e-17 78.2
MsG0380017515.01.T01 AT3G62970 38.095 105 28 3 55 159 26 93 7.81e-16 75.1
MsG0380017515.01.T01 AT3G62970 38.095 105 28 3 55 159 26 93 1.14e-15 74.3
MsG0380017515.01.T01 AT3G62970 38.095 105 28 3 55 159 26 93 1.48e-15 74.7
MsG0380017515.01.T01 AT5G18650 39.252 107 28 2 52 158 6 75 6.52e-15 72.8

Find 70 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAGAGGATATATGGAGTA+TGG 0.207183 3:+97290365 MsG0380017515.01.T01:CDS
CCTTGATATCTTCTGCTTCC+AGG 0.214322 3:+97291315 MsG0380017515.01.T01:CDS
ACCGGAGAAGGTGTCGTATT+AGG 0.258966 3:+97290483 MsG0380017515.01.T01:CDS
GATTCTCCTATGAGTCTCTA+TGG 0.313725 3:-97291704 None:intergenic
CCGGAGAAGGTGTCGTATTA+GGG 0.346547 3:+97290484 MsG0380017515.01.T01:CDS
TCTGTAGATGTCAACATTAC+CGG 0.349957 3:+97290465 MsG0380017515.01.T01:intron
TTTATGAAAGTGGTGGGGTG+GGG 0.353360 3:+97289132 None:intergenic
CTTGCGAGAGAGAGGATATA+TGG 0.362778 3:+97290358 MsG0380017515.01.T01:CDS
TCTCATATCCTCCAACTCTA+AGG 0.368205 3:+97289279 MsG0380017515.01.T01:five_prime_UTR
ATGCATGTGCTCTTCGTTTG+AGG 0.389072 3:-97290291 None:intergenic
AGTGCAAGCTATCTAGAAAC+AGG 0.408470 3:-97290154 None:intergenic
ATCATTATGACTATTATCCT+TGG 0.408991 3:-97291640 None:intergenic
GCAGTGGTTGTGGAATTTGC+AGG 0.412763 3:+97291437 MsG0380017515.01.T01:CDS
TGCATGTGCTCTTCGTTTGA+GGG 0.425715 3:-97290290 None:intergenic
AGATAACCATAGAGACTCAT+AGG 0.432389 3:+97291698 MsG0380017515.01.T01:CDS
TCATTATGACTATTATCCTT+GGG 0.433687 3:-97291639 None:intergenic
GTTTATGAAAGTGGTGGGGT+GGG 0.434200 3:+97289131 None:intergenic
CAGTACCATTGCAGTGGTTG+TGG 0.446831 3:+97291427 MsG0380017515.01.T01:CDS
TTATGAAAGTGGTGGGGTGG+GGG 0.458323 3:+97289133 None:intergenic
TTCCCGCCATCAGGTCAAAC+AGG 0.469336 3:+97290934 MsG0380017515.01.T01:CDS
AGAATGGCCGGTCTTGTGTT+CGG 0.477658 3:-97289252 None:intergenic
TTCAATTTGAGTGCAATGAC+AGG 0.480009 3:+97290234 MsG0380017515.01.T01:CDS
AGAGAGGATATATGGAGTAT+GGG 0.487300 3:+97290366 MsG0380017515.01.T01:CDS
TGGGTCAGGGGAGCTCTAAT+CGG 0.489772 3:+97289225 MsG0380017515.01.T01:five_prime_UTR
GGATCAAAGAGGAATGAGAA+TGG 0.489861 3:-97289177 None:intergenic
GACACGACATTCCCGCCATC+AGG 0.496414 3:+97290925 MsG0380017515.01.T01:CDS
TATCAATTGCGGTGTGTGCA+TGG 0.500787 3:+97291351 MsG0380017515.01.T01:CDS
TGATACAGTTCTGCTGAACC+TGG 0.503878 3:-97291333 None:intergenic
CCCTAATACGACACCTTCTC+CGG 0.508236 3:-97290484 None:intergenic
