AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043786.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043786.01.T01 MTR_8g041390 98.214 168 3 0 1 168 127 294 1.99e-119 343
MsG0880043786.01.T01 MTR_3g012420 64.881 168 56 1 1 168 131 295 1.07e-74 229
MsG0880043786.01.T01 MTR_1g030580 44.048 168 89 2 1 168 130 292 8.49e-45 152
MsG0880043786.01.T01 MTR_3g072500 42.262 168 94 2 1 168 31 195 2.77e-44 148
MsG0880043786.01.T01 MTR_3g072500 42.262 168 94 2 1 168 134 298 4.69e-43 147
MsG0880043786.01.T01 MTR_3g072520 45.294 170 89 4 1 169 123 289 2.03e-42 145
MsG0880043786.01.T01 MTR_3g072530 39.412 170 96 3 1 168 128 292 6.77e-42 144
MsG0880043786.01.T01 MTR_1g068630 44.970 169 85 4 1 168 129 290 9.72e-42 143
MsG0880043786.01.T01 MTR_1g030600 41.379 174 90 4 1 169 132 298 5.11e-41 142
MsG0880043786.01.T01 MTR_0096s0100 42.690 171 89 4 1 169 132 295 1.17e-40 140
MsG0880043786.01.T01 MTR_3g072560 42.262 168 90 3 1 168 132 292 2.27e-39 138
MsG0880043786.01.T01 MTR_7g100050 43.787 169 89 3 1 168 127 290 1.59e-38 135
MsG0880043786.01.T01 MTR_8g076800 58.182 110 40 2 54 161 139 244 2.13e-36 127
MsG0880043786.01.T01 MTR_1g051120 37.500 168 99 3 2 168 131 293 1.36e-30 114
MsG0880043786.01.T01 MTR_1g074120 37.059 170 99 3 1 169 130 292 2.66e-30 113
MsG0880043786.01.T01 MTR_3g095420 32.143 168 113 1 1 168 123 289 1.41e-29 111
MsG0880043786.01.T01 MTR_1g052205 35.028 177 90 6 1 169 14 173 4.42e-29 107
MsG0880043786.01.T01 MTR_4g094340 36.257 171 99 6 2 168 57 221 8.55e-29 108
MsG0880043786.01.T01 MTR_1g074020 37.278 169 98 4 1 168 127 288 1.23e-28 108
MsG0880043786.01.T01 MTR_1g074070 36.905 168 98 3 2 168 131 291 1.47e-28 108
MsG0880043786.01.T01 MTR_3g095460 35.465 172 101 3 1 168 119 284 1.49e-28 108
MsG0880043786.01.T01 MTR_6g007470 56.322 87 37 1 75 161 99 184 2.23e-28 105
MsG0880043786.01.T01 MTR_4g094340 36.257 171 99 6 2 168 123 287 2.52e-28 108
MsG0880043786.01.T01 MTR_4g094340 36.257 171 99 6 2 168 141 305 3.51e-28 108
MsG0880043786.01.T01 MTR_6g036450 33.728 169 108 3 1 168 129 294 3.85e-28 107
MsG0880043786.01.T01 MTR_3g095440 33.529 170 108 3 1 168 121 287 6.97e-28 107
MsG0880043786.01.T01 MTR_1g074160 34.911 169 102 3 1 168 127 288 1.68e-27 105
MsG0880043786.01.T01 MTR_3g095450 32.941 170 109 3 1 168 121 287 2.14e-27 105
MsG0880043786.01.T01 MTR_3g072500 37.681 138 83 2 1 138 134 268 5.80e-27 103
MsG0880043786.01.T01 MTR_8g006010 36.257 171 100 4 1 169 124 287 1.39e-26 103
MsG0880043786.01.T01 MTR_8g006050 34.706 170 104 4 1 168 109 273 3.62e-26 102
MsG0880043786.01.T01 MTR_2g016710 33.333 168 105 3 1 168 122 282 3.66e-26 101
MsG0880043786.01.T01 MTR_2g016710 33.333 168 105 3 1 168 122 282 4.17e-26 102
MsG0880043786.01.T01 MTR_8g092650 32.948 173 107 4 1 168 41 209 4.18e-26 100
MsG0880043786.01.T01 MTR_6g081840 33.136 169 112 1 1 169 124 291 7.49e-26 101
MsG0880043786.01.T01 MTR_8g092650 32.948 173 107 4 1 168 119 287 2.12e-25 100
