AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019066.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019066.01.T01 MTR_3g047490 43.092 304 157 5 3 297 27 323 1.67e-78 245
MsG0480019066.01.T01 MTR_5g049460 34.753 446 218 9 3 382 27 465 1.85e-78 250
MsG0480019066.01.T01 MTR_6g039060 37.853 354 204 6 3 343 27 377 1.43e-74 241
MsG0480019066.01.T01 MTR_0010s0130 42.446 278 148 5 3 273 27 299 8.73e-65 218
MsG0480019066.01.T01 MTR_0752s0020 39.630 270 133 7 8 271 32 277 6.56e-57 196
MsG0480019066.01.T01 MTR_4g053915 37.013 308 171 6 8 300 36 335 3.56e-56 193
MsG0480019066.01.T01 MTR_6g052660 34.985 323 188 6 5 313 6 320 4.49e-56 194
MsG0480019066.01.T01 MTR_4g119430 36.482 307 179 7 5 300 33 334 7.65e-55 192
MsG0480019066.01.T01 MTR_0195s0040 34.483 319 195 7 5 313 34 348 3.54e-54 189
MsG0480019066.01.T01 MTR_0547s0010 35.692 325 183 7 84 388 1 319 1.47e-53 184
MsG0480019066.01.T01 MTR_0387s0030 32.124 386 179 7 1 353 25 360 2.31e-53 188
MsG0480019066.01.T01 MTR_4g046907 35.385 325 184 7 84 388 1 319 2.52e-53 184
MsG0480019066.01.T01 MTR_7g009270 36.156 307 180 7 5 300 34 335 2.82e-53 190
MsG0480019066.01.T01 MTR_6g049080 33.973 365 194 7 1 360 25 347 5.80e-53 181
MsG0480019066.01.T01 MTR_7g068680 36.655 281 162 5 5 275 34 308 1.19e-52 181
MsG0480019066.01.T01 MTR_1465s0010 35.048 311 156 7 5 304 22 297 1.51e-52 181
MsG0480019066.01.T01 MTR_3g048350 34.688 320 193 7 5 313 6 320 1.61e-52 187
MsG0480019066.01.T01 MTR_0454s0020 35.948 306 179 7 7 300 147 447 1.96e-51 181
MsG0480019066.01.T01 MTR_0132s0050 31.807 415 200 8 3 379 27 396 3.26e-51 179
MsG0480019066.01.T01 MTR_6g047410 34.056 323 191 9 5 313 33 347 1.57e-50 182
MsG0480019066.01.T01 MTR_1g053665 35.061 328 181 8 51 366 24 331 8.66e-50 172
MsG0480019066.01.T01 MTR_5g084777 36.424 302 170 8 5 294 33 324 3.90e-49 178
MsG0480019066.01.T01 MTR_5g459570 35.762 302 172 8 5 294 33 324 2.31e-48 174
MsG0480019066.01.T01 MTR_8g012072 35.762 302 172 8 5 294 33 324 9.45e-48 174
MsG0480019066.01.T01 MTR_8g087757 35.762 302 172 8 5 294 33 324 1.00e-47 174
MsG0480019066.01.T01 MTR_6g471790 35.762 302 172 8 5 294 33 324 1.00e-47 174
MsG0480019066.01.T01 MTR_0133s0060 35.762 302 172 8 5 294 33 324 1.10e-47 174
MsG0480019066.01.T01 MTR_3g436570 35.430 302 173 8 5 294 33 324 3.46e-47 173
MsG0480019066.01.T01 MTR_7g099763 39.184 245 140 5 5 241 33 276 5.16e-47 163
