AlfalfaGEDB | MsG0480018613.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018613.01

KEGG: -
GO: -
PFAM: PF03140

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018613.01.T01	GAU13963.1	85.275	455	67	0	1	455	7	461	0	831

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018613.01.T01	Q9SD53	23.044	473	265	13	11	449	44	451	1.53E-21	100

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018613.01.T01	A0A1S3EDI6	79.560	455	93	0	1	455	14	468	0.0	776

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003484.01	MsG0480018613.01	0.800721	1.262008e-48	5.918386e-46
MsG0480018613.01	MsG0480021433.01	0.801718	7.887222e-49	3.793326e-46
MsG0480018613.01	MsG0580025431.01	0.800213	1.601436e-48	7.414268e-46
MsG0480018613.01	MsG0580027337.01	0.802184	6.327200e-49	3.079316e-46
MsG0480018613.01	MsG0680033467.01	0.801326	9.490784e-49	4.519692e-46
MsG0480018613.01	MsG0680034418.01	0.815587	8.563214e-52	5.928168e-49
MsG0480018613.01	MsG0780039916.01	0.835412	1.703392e-56	2.081458e-53
MsG0480018613.01	MsG0780040497.01	0.807034	6.155211e-50	3.392549e-47
MsG0480018613.01	MsG0780041397.01	0.802654	5.062831e-49	2.493644e-46
MsG0480018613.01	MsG0880047714.01	0.802008	6.877984e-49	3.332399e-46
MsG0380016485.01	MsG0480018613.01	0.814977	1.170300e-51	7.967573e-49
MsG0380018004.01	MsG0480018613.01	0.806676	7.327535e-50	4.001292e-47
MsG0280007199.01	MsG0480018613.01	0.800479	1.413746e-48	6.589447e-46
MsG0280009232.01	MsG0480018613.01	0.823465	1.365312e-53	1.176435e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018613.01.T01	MTR_4g015410	70.927	399	87	3	59	455	1	372	0.0	583
MsG0480018613.01.T01	MTR_1g040690	62.419	463	157	9	1	452	15	471	0.0	558
MsG0480018613.01.T01	MTR_4g015450	92.857	280	20	0	177	456	195	474	0.0	548
MsG0480018613.01.T01	MTR_4g015290	72.691	249	27	2	1	249	16	223	2.48e-119	348
MsG0480018613.01.T01	MTR_1g038270	43.701	508	202	13	1	444	10	497	1.32e-114	346
MsG0480018613.01.T01	MTR_7g068160	30.571	543	249	16	1	452	24	529	2.06e-62	211
MsG0480018613.01.T01	MTR_7g068070	28.752	553	255	16	1	449	17	534	1.30e-52	186
MsG0480018613.01.T01	MTR_7g067970	29.061	554	251	19	1	452	17	530	4.75e-52	184
MsG0480018613.01.T01	MTR_0067s0010	29.835	486	264	17	1	452	31	473	5.24e-52	182
MsG0480018613.01.T01	MTR_7g067600	29.236	537	258	21	2	452	16	516	1.49e-50	179
MsG0480018613.01.T01	MTR_3g466740	30.123	488	266	18	1	452	18	466	9.36e-50	176
MsG0480018613.01.T01	MTR_7g067940	31.034	464	203	12	2	366	18	463	2.69e-49	176
MsG0480018613.01.T01	MTR_7g067750	29.602	527	266	16	1	455	51	544	5.61e-49	176
MsG0480018613.01.T01	MTR_7g067300	31.490	416	208	14	4	366	11	402	1.65e-46	167
MsG0480018613.01.T01	MTR_7g067880	27.799	536	256	21	1	446	17	511	2.10e-46	168
MsG0480018613.01.T01	MTR_5g086340	28.817	465	243	20	14	454	33	433	2.64e-33	131
MsG0480018613.01.T01	MTR_6g010890	24.477	478	273	17	1	454	13	426	8.22e-28	115
MsG0480018613.01.T01	MTR_3g079390	24.124	485	265	16	1	449	28	445	8.41e-28	115