MsG0880043786.01.T01 MTR_2g007960 32.759 174 106 6 2 168 127 296 3.42e-24 97.4
MsG0880043786.01.T01 MTR_1g114210 31.548 168 111 3 1 168 123 286 3.44e-24 97.1
MsG0880043786.01.T01 MTR_2g065550 32.948 173 102 4 1 169 126 288 7.79e-24 96.3
MsG0880043786.01.T01 MTR_1g038560 30.994 171 108 4 1 168 115 278 1.29e-23 95.1
MsG0880043786.01.T01 MTR_4g094342 31.429 175 108 4 1 169 127 295 2.49e-23 94.7
MsG0880043786.01.T01 MTR_5g034970 31.250 176 102 4 1 169 121 284 3.46e-23 94.0
MsG0880043786.01.T01 MTR_8g006090 35.119 168 104 3 1 168 46 208 4.34e-23 92.8
MsG0880043786.01.T01 MTR_8g006090 35.329 167 103 3 1 167 126 287 7.14e-23 92.8
MsG0880043786.01.T01 MTR_8g006090 35.119 168 104 3 1 168 126 288 1.21e-22 92.8
MsG0880043786.01.T01 MTR_1g073990 37.059 170 98 5 1 168 130 292 1.53e-22 92.4
MsG0880043786.01.T01 MTR_1g070175 30.357 168 108 2 1 168 130 288 1.54e-22 92.8
MsG0880043786.01.T01 MTR_5g034980 29.545 176 105 4 1 169 121 284 2.03e-22 92.0
MsG0880043786.01.T01 MTR_5g034910 32.000 175 100 4 1 168 121 283 2.04e-22 92.0
MsG0880043786.01.T01 MTR_2g027030 31.138 167 112 3 2 168 127 290 2.22e-22 92.4
MsG0880043786.01.T01 MTR_2g007970 33.533 167 108 3 2 168 127 290 5.06e-22 91.7
MsG0880043786.01.T01 MTR_8g006120 33.333 168 107 3 1 168 125 287 8.74e-22 90.9
MsG0880043786.01.T01 MTR_3g112480 32.022 178 111 3 1 169 7 183 1.74e-21 88.6
MsG0880043786.01.T01 MTR_2g007990 34.118 170 106 3 1 168 129 294 1.75e-21 90.1
MsG0880043786.01.T01 MTR_7g111830 29.240 171 117 2 2 169 122 291 4.07e-21 89.0
MsG0880043786.01.T01 MTR_3g112480 32.022 178 111 3 1 169 79 255 4.62e-21 88.2
MsG0880043786.01.T01 MTR_3g112480 32.022 178 111 3 1 169 134 310 8.50e-21 88.2
MsG0880043786.01.T01 MTR_4g094360 30.588 170 112 4 1 168 81 246 8.92e-21 87.8
MsG0880043786.01.T01 MTR_4g094360 30.588 170 112 4 1 168 128 293 1.28e-20 86.7
MsG0880043786.01.T01 MTR_4g106720 28.571 168 115 3 1 168 126 288 1.31e-20 87.4
MsG0880043786.01.T01 MTR_4g094352 33.333 174 108 5 1 169 127 297 1.47e-20 87.4
MsG0880043786.01.T01 MTR_5g034930 30.588 170 111 3 1 169 120 283 1.53e-20 87.0
MsG0880043786.01.T01 MTR_4g129650 30.000 170 105 4 2 168 19 177 1.78e-20 85.5
MsG0880043786.01.T01 MTR_4g094360 30.588 170 112 4 1 168 128 293 1.96e-20 87.0
MsG0880043786.01.T01 MTR_3g072530 27.907 172 85 4 1 137 128 295 2.84e-20 85.9
MsG0880043786.01.T01 MTR_1g023180 30.319 188 105 5 4 169 133 316 5.53e-20 85.9
MsG0880043786.01.T01 MTR_4g129650 30.000 170 105 4 2 168 126 284 1.06e-19 85.1
MsG0880043786.01.T01 MTR_0103s0090 31.977 172 105 6 1 169 34 196 3.42e-19 82.4
MsG0880043786.01.T01 MTR_1g014510 28.571 168 117 2 1 168 126 290 4.30e-19 83.6
MsG0880043786.01.T01 MTR_2g007260 35.088 171 107 3 1 168 128 297 4.73e-19 83.6
MsG0880043786.01.T01 MTR_0103s0090 31.977 172 105 6 1 169 125 287 7.11e-19 82.8
MsG0880043786.01.T01 MTR_4g094362 28.402 169 116 3 1 168 128 292 7.97e-19 82.8
MsG0880043786.01.T01 MTR_2g102340 28.000 175 107 5 1 168 126 288 9.16e-19 82.4
