AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041119.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041119.01.T01 MTR_7g104490 99.284 419 3 0 51 469 1 419 0.0 845
MsG0780041119.01.T01 MTR_1g060040 71.360 419 120 0 51 469 1 419 0.0 589
MsG0780041119.01.T01 MTR_4g053260 63.723 419 152 0 51 469 2 420 0.0 555
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041119.01.T01 AT1G67190 63.007 419 155 0 51 469 1 419 0.0 527
MsG0780041119.01.T01 AT1G67190 63.007 419 155 0 51 469 1 419 0.0 527

Find 104 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAACTTAAGGATTTAAAT+TGG 0.171218 7:-86841917 MsG0780041119.01.T01:three_prime_UTR
TTCTCAATGATATTGAAATT+AGG 0.193329 7:+86843094 None:intergenic
AATCATGAATTCAGTGAATT+TGG 0.195737 7:+86842250 None:intergenic
TCTCAATGATATTGAAATTA+GGG 0.201362 7:+86843095 None:intergenic
TACAATAAAATCTTTCATTA+AGG 0.228257 7:+86845030 None:intergenic
GAATCTGACATAGCGATTTC+TGG 0.230502 7:+86842887 None:intergenic
TAAGATCCTCCACAGTATTT+AGG 0.246972 7:+86841880 None:intergenic
TACCTTCTTGTCCGTCTTGC+CGG 0.277927 7:+86842125 None:intergenic
AGAGCAAATTTCGCGATATA+GGG 0.320402 7:+86843285 None:intergenic
AAGTTGCAATGGTGTTATAT+TGG 0.323507 7:+86841932 None:intergenic
CATCCTTAACTTGCAAGAAA+TGG 0.324453 7:-86843363 MsG0780041119.01.T01:CDS
AAAGATGGAGTGCTTCATTA+TGG 0.324477 7:-86842452 MsG0780041119.01.T01:CDS
TAGAGCAAATTTCGCGATAT+AGG 0.327459 7:+86843284 None:intergenic
GCAACTTAAGGATTTAAATT+GGG 0.331533 7:-86841916 MsG0780041119.01.T01:three_prime_UTR
AGTTTGGGTAGCTGGACTTT+TGG 0.334910 7:-86842354 MsG0780041119.01.T01:CDS
CTGTTACCCCTGTCATTGCT+TGG 0.349306 7:-86843171 MsG0780041119.01.T01:CDS
AATTCATAGGTACCATTAGA+TGG 0.353568 7:+86845128 None:intergenic
ATGTATTGAATGAAAGAGTT+TGG 0.353897 7:+86843317 None:intergenic
ATAGACAAGGTTTCAAGTTT+CGG 0.358073 7:+86842917 None:intergenic
TCTCCATTTCTTGCAAGTTA+AGG 0.360964 7:+86843360 None:intergenic
ATCTTTCAAGTCATAACTTA+AGG 0.368328 7:+86842469 None:intergenic
TATAACACCATTGCAACTTA+AGG 0.371601 7:-86841928 MsG0780041119.01.T01:three_prime_UTR
GCTTAGCAGCTCTTCTTTGA+AGG 0.394764 7:-86842849 MsG0780041119.01.T01:CDS
TTAAGTTATGACTTGAAAGA+TGG 0.408134 7:-86842467 MsG0780041119.01.T01:CDS
CCAATCTACATTGAATTCAT+AGG 0.409184 7:+86845115 None:intergenic
TAAATGAATCCTCCATCTAA+TGG 0.419177 7:-86845140 MsG0780041119.01.T01:CDS
AGGATCTTAATCAAACAGTT+TGG 0.423175 7:-86841866 MsG0780041119.01.T01:three_prime_UTR
CTTGGCTAGCAATCCTATCT+CGG 0.423380 7:-86843041 MsG0780041119.01.T01:CDS
TGTTAGGCGCTGCAATCCTT+TGG 0.433874 7:+86843222 None:intergenic
GTATCATATTATCCCATCTT+GGG 0.437104 7:-86843408 MsG0780041119.01.T01:CDS
GTGCTTCATTATGGCTTGCA+AGG 0.446222 7:-86842443 MsG0780041119.01.T01:CDS
CGAAATTTGCTCTAGTCACT+TGG 0.446849 7:-86843275 MsG0780041119.01.T01:CDS
ATGATACCGACCACTTCAAC+AGG 0.448381 7:+86843424 None:intergenic
AAGGAAAGGTGCGTTAATCT+AGG 0.450642 7:+86842488 None:intergenic
AGTATTGGTTTGATCTCATC+CGG 0.460308 7:-86842144 MsG0780041119.01.T01:three_prime_UTR
TACATAAGCCAAGCAATGAC+AGG 0.467063 7:+86843163 None:intergenic
TATCCCATCTTGGGTCTGCT+AGG 0.472254 7:-86843399 MsG0780041119.01.T01:CDS
TTGTAAATCAAATGCAATCA+AGG 0.474891 7:+86841838 None:intergenic
GGTATCATATTATCCCATCT+TGG 0.475174 7:-86843409 MsG0780041119.01.T01:CDS
ATCCCATCTTGGGTCTGCTA+GGG 0.476732 7:-86843398 MsG0780041119.01.T01:CDS
ATCTGTTGCTGTCAAAGTAT+TGG 0.476869 7:-86842159 MsG0780041119.01.T01:three_prime_UTR
CATCATCCATGAAAATTGTT+AGG 0.477751 7:+86843206 None:intergenic
TCTAGGAAAACAAACAGATA+TGG 0.480581 7:+86842505 None:intergenic
CAACTTAAGGATTTAAATTG+GGG 0.481345 7:-86841915 MsG0780041119.01.T01:three_prime_UTR
TTCGGCTCAACACCCGAGAT+AGG 0.481385 7:+86843028 None:intergenic