MsG0480018613.01.T01	MTR_8g005285	26.699	412	235	11	2	356	25	426	2.06e-26	112
MsG0480018613.01.T01	MTR_7g067990	29.412	374	168	13	149	452	242	589	3.21e-25	108
MsG0480018613.01.T01	MTR_7g067990	38.806	134	72	4	1	133	12	136	3.29e-17	84.7
MsG0480018613.01.T01	MTR_2g041180	26.722	363	201	10	11	348	48	370	1.62e-23	103
MsG0480018613.01.T01	MTR_6g010920	22.678	463	283	15	1	454	13	409	4.05e-23	101
MsG0480018613.01.T01	MTR_8g005295	25.783	415	227	11	13	356	36	440	2.42e-22	100
MsG0480018613.01.T01	MTR_6g011060	23.028	469	256	16	13	452	25	417	2.95e-22	99.0
MsG0480018613.01.T01	MTR_6g009590	23.929	397	243	13	1	381	13	366	3.16e-22	99.0
MsG0480018613.01.T01	MTR_2g036320	26.997	363	199	12	11	348	65	386	4.77e-22	99.0
MsG0480018613.01.T01	MTR_0024s0080	25.789	380	224	16	15	381	27	361	8.25e-21	94.7
MsG0480018613.01.T01	MTR_5g016570	24.897	486	256	19	14	452	102	525	3.89e-20	93.6
MsG0480018613.01.T01	MTR_7g067660	30.804	224	106	10	247	443	175	376	4.53e-20	92.0
MsG0480018613.01.T01	MTR_7g067660	34.426	183	104	6	1	178	4	175	4.49e-19	89.0
MsG0480018613.01.T01	MTR_6g010810	25.684	475	252	19	1	452	10	406	4.96e-20	92.4
MsG0480018613.01.T01	MTR_8g006525	25.333	375	225	12	13	361	28	373	5.02e-20	92.4
MsG0480018613.01.T01	MTR_0209s0060	25.698	358	228	7	13	351	29	367	7.88e-20	91.7
MsG0480018613.01.T01	MTR_0209s0030	25.698	358	228	7	13	351	29	367	7.88e-20	91.7
MsG0480018613.01.T01	MTR_8g005235	25.260	384	227	14	13	367	27	379	3.44e-19	90.1
MsG0480018613.01.T01	MTR_3g107590	25.587	383	235	15	13	379	26	374	8.59e-19	88.6
MsG0480018613.01.T01	MTR_6g009610	23.797	395	246	14	1	381	13	366	1.08e-18	88.2
MsG0480018613.01.T01	MTR_7g068040	34.807	181	81	4	8	188	12	155	8.12e-18	80.9
MsG0480018613.01.T01	MTR_6g011050	24.512	461	272	18	5	454	14	409	8.22e-18	85.5
MsG0480018613.01.T01	MTR_8g005225	23.560	382	214	12	13	351	37	383	2.11e-17	84.7
MsG0480018613.01.T01	MTR_8g005325	24.359	390	213	13	13	360	56	405	2.80e-17	84.3
MsG0480018613.01.T01	MTR_6g009170	23.810	399	241	14	1	378	13	369	3.68e-17	83.6
MsG0480018613.01.T01	MTR_7g060020	25.450	389	233	15	21	384	39	395	1.33e-16	82.0
MsG0480018613.01.T01	MTR_5g086230	35.465	172	85	9	14	178	29	181	5.25e-16	77.0
MsG0480018613.01.T01	MTR_8g005265	24.619	394	224	13	11	363	25	386	1.03e-15	79.3
MsG0480018613.01.T01	MTR_8g037923	24.341	493	276	23	7	450	23	467	1.36e-15	79.3
MsG0480018613.01.T01	MTR_6g010850	23.209	349	201	11	113	448	49	343	4.15e-14	73.9
MsG0480018613.01.T01	MTR_7g060260	23.529	391	217	16	23	379	38	380	1.09e-11	67.0
MsG0480018613.01.T01	MTR_7g060310	26.201	229	125	8	228	452	298	486	5.96e-11	64.7
MsG0480018613.01.T01	MTR_4g009620	25.991	227	131	6	12	221	41	247	7.60e-11	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018613.01.T01	AT3G50150	26.271	472	251	18	15	452	92	500	2.39e-32	129
MsG0480018613.01.T01	AT4G31980	26.739	460	241	16	13	452	293	676	2.38e-29	121
MsG0480018613.01.T01	AT5G11290	24.615	455	253	14	13	449	33	415	3.07e-29	119