MsG0480019066.01.T01 MTR_0015s0160 34.628 309 180 7 5 299 34 334 5.90e-47 169
MsG0480019066.01.T01 MTR_7g024373 35.430 302 173 8 5 294 33 324 1.11e-46 171
MsG0480019066.01.T01 MTR_5g056945 33.574 277 168 5 5 271 32 302 7.79e-46 160
MsG0480019066.01.T01 MTR_6g033905 34.228 298 147 6 5 300 34 284 6.69e-45 163
MsG0480019066.01.T01 MTR_0322s0040 32.143 308 163 10 5 304 34 303 2.79e-38 142
MsG0480019066.01.T01 MTR_3g450160 30.769 273 174 5 43 304 1 269 4.34e-37 142
MsG0480019066.01.T01 MTR_8g468090 31.250 272 156 7 39 300 2 252 1.75e-36 139
MsG0480019066.01.T01 MTR_0324s0040 28.369 282 181 5 77 341 10 287 4.01e-30 119
MsG0480019066.01.T01 MTR_7g038780 25.758 330 213 9 5 327 34 338 2.96e-29 118
MsG0480019066.01.T01 MTR_5g056860 28.438 320 152 9 5 313 34 287 3.50e-29 120
MsG0480019066.01.T01 MTR_7g027027 40.719 167 91 4 5 164 33 198 4.46e-29 112
MsG0480019066.01.T01 MTR_7g045830 28.657 335 196 6 1 329 1 298 4.70e-27 111
MsG0480019066.01.T01 MTR_1g099290 31.022 274 130 10 33 300 320 540 4.05e-26 110
MsG0480019066.01.T01 MTR_6g464050 25.280 447 177 16 5 386 34 388 3.00e-25 108
MsG0480019066.01.T01 MTR_3g047110 41.176 119 64 3 175 292 30 143 5.64e-25 102
MsG0480019066.01.T01 MTR_0450s0010 33.537 164 102 3 154 313 1 161 3.91e-24 102
MsG0480019066.01.T01 MTR_0002s0140 44.186 129 68 1 3 127 27 155 3.98e-24 100
MsG0480019066.01.T01 MTR_5g049140 32.927 164 103 3 154 313 1 161 1.84e-22 99.8
MsG0480019066.01.T01 MTR_1638s0010 42.308 104 57 2 206 308 1 102 1.09e-19 90.1
MsG0480019066.01.T01 MTR_1g052035 27.647 170 120 2 146 313 99 267 1.24e-19 89.0
MsG0480019066.01.T01 MTR_3g035410 35.443 158 90 5 206 353 1 156 7.37e-16 78.2
MsG0480019066.01.T01 MTR_3g436840 52.174 69 33 0 1 69 27 95 8.19e-14 73.2
MsG0480019066.01.T01 MTR_1g423950 44.615 65 35 1 5 69 33 96 2.58e-12 63.9
MsG0480019066.01.T01 MTR_3g031890 43.836 73 38 2 5 75 34 105 1.17e-11 62.8
MsG0480019066.01.T01 MTR_3g040210 44.286 70 39 0 1 70 16 85 5.09e-11 64.3
MsG0480019066.01.T01 MTR_3g040210 38.235 102 62 1 212 313 119 219 5.56e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATAGTGCTTTCATTTA+TGG 0.020977 4:+14107079 None:intergenic
GGACTTTCCTCCCATCTTTA+AGG 0.153003 4:-14106829 MsG0480019066.01.T01:CDS
TGACTCTACTTGAACTATTA+AGG 0.226667 4:+14107685 None:intergenic
CTTCCTTCCTGACTATTTCT+TGG 0.228529 4:+14107333 None:intergenic