AACATACCTGTTTGACCTGA+TGG 0.508780 3:-97290940 None:intergenic
GTTTATACATGCAGGTCACT+AGG 0.515281 3:+97290124 MsG0380017515.01.T01:intron
CTGAAAATAGTGAGCATCAT+GGG 0.515352 3:+97290182 MsG0380017515.01.T01:exon
CCTGGAAGCAGAAGATATCA+AGG 0.526858 3:-97291315 None:intergenic
GAGGATATGAGAGGAGAGAA+TGG 0.527699 3:-97289268 None:intergenic
AGTTTATGAAAGTGGTGGGG+TGG 0.528004 3:+97289130 None:intergenic
GATGTCAACATTACCGGAGA+AGG 0.534230 3:+97290471 MsG0380017515.01.T01:intron
GATCAAAGAGGAATGAGAAT+GGG 0.534348 3:-97289176 None:intergenic
TACCTGTTTGACCTGATGGC+GGG 0.541730 3:-97290936 None:intergenic
CCCAGCAGACAAAACAAAGA+AGG 0.556816 3:-97289206 None:intergenic
TCAAATATCTCATTGCAACA+AGG 0.556883 3:-97290509 None:intergenic
ATCAATGACTTGCGAGAGAG+AGG 0.557776 3:+97290350 MsG0380017515.01.T01:CDS
GCACTCAAATTGAAGAGGCT+CGG 0.562219 3:-97290225 None:intergenic
TCTGAAAATAGTGAGCATCA+TGG 0.568624 3:+97290181 MsG0380017515.01.T01:exon
ACAAAACAAAGAAGGATGGA+TGG 0.570330 3:-97289198 None:intergenic
AGTGAGCATCATGGGAGAAG+TGG 0.570618 3:+97290190 MsG0380017515.01.T01:exon
ATCAATTGCGGTGTGTGCAT+GGG 0.579084 3:+97291352 MsG0380017515.01.T01:CDS
AGGATAATAGTCATAATGAT+CGG 0.580735 3:+97291643 MsG0380017515.01.T01:CDS
ATATGAGAGGAGAGAATGGC+CGG 0.583600 3:-97289264 None:intergenic
ACAACGAACCTTAGAGTTGG+AGG 0.583681 3:-97289287 None:intergenic
GCAGACAAAACAAAGAAGGA+TGG 0.587703 3:-97289202 None:intergenic
CGGAGCTCCGAACACAAGAC+CGG 0.589759 3:+97289245 MsG0380017515.01.T01:five_prime_UTR
TCATTGCACTCAAATTGAAG+AGG 0.591774 3:-97290230 None:intergenic
CAAATATCTCATTGCAACAA+GGG 0.593446 3:-97290508 None:intergenic
GGAACAACGAACCTTAGAGT+TGG 0.597252 3:-97289290 None:intergenic
AAATTCCACAACCACTGCAA+TGG 0.598547 3:-97291432 None:intergenic
ATTGCAGATCTTCAATGAGG+TGG 0.610223 3:-97290974 None:intergenic
AAATATCTCATTGCAACAAG+GGG 0.613018 3:-97290507 None:intergenic
ACTCTGTGAGACTGAACAAG+AGG 0.613028 3:+97291076 MsG0380017515.01.T01:CDS
TTGTCGCCATTGTCACAATG+AGG 0.627282 3:+97290532 MsG0380017515.01.T01:CDS
AGTGCATAGTTGTATTCATG+AGG 0.633928 3:+97291674 MsG0380017515.01.T01:CDS
ATACCTGTTTGACCTGATGG+CGG 0.637436 3:-97290937 None:intergenic
AATAGTCATAATGATCGGCA+AGG 0.639339 3:+97291648 MsG0380017515.01.T01:CDS
CAGCAGAACTGTATCAATTG+CGG 0.643368 3:+97291340 MsG0380017515.01.T01:CDS
AAAATTGCAGATCTTCAATG+AGG 0.646950 3:-97290977 None:intergenic
TCAAACGAAGAGCACATGCA+TGG 0.647060 3:+97290293 MsG0380017515.01.T01:CDS