MsG0480018613.01.T01	AT3G50180	27.719	469	241	22	15	453	180	580	1.10e-28	119
MsG0480018613.01.T01	AT3G50170	25.311	482	250	17	15	452	115	530	1.52e-28	118
MsG0480018613.01.T01	AT3G50160	26.711	453	251	17	15	452	106	492	1.66e-27	115
MsG0480018613.01.T01	AT3G47250	26.078	487	245	19	12	455	60	474	6.31e-25	107
MsG0480018613.01.T01	AT3G47250	26.078	487	245	19	12	455	60	474	6.31e-25	107
MsG0480018613.01.T01	AT3G47250	26.078	487	245	19	12	455	60	474	6.31e-25	107
MsG0480018613.01.T01	AT3G50120	24.481	482	256	17	15	452	105	522	1.82e-24	106
MsG0480018613.01.T01	AT3G50140	24.074	486	253	20	15	453	115	531	1.10e-23	104
MsG0480018613.01.T01	AT2G36430	23.352	364	215	10	12	351	44	367	2.70e-23	102
MsG0480018613.01.T01	AT3G47200	23.044	473	265	13	11	449	44	451	1.56e-22	100
MsG0480018613.01.T01	AT3G47200	23.044	473	265	13	11	449	44	451	1.56e-22	100
MsG0480018613.01.T01	AT1G67150	24.043	470	262	17	8	452	2	401	9.34e-22	97.4
MsG0480018613.01.T01	AT1G67150	24.043	470	262	17	8	452	2	401	9.34e-22	97.4
MsG0480018613.01.T01	AT5G22550	23.307	502	261	17	13	453	44	482	2.38e-21	97.1
MsG0480018613.01.T01	AT1G67150	24.051	474	261	17	8	452	2	405	2.98e-21	95.9
MsG0480018613.01.T01	AT2G28580	25.652	460	251	21	13	452	109	497	4.94e-21	96.3
MsG0480018613.01.T01	AT2G28580	25.652	460	251	21	13	452	123	511	5.55e-21	95.9
MsG0480018613.01.T01	AT3G50130	26.400	375	204	15	15	351	141	481	1.50e-20	94.7
MsG0480018613.01.T01	AT2G28580	25.996	477	249	23	11	452	39	446	1.85e-20	94.0
MsG0480018613.01.T01	AT2G28580	26.105	475	247	23	13	452	109	514	1.91e-20	94.4
MsG0480018613.01.T01	AT2G28580	26.105	475	247	23	13	452	123	528	2.29e-20	94.4
MsG0480018613.01.T01	AT1G65985	25.065	387	214	13	9	346	10	369	2.55e-20	93.6
MsG0480018613.01.T01	AT1G65985	25.065	387	214	13	9	346	10	369	2.55e-20	93.6
MsG0480018613.01.T01	AT3G50190	24.009	454	262	18	15	452	98	484	2.56e-20	94.0
MsG0480018613.01.T01	AT5G22540	23.757	362	220	9	11	351	29	355	9.89e-20	91.7
MsG0480018613.01.T01	AT2G44930	24.622	463	274	20	13	452	84	494	2.13e-19	91.3
MsG0480018613.01.T01	AT3G50150	27.097	310	162	13	15	293	92	368	1.29e-17	85.5
MsG0480018613.01.T01	AT2G28580	26.702	382	209	19	11	359	121	464	9.55e-17	82.8
MsG0480018613.01.T01	AT3G47210	25.137	366	224	14	11	360	91	422	2.38e-16	81.6
MsG0480018613.01.T01	AT3G50170	24.375	320	165	12	15	293	115	398	9.88e-14	73.2
MsG0480018613.01.T01	AT3G60470	30.319	188	101	6	15	184	34	209	9.90e-14	73.6
MsG0480018613.01.T01	AT3G60470	23.022	278	168	5	181	452	296	533	1.22e-12	70.1
MsG0480018613.01.T01	AT3G44710	25.683	183	115	5	29	211	64	225	2.34e-12	69.3

Find 81 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTACAAATCTTCGTGCTTC+TGG	0.131006	4:+7462597	MsG0480018613.01.T01:CDS
CTTGGGAGCAAAGCAAAATT+TGG	0.188159	4:+7462778	MsG0480018613.01.T01:CDS
GTGGAAATTCATAGGAATTT+TGG	0.230849	4:+7463154	MsG0480018613.01.T01:CDS
ATTGAATTACTTCAAGAAAA+AGG	0.273227	4:+7462864	MsG0480018613.01.T01:CDS