AGGTTACTACAACACTCTTT+TGG 0.268967 4:-14107297 MsG0480019066.01.T01:CDS
GAGTGCTTGCATCTTCTTCC+AGG 0.269107 4:+14106763 None:intergenic
GAGTATTTCAAGATGCTAAA+TGG 0.300004 4:-14107590 MsG0480019066.01.T01:CDS
TGAACTTGGTCAAGGACTTT+TGG 0.305016 4:-14107556 MsG0480019066.01.T01:CDS
AATTTACTTCATGGCTATTC+TGG 0.318612 4:-14107147 MsG0480019066.01.T01:CDS
CCCAAGCTGAAGAAGGAAAA+AGG 0.319810 4:-14106561 MsG0480019066.01.T01:CDS
CTGCTGAAACTGAGATAATC+AGG 0.323360 4:-14106851 MsG0480019066.01.T01:CDS
ACGTCCTCAGTGATGGTTAT+AGG 0.334141 4:+14107395 None:intergenic
GAAGCTAGCAATTTACTTCA+TGG 0.334384 4:-14107156 MsG0480019066.01.T01:CDS
CATTTGATAGCTTAGAAATA+AGG 0.347561 4:-14107436 MsG0480019066.01.T01:CDS
AGATGATCCATTACATATCT+TGG 0.352507 4:+14107110 None:intergenic
TGCTAGCTTCTGTTGATTGT+TGG 0.363863 4:+14107169 None:intergenic
GCTAGCTTCTGTTGATTGTT+GGG 0.380746 4:+14107170 None:intergenic
AGAGTAACTTTCCTTAAAGA+TGG 0.387312 4:+14106818 None:intergenic
TTTACCTTCTTTACTTTAGC+AGG 0.397488 4:+14106726 None:intergenic
GCTTCTGTTGATTGTTGGGT+TGG 0.399652 4:+14107174 None:intergenic
ACGTTATAGCTAAAGCTTGT+AGG 0.401395 4:-14107376 MsG0480019066.01.T01:CDS
ATCAGAAGCAATTACTGATA+AGG 0.413983 4:-14106691 MsG0480019066.01.T01:CDS
GGGTGCTGGAGTTCTTAAAA+AGG 0.417608 4:-14107001 MsG0480019066.01.T01:CDS
TCAGAAGCAATTACTGATAA+GGG 0.431173 4:-14106690 MsG0480019066.01.T01:CDS
AGATGCAAAGCCTTCTGAAA+TGG 0.433259 4:-14107264 MsG0480019066.01.T01:CDS
GAAGATTCCAAGAAATAGTC+AGG 0.435830 4:-14107340 MsG0480019066.01.T01:CDS
AGTATTTCAAGATGCTAAAT+GGG 0.444412 4:-14107589 MsG0480019066.01.T01:CDS
GATGATCCATTACATATCTT+GGG 0.455203 4:+14107111 None:intergenic
ATGTAATGGATCATCTCTGC+TGG 0.475466 4:-14107103 MsG0480019066.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 4:-14107423 MsG0480019066.01.T01:CDS
AAACTTCCCAAGATATGTAA+TGG 0.477975 4:-14107117 MsG0480019066.01.T01:CDS
GATTGCTTCTTTCAAAGAGC+AGG 0.488635 4:-14107206 MsG0480019066.01.T01:CDS
TCTAAGCTATCAAATGATGT+AGG 0.490834 4:+14107443 None:intergenic
CTGAAATGGAGATTCACAAC+AGG 0.491040 4:-14107250 MsG0480019066.01.T01:CDS
TGGGTCAAAGAAAGGGAAAA+TGG 0.497362 4:-14107480 MsG0480019066.01.T01:CDS
ATCAGTAGCTGAGTATGTCC+TGG 0.498397 4:-14106781 MsG0480019066.01.T01:CDS
AGAAGACTATGGATATTCCA+TGG 0.500726 4:-14107712 None:intergenic
AAACAAGCTGGGTCAAAGAA+AGG 0.502080 4:-14107488 MsG0480019066.01.T01:CDS