MsG0880043786.01.T01 MTR_1g074160 32.609 138 85 3 2 138 128 258 1.91e-18 80.5
MsG0880043786.01.T01 MTR_5g021160 28.994 169 115 3 2 169 39 203 4.01e-18 79.7
MsG0880043786.01.T01 MTR_5g021160 28.994 169 115 3 2 169 122 286 9.37e-18 79.3
MsG0880043786.01.T01 MTR_4g094340 34.752 141 82 6 2 138 123 257 1.44e-17 77.8
MsG0880043786.01.T01 MTR_4g094340 34.752 141 82 6 2 138 141 275 1.70e-17 77.8
MsG0880043786.01.T01 MTR_6g007760 33.529 170 106 4 1 169 125 288 1.92e-17 78.2
MsG0880043786.01.T01 MTR_3g090550 29.762 168 111 2 1 168 119 279 2.47e-17 78.2
MsG0880043786.01.T01 MTR_1g030400 22.941 170 128 2 2 169 122 290 2.95e-16 75.5
MsG0880043786.01.T01 MTR_3g095440 30.000 140 93 3 1 138 121 257 6.39e-16 73.6
MsG0880043786.01.T01 MTR_5g034980 28.090 178 100 7 1 171 121 277 1.92e-15 72.4
MsG0880043786.01.T01 MTR_3g072500 37.931 87 52 1 1 87 134 218 4.48e-15 70.5
MsG0880043786.01.T01 MTR_6g007743 26.036 169 117 2 1 169 126 286 2.17e-14 70.1
MsG0880043786.01.T01 MTR_6g007747 26.036 169 117 3 1 169 124 284 3.18e-14 69.7
MsG0880043786.01.T01 MTR_6g007740 26.036 169 117 3 1 169 126 286 4.02e-14 69.7
MsG0880043786.01.T01 MTR_8g006090 36.301 146 85 4 1 146 46 183 4.08e-14 67.8
MsG0880043786.01.T01 MTR_5g034990 29.586 169 109 4 1 168 127 286 4.46e-14 68.9
MsG0880043786.01.T01 MTR_5g025290 29.121 182 110 6 2 169 126 302 7.89e-14 68.6
MsG0880043786.01.T01 MTR_8g006090 36.301 146 85 4 1 146 126 263 8.23e-14 68.2
MsG0880043786.01.T01 MTR_5g025290 29.121 182 110 6 2 169 154 330 8.44e-14 68.6
MsG0880043786.01.T01 MTR_5g089390 24.405 168 117 2 1 168 128 285 1.26e-13 67.8
MsG0880043786.01.T01 MTR_6g007757 26.036 169 117 3 1 169 127 287 5.76e-13 65.9
MsG0880043786.01.T01 MTR_1g068720 42.697 89 47 4 82 167 93 180 6.85e-13 64.7
MsG0880043786.01.T01 MTR_6g007753 26.627 169 116 3 1 169 86 246 8.71e-13 65.9
MsG0880043786.01.T01 MTR_6g007753 26.627 169 116 3 1 169 410 570 8.71e-13 65.9
MsG0880043786.01.T01 MTR_5g025340 30.387 181 111 5 1 169 124 301 9.27e-13 65.5
MsG0880043786.01.T01 MTR_3g019050 22.619 168 126 2 1 168 132 295 3.19e-12 63.9
MsG0880043786.01.T01 MTR_6g007750 28.402 169 114 3 1 169 128 289 1.29e-11 62.0
MsG0880043786.01.T01 MTR_5g025330 28.415 183 112 4 1 169 123 300 3.37e-11 61.2
MsG0880043786.01.T01 MTR_5g021160 27.815 151 101 4 2 148 122 268 6.13e-11 59.7
MsG0880043786.01.T01 MTR_2g102340 26.207 145 88 5 1 138 152 284 8.56e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043786.01.T01 AT5G07050 62.573 171 61 1 1 168 131 301 4.95e-73 225
MsG0880043786.01.T01 AT2G40900 47.619 168 78 2 1 168 124 281 1.35e-53 175
MsG0880043786.01.T01 AT3G56620 47.929 169 77 3 1 168 124 282 8.14e-48 159
MsG0880043786.01.T01 AT4G08290 42.857 168 93 2 1 168 126 290 2.82e-47 158
MsG0880043786.01.T01 AT1G21890 42.197 173 94 2 1 168 124 295 1.02e-43 148
MsG0880043786.01.T01 AT1G21890 42.197 173 94 2 1 168 124 295 1.73e-43 148