TTAGAGTTGGAGGATATGAG+AGG 0.650901 3:-97289277 None:intergenic
CAATGACAGGAATCTTATCA+CGG 0.652971 3:+97290247 MsG0380017515.01.T01:CDS
AAGCAGCAGTACCATTGCAG+TGG 0.661184 3:+97291421 MsG0380017515.01.T01:CDS
GAAGGATGGATGGATCAAAG+AGG 0.670375 3:-97289188 None:intergenic
TTACGAATCAGAGAATCCCA+AGG 0.708164 3:+97291623 MsG0380017515.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTATATATTTAA+AGG + Chr3:97289943-97289962 MsG0380017515.01.T01:intron 0.0%
!!! TTTTAATTTCTTTTATAACT+TGG + Chr3:97289366-97289385 MsG0380017515.01.T01:intron 10.0%
!! TTCTAAATGATATAATGAAA+TGG - Chr3:97291266-97291285 None:intergenic 15.0%
!! TTTGTTTAAGTAATTAAGTA+AGG - Chr3:97289779-97289798 None:intergenic 15.0%
!!! AAATCATTAATTTTTTACGA+TGG - Chr3:97290443-97290462 None:intergenic 15.0%
!!! ATTTTTTAATATACAGTTCA+AGG + Chr3:97289678-97289697 MsG0380017515.01.T01:intron 15.0%
!! AAAATAATCGATAATTGATG+TGG - Chr3:97289663-97289682 None:intergenic 20.0%
!! TACAATATAATCCTCATTTA+TGG - Chr3:97290647-97290666 None:intergenic 20.0%
!! TATTTAAGAATTGAGATCAA+TGG - Chr3:97289504-97289523 None:intergenic 20.0%
!! TCTCAAAATTAATAACTGTT+TGG - Chr3:97291199-97291218 None:intergenic 20.0%
!! TGTTATGAAATTACTTATGA+CGG + Chr3:97291149-97291168 MsG0380017515.01.T01:intron 20.0%
!!! ATATTTTCTTTACTATCTCT+TGG + Chr3:97291106-97291125 MsG0380017515.01.T01:intron 20.0%
!!! TGTTATTGCTAAATTGTTTT+CGG + Chr3:97290085-97290104 MsG0380017515.01.T01:intron 20.0%
!!! TTATCAAATGCTTTTTCTTT+AGG - Chr3:97289990-97290009 None:intergenic 20.0%
!!! TTCATTATATCATTTAGAAC+TGG + Chr3:97291267-97291286 MsG0380017515.01.T01:intron 20.0%
! AAGTAAAATAAATCTACCTC+AGG - Chr3:97289572-97289591 None:intergenic 25.0%
! ACTTATGACTTAGAATGAAA+TGG + Chr3:97290800-97290819 MsG0380017515.01.T01:intron 25.0%
! AGATTGAAAAGCAAATAGTA+TGG - Chr3:97290406-97290425 None:intergenic 25.0%
! AGGATAATAGTCATAATGAT+CGG + Chr3:97291643-97291662 MsG0380017515.01.T01:CDS 25.0%
! ATCATTATGACTATTATCCT+TGG - Chr3:97291643-97291662 None:intergenic 25.0%
! CAAAATTAATAACTGTTTGG+AGG - Chr3:97291196-97291215 None:intergenic 25.0%
! CAAATTTCATAGACAACTTT+AGG + Chr3:97290761-97290780 MsG0380017515.01.T01:intron 25.0%
! CTAAATATGTTTATACATGC+AGG + Chr3:97290116-97290135 MsG0380017515.01.T01:intron 25.0%
! GATTGAAAAGCAAATAGTAT+GGG - Chr3:97290405-97290424 None:intergenic 25.0%
! TCAAACACAAATAACAAGTA+TGG - Chr3:97289326-97289345 None:intergenic 25.0%