GAAGGATGTCAAAAGAAAGA+GGG 0.506369 4:-14106658 MsG0480019066.01.T01:CDS
TGTTCCTGCTAAAGTAAAGA+AGG 0.506920 4:-14106730 MsG0480019066.01.T01:CDS
CTGAAAGGATTATCAGTAGC+AGG 0.508302 4:-14106938 MsG0480019066.01.T01:CDS
AACAAGCTGGGTCAAAGAAA+GGG 0.513083 4:-14107487 MsG0480019066.01.T01:CDS
TTTGGATGAAATAGAAAAGG+AGG 0.517446 4:-14106592 MsG0480019066.01.T01:CDS
TTGTGAATCTCCATTTCAGA+AGG 0.526263 4:+14107254 None:intergenic
AGCTGAGCCCAAGCTGAAGA+AGG 0.530989 4:-14106568 MsG0480019066.01.T01:CDS
TGGGCCAACATATGTGAACT+TGG 0.531084 4:-14107570 MsG0480019066.01.T01:CDS
GGAAGAAAACAAGTACCCTA+TGG 0.532902 4:-14107056 MsG0480019066.01.T01:CDS
TTGACCAAGTTCACATATGT+TGG 0.534216 4:+14107566 None:intergenic
AGCTTTGGATGAAATAGAAA+AGG 0.537117 4:-14106595 MsG0480019066.01.T01:CDS
GAGTAACTTTCCTTAAAGAT+GGG 0.541487 4:+14106819 None:intergenic
AAAGTCGTAAGCAAACAAGC+TGG 0.548529 4:-14107500 MsG0480019066.01.T01:CDS
TGTTGTAGTAACCTTGTAGC+AGG 0.549844 4:+14107306 None:intergenic
TGATAAGGGCAAGCAAAAGA+AGG 0.550430 4:-14106676 MsG0480019066.01.T01:CDS
AGCTATAACGTCCTCAGTGA+TGG 0.550655 4:+14107388 None:intergenic
TTCAGACAGCAATCTTCCAT+AGG 0.552612 4:+14107040 None:intergenic
AGAAGGATGTCAAAAGAAAG+AGG 0.553818 4:-14106659 MsG0480019066.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG 0.558761 4:-14106887 MsG0480019066.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 4:-14107422 MsG0480019066.01.T01:CDS
ATTCCAAGAAATAGTCAGGA+AGG 0.562379 4:-14107336 MsG0480019066.01.T01:CDS
TGCTTCTTTCAAAGAGCAGG+AGG 0.563512 4:-14107203 MsG0480019066.01.T01:CDS
CAAGAAGTATGAAGTAAACA+TGG 0.567275 4:-14107642 MsG0480019066.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG 0.567877 4:-14107474 MsG0480019066.01.T01:CDS
AAGGAAGATGTCCTGCTACA+AGG 0.568237 4:-14107317 MsG0480019066.01.T01:CDS
TGAACTATTAAGGATTCCCA+TGG 0.576043 4:+14107695 None:intergenic
TCGAAGTCTCTACTGCTGAA+AGG 0.582052 4:-14106953 MsG0480019066.01.T01:CDS
AAGGATGTCAAAAGAAAGAG+GGG 0.583601 4:-14106657 MsG0480019066.01.T01:CDS
ACTCAGCTACTGATTGAACT+AGG 0.585538 4:+14106790 None:intergenic
TCAGACAGCAATCTTCCATA+GGG 0.588685 4:+14107041 None:intergenic
GGAGATTCACAACAGGATGT+TGG 0.588861 4:-14107243 MsG0480019066.01.T01:CDS
GGAAGAAGATGCAAGCACTC+AGG 0.589097 4:-14106760 MsG0480019066.01.T01:CDS
AAGTCGTAAGCAAACAAGCT+GGG 0.591113 4:-14107499 MsG0480019066.01.T01:CDS