MsG0880043786.01.T01 AT2G37460 42.604 169 89 3 1 168 128 289 6.61e-42 144
MsG0880043786.01.T01 AT2G39510 41.420 169 93 4 1 168 121 284 1.70e-41 143
MsG0880043786.01.T01 AT1G44800 39.286 168 97 2 1 168 124 286 2.34e-40 140
MsG0880043786.01.T01 AT4G08300 37.278 169 102 3 1 168 124 289 7.70e-36 128
MsG0880043786.01.T01 AT2G37450 41.420 169 91 3 1 168 29 190 4.55e-35 124
MsG0880043786.01.T01 AT2G37450 41.420 169 91 3 1 168 62 223 1.26e-34 123
MsG0880043786.01.T01 AT2G37450 41.420 169 91 3 1 168 101 262 2.78e-34 123
MsG0880043786.01.T01 AT5G13670 39.053 169 99 4 1 168 121 286 1.95e-32 119
MsG0880043786.01.T01 AT4G08290 38.686 137 81 2 1 137 126 259 2.49e-31 114
MsG0880043786.01.T01 AT5G64700 30.233 172 112 3 1 167 121 289 1.85e-30 114
MsG0880043786.01.T01 AT4G30420 37.126 167 100 3 2 168 116 277 3.92e-28 107
MsG0880043786.01.T01 AT4G30420 37.126 167 100 3 2 168 126 287 5.00e-28 107
MsG0880043786.01.T01 AT3G30340 32.738 168 107 3 2 168 125 287 1.93e-25 100
MsG0880043786.01.T01 AT1G75500 35.429 175 103 5 1 169 133 303 6.06e-25 99.8
MsG0880043786.01.T01 AT1G75500 35.429 175 103 5 1 169 133 303 6.06e-25 99.8
MsG0880043786.01.T01 AT3G53210 30.769 169 113 2 1 169 66 230 1.62e-23 94.7
MsG0880043786.01.T01 AT1G09380 29.341 167 117 1 2 168 122 287 1.98e-23 95.1
MsG0880043786.01.T01 AT3G53210 30.769 169 113 2 1 169 123 287 3.65e-23 94.4
MsG0880043786.01.T01 AT3G18200 33.918 171 102 5 1 169 18 179 1.03e-21 89.0
MsG0880043786.01.T01 AT3G18200 33.918 171 102 5 1 169 148 309 8.84e-21 88.2
MsG0880043786.01.T01 AT4G01440 27.219 169 116 3 1 168 15 177 8.84e-20 83.6
MsG0880043786.01.T01 AT4G01440 27.219 169 116 3 1 168 15 177 8.84e-20 83.6
MsG0880043786.01.T01 AT4G01440 27.219 169 116 3 1 168 123 285 3.65e-19 83.6
MsG0880043786.01.T01 AT4G01440 27.219 169 116 3 1 168 123 285 3.88e-19 82.8
MsG0880043786.01.T01 AT5G64700 26.573 143 97 3 1 138 121 260 8.92e-19 81.3
MsG0880043786.01.T01 AT4G01430 29.091 165 113 2 5 168 127 288 2.78e-18 80.9
MsG0880043786.01.T01 AT4G01430 29.091 165 113 2 5 168 127 288 2.78e-18 80.5
MsG0880043786.01.T01 AT1G68170 27.381 168 120 2 1 168 126 291 1.08e-17 79.3
MsG0880043786.01.T01 AT1G68170 27.381 168 120 2 1 168 116 281 1.29e-17 79.0
MsG0880043786.01.T01 AT3G28100 30.588 170 113 3 1 169 127 292 1.83e-17 78.6
MsG0880043786.01.T01 AT3G28070 29.762 168 115 2 1 168 1 165 1.90e-17 77.0
MsG0880043786.01.T01 AT4G01430 29.221 154 105 2 16 168 1 151 2.13e-17 77.0
MsG0880043786.01.T01 AT1G43650 27.976 168 113 3 1 168 120 279 2.33e-17 78.2
MsG0880043786.01.T01 AT1G25270 28.402 169 118 3 1 169 116 281 2.96e-17 78.2
MsG0880043786.01.T01 AT3G28070 29.586 169 116 2 1 169 38 203 3.78e-17 77.0
MsG0880043786.01.T01 AT3G28070 29.586 169 116 2 1 169 130 295 7.44e-17 76.6
MsG0880043786.01.T01 AT3G30340 30.263 152 97 4 2 152 125 268 7.69e-17 76.3
MsG0880043786.01.T01 AT3G28070 29.586 169 116 2 1 169 130 295 9.47e-17 76.6
MsG0880043786.01.T01 AT4G28040 29.240 171 101 6 1 169 123 275 1.52e-16 76.3
