AlfalfaGEDB | MsG0480018159.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018159.01

KEGG: -
GO: GO:0005759
PFAM: PF02330

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018159.01.T01	RYQ87176.1	60.304	461	165	5	1	458	1	446	1.40E-163	479

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018159.01.T01	Q8W487	32.692	156	103	1	304	457	95	250	2.88E-21	95.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018159.01.T01	A0A444XBW0	60.304	461	165	5	1	458	1	446	6.66e-164	479

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048817.01	MsG0480018159.01	0.819514	1.115805e-52	8.604851e-50
MsG0080049148.01	MsG0480018159.01	0.821921	3.122289e-53	2.575087e-50
MsG0180000139.01	MsG0480018159.01	0.833803	4.322564e-56	5.033088e-53
MsG0180000365.01	MsG0480018159.01	-0.800595	1.338704e-48	6.258157e-46
MsG0180000444.01	MsG0480018159.01	0.824999	5.952514e-54	5.358574e-51
MsG0180000828.01	MsG0480018159.01	0.810538	1.096698e-50	6.628218e-48
MsG0180001131.01	MsG0480018159.01	0.825000	5.950681e-54	5.357044e-51
MsG0180001141.01	MsG0480018159.01	0.850739	1.397699e-60	2.764878e-57
MsG0180001172.01	MsG0480018159.01	0.818325	2.078835e-52	1.551242e-49
MsG0180001892.01	MsG0480018159.01	0.804177	2.447715e-49	1.253617e-46

Showing 1 to 10 of 120 entries

Previous1 2 3 4 5…12Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018159.01.T01	MTR_8g060830	93.939	264	14	1	1	264	1	262	2.39e-154	438
MsG0480018159.01.T01	MTR_4g006550	92.803	264	17	1	1	264	1	262	5.42e-150	427
MsG0480018159.01.T01	MTR_4g006560	94.444	162	9	0	297	458	76	237	1.28e-110	326
MsG0480018159.01.T01	MTR_1g013120	44.848	165	84	4	297	457	72	233	7.14e-45	157
MsG0480018159.01.T01	MTR_5g080880	38.506	174	91	4	298	456	82	254	5.99e-27	110
MsG0480018159.01.T01	MTR_7g063520	37.037	162	90	4	304	457	97	254	2.54e-26	107
MsG0480018159.01.T01	MTR_5g080870	28.289	152	96	3	304	455	80	218	3.23e-11	65.1

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018159.01.T01	AT1G15870	58.896	163	64	2	297	458	82	242	5.57e-66	212
MsG0480018159.01.T01	AT1G80720	57.927	164	64	3	297	458	30	190	2.32e-59	193
MsG0480018159.01.T01	AT1G80720	57.927	164	64	3	297	458	82	242	4.37e-59	194
MsG0480018159.01.T01	AT4G31930	42.945	163	90	3	297	457	73	234	1.61e-39	142
MsG0480018159.01.T01	AT1G80700	43.373	166	91	2	12	177	13	175	8.30e-31	118
MsG0480018159.01.T01	AT1G80980	43.373	166	91	2	12	177	13	175	2.01e-30	117
MsG0480018159.01.T01	AT1G80980	43.373	166	91	2	12	177	13	175	2.01e-30	117
MsG0480018159.01.T01	AT3G55605	34.146	164	96	3	304	457	97	258	1.86e-23	99.8
MsG0480018159.01.T01	AT2G39795	32.692	156	103	1	304	457	95	250	2.93e-22	95.9
MsG0480018159.01.T01	AT5G02050	33.333	156	95	3	311	457	112	267	4.90e-22	95.9

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 108 sgRNAs with CRISPR-Local

Find 579 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAGATCATAGGATGGA+TGG	0.515569	4:+1023040	MsG0480018159.01.T01:CDS
AACAGCTCCATCAAACATGG+TGG	0.722000	4:-1022455	None:intergenic
AAGGAGAAAACAGAGATCAT+AGG	0.519039	4:+1023032	MsG0480018159.01.T01:CDS
AAGTAAACTTACTCAAAGTC+AGG	0.487021	4:-1022670	None:intergenic
AAGTACAAAAGGCACTTCTC+TGG	0.386193	4:-1016460	None:intergenic
AATCACTTCATAGGAAGTGG+AGG	0.644797	4:+1017635	MsG0480018159.01.T01:intron
AATCATGTGCTCTGCTTGGC+CGG	0.413847	4:+1022579	MsG0480018159.01.T01:CDS
AATCTTCCCCTACGTCAAAG+CGG	0.687525	4:-1018274	None:intergenic
AATGAACCGAACTTGTCAGT+AGG	0.644093	4:-1022355	None:intergenic
AATGTAATCCATCGCTCACC+GGG	0.484386	4:-1022394	None:intergenic