AATAGTTCAAGTAGAGTCAC+CGG 0.592431 4:-14107681 MsG0480019066.01.T01:CDS
TATAGCTAAAGCTTGTAGGA+TGG 0.593671 4:-14107372 MsG0480019066.01.T01:CDS
AGCTTGTAGGATGGATGCAG+AGG 0.595153 4:-14107363 MsG0480019066.01.T01:CDS
TAACTTTCCTTAAAGATGGG+AGG 0.601317 4:+14106822 None:intergenic
GAAGACTATGGATATTCCAT+GGG 0.608051 4:-14107711 None:intergenic
ATAAATGAAAGCACTATCAG+AGG 0.610449 4:-14107077 MsG0480019066.01.T01:CDS
AAGTATGAAGTAAACATGGA+AGG 0.610824 4:-14107638 MsG0480019066.01.T01:CDS
TGTAATGGATCATCTCTGCT+GGG 0.612052 4:-14107102 MsG0480019066.01.T01:CDS
AGTAATTGCTTCTGATGCAG+TGG 0.618981 4:+14106698 None:intergenic
TGCTGAAACTGAGATAATCA+GGG 0.625436 4:-14106850 MsG0480019066.01.T01:CDS
TTGAGTGAAGCAAAATCCAC+CGG 0.625573 4:+14107662 None:intergenic
AACATATGTGAACTTGGTCA+AGG 0.631522 4:-14107564 MsG0480019066.01.T01:CDS
AGAAGATGCAAGCACTCAGG+AGG 0.632746 4:-14106757 MsG0480019066.01.T01:CDS
GCTTGTAGGATGGATGCAGA+GGG 0.632839 4:-14107362 MsG0480019066.01.T01:CDS
AGCTGAAACAGTTTATCACA+AGG 0.643490 4:-14106631 MsG0480019066.01.T01:CDS
AGGATGTCAAAAGAAAGAGG+GGG 0.684309 4:-14106656 MsG0480019066.01.T01:CDS
AGTTCAAGTAGAGTCACCGG+TGG 0.701435 4:-14107678 MsG0480019066.01.T01:CDS
CATTCCTATAACCATCACTG+AGG 0.778544 4:-14107399 MsG0480019066.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATTTCAAGATGCTAAAT+GGG - Chr4:14106666-14106685 MsG0480019066.01.T01:CDS 25.0%
!! CATTTGATAGCTTAGAAATA+AGG - Chr4:14106819-14106838 MsG0480019066.01.T01:CDS 25.0%
!! TGAAATCTTTTATCAAGGAA+GGG - Chr4:14107234-14107253 MsG0480019066.01.T01:CDS 25.0%
AAACTTCCCAAGATATGTAA+TGG - Chr4:14107138-14107157 MsG0480019066.01.T01:CDS 30.0%
AAGTATGAAGTAAACATGGA+AGG - Chr4:14106617-14106636 MsG0480019066.01.T01:CDS 30.0%
AATTTACTTCATGGCTATTC+TGG - Chr4:14107108-14107127 MsG0480019066.01.T01:CDS 30.0%
AGAGTAACTTTCCTTAAAGA+TGG + Chr4:14107440-14107459 None:intergenic 30.0%
AGATGATCCATTACATATCT+TGG + Chr4:14107148-14107167 None:intergenic 30.0%
AGTTTATCACAAGGAAAAAC+TGG - Chr4:14107633-14107652 MsG0480019066.01.T01:CDS 30.0%
ATCAGAAGCAATTACTGATA+AGG - Chr4:14107564-14107583 MsG0480019066.01.T01:CDS 30.0%
GAGTAACTTTCCTTAAAGAT+GGG + Chr4:14107439-14107458 None:intergenic 30.0%
GAGTATTTCAAGATGCTAAA+TGG - Chr4:14106665-14106684 MsG0480019066.01.T01:CDS 30.0%
GATGATCCATTACATATCTT+GGG + Chr4:14107147-14107166 None:intergenic 30.0%
TCAGAAGCAATTACTGATAA+GGG - Chr4:14107565-14107584 MsG0480019066.01.T01:CDS 30.0%