TTTAAATTGGGGTCGTGTTG+TGG 0.482965 7:-86841904 MsG0780041119.01.T01:three_prime_UTR
CATCCCTAGCAGACCCAAGA+TGG 0.487907 7:+86843395 None:intergenic
TTGAATATGAGTAGGAGGTT+CGG 0.495590 7:-86842190 MsG0780041119.01.T01:exon
CCTATGAATTCAATGTAGAT+TGG 0.496450 7:-86845115 MsG0780041119.01.T01:CDS
TAGATTGGTCTCGTATTAAG+AGG 0.502089 7:-86845100 MsG0780041119.01.T01:CDS
TGCAATTAATATCGAAGCAA+AGG 0.502679 7:+86841745 None:intergenic
TTTAAATCCTTAAGTTGCAA+TGG 0.505721 7:+86841921 None:intergenic
AGTAGCTATGCTAAATATTG+TGG 0.506191 7:-86841800 MsG0780041119.01.T01:three_prime_UTR
TGCTTCATTATGGCTTGCAA+GGG 0.506316 7:-86842442 MsG0780041119.01.T01:CDS
AATGTGGTTGTGTTAGAACT+TGG 0.510674 7:-86842404 MsG0780041119.01.T01:CDS
CAAGGAAATTTATGATACTT+CGG 0.514673 7:+86843010 None:intergenic
AAAACGACACAAGAAAATCA+TGG 0.522256 7:+86842092 None:intergenic
GTTCGAGTTTGAATATGAGT+AGG 0.522810 7:-86842198 MsG0780041119.01.T01:exon
GATCAATTCAAAAGCATCAA+AGG 0.535278 7:+86842745 None:intergenic
TTGGCTAGCAATCCTATCTC+GGG 0.539654 7:-86843040 MsG0780041119.01.T01:CDS
CTCAATGATATTGAAATTAG+GGG 0.540853 7:+86843096 None:intergenic
TGTGTAACTTCATATTTATG+TGG 0.543217 7:-86842628 MsG0780041119.01.T01:CDS
CGAGTTTGAATATGAGTAGG+AGG 0.545250 7:-86842195 MsG0780041119.01.T01:exon
TCAAGTCATAACTTAAGGAA+AGG 0.545749 7:+86842474 None:intergenic
TATTATCTCCAATGTCAAGA+TGG 0.549282 7:+86842675 None:intergenic
TTGCATTTGATTTACAATTG+TGG 0.549574 7:-86841832 MsG0780041119.01.T01:three_prime_UTR
AAGTAGCAGAAGCATTGCTC+AGG 0.558819 7:-86842065 MsG0780041119.01.T01:three_prime_UTR
GCAAGAAATGGAGAGAAGCT+TGG 0.560253 7:-86843351 MsG0780041119.01.T01:CDS
AGTGTCATCCATCTTGACAT+TGG 0.562714 7:-86842683 MsG0780041119.01.T01:CDS
AGCAATGCTTCTGCTACTTG+AGG 0.564710 7:+86842069 None:intergenic
TACACACATCTACGATCTCA+AGG 0.565105 7:+86842645 None:intergenic
TTTCATTCAATACATCTGAC+TGG 0.565276 7:-86843309 MsG0780041119.01.T01:CDS
AATCGCTATGTCAGATTCAG+AGG 0.571141 7:-86842882 MsG0780041119.01.T01:CDS
ACTGAATTCATGATTCAACT+AGG 0.580130 7:-86842242 MsG0780041119.01.T01:CDS
ATCCCTAGCAGACCCAAGAT+GGG 0.587597 7:+86843396 None:intergenic
AATAATAGCTCGACGCGTGG+AGG 0.588508 7:-86845077 MsG0780041119.01.T01:CDS
TGGTTGTGTTAGAACTTGGA+TGG 0.588684 7:-86842400 MsG0780041119.01.T01:CDS
GAGCAAATTTCGCGATATAG+GGG 0.592223 7:+86843286 None:intergenic
GGAGGATCTTCCTGTTGAAG+TGG 0.592625 7:-86843434 MsG0780041119.01.T01:CDS
AACGACAGCGACTTCAAGCA+AGG 0.592920 7:+86842992 None:intergenic
ATATCATTGAGAAATGCAGC+AGG 0.597773 7:-86843084 MsG0780041119.01.T01:CDS
TTCTGGACAAACAATAGACA+AGG 0.600718 7:+86842904 None:intergenic
ATCCGGCAAGACGGACAAGA+AGG 0.600879 7:-86842127 MsG0780041119.01.T01:three_prime_UTR
AGGAATAATAGCTCGACGCG+TGG 0.607212 7:-86845080 MsG0780041119.01.T01:CDS
TGCTTGGCTTATGTATACGA+GGG 0.608384 7:-86843155 MsG0780041119.01.T01:CDS
CACAAGAAAATCATGGAACA+CGG 0.609378 7:+86842099 None:intergenic
TATTGAATGAAAGAGTTTGG+AGG 0.609653 7:+86843320 None:intergenic
ATTTCGAAATATAGATCGAA+GGG 0.610428 7:+86841956 None:intergenic
TATTTCGAAATATAGATCGA+AGG 0.611854 7:+86841955 None:intergenic
TGATAAACTCATATTAGTGG+CGG 0.615767 7:-86842801 MsG0780041119.01.T01:CDS
GGATTACTGAGGGACTCTTG+TGG 0.623079 7:-86845056 MsG0780041119.01.T01:CDS
ACATAAGCCAAGCAATGACA+GGG 0.628082 7:+86843164 None:intergenic
TTACTGAGGGACTCTTGTGG+TGG 0.628893 7:-86845053 MsG0780041119.01.T01:CDS
GATCTTCCTGTTGAAGTGGT+CGG 0.634333 7:-86843430 MsG0780041119.01.T01:CDS
TTTGATCTCATCCGGCAAGA+CGG 0.637709 7:-86842136 MsG0780041119.01.T01:three_prime_UTR
TTGCTTGGCTTATGTATACG+AGG 0.648455 7:-86843156 MsG0780041119.01.T01:CDS
CGAGATAGGATTGCTAGCCA+AGG 0.649589 7:+86843042 None:intergenic