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAGTGAAAAGGTGAAT+GGG	-	Chr4:1014134-1014153	None:intergenic	30.0%
AAAATACTTACAGGATTGGA+AGG	-	Chr4:1019770-1019789	None:intergenic	30.0%
AAATAAGCTCAAAACGGTTT+AGG	+	Chr4:1020174-1020193	MsG0480018159.01.T01:intron	30.0%
AAATAGGCCAAAACTTATGA+AGG	-	Chr4:1015564-1015583	None:intergenic	30.0%
AAGAACTGAGATATTGAATG+TGG	+	Chr4:1018599-1018618	MsG0480018159.01.T01:intron	30.0%
AAGTAAACTTACTCAAAGTC+AGG	-	Chr4:1022673-1022692	None:intergenic	30.0%
AATAGCCGAATTTGAACAAA+TGG	+	Chr4:1022770-1022789	MsG0480018159.01.T01:intron	30.0%
AATGGGAATTTGGTTGATTA+GGG	-	Chr4:1019597-1019616	None:intergenic	30.0%
AATTATGCTTGAAGGAAATG+AGG	+	Chr4:1015065-1015084	MsG0480018159.01.T01:intron	30.0%
AATTTCATTACGAAGAAGTC+TGG	-	Chr4:1019723-1019742	None:intergenic	30.0%

Showing 1 to 10 of 579 entries

Previous1 2 3 4 5…58Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	1013992	1023094	1013992	ID=MsG0480018159.01;Name=MsG0480018159.01
Chr4	mRNA	1013992	1023094	1013992	ID=MsG0480018159.01.T01;Parent=MsG0480018159.01;Name=MsG0480018159.01.T01;_AED=0.41;_eAED=0.41;_QI=168\|0.62\|0.55\|1\|0.75\|0.66\|9\|0\|458
Chr4	exon	1013992	1014034	1013992	ID=MsG0480018159.01.T01:exon:418;Parent=MsG0480018159.01.T01
Chr4	exon	1014055	1014115	1014055	ID=MsG0480018159.01.T01:exon:419;Parent=MsG0480018159.01.T01
Chr4	exon	1016316	1016624	1016316	ID=MsG0480018159.01.T01:exon:420;Parent=MsG0480018159.01.T01
Chr4	exon	1016780	1016829	1016780	ID=MsG0480018159.01.T01:exon:421;Parent=MsG0480018159.01.T01
Chr4	exon	1016959	1017011	1016959	ID=MsG0480018159.01.T01:exon:422;Parent=MsG0480018159.01.T01
Chr4	exon	1017648	1018090	1017648	ID=MsG0480018159.01.T01:exon:423;Parent=MsG0480018159.01.T01
Chr4	exon	1018256	1018352	1018256	ID=MsG0480018159.01.T01:exon:424;Parent=MsG0480018159.01.T01
Chr4	exon	1022355	1022680	1022355	ID=MsG0480018159.01.T01:exon:425;Parent=MsG0480018159.01.T01
Chr4	exon	1022932	1023094	1022932	ID=MsG0480018159.01.T01:exon:426;Parent=MsG0480018159.01.T01
Chr4	five_prime_UTR	1013992	1014034	1013992	ID=MsG0480018159.01.T01:five_prime_utr;Parent=MsG0480018159.01.T01
Chr4	five_prime_UTR	1014055	1014115	1014055	ID=MsG0480018159.01.T01:five_prime_utr;Parent=MsG0480018159.01.T01
Chr4	five_prime_UTR	1016316	1016379	1016316	ID=MsG0480018159.01.T01:five_prime_utr;Parent=MsG0480018159.01.T01
Chr4	CDS	1016380	1016624	1016380	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01
Chr4	CDS	1016780	1016829	1016780	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01
Chr4	CDS	1016959	1017011	1016959	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01
Chr4	CDS	1017648	1018090	1017648	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01
Chr4	CDS	1018256	1018352	1018256	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01
Chr4	CDS	1022355	1022680	1022355	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01
Chr4	CDS	1022932	1023094	1022932	ID=MsG0480018159.01.T01:cds;Parent=MsG0480018159.01.T01