TCTAAGCTATCAAATGATGT+AGG + Chr4:14106815-14106834 None:intergenic 30.0%
TGACTCTACTTGAACTATTA+AGG + Chr4:14106573-14106592 None:intergenic 30.0%
TTTACCTTCTTTACTTTAGC+AGG + Chr4:14107532-14107551 None:intergenic 30.0%
TTTGGATGAAATAGAAAAGG+AGG - Chr4:14107663-14107682 MsG0480019066.01.T01:CDS 30.0%
! CAAGAAGTATGAAGTAAACA+TGG - Chr4:14106613-14106632 MsG0480019066.01.T01:CDS 30.0%
! CTGAAATCTTTTATCAAGGA+AGG - Chr4:14107233-14107252 MsG0480019066.01.T01:CDS 30.0%
! TCTGATAGTGCTTTCATTTA+TGG + Chr4:14107179-14107198 None:intergenic 30.0%
!! AGCTTTGGATGAAATAGAAA+AGG - Chr4:14107660-14107679 MsG0480019066.01.T01:CDS 30.0%
!! ATAAATGAAAGCACTATCAG+AGG - Chr4:14107178-14107197 MsG0480019066.01.T01:CDS 30.0%
!! CTAACCACTTTTCATCTTTA+GGG + Chr4:14107375-14107394 None:intergenic 30.0%
!! CTGTCTGAAATCTTTTATCA+AGG - Chr4:14107229-14107248 MsG0480019066.01.T01:CDS 30.0%
!! TAACCACTTTTCATCTTTAG+GGG + Chr4:14107374-14107393 None:intergenic 30.0%
!! TCTAACCACTTTTCATCTTT+AGG + Chr4:14107376-14107395 None:intergenic 30.0%
AAAGAAAGGGAAAATGGTCA+TGG - Chr4:14106781-14106800 MsG0480019066.01.T01:CDS 35.0%
AACATATGTGAACTTGGTCA+AGG - Chr4:14106691-14106710 MsG0480019066.01.T01:CDS 35.0%
AAGGATGTCAAAAGAAAGAG+GGG - Chr4:14107598-14107617 MsG0480019066.01.T01:CDS 35.0%
AATAGTTCAAGTAGAGTCAC+CGG - Chr4:14106574-14106593 MsG0480019066.01.T01:CDS 35.0%
ACGTTATAGCTAAAGCTTGT+AGG - Chr4:14106879-14106898 MsG0480019066.01.T01:CDS 35.0%
AGAAGGATGTCAAAAGAAAG+AGG - Chr4:14107596-14107615 MsG0480019066.01.T01:CDS 35.0%
AGCTGAAACAGTTTATCACA+AGG - Chr4:14107624-14107643 MsG0480019066.01.T01:CDS 35.0%
ATTCCAAGAAATAGTCAGGA+AGG - Chr4:14106919-14106938 MsG0480019066.01.T01:CDS 35.0%
GAAGATTCCAAGAAATAGTC+AGG - Chr4:14106915-14106934 MsG0480019066.01.T01:CDS 35.0%
GAAGCTAGCAATTTACTTCA+TGG - Chr4:14107099-14107118 MsG0480019066.01.T01:CDS 35.0%
GAAGGATGTCAAAAGAAAGA+GGG - Chr4:14107597-14107616 MsG0480019066.01.T01:CDS 35.0%
TAACTTTCCTTAAAGATGGG+AGG + Chr4:14107436-14107455 None:intergenic 35.0%
TATAGCTAAAGCTTGTAGGA+TGG - Chr4:14106883-14106902 MsG0480019066.01.T01:CDS 35.0%
TGAACTATTAAGGATTCCCA+TGG + Chr4:14106563-14106582 None:intergenic 35.0%
TGCTGAAACTGAGATAATCA+GGG - Chr4:14107405-14107424 MsG0480019066.01.T01:CDS 35.0%
TGGAGTTCTTAAAAAGGACA+AGG - Chr4:14107260-14107279 MsG0480019066.01.T01:CDS 35.0%