MsG0880043786.01.T01 AT4G28040 29.240 171 101 6 1 169 123 275 1.52e-16 76.3
MsG0880043786.01.T01 AT4G28040 29.240 171 101 6 1 169 123 275 1.52e-16 76.3
MsG0880043786.01.T01 AT4G28040 29.240 171 101 6 1 169 123 275 1.52e-16 76.3
MsG0880043786.01.T01 AT4G28040 29.240 171 101 6 1 169 123 275 1.52e-16 76.3
MsG0880043786.01.T01 AT5G40240 29.412 170 116 3 1 169 133 299 1.53e-16 76.3
MsG0880043786.01.T01 AT5G40240 29.412 170 116 3 1 169 133 299 1.53e-16 76.3
MsG0880043786.01.T01 AT5G40240 29.412 170 116 3 1 169 147 313 1.55e-16 76.3
MsG0880043786.01.T01 AT3G28050 25.444 169 118 2 1 169 125 285 4.24e-16 75.1
MsG0880043786.01.T01 AT3G28080 28.994 169 115 3 1 168 1 165 9.49e-16 72.4
MsG0880043786.01.T01 AT3G28130 30.994 171 109 6 1 168 1 165 1.11e-15 72.4
MsG0880043786.01.T01 AT3G28080 28.824 170 116 3 1 169 38 203 1.56e-15 72.4
MsG0880043786.01.T01 AT3G28080 28.824 170 116 3 1 169 38 203 1.56e-15 72.4
MsG0880043786.01.T01 AT3G28080 28.824 170 116 3 1 169 38 203 1.56e-15 72.4
MsG0880043786.01.T01 AT3G28080 28.824 170 116 3 1 169 38 203 1.56e-15 72.4
MsG0880043786.01.T01 AT3G28130 30.814 172 110 6 1 169 40 205 1.63e-15 72.4
MsG0880043786.01.T01 AT3G28130 30.814 172 110 6 1 169 40 205 1.63e-15 72.4
MsG0880043786.01.T01 AT1G70260 27.326 172 113 4 3 168 130 295 2.60e-15 72.8
MsG0880043786.01.T01 AT3G28130 30.814 172 110 6 1 169 126 291 2.79e-15 72.4
MsG0880043786.01.T01 AT3G28080 28.824 170 116 3 1 169 127 292 3.81e-15 72.4
MsG0880043786.01.T01 AT3G28080 28.824 170 116 3 1 169 119 284 4.21e-15 72.0
MsG0880043786.01.T01 AT3G53210 30.159 126 84 2 1 126 123 244 1.64e-14 69.7
MsG0880043786.01.T01 AT5G40230 29.412 170 116 3 1 169 134 300 1.67e-14 70.5
MsG0880043786.01.T01 AT1G11450 25.749 167 115 3 6 169 40 200 1.31e-13 67.0
MsG0880043786.01.T01 AT4G15540 27.219 169 108 2 1 169 130 283 2.06e-13 67.4
MsG0880043786.01.T01 AT4G15540 27.219 169 108 2 1 169 130 283 2.06e-13 67.4
MsG0880043786.01.T01 AT1G01070 26.946 167 115 3 5 168 84 246 2.24e-13 67.0
MsG0880043786.01.T01 AT1G11450 25.749 167 115 3 5 168 131 291 2.56e-13 67.0
MsG0880043786.01.T01 AT1G11450 25.595 168 116 3 5 169 131 292 2.61e-13 67.0
MsG0880043786.01.T01 AT1G11450 25.595 168 116 3 5 169 87 248 2.71e-13 66.6
MsG0880043786.01.T01 AT1G11450 25.595 168 116 3 5 169 80 241 2.75e-13 66.6
MsG0880043786.01.T01 AT1G11460 26.786 168 113 4 5 168 131 292 2.77e-13 67.0
MsG0880043786.01.T01 AT1G01070 26.946 167 115 3 5 168 131 293 3.15e-13 67.0
MsG0880043786.01.T01 AT3G45870 26.286 175 120 3 2 169 51 223 4.95e-13 65.5
MsG0880043786.01.T01 AT3G45870 26.286 175 120 3 2 169 51 223 4.95e-13 65.5
MsG0880043786.01.T01 AT3G45870 26.286 175 120 3 2 169 126 298 8.54e-13 65.5
MsG0880043786.01.T01 AT5G40210 28.824 170 98 4 1 169 126 273 9.94e-13 65.5
MsG0880043786.01.T01 AT3G45870 26.286 175 120 3 2 169 51 223 1.06e-12 65.1
MsG0880043786.01.T01 AT3G45870 26.286 175 120 3 2 169 126 298 1.23e-12 65.1