TTTGAGATCCTTATGTACTA+TGG	0.321621	4:+7463086	MsG0480018613.01.T01:CDS
CTACAAATCTTCGTGCTTCT+GGG	0.327041	4:+7462598	MsG0480018613.01.T01:CDS
TTCGCGCATGTAATTCCATT+TGG	0.338341	4:-7462028	None:intergenic
CACAAGACACCTTCAATTAA+TGG	0.341403	4:+7461999	MsG0480018613.01.T01:CDS
ATTTCCACACATTAGGTATA+TGG	0.344748	4:-7463139	None:intergenic
AAATCAAAATCAGCACAAAT+TGG	0.346535	4:+7462650	MsG0480018613.01.T01:CDS
CCTATGAATTTCCACACATT+AGG	0.358392	4:-7463146	None:intergenic
CATTAGACTTGGCGATTACA+TGG	0.371152	4:+7462254	MsG0480018613.01.T01:CDS
AATATAGTTCGTAAAGCCTT+TGG	0.372864	4:+7462456	MsG0480018613.01.T01:CDS
TCTTGTGGCACCTCTATGTA+AGG	0.373541	4:-7461983	None:intergenic
CCTAATGTGTGGAAATTCAT+AGG	0.374315	4:+7463146	MsG0480018613.01.T01:CDS
TTTGCTTCTCGAAGTTTGTC+TGG	0.381265	4:-7461922	None:intergenic
TTCAAATGGAGCTGAACATA+TGG	0.390769	4:+7462947	MsG0480018613.01.T01:CDS
TTGTTCTCAAGAAGTTATAT+AGG	0.391202	4:+7462385	MsG0480018613.01.T01:CDS
TCGCGCATGTAATTCCATTT+GGG	0.394399	4:-7462027	None:intergenic
CAATAGTAACGAAGATTTGT+TGG	0.410152	4:+7462908	MsG0480018613.01.T01:CDS
CATTGATGCCATGTTCTGAT+AGG	0.410400	4:-7463053	None:intergenic
TCGAAGTTTGTCTGGAATGT+TGG	0.420523	4:-7461914	None:intergenic
GCTAAAATAATGATAATAGA+TGG	0.431623	4:+7462210	MsG0480018613.01.T01:CDS
TTATGTACTATGGTCGAAAC+TGG	0.437255	4:+7463096	MsG0480018613.01.T01:CDS
GTCTTTGATTTCACTACCAT+CGG	0.448390	4:-7462418	None:intergenic
TGTTGAAAGATGTTGTTGTT+TGG	0.451590	4:-7462281	None:intergenic
AGTGGAGGAATTTGATTGCT+TGG	0.453828	4:+7462760	MsG0480018613.01.T01:CDS
GTATTTCGCACGATTTCAAA+TGG	0.455814	4:+7462933	MsG0480018613.01.T01:CDS
GTGGAGGAATTTGATTGCTT+GGG	0.458424	4:+7462761	MsG0480018613.01.T01:CDS
GTTGTTTCCTTGATATATAG+TGG	0.458518	4:-7462729	None:intergenic
GTTCCCATTGAAGTGATGTT+GGG	0.460869	4:+7461853	None:intergenic
TGGGTTCTTCCATTAATTGA+AGG	0.468306	4:-7462008	None:intergenic
TTTGGCAGCTGCTATGCTCC+TGG	0.474517	4:+7463172	MsG0480018613.01.T01:CDS
ACCTCTATGTAAGGGTCCTA+TGG	0.476693	4:-7461974	None:intergenic
GAACAAAATCAACAATATGA+AGG	0.484183	4:+7462543	MsG0480018613.01.T01:CDS
AATTAATGGAAGAACCCAAA+TGG	0.496341	4:+7462013	MsG0480018613.01.T01:CDS
AGTTTCGACCATAGTACATA+AGG	0.497587	4:-7463094	None:intergenic
CTCCCGAGCTATTCATCAAA+GGG	0.497707	4:-7462482	None:intergenic
TACCCTTTGATGAATAGCTC+GGG	0.514040	4:+7462480	MsG0480018613.01.T01:CDS
AAAATAGAAGATCAGAGATA+AGG	0.519894	4:+7462082	MsG0480018613.01.T01:CDS
TTTCCTTGATATATAGTGGC+GGG	0.522137	4:-7462725	None:intergenic
TCTTTGATTTCACTACCATC+GGG	0.523312	4:-7462417	None:intergenic
TTACCCTTTGATGAATAGCT+CGG	0.536662	4:+7462479	MsG0480018613.01.T01:CDS
TATCCCGCCACTATATATCA+AGG	0.539545	4:+7462722	MsG0480018613.01.T01:CDS
TCAAAATCAGCACAAATTGG+TGG	0.541328	4:+7462653	MsG0480018613.01.T01:CDS
TTGGAGCTTCTCATTAGACT+TGG	0.547173	4:+7462243	MsG0480018613.01.T01:CDS
CATTAATTGAAGGTGTCTTG+TGG	0.549311	4:-7461998	None:intergenic