TCATAGGTACCATTAGATGG+AGG 0.655418 7:+86845131 None:intergenic
GACGCGTGGAGGATTACTGA+GGG 0.673117 7:-86845066 MsG0780041119.01.T01:CDS
TGTTGTGGTCCTAAATACTG+TGG 0.680479 7:-86841889 MsG0780041119.01.T01:three_prime_UTR
TTGACAGCAACAGATGCATG+TGG 0.715644 7:+86842167 None:intergenic
CGACGCGTGGAGGATTACTG+AGG 0.729954 7:-86845067 MsG0780041119.01.T01:CDS
TGTGGTCCTAAATACTGTGG+AGG 0.739502 7:-86841886 MsG0780041119.01.T01:three_prime_UTR
CATAAGCCAAGCAATGACAG+GGG 0.741525 7:+86843165 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTGTTGTTATTTTTTT+TGG - Chr7:86842976-86842995 MsG0780041119.01.T01:CDS 10.0%
!! TACAATAAAATCTTTCATTA+AGG + Chr7:86841868-86841887 None:intergenic 15.0%
!! TGTATATATGTTATAAATTG+TGG - Chr7:86842470-86842489 MsG0780041119.01.T01:CDS 15.0%
!! TTGAATAATTAAAATGAAAG+TGG + Chr7:86842816-86842835 None:intergenic 15.0%
!! TTTAAGAAATAATCTTATCA+AGG + Chr7:86841906-86841925 None:intergenic 15.0%
!!! ATAATAACATATTCTAAAAG+AGG + Chr7:86841991-86842010 None:intergenic 15.0%
!! AAAATTAGGTATATATTCAG+AGG - Chr7:86842248-86842267 MsG0780041119.01.T01:CDS 20.0%
!! AAATTAGGTATATATTCAGA+GGG - Chr7:86842249-86842268 MsG0780041119.01.T01:CDS 20.0%
!! ACACTTTCAATTAATCATAA+TGG + Chr7:86843244-86843263 None:intergenic 20.0%
!! ATATAGAGATAGTTTCTTAT+TGG + Chr7:86842430-86842449 None:intergenic 20.0%
!! ATTAACGTATTAAAATGAGA+AGG + Chr7:86842298-86842317 None:intergenic 20.0%
!! ATTTAGCTAACATAAAAGTT+GGG + Chr7:86842066-86842085 None:intergenic 20.0%
!! CATATATCATATATCTTTAG+AGG - Chr7:86842503-86842522 MsG0780041119.01.T01:CDS 20.0%
!! TATAGAGATAGTTTCTTATT+GGG + Chr7:86842429-86842448 None:intergenic 20.0%
!! TATTTAGCTAACATAAAAGT+TGG + Chr7:86842067-86842086 None:intergenic 20.0%
!! TCTCAATGATATTGAAATTA+GGG + Chr7:86843803-86843822 None:intergenic 20.0%
!! TTAACGTATTAAAATGAGAA+GGG + Chr7:86842297-86842316 None:intergenic 20.0%
!! TTCAATTAATCATAATGGTT+CGG + Chr7:86843239-86843258 None:intergenic 20.0%
!! TTCTCAATGATATTGAAATT+AGG + Chr7:86843804-86843823 None:intergenic 20.0%
!!! AACTTTTATGTTAGCTAAAT+AGG - Chr7:86842066-86842085 MsG0780041119.01.T01:three_prime_UTR 20.0%
!!! ACTGTTTTTGATTGAAATAT+AGG - Chr7:86843414-86843433 MsG0780041119.01.T01:CDS 20.0%
!!! ACTTTTATGTTAGCTAAATA+GGG - Chr7:86842067-86842086 MsG0780041119.01.T01:three_prime_UTR 20.0%
!!! TCTTTGAAAAAATAAATGCA+TGG + Chr7:86842323-86842342 None:intergenic 20.0%
!!! TGTTAAATTATTTTATGCGA+TGG - Chr7:86843440-86843459 MsG0780041119.01.T01:CDS 20.0%
!!! TTGTTGTTATTTTTTTTGGT+AGG - Chr7:86842980-86842999 MsG0780041119.01.T01:CDS 20.0%
!!! TTTTGATAAACTCATATTAG+TGG - Chr7:86844091-86844110 MsG0780041119.01.T01:intron 20.0%
! AAAAAATTACGACAGAATGA+AGG + Chr7:86842103-86842122 None:intergenic 25.0%
! AAAACCAAACTCGTAAAATT+AGG - Chr7:86842234-86842253 MsG0780041119.01.T01:CDS 25.0%
! AACGAAAAATTGAAATCGAT+CGG + Chr7:86842733-86842752 None:intergenic 25.0%
! AAGAAATAATCTTATCAAGG+TGG + Chr7:86841903-86841922 None:intergenic 25.0%
! AATCATGAATTCAGTGAATT+TGG + Chr7:86844648-86844667 None:intergenic 25.0%
! ACTTGCATTAACTAATTAGA+TGG + Chr7:86842168-86842187 None:intergenic 25.0%
! ACTTTATCAATGAAATGACA+AGG + Chr7:86842933-86842952 None:intergenic 25.0%
! ATGTATTGAATGAAAGAGTT+TGG + Chr7:86843581-86843600 None:intergenic 25.0%
! ATGTCCTAATCTTAAAAAGA+TGG - Chr7:86844568-86844587 MsG0780041119.01.T01:intron 25.0%
! ATTTCGAAATATAGATCGAA+GGG + Chr7:86844942-86844961 None:intergenic 25.0%
! CAACTTAAGGATTTAAATTG+GGG - Chr7:86844980-86844999 MsG0780041119.01.T01:intron 25.0%
! CAAGGAAATTTATGATACTT+CGG + Chr7:86843888-86843907 None:intergenic 25.0%
! CTCAATGATATTGAAATTAG+GGG + Chr7:86843802-86843821 None:intergenic 25.0%