! TCATTATGACTATTATCCTT+GGG - Chr3:97291642-97291661 None:intergenic 25.0%
! TTTAGCTAACTTAACCAAAT+TGG - Chr3:97291484-97291503 None:intergenic 25.0%
!! GTTATTGCTAAATTGTTTTC+GGG + Chr3:97290086-97290105 MsG0380017515.01.T01:intron 25.0%
!! TTATTAGTTTAAGAAACCTG+AGG + Chr3:97289553-97289572 MsG0380017515.01.T01:intron 25.0%
!!! CAAATTGGTTAGCTTATTAT+CGG - Chr3:97291469-97291488 None:intergenic 25.0%
!!! TAATTTTTTACGATGGCAAA+GGG - Chr3:97290436-97290455 None:intergenic 25.0%
!!! TTAATTTTTTACGATGGCAA+AGG - Chr3:97290437-97290456 None:intergenic 25.0%
AAAATTGCAGATCTTCAATG+AGG - Chr3:97290980-97290999 None:intergenic 30.0%
AAATATCTCATTGCAACAAG+GGG - Chr3:97290510-97290529 None:intergenic 30.0%
AACAAGTATGGAAGAAAGTA+AGG - Chr3:97289314-97289333 None:intergenic 30.0%
AGAAAAAGTCATATCAACCT+TGG - Chr3:97291538-97291557 None:intergenic 30.0%
CAAATATCTCATTGCAACAA+GGG - Chr3:97290511-97290530 None:intergenic 30.0%
CGATAATAAGCTAACCAATT+TGG + Chr3:97291467-97291486 MsG0380017515.01.T01:intron 30.0%
CTGTTCAGATATTTCATGTA+TGG + Chr3:97290603-97290622 MsG0380017515.01.T01:intron 30.0%
GAAAAAGTCATATCAACCTT+GGG - Chr3:97291537-97291556 None:intergenic 30.0%
GAACATATCACCTGAAAAAT+TGG - Chr3:97291056-97291075 None:intergenic 30.0%
TAAAACCATGAACATGAACA+TGG - Chr3:97289599-97289618 None:intergenic 30.0%
TCAAATATCTCATTGCAACA+AGG - Chr3:97290512-97290531 None:intergenic 30.0%
TTAAGACTCTCGAATTTCTT+GGG + Chr3:97290676-97290695 MsG0380017515.01.T01:intron 30.0%
TTCAGATATTTCATGTATGG+TGG + Chr3:97290606-97290625 MsG0380017515.01.T01:intron 30.0%
! AATGAATGCTCCAATTTTTC+AGG + Chr3:97291043-97291062 MsG0380017515.01.T01:CDS 30.0%
! ATGGATTATAGGCAATAAGT+CGG - Chr3:97289637-97289656 None:intergenic 30.0%
!! ATTCTTTTGATTCATGTAGC+TGG + Chr3:97289405-97289424 MsG0380017515.01.T01:intron 30.0%
!!! CTGTTGTTATTTTTCTGATG+AGG + Chr3:97291013-97291032 MsG0380017515.01.T01:CDS 30.0%
!!! TCTTGTTTTTCCTTTTCTCT+TGG + Chr3:97291557-97291576 MsG0380017515.01.T01:intron 30.0%
AAAAATTCAAGGTCTGAACC+TGG - Chr3:97290021-97290040 None:intergenic 35.0%
AATAGTCATAATGATCGGCA+AGG + Chr3:97291648-97291667 MsG0380017515.01.T01:CDS 35.0%
AATGTATTGTTCCTATCCCA+AGG + Chr3:97291518-97291537 MsG0380017515.01.T01:intron 35.0%
ACAAAACAAAGAAGGATGGA+TGG - Chr3:97289201-97289220 None:intergenic 35.0%
AGAGAGGATATATGGAGTAT+GGG + Chr3:97290366-97290385 MsG0380017515.01.T01:CDS 35.0%