TGTTCCTGCTAAAGTAAAGA+AGG - Chr4:14107525-14107544 MsG0480019066.01.T01:CDS 35.0%
TTGACCAAGTTCACATATGT+TGG + Chr4:14106692-14106711 None:intergenic 35.0%
TTGTGAATCTCCATTTCAGA+AGG + Chr4:14107004-14107023 None:intergenic 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG - Chr4:14106832-14106851 MsG0480019066.01.T01:CDS 35.0%
! AGGTTACTACAACACTCTTT+TGG - Chr4:14106958-14106977 MsG0480019066.01.T01:CDS 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG - Chr4:14106833-14106852 MsG0480019066.01.T01:CDS 35.0%
! GGTTACTACAACACTCTTTT+GGG - Chr4:14106959-14106978 MsG0480019066.01.T01:CDS 35.0%
AAACAAGCTGGGTCAAAGAA+AGG - Chr4:14106767-14106786 MsG0480019066.01.T01:CDS 40.0%
AAAGTCGTAAGCAAACAAGC+TGG - Chr4:14106755-14106774 MsG0480019066.01.T01:CDS 40.0%
AACAAGCTGGGTCAAAGAAA+GGG - Chr4:14106768-14106787 MsG0480019066.01.T01:CDS 40.0%
AAGCCCCTAAAGATGAAAAG+TGG - Chr4:14107368-14107387 MsG0480019066.01.T01:CDS 40.0%
AAGTCGTAAGCAAACAAGCT+GGG - Chr4:14106756-14106775 MsG0480019066.01.T01:CDS 40.0%
AGGATGTCAAAAGAAAGAGG+GGG - Chr4:14107599-14107618 MsG0480019066.01.T01:CDS 40.0%
AGTAATTGCTTCTGATGCAG+TGG + Chr4:14107560-14107579 None:intergenic 40.0%
CATTCCTATAACCATCACTG+AGG - Chr4:14106856-14106875 MsG0480019066.01.T01:CDS 40.0%
CTGAAAGGATTATCAGTAGC+AGG - Chr4:14107317-14107336 MsG0480019066.01.T01:CDS 40.0%
CTGAAATGGAGATTCACAAC+AGG - Chr4:14107005-14107024 MsG0480019066.01.T01:CDS 40.0%
CTGCTGAAACTGAGATAATC+AGG - Chr4:14107404-14107423 MsG0480019066.01.T01:CDS 40.0%
GATTGCTTCTTTCAAAGAGC+AGG - Chr4:14107049-14107068 MsG0480019066.01.T01:CDS 40.0%
GGAAAAACTGGATGAAGCTT+TGG - Chr4:14107645-14107664 MsG0480019066.01.T01:CDS 40.0%
GGAAGAAAACAAGTACCCTA+TGG - Chr4:14107199-14107218 MsG0480019066.01.T01:CDS 40.0%
TCAGACAGCAATCTTCCATA+GGG + Chr4:14107217-14107236 None:intergenic 40.0%
TGATAAGGGCAAGCAAAAGA+AGG - Chr4:14107579-14107598 MsG0480019066.01.T01:CDS 40.0%
TGGGTCAAAGAAAGGGAAAA+TGG - Chr4:14106775-14106794 MsG0480019066.01.T01:CDS 40.0%
TGTTGTAGTAACCTTGTAGC+AGG + Chr4:14106952-14106971 None:intergenic 40.0%
TTCAGACAGCAATCTTCCAT+AGG + Chr4:14107218-14107237 None:intergenic 40.0%
TTGAGTGAAGCAAAATCCAC+CGG + Chr4:14106596-14106615 None:intergenic 40.0%
! ACTCAGCTACTGATTGAACT+AGG + Chr4:14107468-14107487 None:intergenic 40.0%
! AGATGCAAAGCCTTCTGAAA+TGG - Chr4:14106991-14107010 MsG0480019066.01.T01:CDS 40.0%