! CTTAAAAAGATGGTCATTTA+TGG - Chr7:86844578-86844597 MsG0780041119.01.T01:intron 25.0%
! CTTGCATTAACTAATTAGAT+GGG + Chr7:86842167-86842186 None:intergenic 25.0%
! CTTTATCAATGAAATGACAA+GGG + Chr7:86842932-86842951 None:intergenic 25.0%
! GCAACTTAAGGATTTAAATT+GGG - Chr7:86844979-86844998 MsG0780041119.01.T01:intron 25.0%
! TATTTCGAAATATAGATCGA+AGG + Chr7:86844943-86844962 None:intergenic 25.0%
! TGCAACTTAAGGATTTAAAT+TGG - Chr7:86844978-86844997 MsG0780041119.01.T01:intron 25.0%
! TGTGTAACTTCATATTTATG+TGG - Chr7:86844267-86844286 MsG0780041119.01.T01:intron 25.0%
! TTAAGTTATGACTTGAAAGA+TGG - Chr7:86844428-86844447 MsG0780041119.01.T01:intron 25.0%
! TTGCATTAACTAATTAGATG+GGG + Chr7:86842166-86842185 None:intergenic 25.0%
! TTGTAAATCAAATGCAATCA+AGG + Chr7:86845060-86845079 None:intergenic 25.0%
!! ATCTTTCAAGTCATAACTTA+AGG + Chr7:86844429-86844448 None:intergenic 25.0%
!! CTTTTGAATTGATCAATAAG+GGG - Chr7:86844159-86844178 MsG0780041119.01.T01:intron 25.0%
!! GCTTTTGAATTGATCAATAA+GGG - Chr7:86844158-86844177 MsG0780041119.01.T01:intron 25.0%
!! TATACCTAATTTTACGAGTT+TGG + Chr7:86842241-86842260 None:intergenic 25.0%
!! TGCTTTTGAATTGATCAATA+AGG - Chr7:86844157-86844176 MsG0780041119.01.T01:intron 25.0%
!! TTGCATTTGATTTACAATTG+TGG - Chr7:86845063-86845082 MsG0780041119.01.T01:CDS 25.0%
!! TTTAAATCCTTAAGTTGCAA+TGG + Chr7:86844977-86844996 None:intergenic 25.0%
!! TTTTAACGTCATCTTTTTGT+TGG - Chr7:86842120-86842139 MsG0780041119.01.T01:three_prime_UTR 25.0%
!!! ATGACCATCTTTTTAAGATT+AGG + Chr7:86844575-86844594 None:intergenic 25.0%
!!! TAAATTATTTTATGCGATGG+AGG - Chr7:86843443-86843462 MsG0780041119.01.T01:CDS 25.0%
!!! TTTACCAATTTTTTATGCAG+AGG + Chr7:86842858-86842877 None:intergenic 25.0%
AAAACGACACAAGAAAATCA+TGG + Chr7:86844806-86844825 None:intergenic 30.0%
AAAATAAATAAAGGGCAACC+CGG + Chr7:86843314-86843333 None:intergenic 30.0%
AAATAATCTTATCAAGGTGG+AGG + Chr7:86841900-86841919 None:intergenic 30.0%
AACGAAAGATAACAGTTAGA+AGG + Chr7:86842784-86842803 None:intergenic 30.0%
AATTCATAGGTACCATTAGA+TGG + Chr7:86841770-86841789 None:intergenic 30.0%
ACATCCTCTGCATAAAAAAT+TGG - Chr7:86842851-86842870 MsG0780041119.01.T01:CDS 30.0%
ACGAAAAATTGAAATCGATC+GGG + Chr7:86842732-86842751 None:intergenic 30.0%
ACGAAAGATAACAGTTAGAA+GGG + Chr7:86842783-86842802 None:intergenic 30.0%
ACTGAATTCATGATTCAACT+AGG - Chr7:86844653-86844672 MsG0780041119.01.T01:intron 30.0%
AGGATCTTAATCAAACAGTT+TGG - Chr7:86845029-86845048 MsG0780041119.01.T01:intron 30.0%
AGTAGCTATGCTAAATATTG+TGG - Chr7:86845095-86845114 MsG0780041119.01.T01:CDS 30.0%
ATGTGAGTGAATTAGTATCT+GGG + Chr7:86842900-86842919 None:intergenic 30.0%
CATCATCCATGAAAATTGTT+AGG + Chr7:86843692-86843711 None:intergenic 30.0%
CCAATCTACATTGAATTCAT+AGG + Chr7:86841783-86841802 None:intergenic 30.0%
CCTATGAATTCAATGTAGAT+TGG - Chr7:86841780-86841799 MsG0780041119.01.T01:three_prime_UTR 30.0%
GTATCATATTATCCCATCTT+GGG - Chr7:86843487-86843506 MsG0780041119.01.T01:intron 30.0%
TATAACACCATTGCAACTTA+AGG - Chr7:86844967-86844986 MsG0780041119.01.T01:intron 30.0%
TATTATCTCCAATGTCAAGA+TGG + Chr7:86844223-86844242 None:intergenic 30.0%
TATTGAATGAAAGAGTTTGG+AGG + Chr7:86843578-86843597 None:intergenic 30.0%
TCAAGTCATAACTTAAGGAA+AGG + Chr7:86844424-86844443 None:intergenic 30.0%
TCTAGGAAAACAAACAGATA+TGG + Chr7:86844393-86844412 None:intergenic 30.0%
TGATAAACTCATATTAGTGG+CGG - Chr7:86844094-86844113 MsG0780041119.01.T01:intron 30.0%
TTAACTAATTAGATGGGGAA+TGG + Chr7:86842161-86842180 None:intergenic 30.0%
TTCTTAAACAAGTTCCACTT+TGG - Chr7:86841918-86841937 MsG0780041119.01.T01:three_prime_UTR 30.0%
TTTCATTCAATACATCTGAC+TGG - Chr7:86843586-86843605 MsG0780041119.01.T01:intron 30.0%