AGATAACCATAGAGACTCAT+AGG + Chr3:97291698-97291717 MsG0380017515.01.T01:CDS 35.0%
AGTGCATAGTTGTATTCATG+AGG + Chr3:97291674-97291693 MsG0380017515.01.T01:CDS 35.0%
CAATAAGTCGGTGACATATT+TGG - Chr3:97289625-97289644 None:intergenic 35.0%
CAATGACAGGAATCTTATCA+CGG + Chr3:97290247-97290266 MsG0380017515.01.T01:CDS 35.0%
CACAGTCTAGTATTTCATGA+TGG + Chr3:97290572-97290591 MsG0380017515.01.T01:intron 35.0%
CATTTGATAAGTAACTGTCC+AGG + Chr3:97290000-97290019 MsG0380017515.01.T01:intron 35.0%
CTGAAAATAGTGAGCATCAT+GGG + Chr3:97290182-97290201 MsG0380017515.01.T01:exon 35.0%
CTTATTGCTTGCCATAAATG+AGG + Chr3:97290633-97290652 MsG0380017515.01.T01:intron 35.0%
GATAACCATAGAGACTCATA+GGG + Chr3:97291699-97291718 MsG0380017515.01.T01:CDS 35.0%
GATCAAAGAGGAATGAGAAT+GGG - Chr3:97289179-97289198 None:intergenic 35.0%
GTTAAGACTCTCGAATTTCT+TGG + Chr3:97290675-97290694 MsG0380017515.01.T01:intron 35.0%
TACAACCATGTTCATGTTCA+TGG + Chr3:97289591-97289610 MsG0380017515.01.T01:intron 35.0%
TCATTGCACTCAAATTGAAG+AGG - Chr3:97290233-97290252 None:intergenic 35.0%
TCGATAATTGATGTGGCATA+TGG - Chr3:97289656-97289675 None:intergenic 35.0%
TCTGAAAATAGTGAGCATCA+TGG + Chr3:97290181-97290200 MsG0380017515.01.T01:exon 35.0%
TCTGTAGATGTCAACATTAC+CGG + Chr3:97290465-97290484 MsG0380017515.01.T01:intron 35.0%
TTCAATTTGAGTGCAATGAC+AGG + Chr3:97290234-97290253 MsG0380017515.01.T01:CDS 35.0%
! AGGTTCAGACCTTGAATTTT+TGG + Chr3:97290020-97290039 MsG0380017515.01.T01:intron 35.0%
! GCAAGTCATTGATCTTTTTG+TGG - Chr3:97290343-97290362 None:intergenic 35.0%
! TCATTGATCTTTTTGTGGTC+TGG - Chr3:97290338-97290357 None:intergenic 35.0%
! TGATGTGGCATATGGATTAT+AGG - Chr3:97289648-97289667 None:intergenic 35.0%
! TGTTGCTTAACCAAGAGAAA+AGG - Chr3:97291570-97291589 None:intergenic 35.0%
!!! AGACCTTGAATTTTTGGAAC+AGG + Chr3:97290026-97290045 MsG0380017515.01.T01:intron 35.0%
!!! CTTGAATTTTTGGAACAGGT+CGG + Chr3:97290030-97290049 MsG0380017515.01.T01:intron 35.0%
!!! TGCATGGGCAATTATTTTTG+CGG + Chr3:97291367-97291386 MsG0380017515.01.T01:CDS 35.0%
AAATTCCACAACCACTGCAA+TGG - Chr3:97291435-97291454 None:intergenic 40.0%
AACATACCTGTTTGACCTGA+TGG - Chr3:97290943-97290962 None:intergenic 40.0%
AGTCATATCAACCTTGGGAT+AGG - Chr3:97291532-97291551 None:intergenic 40.0%
AGTGCAAGCTATCTAGAAAC+AGG - Chr3:97290157-97290176 None:intergenic 40.0%