TCAGAACATGGCATCAATGT+AGG	0.551206	4:+7463057	MsG0480018613.01.T01:CDS
TAACTTCTTGAGAACAAGGA+AGG	0.553803	4:-7462379	None:intergenic
TGAAGCAAATTAGTCACTGC+GGG	0.555253	4:-7463225	None:intergenic
GATGAATGTGTATGACTACA+AGG	0.559907	4:+7462998	MsG0480018613.01.T01:CDS
CGCGAATTTCTTGATCGGCA+AGG	0.563036	4:+7462045	MsG0480018613.01.T01:CDS
CAAGGGAATGAAAGTCACTA+AGG	0.564793	4:+7463016	MsG0480018613.01.T01:CDS
TCTCAAGAAGTTATATAGGA+AGG	0.565626	4:+7462389	MsG0480018613.01.T01:CDS
CCTCCCGAGCTATTCATCAA+AGG	0.570047	4:-7462483	None:intergenic
ACATGCGCGAATTTCTTGAT+CGG	0.571180	4:+7462040	MsG0480018613.01.T01:CDS
AACAAAATCAACAATATGAA+GGG	0.572350	4:+7462544	MsG0480018613.01.T01:CDS
GTGATTTGTGCTAGCTATGG+TGG	0.575532	4:+7462144	MsG0480018613.01.T01:CDS
TCCATAGGACCCTTACATAG+AGG	0.581201	4:+7461973	MsG0480018613.01.T01:CDS
AGGAAACAACTGAAGTGAAG+TGG	0.585381	4:+7462742	MsG0480018613.01.T01:CDS
GAGATAAGGTTAAGAGAATG+TGG	0.589736	4:+7462096	MsG0480018613.01.T01:CDS
TATATAACTTCTTGAGAACA+AGG	0.592402	4:-7462383	None:intergenic
CTTGTGGCACCTCTATGTAA+GGG	0.592852	4:-7461982	None:intergenic
TCTGCATGATGGTGAGTACC+AGG	0.592926	4:-7463190	None:intergenic
TACAAATCTTCGTGCTTCTG+GGG	0.610114	4:+7462599	MsG0480018613.01.T01:CDS
AAACAACTGAAGTGAAGTGG+AGG	0.617262	4:+7462745	MsG0480018613.01.T01:CDS
AACTTCTTGAGAACAAGGAA+GGG	0.618005	4:-7462378	None:intergenic
TATAGGAAGGTATTTCCCGA+TGG	0.625533	4:+7462402	MsG0480018613.01.T01:CDS
AAAGTGATTTGTGCTAGCTA+TGG	0.635935	4:+7462141	MsG0480018613.01.T01:CDS
CCTTTGATGAATAGCTCGGG+AGG	0.643290	4:+7462483	MsG0480018613.01.T01:CDS
GCGACCATATACCTAATGTG+TGG	0.659261	4:+7463135	MsG0480018613.01.T01:CDS
TGAGTAATATGTCTGCATGA+TGG	0.662734	4:-7463201	None:intergenic
GTTTCCTTGATATATAGTGG+CGG	0.666211	4:-7462726	None:intergenic
ATGTTGGGTTCACTCAATCA+CGG	0.666870	4:+7461868	MsG0480018613.01.T01:CDS
ATGAATGTGTATGACTACAA+GGG	0.671510	4:+7462999	MsG0480018613.01.T01:CDS
TGATTTGTGCTAGCTATGGT+GGG	0.671905	4:+7462145	MsG0480018613.01.T01:CDS
ATTCATCAAAGGGTAACCAA+AGG	0.674926	4:-7462472	None:intergenic
GGGAATGAAAGTCACTAAGG+TGG	0.682429	4:+7463019	MsG0480018613.01.T01:CDS
AATCAAAGACGATTATCGTG+TGG	0.682935	4:+7462431	MsG0480018613.01.T01:CDS
TTTGATGCACTTGTCCACAG+TGG	0.690305	4:+7462521	MsG0480018613.01.T01:CDS
ATGAAGCAAATTAGTCACTG+CGG	0.715770	4:-7463226	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACAAAATCAACAATATGAA+GGG	+	Chr4:7462544-7462563	MsG0480018613.01.T01:CDS	20.0%
!!	ATTGAATTACTTCAAGAAAA+AGG	+	Chr4:7462864-7462883	MsG0480018613.01.T01:CDS	20.0%
!!	GCTAAAATAATGATAATAGA+TGG	+	Chr4:7462210-7462229	MsG0480018613.01.T01:CDS	20.0%
!	AAAAATTACCTATCAGAACA+TGG	+	Chr4:7463045-7463064	MsG0480018613.01.T01:CDS	25.0%
!	AAAATAGAAGATCAGAGATA+AGG	+	Chr4:7462082-7462101	MsG0480018613.01.T01:CDS	25.0%
!	AAACCAAAAAATATCTCCAT+AGG	+	Chr4:7461958-7461977	MsG0480018613.01.T01:CDS	25.0%
!	AAATCAAAATCAGCACAAAT+TGG	+	Chr4:7462650-7462669	MsG0480018613.01.T01:CDS	25.0%