TTTCTGATTGATATCTTGGT+CGG - Chr7:86843021-86843040 MsG0780041119.01.T01:CDS 30.0%
! TATTATTCTCCTCAGTCTTT+TGG - Chr7:86842005-86842024 MsG0780041119.01.T01:three_prime_UTR 30.0%
! TCATCTTTTTGTTGGATTGT+TGG - Chr7:86842128-86842147 MsG0780041119.01.T01:three_prime_UTR 30.0%
!! AAGAGGTTTTATGTGAGTAA+TGG + Chr7:86841974-86841993 None:intergenic 30.0%
!! AAGTTGCAATGGTGTTATAT+TGG + Chr7:86844966-86844985 None:intergenic 30.0%
!! ACTGTTTCTGATTGATATCT+TGG - Chr7:86843017-86843036 MsG0780041119.01.T01:CDS 30.0%
!! ATAGACAAGGTTTCAAGTTT+CGG + Chr7:86843981-86844000 None:intergenic 30.0%
!! GATATTCAGATCGATTTGAT+CGG - Chr7:86842388-86842407 MsG0780041119.01.T01:CDS 30.0%
!! GATCAATTCAAAAGCATCAA+AGG + Chr7:86844153-86844172 None:intergenic 30.0%
!!! TGTACACTTTTTCAAACCAA+AGG - Chr7:86843657-86843676 MsG0780041119.01.T01:intron 30.0%
AATGTGGTTGTGTTAGAACT+TGG - Chr7:86844491-86844510 MsG0780041119.01.T01:intron 35.0%
AGAGCAAATTTCGCGATATA+GGG + Chr7:86843613-86843632 None:intergenic 35.0%
ATATCATTGAGAAATGCAGC+AGG - Chr7:86843811-86843830 MsG0780041119.01.T01:intron 35.0%
ATCTGTTGCTGTCAAAGTAT+TGG - Chr7:86844736-86844755 MsG0780041119.01.T01:intron 35.0%
CACAAGAAAATCATGGAACA+CGG + Chr7:86844799-86844818 None:intergenic 35.0%
CATGTGAGTGAATTAGTATC+TGG + Chr7:86842901-86842920 None:intergenic 35.0%
CGAAAAATTGAAATCGATCG+GGG + Chr7:86842731-86842750 None:intergenic 35.0%
CGAAAGATAACAGTTAGAAG+GGG + Chr7:86842782-86842801 None:intergenic 35.0%
CGTCGAAGTTAAAAAAGCTT+CGG - Chr7:86844318-86844337 MsG0780041119.01.T01:intron 35.0%
GATATCAATCAGAAACAGTC+TGG + Chr7:86843016-86843035 None:intergenic 35.0%
GATTTGTGATTGAATGATGC+TGG + Chr7:86843148-86843167 None:intergenic 35.0%
GGCTTACTTGGATGATTAAA+GGG + Chr7:86842761-86842780 None:intergenic 35.0%
GGTATCATATTATCCCATCT+TGG - Chr7:86843486-86843505 MsG0780041119.01.T01:intron 35.0%
GGTGGAAAGTTAAAATGAGT+GGG + Chr7:86842618-86842637 None:intergenic 35.0%
TAAACCAATCCAAAAGACTG+AGG + Chr7:86842017-86842036 None:intergenic 35.0%
TAAGATCCTCCACAGTATTT+AGG + Chr7:86845018-86845037 None:intergenic 35.0%
TACTTGGATGATTAAAGGGT+CGG + Chr7:86842757-86842776 None:intergenic 35.0%
TAGAGCAAATTTCGCGATAT+AGG + Chr7:86843614-86843633 None:intergenic 35.0%
TCTCCATTTCTTGCAAGTTA+AGG + Chr7:86843538-86843557 None:intergenic 35.0%
TTCTGGACAAACAATAGACA+AGG + Chr7:86843994-86844013 None:intergenic 35.0%
TTGAATATGAGTAGGAGGTT+CGG - Chr7:86844705-86844724 MsG0780041119.01.T01:intron 35.0%
! AAAGATGGAGTGCTTCATTA+TGG - Chr7:86844443-86844462 MsG0780041119.01.T01:intron 35.0%
! CAGTGATCTTTTCTCAGTTT+GGG - Chr7:86844526-86844545 MsG0780041119.01.T01:intron 35.0%
! GTTCGAGTTTGAATATGAGT+AGG - Chr7:86844697-86844716 MsG0780041119.01.T01:intron 35.0%
! GTTGTCTTTTCTGATGAATG+TGG - Chr7:86844475-86844494 MsG0780041119.01.T01:intron 35.0%
! TCAGTGATCTTTTCTCAGTT+TGG - Chr7:86844525-86844544 MsG0780041119.01.T01:intron 35.0%
!! AGTATTGGTTTGATCTCATC+CGG - Chr7:86844751-86844770 MsG0780041119.01.T01:intron 35.0%
!! CATCCTTAACTTGCAAGAAA+TGG - Chr7:86843532-86843551 MsG0780041119.01.T01:intron 35.0%
!! TAGATTGGTCTCGTATTAAG+AGG - Chr7:86841795-86841814 MsG0780041119.01.T01:three_prime_UTR 35.0%
!!! ACGAGTTTGGTTTTTGTAAG+TGG + Chr7:86842228-86842247 None:intergenic 35.0%
!!! CGAGTTTGGTTTTTGTAAGT+GGG + Chr7:86842227-86842246 None:intergenic 35.0%
AATCGCTATGTCAGATTCAG+AGG - Chr7:86844013-86844032 MsG0780041119.01.T01:intron 40.0%
ACATAAGCCAAGCAATGACA+GGG + Chr7:86843734-86843753 None:intergenic 40.0%
AGTGTCATCCATCTTGACAT+TGG - Chr7:86844212-86844231 MsG0780041119.01.T01:intron 40.0%
AGTTAAAAAAGCTTCGGCTG+TGG - Chr7:86844324-86844343 MsG0780041119.01.T01:intron 40.0%
ATGATACCGATCACTTCAAC+AGG + Chr7:86843068-86843087 None:intergenic 40.0%