ATTGCAGATCTTCAATGAGG+TGG - Chr3:97290977-97290996 None:intergenic 40.0%
CAGCAGAACTGTATCAATTG+CGG + Chr3:97291340-97291359 MsG0380017515.01.T01:CDS 40.0%
CGACCTGTTCCAAAAATTCA+AGG - Chr3:97290032-97290051 None:intergenic 40.0%
GAGAGAGGATATATGGAGTA+TGG + Chr3:97290365-97290384 MsG0380017515.01.T01:CDS 40.0%
GCAGACAAAACAAAGAAGGA+TGG - Chr3:97289205-97289224 None:intergenic 40.0%
GGATCAAAGAGGAATGAGAA+TGG - Chr3:97289180-97289199 None:intergenic 40.0%
GTTTATACATGCAGGTCACT+AGG + Chr3:97290124-97290143 MsG0380017515.01.T01:intron 40.0%
TCTCATATCCTCCAACTCTA+AGG + Chr3:97289279-97289298 MsG0380017515.01.T01:five_prime_UTR 40.0%
TGTCAGACACTTTAGTAGAC+TGG + Chr3:97289525-97289544 MsG0380017515.01.T01:intron 40.0%
TTACGAATCAGAGAATCCCA+AGG + Chr3:97291623-97291642 MsG0380017515.01.T01:intron 40.0%
TTAGAGTTGGAGGATATGAG+AGG - Chr3:97289280-97289299 None:intergenic 40.0%
! CTGCAGCATCACTTTCATTT+TGG + Chr3:97290846-97290865 MsG0380017515.01.T01:intron 40.0%
! CTTTTGCCTCATTGTGACAA+TGG - Chr3:97290541-97290560 None:intergenic 40.0%
! TCTTTTTGTGGTCTGGTGAT+TGG - Chr3:97290331-97290350 None:intergenic 40.0%
!!! CCTTCTTTGTTTTGTCTGCT+GGG + Chr3:97289206-97289225 MsG0380017515.01.T01:five_prime_UTR 40.0%
!!! GCATGGGCAATTATTTTTGC+GGG + Chr3:97291368-97291387 MsG0380017515.01.T01:CDS 40.0%
!!! TCCTTCTTTGTTTTGTCTGC+TGG + Chr3:97289205-97289224 MsG0380017515.01.T01:five_prime_UTR 40.0%
ACAACGAACCTTAGAGTTGG+AGG - Chr3:97289290-97289309 None:intergenic 45.0%
ACTCTGTGAGACTGAACAAG+AGG + Chr3:97291076-97291095 MsG0380017515.01.T01:CDS 45.0%
ATACCTGTTTGACCTGATGG+CGG - Chr3:97290940-97290959 None:intergenic 45.0%
ATATGAGAGGAGAGAATGGC+CGG - Chr3:97289267-97289286 None:intergenic 45.0%
ATCAATTGCGGTGTGTGCAT+GGG + Chr3:97291352-97291371 MsG0380017515.01.T01:CDS 45.0%
ATGCATGTGCTCTTCGTTTG+AGG - Chr3:97290294-97290313 None:intergenic 45.0%
CCCAGCAGACAAAACAAAGA+AGG - Chr3:97289209-97289228 None:intergenic 45.0%
CCTGGAAGCAGAAGATATCA+AGG - Chr3:97291318-97291337 None:intergenic 45.0%
CCTTGATATCTTCTGCTTCC+AGG + Chr3:97291315-97291334 MsG0380017515.01.T01:CDS 45.0%
CTTGCGAGAGAGAGGATATA+TGG + Chr3:97290358-97290377 MsG0380017515.01.T01:CDS 45.0%
GAAGGATGGATGGATCAAAG+AGG - Chr3:97289191-97289210 None:intergenic 45.0%
GAGGATATGAGAGGAGAGAA+TGG - Chr3:97289271-97289290 None:intergenic 45.0%
GATGTCAACATTACCGGAGA+AGG + Chr3:97290471-97290490 MsG0380017515.01.T01:intron 45.0%