MsG0880043786.01.T01 AT3G28100 30.597 134 89 2 1 133 127 257 5.55e-12 62.8
MsG0880043786.01.T01 AT4G01440 25.899 139 96 3 1 138 123 255 6.37e-12 62.4
MsG0880043786.01.T01 AT4G19185 25.698 179 120 5 2 169 57 233 5.02e-11 60.5
MsG0880043786.01.T01 AT4G19185 25.698 179 120 5 2 169 135 311 6.16e-11 60.5

Find 35 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCACTTGTGGTCTTTAT+TGG 0.168621 8:+30660681 MsG0880043786.01.T01:CDS
CATATTCCATTTCTCTTAAG+TGG 0.348028 8:-30661286 None:intergenic
AAGATGCCAAGCAAAGATAT+TGG 0.355460 8:+30660271 MsG0880043786.01.T01:CDS
TTTAGCCCACTTAAGAGAAA+TGG 0.359340 8:+30661280 MsG0880043786.01.T01:CDS
TTATCATTGCCACCTTTGCT+TGG 0.363715 8:+30660453 MsG0880043786.01.T01:CDS
CAGGATCTTCTGAAAGAGAT+TGG 0.374788 8:+30660411 MsG0880043786.01.T01:CDS
TATCATTGCCACCTTTGCTT+GGG 0.380505 8:+30660454 MsG0880043786.01.T01:CDS
ATGTACAAGGGCTAGTGATT+AGG 0.401274 8:+30661230 MsG0880043786.01.T01:CDS
ATGTTAATGACATTATATAA+AGG 0.410358 8:+30660320 MsG0880043786.01.T01:CDS
AGATGCCAAGCAAAGATATT+GGG 0.424898 8:+30660272 MsG0880043786.01.T01:CDS
CTTCTGTATGGAGGATTGGT+TGG 0.434265 8:+30660748 MsG0880043786.01.T01:CDS
GTCCTATTGTGGAGATGGTA+TGG 0.436646 8:+30660342 MsG0880043786.01.T01:CDS
TTCTGTATGGAGGATTGGTT+GGG 0.449804 8:+30660749 MsG0880043786.01.T01:CDS
GCCCATACCATCTCCACAAT+AGG 0.458933 8:-30660344 None:intergenic
GATCCTTCTGTATGGAGGAT+TGG 0.467856 8:+30660744 MsG0880043786.01.T01:CDS
ATTTCTCTTAAGTGGGCTAA+AGG 0.489186 8:-30661278 None:intergenic
CTGAGCATGATCCTTCTGTA+TGG 0.494380 8:+30660736 MsG0880043786.01.T01:CDS
GGGAATTGTGACCTCAAGCT+TGG 0.497579 8:+30661201 MsG0880043786.01.T01:intron
CTAAAGGCAGTTGCAAAGAC+AGG 0.501855 8:-30661262 None:intergenic
ATATTCCATTTCTCTTAAGT+GGG 0.514598 8:-30661285 None:intergenic
AGCTTGGCATACTATGTACA+AGG 0.527654 8:+30661217 MsG0880043786.01.T01:CDS
TAAAGGTCCTATTGTGGAGA+TGG 0.529191 8:+30660337 MsG0880043786.01.T01:CDS
TTGTTCCCAATATCTTTGCT+TGG 0.531263 8:-30660277 None:intergenic
GGGCTAGTGATTAGGAAGAA+AGG 0.551748 8:+30661238 MsG0880043786.01.T01:CDS
ATCTCTTTCAGAAGATCCTG+TGG 0.563505 8:-30660408 None:intergenic
TCCTATTGTGGAGATGGTAT+GGG 0.568336 8:+30660343 MsG0880043786.01.T01:CDS
ACATATGAAACAACAACCAC+AGG 0.584073 8:+30660392 MsG0880043786.01.T01:CDS
GAGTGAAGCCCAAGCAAAGG+TGG 0.584171 8:-30660462 None:intergenic
ATTATATAAAGGTCCTATTG+TGG 0.588030 8:+30660331 MsG0880043786.01.T01:CDS
ACTAAGTCTTACTTCACTTG+TGG 0.588891 8:+30660671 MsG0880043786.01.T01:CDS
TACATAGTATGCCAAGCTTG+AGG 0.608423 8:-30661212 None:intergenic
AAAGAGTGAAGCCCAAGCAA+AGG 0.613193 8:-30660465 None:intergenic
CAACCAATCCTCCATACAGA+AGG 0.613695 8:-30660747 None:intergenic
AGCATGATCCTTCTGTATGG+AGG 0.629537 8:+30660739 MsG0880043786.01.T01:CDS
GCTTGGCATACTATGTACAA+GGG 0.751986 8:+30661218 MsG0880043786.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATTGTCAAAAAAA+TGG - Chr8:30661036-30661055 None:intergenic 10.0%