CGAGTTTGAATATGAGTAGG+AGG - Chr7:86844700-86844719 MsG0780041119.01.T01:intron 40.0%
GAAAAGTCTTGACACTATCC+CGG - Chr7:86843264-86843283 MsG0780041119.01.T01:CDS 40.0%
GAAATGCAGCAGGAAAAAGT+TGG - Chr7:86843821-86843840 MsG0780041119.01.T01:intron 40.0%
GAATCTGACATAGCGATTTC+TGG + Chr7:86844011-86844030 None:intergenic 40.0%
GAGCAAATTTCGCGATATAG+GGG + Chr7:86843612-86843631 None:intergenic 40.0%
GGGCTTACTTGGATGATTAA+AGG + Chr7:86842762-86842781 None:intergenic 40.0%
GGGTGGAAAGTTAAAATGAG+TGG + Chr7:86842619-86842638 None:intergenic 40.0%
TACACACATCTACGATCTCA+AGG + Chr7:86844253-86844272 None:intergenic 40.0%
TACATAAGCCAAGCAATGAC+AGG + Chr7:86843735-86843754 None:intergenic 40.0%
TATCCTCTGCAATGACTGTA+TGG + Chr7:86842362-86842381 None:intergenic 40.0%
TCATAGGTACCATTAGATGG+AGG + Chr7:86841767-86841786 None:intergenic 40.0%
TGATATCTTGGTCGGTGTAA+TGG - Chr7:86843029-86843048 MsG0780041119.01.T01:CDS 40.0%
TGCTTGGCTTATGTATACGA+GGG - Chr7:86843740-86843759 MsG0780041119.01.T01:intron 40.0%
TGGTTGTGTTAGAACTTGGA+TGG - Chr7:86844495-86844514 MsG0780041119.01.T01:intron 40.0%
TGTTGTGGTCCTAAATACTG+TGG - Chr7:86845006-86845025 MsG0780041119.01.T01:intron 40.0%
TTCCACTTTGGTTGCAAATG+CGG - Chr7:86841930-86841949 MsG0780041119.01.T01:three_prime_UTR 40.0%
TTGCTTGGCTTATGTATACG+AGG - Chr7:86843739-86843758 MsG0780041119.01.T01:intron 40.0%
TTTAAATTGGGGTCGTGTTG+TGG - Chr7:86844991-86845010 MsG0780041119.01.T01:intron 40.0%
! AAGGAAAGGTGCGTTAATCT+AGG + Chr7:86844410-86844429 None:intergenic 40.0%
! CGAAATTTGCTCTAGTCACT+TGG - Chr7:86843620-86843639 MsG0780041119.01.T01:intron 40.0%
! TGCTTCATTATGGCTTGCAA+GGG - Chr7:86844453-86844472 MsG0780041119.01.T01:intron 40.0%
! TTCTCCTCAGTCTTTTGGAT+TGG - Chr7:86842010-86842029 MsG0780041119.01.T01:three_prime_UTR 40.0%
! TTTTGTTAGCATCTCAGCGT+TGG - Chr7:86843929-86843948 MsG0780041119.01.T01:intron 40.0%
!! AAAGTTGGAGGTTTTGACCT+TGG - Chr7:86843836-86843855 MsG0780041119.01.T01:intron 40.0%
!! GTTTTTGTAAGTGGGTATCG+TGG + Chr7:86842219-86842238 None:intergenic 40.0%
ACAGTTAGAAGGGGCTTACT+TGG + Chr7:86842773-86842792 None:intergenic 45.0%
ACCCTTCCTGTTGAAGTGAT+CGG - Chr7:86843059-86843078 MsG0780041119.01.T01:CDS 45.0%
ACCGATCACTTCAACAGGAA+GGG + Chr7:86843063-86843082 None:intergenic 45.0%
AGACGAAGGGAAAATTTGGC+TGG + Chr7:86842640-86842659 None:intergenic 45.0%
ATGATACCGACCACTTCAAC+AGG + Chr7:86843474-86843493 None:intergenic 45.0%
ATGCAGCAGGAAAAAGTTGG+AGG - Chr7:86843824-86843843 MsG0780041119.01.T01:intron 45.0%
CATAAGCCAAGCAATGACAG+GGG + Chr7:86843733-86843752 None:intergenic 45.0%
CCTCAGACGAAGGGAAAATT+TGG + Chr7:86842644-86842663 None:intergenic 45.0%
CTTGGCTAGCAATCCTATCT+CGG - Chr7:86843854-86843873 MsG0780041119.01.T01:intron 45.0%
GAACCATACAGTCATTGCAG+AGG - Chr7:86842356-86842375 MsG0780041119.01.T01:CDS 45.0%
GACGAAGGGAAAATTTGGCT+GGG + Chr7:86842639-86842658 None:intergenic 45.0%
GATCTTCCTGTTGAAGTGGT+CGG - Chr7:86843465-86843484 MsG0780041119.01.T01:intron 45.0%
GCAAGAAATGGAGAGAAGCT+TGG - Chr7:86843544-86843563 MsG0780041119.01.T01:intron 45.0%
GCTTAGCAGCTCTTCTTTGA+AGG - Chr7:86844046-86844065 MsG0780041119.01.T01:intron 45.0%
TACCGATCACTTCAACAGGA+AGG + Chr7:86843064-86843083 None:intergenic 45.0%
TCCACTTTGGTTGCAAATGC+GGG - Chr7:86841931-86841950 MsG0780041119.01.T01:three_prime_UTR 45.0%
TGTGGTCCTAAATACTGTGG+AGG - Chr7:86845009-86845028 MsG0780041119.01.T01:intron 45.0%
TTGACAGCAACAGATGCATG+TGG + Chr7:86844731-86844750 None:intergenic 45.0%
TTGGCTAGCAATCCTATCTC+GGG - Chr7:86843855-86843874 MsG0780041119.01.T01:intron 45.0%
TTTGATCTCATCCGGCAAGA+CGG - Chr7:86844759-86844778 MsG0780041119.01.T01:intron 45.0%