GCACTCAAATTGAAGAGGCT+CGG - Chr3:97290228-97290247 None:intergenic 45.0%
GGAACAACGAACCTTAGAGT+TGG - Chr3:97289293-97289312 None:intergenic 45.0%
TATCAATTGCGGTGTGTGCA+TGG + Chr3:97291351-97291370 MsG0380017515.01.T01:CDS 45.0%
TGATACAGTTCTGCTGAACC+TGG - Chr3:97291336-97291355 None:intergenic 45.0%
TGCATGTGCTCTTCGTTTGA+GGG - Chr3:97290293-97290312 None:intergenic 45.0%
TTGTCGCCATTGTCACAATG+AGG + Chr3:97290532-97290551 MsG0380017515.01.T01:CDS 45.0%
! ATCAATGACTTGCGAGAGAG+AGG + Chr3:97290350-97290369 MsG0380017515.01.T01:CDS 45.0%
! TCAAACGAAGAGCACATGCA+TGG + Chr3:97290293-97290312 MsG0380017515.01.T01:CDS 45.0%
!! TTGTTTTGTCTGCTGGGTCA+GGG + Chr3:97289212-97289231 MsG0380017515.01.T01:five_prime_UTR 45.0%
!!! TTTGTTTTGTCTGCTGGGTC+AGG + Chr3:97289211-97289230 MsG0380017515.01.T01:five_prime_UTR 45.0%
!!! AAAATAACTTTTTTTTTTTA+AGG - Chr3:97289721-97289740 None:intergenic 5.0%
AAGCAGCAGTACCATTGCAG+TGG + Chr3:97291421-97291440 MsG0380017515.01.T01:CDS 50.0%
AGTGAGCATCATGGGAGAAG+TGG + Chr3:97290190-97290209 MsG0380017515.01.T01:exon 50.0%
CAGTACCATTGCAGTGGTTG+TGG + Chr3:97291427-97291446 MsG0380017515.01.T01:CDS 50.0%
CCCTAATACGACACCTTCTC+CGG - Chr3:97290487-97290506 None:intergenic 50.0%
GCAGTGGTTGTGGAATTTGC+AGG + Chr3:97291437-97291456 MsG0380017515.01.T01:CDS 50.0%
TACCTGTTTGACCTGATGGC+GGG - Chr3:97290939-97290958 None:intergenic 50.0%
! AGAATGGCCGGTCTTGTGTT+CGG - Chr3:97289255-97289274 None:intergenic 50.0%
! TGTTTTGTCTGCTGGGTCAG+GGG + Chr3:97289213-97289232 MsG0380017515.01.T01:five_prime_UTR 50.0%
!! ACCGGAGAAGGTGTCGTATT+AGG + Chr3:97290483-97290502 MsG0380017515.01.T01:CDS 50.0%
!! CCGGAGAAGGTGTCGTATTA+GGG + Chr3:97290484-97290503 MsG0380017515.01.T01:CDS 50.0%
TTCCCGCCATCAGGTCAAAC+AGG + Chr3:97290934-97290953 MsG0380017515.01.T01:CDS 55.0%
! TGGGTCAGGGGAGCTCTAAT+CGG + Chr3:97289225-97289244 MsG0380017515.01.T01:five_prime_UTR 55.0%
CGGAGCTCCGAACACAAGAC+CGG + Chr3:97289245-97289264 MsG0380017515.01.T01:five_prime_UTR 60.0%
GACACGACATTCCCGCCATC+AGG + Chr3:97290925-97290944 MsG0380017515.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 97289143 97291719 97289143 ID=MsG0380017515.01;Name=MsG0380017515.01
Chr3 mRNA 97289143 97291719 97289143 ID=MsG0380017515.01.T01;Parent=MsG0380017515.01;Name=MsG0380017515.01.T01;_AED=0.47;_eAED=0.54;_QI=220|0.6|0.5|1|0.6|0.33|6|0|245
Chr3 exon 97289143 97289300 97289143 ID=MsG0380017515.01.T01:exon:16280;Parent=MsG0380017515.01.T01