Gene Sequence

>MsG0480018159.01.T01

ATGTTTGGCAGCGGAAGGAGGTGGTTGCGCTTTGTGCAATTCAAGCTTTATCCAACAACATCATTATGCAACAAATCTGCCCAGAGAAGTGCCTTTTGTACTTCGGCAAAGAACAACAACAACAACAACAACAACAATAACAAGGTCGTCATCACTGATGAAAGGTATCAGCAGCTCGAAAATCTCAACATGATGACCGCCCTCAAGATGCTTTTCACTGATCCCCCAAAGAAGAAAAAGTTTGGGTTTGATTTCCATCTTGTGCAATTTTTTTTTGCCTGCATGCCTTCCTTGGCTGTATATTTGGTGGCTCAGTACGCTCGTTATGAAATCAGAAGAATGGAAGCGGAAGTGGAGGAGAAAAGGAAGCAGAAGGAAGAAGAAGAAGCAAAGGAGAAAGAAAAAGAATTGGAACTAAATCCCCCTGAGGAAAAGGATAAACCTGATCCCCAGCTGTCAGAGATGAAAGAGAGACTTGAGAAACTTGAAGAGACTGTAAAGGAGATTGCTGTTGTAAAAAAGAAACAATCAACCAGTAACATAGACACAAATCAGGTAACTGGTGATGAGAAAAAATCCATAAATTTGTCTGCACCAAGTAACACGAGTGGCAGTTCAGTAACTATTAAACCAGTCGAACAAGACAGTGTTGGTAAGGATAATTCTCTCAAGTCAAGGACAGAATTAGATGAAGAAAGTAAGGGTTCAGTGGCAACTCCAAGTTCTTTTCTTAGGCTTTGTTTGCGTGTTTGGAGGGGAAGGGAAAGGAGGGCTTTGGAAAAAAGGGAAGAGATACTGAACCTGTCGTCCCGCTTTGACGTAGGGGAAGATTTTGAGTTTATTGTAAGGAAGGAAATTTTAAATGGGAAAGCTATCTTTGGTGCATTACCTACTGACAAGTTCGGTTCATTTGTGGTGGATGGCCGACCCGGTGAGCGATGGATTACATTGAAAAGACAATTTGCCAATGAAAACATTAAGGTTGAAGCCACCATGTTTGATGGAGCTGTTCCTGCTCCGAAAAAAAGCGGTGGTGTGGCTAATGCAGATGAAGTGCAGCTACACATTACCTTAATTGTCAATATCTCCAAGGGAGATGGTCATGTGCTGGAAATCATGTGCTCTGCTTGGCCGGACAGTATAGTGATAAAAAGGCTGCTCGTTCGCGAAAACAAAAATATGACAGCTGAGCCCTATGCTGGTCCTGACTTTGAGGAACTGGATGATGAGTTGCAGGATAGTCTTTACGATTTCTTGGAAGTAAGGGGTATAAATGATGAACTTGTCAAATACTTGCATCAGTACATGAAACACAAGGAGAAAACAGAGATCATAGGATGGATGGAGAAGGTTAAATCTTATATCGAGAAGAAGTAA

Protein sequence

>MsG0480018159.01.T01

MFGSGRRWLRFVQFKLYPTTSLCNKSAQRSAFCTSAKNNNNNNNNNNKVVITDERYQQLENLNMMTALKMLFTDPPKKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYEIRRMEAEVEEKRKQKEEEEAKEKEKELELNPPEEKDKPDPQLSEMKERLEKLEETVKEIAVVKKKQSTSNIDTNQVTGDEKKSINLSAPSNTSGSSVTIKPVEQDSVGKDNSLKSRTELDEESKGSVATPSSFLRLCLRVWRGRERRALEKREEILNLSSRFDVGEDFEFIVRKEILNGKAIFGALPTDKFGSFVVDGRPGERWITLKRQFANENIKVEATMFDGAVPAPKKSGGVANADEVQLHITLIVNISKGDGHVLEIMCSAWPDSIVIKRLLVRENKNMTAEPYAGPDFEELDDELQDSLYDFLEVRGINDELVKYLHQYMKHKEKTEIIGWMEKVKSYIEKK*