!! ATGTTAATGACATTATATAA+AGG + Chr8:30660320-30660339 MsG0880043786.01.T01:CDS 15.0%
!!! AAATTATTTTTACAATTCGA+CGG + Chr8:30660941-30660960 MsG0880043786.01.T01:intron 15.0%
!!! TTTTGTGAAAATTATTGATT+GGG + Chr8:30660612-30660631 MsG0880043786.01.T01:intron 15.0%
!!! TTTTTGTGAAAATTATTGAT+TGG + Chr8:30660611-30660630 MsG0880043786.01.T01:intron 15.0%
!!! GTGTTTTTACTCTATTATTT+TGG + Chr8:30661077-30661096 MsG0880043786.01.T01:intron 20.0%
! ATATTCCATTTCTCTTAAGT+GGG - Chr8:30661288-30661307 None:intergenic 25.0%
! ATTATATAAAGGTCCTATTG+TGG + Chr8:30660331-30660350 MsG0880043786.01.T01:CDS 25.0%
!! GTTTCATATGTTTCATTTTG+AGG - Chr8:30660383-30660402 None:intergenic 25.0%
!! TGAAAATTATTGATTGGGTT+AGG + Chr8:30660617-30660636 MsG0880043786.01.T01:intron 25.0%
!!! ATTTTGAGGATGTCTATTTT+TGG - Chr8:30660369-30660388 None:intergenic 25.0%
ATCTTAAGTCCCTTGAATAT+AGG - Chr8:30661117-30661136 None:intergenic 30.0%
CATATTCCATTTCTCTTAAG+TGG - Chr8:30661289-30661308 None:intergenic 30.0%
! CTGAAAGAGATTGGATTTTA+GGG + Chr8:30660420-30660439 MsG0880043786.01.T01:CDS 30.0%
! TCTGAAAGAGATTGGATTTT+AGG + Chr8:30660419-30660438 MsG0880043786.01.T01:CDS 30.0%
AAGATGCCAAGCAAAGATAT+TGG + Chr8:30660271-30660290 MsG0880043786.01.T01:CDS 35.0%
ACATATGAAACAACAACCAC+AGG + Chr8:30660392-30660411 MsG0880043786.01.T01:CDS 35.0%
ACTAAGTCTTACTTCACTTG+TGG + Chr8:30660671-30660690 MsG0880043786.01.T01:CDS 35.0%
ACTTCACTTGTGGTCTTTAT+TGG + Chr8:30660681-30660700 MsG0880043786.01.T01:CDS 35.0%
AGATGCCAAGCAAAGATATT+GGG + Chr8:30660272-30660291 MsG0880043786.01.T01:CDS 35.0%
TTGTTCCCAATATCTTTGCT+TGG - Chr8:30660280-30660299 None:intergenic 35.0%
TTTAGCCCACTTAAGAGAAA+TGG + Chr8:30661280-30661299 MsG0880043786.01.T01:CDS 35.0%
! GTGTCGATACCTATATTCAA+GGG + Chr8:30661105-30661124 MsG0880043786.01.T01:intron 35.0%
! TGTGTCGATACCTATATTCA+AGG + Chr8:30661104-30661123 MsG0880043786.01.T01:intron 35.0%
!! ATTTCTCTTAAGTGGGCTAA+AGG - Chr8:30661281-30661300 None:intergenic 35.0%
!!! AGCTATTGCTGTTACTTTTG+TGG + Chr8:30660713-30660732 MsG0880043786.01.T01:CDS 35.0%
AGCTTGGCATACTATGTACA+AGG + Chr8:30661217-30661236 MsG0880043786.01.T01:CDS 40.0%
ATCTCTTTCAGAAGATCCTG+TGG - Chr8:30660411-30660430 None:intergenic 40.0%
GCTTGGCATACTATGTACAA+GGG + Chr8:30661218-30661237 MsG0880043786.01.T01:CDS 40.0%
TAAAGGTCCTATTGTGGAGA+TGG + Chr8:30660337-30660356 MsG0880043786.01.T01:CDS 40.0%
TACATAGTATGCCAAGCTTG+AGG - Chr8:30661215-30661234 None:intergenic 40.0%
TATCATTGCCACCTTTGCTT+GGG + Chr8:30660454-30660473 MsG0880043786.01.T01:CDS 40.0%
TCCTATTGTGGAGATGGTAT+GGG + Chr8:30660343-30660362 MsG0880043786.01.T01:CDS 40.0%
TTATCATTGCCACCTTTGCT+TGG + Chr8:30660453-30660472 MsG0880043786.01.T01:CDS 40.0%
! ATGTACAAGGGCTAGTGATT+AGG + Chr8:30661230-30661249 MsG0880043786.01.T01:CDS 40.0%
! CAGGATCTTCTGAAAGAGAT+TGG + Chr8:30660411-30660430 MsG0880043786.01.T01:CDS 40.0%
!! GGAACAATTTTGACAGTAGC+TGG + Chr8:30660293-30660312 MsG0880043786.01.T01:CDS 40.0%