! AGCAATGCTTCTGCTACTTG+AGG + Chr7:86844829-86844848 None:intergenic 45.0%
! AGTTTGGGTAGCTGGACTTT+TGG - Chr7:86844541-86844560 MsG0780041119.01.T01:intron 45.0%
! CCAAATTTTCCCTTCGTCTG+AGG - Chr7:86842641-86842660 MsG0780041119.01.T01:CDS 45.0%
! CTTTTCTCAGTTTGGGTAGC+TGG - Chr7:86844533-86844552 MsG0780041119.01.T01:intron 45.0%
! GCAGCGCCTAACAATTTTCA+TGG - Chr7:86843683-86843702 MsG0780041119.01.T01:intron 45.0%
! GTGCTTCATTATGGCTTGCA+AGG - Chr7:86844452-86844471 MsG0780041119.01.T01:intron 45.0%
!! AAGTAGCAGAAGCATTGCTC+AGG - Chr7:86844830-86844849 MsG0780041119.01.T01:intron 45.0%
!! TCTTGGTCGGTGTAATGGAT+TGG - Chr7:86843034-86843053 MsG0780041119.01.T01:CDS 45.0%
!! TGTTTTTGACGACGAGGATG+AGG - Chr7:86844352-86844371 MsG0780041119.01.T01:intron 45.0%
!!! GAGTGTTGTTTTTGACGACG+AGG - Chr7:86844346-86844365 MsG0780041119.01.T01:intron 45.0%
!! AAGAATAAAAAAATAAATAA+AGG + Chr7:86843323-86843342 None:intergenic 5.0%
!! AGAATAAAAAAATAAATAAA+GGG + Chr7:86843322-86843341 None:intergenic 5.0%
AACGACAGCGACTTCAAGCA+AGG + Chr7:86843906-86843925 None:intergenic 50.0%
AATAATAGCTCGACGCGTGG+AGG - Chr7:86841818-86841837 MsG0780041119.01.T01:three_prime_UTR 50.0%
ACCCGCATTTGCAACCAAAG+TGG + Chr7:86841935-86841954 None:intergenic 50.0%
AGGAATAATAGCTCGACGCG+TGG - Chr7:86841815-86841834 MsG0780041119.01.T01:three_prime_UTR 50.0%
ATCCCATCTTGGGTCTGCTA+GGG - Chr7:86843497-86843516 MsG0780041119.01.T01:intron 50.0%
ATCCCTAGCAGACCCAAGAT+GGG + Chr7:86843502-86843521 None:intergenic 50.0%
CGAGATAGGATTGCTAGCCA+AGG + Chr7:86843856-86843875 None:intergenic 50.0%
CGAGCTGGAAGAAGAAGAAG+CGG + Chr7:86842673-86842692 None:intergenic 50.0%
CGTGTTCTATGTCACGTGCT+AGG + Chr7:86842586-86842605 None:intergenic 50.0%
CTGTTACCCCTGTCATTGCT+TGG - Chr7:86843724-86843743 MsG0780041119.01.T01:intron 50.0%
GAAGGGAAAATTTGGCTGGG+TGG + Chr7:86842636-86842655 None:intergenic 50.0%
GGAGGATCTTCCTGTTGAAG+TGG - Chr7:86843461-86843480 MsG0780041119.01.T01:CDS 50.0%
GGATTACTGAGGGACTCTTG+TGG - Chr7:86841839-86841858 MsG0780041119.01.T01:three_prime_UTR 50.0%
TACCTTCTTGTCCGTCTTGC+CGG + Chr7:86844773-86844792 None:intergenic 50.0%
TATCCCATCTTGGGTCTGCT+AGG - Chr7:86843496-86843515 MsG0780041119.01.T01:intron 50.0%
TTACTGAGGGACTCTTGTGG+TGG - Chr7:86841842-86841861 MsG0780041119.01.T01:three_prime_UTR 50.0%
! TGGGTAGCTGGACTTTTGGA+AGG - Chr7:86844545-86844564 MsG0780041119.01.T01:intron 50.0%
! TGTTAGGCGCTGCAATCCTT+TGG + Chr7:86843676-86843695 None:intergenic 50.0%
ATCCGGCAAGACGGACAAGA+AGG - Chr7:86844768-86844787 MsG0780041119.01.T01:intron 55.0%
CATCCCTAGCAGACCCAAGA+TGG + Chr7:86843503-86843522 None:intergenic 55.0%
GACGCGTGGAGGATTACTGA+GGG - Chr7:86841829-86841848 MsG0780041119.01.T01:three_prime_UTR 55.0%
TTCGGCTCAACACCCGAGAT+AGG + Chr7:86843870-86843889 None:intergenic 55.0%
CGACGCGTGGAGGATTACTG+AGG - Chr7:86841828-86841847 MsG0780041119.01.T01:three_prime_UTR 60.0%
CGGCTCTCTCCTCAGACGAA+GGG + Chr7:86842653-86842672 None:intergenic 60.0%
TATCCCGGACCCTGCGTAAG+CGG - Chr7:86843279-86843298 MsG0780041119.01.T01:CDS 60.0%
TCGGGGAGAGAGAGAGAGAG+CGG + Chr7:86842714-86842733 None:intergenic 60.0%
ATCCCGGACCCTGCGTAAGC+GGG - Chr7:86843280-86843299 MsG0780041119.01.T01:CDS 65.0%
CGGGGAGAGAGAGAGAGAGC+GGG + Chr7:86842713-86842732 None:intergenic 65.0%
GAGAGAGAGAGAGAGCGGGG+GGG + Chr7:86842709-86842728 None:intergenic 65.0%
GCGGCTCTCTCCTCAGACGA+AGG + Chr7:86842654-86842673 None:intergenic 65.0%
GGAGAGAGAGAGAGAGCGGG+GGG + Chr7:86842710-86842729 None:intergenic 65.0%
GGGAGAGAGAGAGAGAGCGG+GGG + Chr7:86842711-86842730 None:intergenic 65.0%
GGGGAGAGAGAGAGAGAGCG+GGG + Chr7:86842712-86842731 None:intergenic 65.0%