Chr3 exon 97290138 97290387 97290138 ID=MsG0380017515.01.T01:exon:16281;Parent=MsG0380017515.01.T01
Chr3 exon 97290472 97290559 97290472 ID=MsG0380017515.01.T01:exon:16282;Parent=MsG0380017515.01.T01
Chr3 exon 97290897 97291097 97290897 ID=MsG0380017515.01.T01:exon:16283;Parent=MsG0380017515.01.T01
Chr3 exon 97291284 97291458 97291284 ID=MsG0380017515.01.T01:exon:16284;Parent=MsG0380017515.01.T01
Chr3 exon 97291634 97291719 97291634 ID=MsG0380017515.01.T01:exon:16285;Parent=MsG0380017515.01.T01
Chr3 five_prime_UTR 97289143 97289300 97289143 ID=MsG0380017515.01.T01:five_prime_utr;Parent=MsG0380017515.01.T01
Chr3 five_prime_UTR 97290138 97290199 97290138 ID=MsG0380017515.01.T01:five_prime_utr;Parent=MsG0380017515.01.T01
Chr3 CDS 97290200 97290387 97290200 ID=MsG0380017515.01.T01:cds;Parent=MsG0380017515.01.T01
Chr3 CDS 97290472 97290559 97290472 ID=MsG0380017515.01.T01:cds;Parent=MsG0380017515.01.T01
Chr3 CDS 97290897 97291097 97290897 ID=MsG0380017515.01.T01:cds;Parent=MsG0380017515.01.T01
Chr3 CDS 97291284 97291458 97291284 ID=MsG0380017515.01.T01:cds;Parent=MsG0380017515.01.T01
Chr3 CDS 97291634 97291719 97291634 ID=MsG0380017515.01.T01:cds;Parent=MsG0380017515.01.T01
Gene Sequence

>MsG0380017515.01.T01

ATGGGAGAAGTGGCAGTAATGCACTCCGAGCCTCTTCAATTTGAGTGCAATGACAGGAATCTTATCACGGAGAAAGATGTGCATAATCTACCCTCAAACGAAGAGCACATGCATGGCGAAAAGTCTAGCCAATCACCAGACCACAAAAAGATCAATGACTTGCGAGAGAGAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGGTGTCGTATTAGGGCCCCTTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAACAGCATCGACGTCAATCAGAAGCATAGACACGACATTCCCGCCATCAGGTCAAACAGGTATGTTCGTCTATTTTACCACCTCATTGAAGATCTGCAATTTTGTGATTGCTTTTGCTGTTGTTATTTTTCTGATGAGGCAATGCTAATGAATGCTCCAATTTTTCAGGTGATATGTTCACTCTGTGAGACTGAACAAGAGAACTGGCTTTTAAAACTTCACTTTTTTCTTGCCTTGATATCTTCTGCTTCCAGGTTCAGCAGAACTGTATCAATTGCGGTGTGTGCATGGGCAATTATTTTTGCGGGACATGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTACCATTGCAGTGGTTGTGGAATTTGCAGAGAATCCCAAGGATAATAGTCATAATGATCGGCAAGGAAGAGTGCATAGTTGTATTCATGAGGAAGATAACCATAGAGACTCATAG
Protein sequence

>MsG0380017515.01.T01

MGEVAVMHSEPLQFECNDRNLITEKDVHNLPSNEEHMHGEKSSQSPDHKKINDLRERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSIDVNQKHRHDIPAIRSNRYVRLFYHLIEDLQFCDCFCCCYFSDEAMLMNAPIFQVICSLCETEQENWLLKLHFFLALISSASRFSRTVSIAVCAWAIIFAGHVSSLMMMYLSSSTIAVVVEFAENPKDNSHNDRQGRVHSCIHEEDNHRDS*