!! TTCTGTATGGAGGATTGGTT+GGG + Chr8:30660749-30660768 MsG0880043786.01.T01:CDS 40.0%
AAAGAGTGAAGCCCAAGCAA+AGG - Chr8:30660468-30660487 None:intergenic 45.0%
AGCATGATCCTTCTGTATGG+AGG + Chr8:30660739-30660758 MsG0880043786.01.T01:CDS 45.0%
CAACCAATCCTCCATACAGA+AGG - Chr8:30660750-30660769 None:intergenic 45.0%
CTAAAGGCAGTTGCAAAGAC+AGG - Chr8:30661265-30661284 None:intergenic 45.0%
CTGAGCATGATCCTTCTGTA+TGG + Chr8:30660736-30660755 MsG0880043786.01.T01:CDS 45.0%
GATCCTTCTGTATGGAGGAT+TGG + Chr8:30660744-30660763 MsG0880043786.01.T01:CDS 45.0%
GTCCTATTGTGGAGATGGTA+TGG + Chr8:30660342-30660361 MsG0880043786.01.T01:CDS 45.0%
! CTTCTGTATGGAGGATTGGT+TGG + Chr8:30660748-30660767 MsG0880043786.01.T01:CDS 45.0%
! GGGCTAGTGATTAGGAAGAA+AGG + Chr8:30661238-30661257 MsG0880043786.01.T01:CDS 45.0%
!! CAAAAATAAAATAAATTATT+AGG - Chr8:30661178-30661197 None:intergenic 5.0%
!!! AATTTATTTTATTTTTGTTA+GGG + Chr8:30661181-30661200 MsG0880043786.01.T01:intron 5.0%
!!! TAATTTATTTTATTTTTGTT+AGG + Chr8:30661180-30661199 MsG0880043786.01.T01:intron 5.0%
GCCCATACCATCTCCACAAT+AGG - Chr8:30660347-30660366 None:intergenic 50.0%
GGGAATTGTGACCTCAAGCT+TGG + Chr8:30661201-30661220 MsG0880043786.01.T01:intron 50.0%
GAGTGAAGCCCAAGCAAAGG+TGG - Chr8:30660465-30660484 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 30660245 30661309 30660245 ID=MsG0880043786.01;Name=MsG0880043786.01
Chr8 mRNA 30660245 30661309 30660245 ID=MsG0880043786.01.T01;Parent=MsG0880043786.01;Name=MsG0880043786.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|3|0|173
Chr8 exon 30660245 30660496 30660245 ID=MsG0880043786.01.T01:exon:7342;Parent=MsG0880043786.01.T01
Chr8 exon 30660639 30660800 30660639 ID=MsG0880043786.01.T01:exon:7343;Parent=MsG0880043786.01.T01
Chr8 exon 30661202 30661309 30661202 ID=MsG0880043786.01.T01:exon:7344;Parent=MsG0880043786.01.T01
Chr8 CDS 30660245 30660496 30660245 ID=MsG0880043786.01.T01:cds;Parent=MsG0880043786.01.T01
Chr8 CDS 30660639 30660800 30660639 ID=MsG0880043786.01.T01:cds;Parent=MsG0880043786.01.T01
Chr8 CDS 30661202 30661309 30661202 ID=MsG0880043786.01.T01:cds;Parent=MsG0880043786.01.T01
Gene Sequence

>MsG0880043786.01.T01

ATGGAGAAGATAAACATAAAGCAAGTAAGATGCCAAGCAAAGATATTGGGAACAATTTTGACAGTAGCTGGTGCAATGTTAATGACATTATATAAAGGTCCTATTGTGGAGATGGTATGGGCCAAAAATAGACATCCTCAAAATGAAACATATGAAACAACAACCACAGGATCTTCTGAAAGAGATTGGATTTTAGGGTGCACTTTTCTTATCATTGCCACCTTTGCTTGGGCTTCACTCTTTGTTTTGCAAGCAAATGTTATAGAGACGTACAAGCATCATCAACTAAGTCTTACTTCACTTGTGGTCTTTATTGGTACTCTTCAAGCTATTGCTGTTACTTTTGTGGCTGAGCATGATCCTTCTGTATGGAGGATTGGTTGGGATATGAGTTTACTTGCTTCTGCGTATGCTGGAATTGTGACCTCAAGCTTGGCATACTATGTACAAGGGCTAGTGATTAGGAAGAAAGGACCTGTCTTTGCAACTGCCTTTAGCCCACTTAAGAGAAATGGAATATGA

Protein sequence

>MsG0880043786.01.T01

MEKINIKQVRCQAKILGTILTVAGAMLMTLYKGPIVEMVWAKNRHPQNETYETTTTGSSERDWILGCTFLIIATFAWASLFVLQANVIETYKHHQLSLTSLVVFIGTLQAIAVTFVAEHDPSVWRIGWDMSLLASAYAGIVTSSLAYYVQGLVIRKKGPVFATAFSPLKRNGI*