!	GAACAAAATCAACAATATGA+AGG	+	Chr4:7462543-7462562	MsG0480018613.01.T01:CDS	25.0%
!	TATATAACTTCTTGAGAACA+AGG	-	Chr4:7462386-7462405	None:intergenic	25.0%
!	TTGTTCTCAAGAAGTTATAT+AGG	+	Chr4:7462385-7462404	MsG0480018613.01.T01:CDS	25.0%
!!	ACATCTTTTCTTCTCTTTTA+AGG	-	Chr4:7462317-7462336	None:intergenic	25.0%
!!	CTTCTATTTTGTTCTTGTAT+TGG	-	Chr4:7462072-7462091	None:intergenic	25.0%
!!!	AATAGATGGTTGTTTTCTAT+TGG	+	Chr4:7462224-7462243	MsG0480018613.01.T01:CDS	25.0%
!!!	ATTATTTTAGCGATTTCTTC+TGG	-	Chr4:7462201-7462220	None:intergenic	25.0%
!!!	GATATAAGTTTTACTGATTC+TGG	+	Chr4:7462690-7462709	MsG0480018613.01.T01:CDS	25.0%
	AATATAGTTCGTAAAGCCTT+TGG	+	Chr4:7462456-7462475	MsG0480018613.01.T01:CDS	30.0%
	AATTAATGGAAGAACCCAAA+TGG	+	Chr4:7462013-7462032	MsG0480018613.01.T01:CDS	30.0%
	ATGAATGTGTATGACTACAA+GGG	+	Chr4:7462999-7463018	MsG0480018613.01.T01:CDS	30.0%
	ATTTCCACACATTAGGTATA+TGG	-	Chr4:7463142-7463161	None:intergenic	30.0%
	CAATAGTAACGAAGATTTGT+TGG	+	Chr4:7462908-7462927	MsG0480018613.01.T01:CDS	30.0%
	TCTCAAGAAGTTATATAGGA+AGG	+	Chr4:7462389-7462408	MsG0480018613.01.T01:CDS	30.0%
!	GTGGAAATTCATAGGAATTT+TGG	+	Chr4:7463154-7463173	MsG0480018613.01.T01:CDS	30.0%
!	GTTGTTTCCTTGATATATAG+TGG	-	Chr4:7462732-7462751	None:intergenic	30.0%
!	TCTTATGCACTTTTCTTCAA+TGG	+	Chr4:7462819-7462838	MsG0480018613.01.T01:CDS	30.0%
!	TGTTGAAAGATGTTGTTGTT+TGG	-	Chr4:7462284-7462303	None:intergenic	30.0%
!	TTTGAGATCCTTATGTACTA+TGG	+	Chr4:7463086-7463105	MsG0480018613.01.T01:CDS	30.0%
	AACTTCTTGAGAACAAGGAA+GGG	-	Chr4:7462381-7462400	None:intergenic	35.0%
	AATCAAAGACGATTATCGTG+TGG	+	Chr4:7462431-7462450	MsG0480018613.01.T01:CDS	35.0%
	AGTTTCGACCATAGTACATA+AGG	-	Chr4:7463097-7463116	None:intergenic	35.0%
	ATTCATCAAAGGGTAACCAA+AGG	-	Chr4:7462475-7462494	None:intergenic	35.0%
	CACAAGACACCTTCAATTAA+TGG	+	Chr4:7461999-7462018	MsG0480018613.01.T01:CDS	35.0%
	CCTAATGTGTGGAAATTCAT+AGG	+	Chr4:7463146-7463165	MsG0480018613.01.T01:CDS	35.0%
	CCTATGAATTTCCACACATT+AGG	-	Chr4:7463149-7463168	None:intergenic	35.0%
	GAGATAAGGTTAAGAGAATG+TGG	+	Chr4:7462096-7462115	MsG0480018613.01.T01:CDS	35.0%
	GATGAATGTGTATGACTACA+AGG	+	Chr4:7462998-7463017	MsG0480018613.01.T01:CDS	35.0%
	GTATTTCGCACGATTTCAAA+TGG	+	Chr4:7462933-7462952	MsG0480018613.01.T01:CDS	35.0%
	GTTTCCTTGATATATAGTGG+CGG	-	Chr4:7462729-7462748	None:intergenic	35.0%
	TAACTTCTTGAGAACAAGGA+AGG	-	Chr4:7462382-7462401	None:intergenic	35.0%
	TCAAAATCAGCACAAATTGG+TGG	+	Chr4:7462653-7462672	MsG0480018613.01.T01:CDS	35.0%
	TGAGTAATATGTCTGCATGA+TGG	-	Chr4:7463204-7463223	None:intergenic	35.0%
	TGGGTTCTTCCATTAATTGA+AGG	-	Chr4:7462011-7462030	None:intergenic	35.0%
	TTACCCTTTGATGAATAGCT+CGG	+	Chr4:7462479-7462498	MsG0480018613.01.T01:CDS	35.0%
	TTATGTACTATGGTCGAAAC+TGG	+	Chr4:7463096-7463115	MsG0480018613.01.T01:CDS	35.0%
	TTCAAATGGAGCTGAACATA+TGG	+	Chr4:7462947-7462966	MsG0480018613.01.T01:CDS	35.0%
	TTTCCTTGATATATAGTGGC+GGG	-	Chr4:7462728-7462747	None:intergenic	35.0%