TGCACGCTCCCGCTTACGCA+GGG + Chr7:86843291-86843310 None:intergenic 65.0%
AGAGAGAGAGAGCGGGGGGG+CGG + Chr7:86842706-86842725 None:intergenic 70.0%
CTCCCGCTTACGCAGGGTCC+GGG + Chr7:86843285-86843304 None:intergenic 70.0%
GCTCCCGCTTACGCAGGGTC+CGG + Chr7:86843286-86843305 None:intergenic 70.0%
GTGCACGCTCCCGCTTACGC+AGG + Chr7:86843292-86843311 None:intergenic 70.0%
! CGTAAGCGGGAGCGTGCACC+GGG - Chr7:86843293-86843312 MsG0780041119.01.T01:CDS 70.0%
! GCGTAAGCGGGAGCGTGCAC+CGG - Chr7:86843292-86843311 MsG0780041119.01.T01:CDS 70.0%
AGAGAGAGAGCGGGGGGGCG+GGG + Chr7:86842704-86842723 None:intergenic 75.0%
GAGAGAGAGAGCGGGGGGGC+GGG + Chr7:86842705-86842724 None:intergenic 75.0%
! AGAGAGAGCGGGGGGGCGGG+GGG + Chr7:86842702-86842721 None:intergenic 80.0%
! GAGAGAGAGCGGGGGGGCGG+GGG + Chr7:86842703-86842722 None:intergenic 80.0%
! GGCGGGGGGAGAGAGCGAGC+TGG + Chr7:86842688-86842707 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 86841758 86845159 86841758 ID=MsG0780041119.01;Name=MsG0780041119.01
Chr7 mRNA 86841758 86845159 86841758 ID=MsG0780041119.01.T01;Parent=MsG0780041119.01;Name=MsG0780041119.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0|0.5|0.5|1|1|2|441|469
Chr7 exon 86841758 86843481 86841758 ID=MsG0780041119.01.T01:exon:11965;Parent=MsG0780041119.01.T01
Chr7 exon 86845033 86845159 86845033 ID=MsG0780041119.01.T01:exon:11964;Parent=MsG0780041119.01.T01
Chr7 CDS 86845033 86845159 86845033 ID=MsG0780041119.01.T01:cds;Parent=MsG0780041119.01.T01
Chr7 CDS 86842199 86843481 86842199 ID=MsG0780041119.01.T01:cds;Parent=MsG0780041119.01.T01
Chr7 three_prime_UTR 86841758 86842198 86841758 ID=MsG0780041119.01.T01:three_prime_utr;Parent=MsG0780041119.01.T01
Gene Sequence

>MsG0780041119.01.T01

ATGAATCCTCCATCTAATGGTACCTATGAATTCAATGTAGATTGGTCTCGTATTAAGAGGAATAATAGCTCGACGCGTGGAGGATTACTGAGGGACTCTTGTGGTGGCCTTAATGAAAGATTTTATTGTTCTGTTAAATTATTTTATGCGATGGAGGATCTTCCTGTTGAAGTGGTCGGTATCATATTATCCCATCTTGGGTCTGCTAGGGATGTTCTGATTGCATCCTTAACTTGCAAGAAATGGAGAGAAGCTTGGCAGAATCACCTCCAAACTCTTTCATTCAATACATCTGACTGGCCCCTATATCGCGAAATTTGCTCTAGTCACTTGGAAATGCTCATTACTTGTACACTTTTTCAAACCAAAGGATTGCAGCGCCTAACAATTTTCATGGATGATGAGCATGAGTTTTCTGTTACCCCTGTCATTGCTTGGCTTATGTATACGAGGGATTCATTGCGCGAGCTACGTTATAATGTGAGAACATCCCCTAATTTCAATATCATTGAGAAATGCAGCAGGAAAAAGTTGGAGGTTTTGACCTTGGCTAGCAATCCTATCTCGGGTGTTGAGCCGAAGTATCATAAATTTCCTTGCTTGAAGTCGCTGTCGTTGAGTTTTGTTAGCATCTCAGCGTTGGATTTGAGTCTTCTGCTTTCTGCTTGTCCGAAACTTGAAACCTTGTCTATTGTTTGTCCAGAAATCGCTATGTCAGATTCAGAGGCTTCAATAGAGCTTAGCAGCTCTTCTTTGAAGGATTTCTTTGTCGAGTCATATAGTTTTGATAAACTCATATTAGTGGCGGATATGCTCGAGAATCTGCATCTGAAAGATTGTTCCTTTGATGCTTTTGAATTGATCAATAAGGGGACATTGAAAGTATTGAAGCTTGATGATGTTAGTGTCATCCATCTTGACATTGGAGATAATACAGAAAACCTTGAGATCGTAGATGTGTGTAACTTCATATTTATGTGGCAAAATTTTTATAATATGATCTCAAAAGCGTCGAAGTTAAAAAAGCTTCGGCTGTGGAGTGTTGTTTTTGACGACGAGGATGAGGTTGTTGATATAGAGACCATATCTGTTTGTTTTCCTAGATTAACGCACCTTTCCTTAAGTTATGACTTGAAAGATGGAGTGCTTCATTATGGCTTGCAAGGGTTGTCTTTTCTGATGAATGTGGTTGTGTTAGAACTTGGATGGACTACAATCAGTGATCTTTTCTCAGTTTGGGTAGCTGGACTTTTGGAAGGATGTCCTAATCTTAAAAAGATGGTCATTTATGGCTATGTTGCTGAGATCAAAACACATGAAGAGTGTCAAACTTTTACCAAATTCACTGAATTCATGATTCAACTAGGAAGAAAATATAGTCATATAAAGTTCGAGTTTGAATATGAGTAG

Protein sequence

>MsG0780041119.01.T01

MNPPSNGTYEFNVDWSRIKRNNSSTRGGLLRDSCGGLNERFYCSVKLFYAMEDLPVEVVGIILSHLGSARDVLIASLTCKKWREAWQNHLQTLSFNTSDWPLYREICSSHLEMLITCTLFQTKGLQRLTIFMDDEHEFSVTPVIAWLMYTRDSLRELRYNVRTSPNFNIIEKCSRKKLEVLTLASNPISGVEPKYHKFPCLKSLSLSFVSISALDLSLLLSACPKLETLSIVCPEIAMSDSEASIELSSSSLKDFFVESYSFDKLILVADMLENLHLKDCSFDAFELINKGTLKVLKLDDVSVIHLDIGDNTENLEIVDVCNFIFMWQNFYNMISKASKLKKLRLWSVVFDDEDEVVDIETISVCFPRLTHLSLSYDLKDGVLHYGLQGLSFLMNVVVLELGWTTISDLFSVWVAGLLEGCPNLKKMVIYGYVAEIKTHEECQTFTKFTEFMIQLGRKYSHIKFEFEYE*