!	AAAGTGATTTGTGCTAGCTA+TGG	+	Chr4:7462141-7462160	MsG0480018613.01.T01:CDS	35.0%
!	GTCTTTGATTTCACTACCAT+CGG	-	Chr4:7462421-7462440	None:intergenic	35.0%
!	TCTTTGATTTCACTACCATC+GGG	-	Chr4:7462420-7462439	None:intergenic	35.0%
!!	CATTAATTGAAGGTGTCTTG+TGG	-	Chr4:7462001-7462020	None:intergenic	35.0%
!!!	GGTCCTATGGAGATATTTTT+TGG	-	Chr4:7461964-7461983	None:intergenic	35.0%
!!!	TTGTTGATTTTGTTCCACTG+TGG	-	Chr4:7462538-7462557	None:intergenic	35.0%
!!!	TTTTACTGATTCTGGAGAGT+TGG	+	Chr4:7462698-7462717	MsG0480018613.01.T01:CDS	35.0%
	AAACAACTGAAGTGAAGTGG+AGG	+	Chr4:7462745-7462764	MsG0480018613.01.T01:CDS	40.0%
	ACATGCGCGAATTTCTTGAT+CGG	+	Chr4:7462040-7462059	MsG0480018613.01.T01:CDS	40.0%
	AGGAAACAACTGAAGTGAAG+TGG	+	Chr4:7462742-7462761	MsG0480018613.01.T01:CDS	40.0%
	AGTGGAGGAATTTGATTGCT+TGG	+	Chr4:7462760-7462779	MsG0480018613.01.T01:CDS	40.0%
	ATGTTGGGTTCACTCAATCA+CGG	+	Chr4:7461868-7461887	MsG0480018613.01.T01:CDS	40.0%
	CAAGGGAATGAAAGTCACTA+AGG	+	Chr4:7463016-7463035	MsG0480018613.01.T01:CDS	40.0%
	CATTAGACTTGGCGATTACA+TGG	+	Chr4:7462254-7462273	MsG0480018613.01.T01:CDS	40.0%
	CATTGATGCCATGTTCTGAT+AGG	-	Chr4:7463056-7463075	None:intergenic	40.0%
	CTACAAATCTTCGTGCTTCT+GGG	+	Chr4:7462598-7462617	MsG0480018613.01.T01:CDS	40.0%
	CTTGGGAGCAAAGCAAAATT+TGG	+	Chr4:7462778-7462797	MsG0480018613.01.T01:CDS	40.0%
	GTGGAGGAATTTGATTGCTT+GGG	+	Chr4:7462761-7462780	MsG0480018613.01.T01:CDS	40.0%
	TACAAATCTTCGTGCTTCTG+GGG	+	Chr4:7462599-7462618	MsG0480018613.01.T01:CDS	40.0%
	TACCCTTTGATGAATAGCTC+GGG	+	Chr4:7462480-7462499	MsG0480018613.01.T01:CDS	40.0%
	TATCCCGCCACTATATATCA+AGG	+	Chr4:7462722-7462741	MsG0480018613.01.T01:CDS	40.0%
	TCAGAACATGGCATCAATGT+AGG	+	Chr4:7463057-7463076	MsG0480018613.01.T01:CDS	40.0%
	TCGCGCATGTAATTCCATTT+GGG	-	Chr4:7462030-7462049	None:intergenic	40.0%
	TTCGCGCATGTAATTCCATT+TGG	-	Chr4:7462031-7462050	None:intergenic	40.0%
	TTGGAGCTTCTCATTAGACT+TGG	+	Chr4:7462243-7462262	MsG0480018613.01.T01:CDS	40.0%
	TTTGCTTCTCGAAGTTTGTC+TGG	-	Chr4:7461925-7461944	None:intergenic	40.0%
!	TCGAAGTTTGTCTGGAATGT+TGG	-	Chr4:7461917-7461936	None:intergenic	40.0%
!	TGATTTGTGCTAGCTATGGT+GGG	+	Chr4:7462145-7462164	MsG0480018613.01.T01:CDS	40.0%
!!	TATAGGAAGGTATTTCCCGA+TGG	+	Chr4:7462402-7462421	MsG0480018613.01.T01:CDS	40.0%
	ACCTCTATGTAAGGGTCCTA+TGG	-	Chr4:7461977-7461996	None:intergenic	45.0%
	CTCCCGAGCTATTCATCAAA+GGG	-	Chr4:7462485-7462504	None:intergenic	45.0%
	CTTGTGGCACCTCTATGTAA+GGG	-	Chr4:7461985-7462004	None:intergenic	45.0%
	GCGACCATATACCTAATGTG+TGG	+	Chr4:7463135-7463154	MsG0480018613.01.T01:CDS	45.0%
	GCTACAAATCTTCGTGCTTC+TGG	+	Chr4:7462597-7462616	MsG0480018613.01.T01:CDS	45.0%
	GGGAATGAAAGTCACTAAGG+TGG	+	Chr4:7463019-7463038	MsG0480018613.01.T01:CDS	45.0%
	TCCATAGGACCCTTACATAG+AGG	+	Chr4:7461973-7461992	MsG0480018613.01.T01:CDS	45.0%
	TCTTGTGGCACCTCTATGTA+AGG	-	Chr4:7461986-7462005	None:intergenic	45.0%
	TTTGATGCACTTGTCCACAG+TGG	+	Chr4:7462521-7462540	MsG0480018613.01.T01:CDS	45.0%
!	GTGATTTGTGCTAGCTATGG+TGG	+	Chr4:7462144-7462163	MsG0480018613.01.T01:CDS	45.0%
	CCTCCCGAGCTATTCATCAA+AGG	-	Chr4:7462486-7462505	None:intergenic	50.0%
	CCTTTGATGAATAGCTCGGG+AGG	+	Chr4:7462483-7462502	MsG0480018613.01.T01:CDS	50.0%
	CGCGAATTTCTTGATCGGCA+AGG	+	Chr4:7462045-7462064	MsG0480018613.01.T01:CDS	50.0%
!	TCTGCATGATGGTGAGTACC+AGG	-	Chr4:7463193-7463212	None:intergenic	50.0%
	TTTGGCAGCTGCTATGCTCC+TGG	+	Chr4:7463172-7463191	MsG0480018613.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	7461868	7463238	7461868	ID=MsG0480018613.01;Name=MsG0480018613.01
Chr4	mRNA	7461868	7463238	7461868	ID=MsG0480018613.01.T01;Parent=MsG0480018613.01;Name=MsG0480018613.01.T01;_AED=0.02;_eAED=0.02;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|456
Chr4	exon	7461868	7463238	7461868	ID=MsG0480018613.01.T01:exon:2416;Parent=MsG0480018613.01.T01
Chr4	CDS	7461868	7463238	7461868	ID=MsG0480018613.01.T01:cds;Parent=MsG0480018613.01.T01

Gene Sequence

>MsG0480018613.01.T01

ATGTTGGGTTCACTCAATCACGGTGAAGTTCAAGCATGTAGCATTTCCAACATTCCAGACAAACTTCGAGAAGCAAACGAAGATGCTTATAAACCAAAAAATATCTCCATAGGACCCTTACATAGAGGTGCCACAAGACACCTTCAATTAATGGAAGAACCCAAATGGAATTACATGCGCGAATTTCTTGATCGGCAAGGACCAATACAAGAACAAAATAGAAGATCAGAGATAAGGTTAAGAGAATGTGGCTATGACATTCTCAAGTTAGATAAAGTGATTTGTGCTAGCTATGGTGGGAGCAACAACAACATCGTCGAAGAAAAAGAACCAGAAGAAATCGCTAAAATAATGATAATAGATGGTTGTTTTCTATTGGAGCTTCTCATTAGACTTGGCGATTACATGGATAACCAAACAACAACATCTTTCAACAACGACTCGATCCTTAAAAGAGAAGAAAAGATGTTGTCTGTTTTAAATGATATAGTAATGCTTGAGAATCAAATGCCCTTCCTTGTTCTCAAGAAGTTATATAGGAAGGTATTTCCCGATGGTAGTGAAATCAAAGACGATTATCGTGTGGCTAATATAGTTCGTAAAGCCTTTGGTTACCCTTTGATGAATAGCTCGGGAGGTGCTCATATACTTCATTTGATGCACTTGTCCACAGTGGAACAAAATCAACAATATGAAGGGAAAAAAGCGAAGCTAGAATTAATGCGTTGTGCTACAAATCTTCGTGCTTCTGGGGTAACAATTCGCGCTAAATTAAATAACACAAATCAAAATCAGCACAAATTGGTGGATATGTTTGATTTTGATATAAGTTTTACTGATTCTGGAGAGTTGGATATCCCGCCACTATATATCAAGGAAACAACTGAAGTGAAGTGGAGGAATTTGATTGCTTGGGAGCAAAGCAAAATTTGGATTAGATGCAAATACACTTCTTATGCACTTTTCTTCAATGGTTTGATATGCTGTGAGCATGACATTGAATTACTTCAAGAAAAAGGTGTCATTGTGAATGAGTTGAACAATAGTAACGAAGATTTGTTGGCAGTATTTCGCACGATTTCAAATGGAGCTGAACATATGGATTTGAGTTTTACTGAAATTTGTGCAAAGATGAATGTGTATGACTACAAGGGAATGAAAGTCACTAAGGTGGTGCAAAAATTACCTATCAGAACATGGCATCAATGTAGGCGTGTTTTTGAGATCCTTATGTACTATGGTCGAAACTGGTATAATATTTTGATACGCGACCATATACCTAATGTGTGGAAATTCATAGGAATTTTGGCAGCTGCTATGCTCCTGGTACTCACCATCATGCAGACATATTACTCATCCCGCAGTGACTAA

Protein sequence

>MsG0480018613.01.T01

MLGSLNHGEVQACSISNIPDKLREANEDAYKPKNISIGPLHRGATRHLQLMEEPKWNYMREFLDRQGPIQEQNRRSEIRLRECGYDILKLDKVICASYGGSNNNIVEEKEPEEIAKIMIIDGCFLLELLIRLGDYMDNQTTTSFNNDSILKREEKMLSVLNDIVMLENQMPFLVLKKLYRKVFPDGSEIKDDYRVANIVRKAFGYPLMNSSGGAHILHLMHLSTVEQNQQYEGKKAKLELMRCATNLRASGVTIRAKLNNTNQNQHKLVDMFDFDISFTDSGELDIPPLYIKETTEVKWRNLIAWEQSKIWIRCKYTSYALFFNGLICCEHDIELLQEKGVIVNELNNSNEDLLAVFRTISNGAEHMDLSFTEICAKMNVYDYKGMKVTKVVQKLPIRTWHQCRRVFEILMYYGRNWYNILIRDHIPNVWKFIGILAAAMLLVLTIMQTYYSSRSD*