! CCTTTTTCCTTCTTCAGCTT+GGG + Chr4:14107697-14107716 None:intergenic 40.0%
! CTTCCTTCCTGACTATTTCT+TGG + Chr4:14106925-14106944 None:intergenic 40.0%
! GCTAGCTTCTGTTGATTGTT+GGG + Chr4:14107088-14107107 None:intergenic 40.0%
! TACTACAACACTCTTTTGGG+TGG - Chr4:14106962-14106981 MsG0480019066.01.T01:CDS 40.0%
! TGAACTTGGTCAAGGACTTT+TGG - Chr4:14106699-14106718 MsG0480019066.01.T01:CDS 40.0%
! TGCTAGCTTCTGTTGATTGT+TGG + Chr4:14107089-14107108 None:intergenic 40.0%
! TGTTTGCTTACGACTTTTGC+AGG + Chr4:14106752-14106771 None:intergenic 40.0%
!! ACTACAACACTCTTTTGGGT+GGG - Chr4:14106963-14106982 MsG0480019066.01.T01:CDS 40.0%
!! ATGTAATGGATCATCTCTGC+TGG - Chr4:14107152-14107171 MsG0480019066.01.T01:CDS 40.0%
!! TGTAATGGATCATCTCTGCT+GGG - Chr4:14107153-14107172 MsG0480019066.01.T01:CDS 40.0%
AAGGAAGATGTCCTGCTACA+AGG - Chr4:14106938-14106957 MsG0480019066.01.T01:CDS 45.0%
ACGTCCTCAGTGATGGTTAT+AGG + Chr4:14106863-14106882 None:intergenic 45.0%
AGCTATAACGTCCTCAGTGA+TGG + Chr4:14106870-14106889 None:intergenic 45.0%
ATCAGTAGCTGAGTATGTCC+TGG - Chr4:14107474-14107493 MsG0480019066.01.T01:CDS 45.0%
CCCAAGCTGAAGAAGGAAAA+AGG - Chr4:14107694-14107713 MsG0480019066.01.T01:CDS 45.0%
GGACTTTCCTCCCATCTTTA+AGG - Chr4:14107426-14107445 MsG0480019066.01.T01:CDS 45.0%
GGAGATTCACAACAGGATGT+TGG - Chr4:14107012-14107031 MsG0480019066.01.T01:CDS 45.0%
TCGAAGTCTCTACTGCTGAA+AGG - Chr4:14107302-14107321 MsG0480019066.01.T01:CDS 45.0%
TGCTTCTTTCAAAGAGCAGG+AGG - Chr4:14107052-14107071 MsG0480019066.01.T01:CDS 45.0%
TGGGCCAACATATGTGAACT+TGG - Chr4:14106685-14106704 MsG0480019066.01.T01:CDS 45.0%
! GCCTTTTTCCTTCTTCAGCT+TGG + Chr4:14107698-14107717 None:intergenic 45.0%
! GCTTCTGTTGATTGTTGGGT+TGG + Chr4:14107084-14107103 None:intergenic 45.0%
!! CTTTTATCAAGGAAGGGTGC+TGG - Chr4:14107240-14107259 MsG0480019066.01.T01:CDS 45.0%
!! GGGTGCTGGAGTTCTTAAAA+AGG - Chr4:14107254-14107273 MsG0480019066.01.T01:CDS 45.0%
AGAAGATGCAAGCACTCAGG+AGG - Chr4:14107498-14107517 MsG0480019066.01.T01:CDS 50.0%
AGCTTGTAGGATGGATGCAG+AGG - Chr4:14106892-14106911 MsG0480019066.01.T01:CDS 50.0%
AGTTCAAGTAGAGTCACCGG+TGG - Chr4:14106577-14106596 MsG0480019066.01.T01:CDS 50.0%
GAGTGCTTGCATCTTCTTCC+AGG + Chr4:14107495-14107514 None:intergenic 50.0%
GCTTGTAGGATGGATGCAGA+GGG - Chr4:14106893-14106912 MsG0480019066.01.T01:CDS 50.0%
GGAAGAAGATGCAAGCACTC+AGG - Chr4:14107495-14107514 MsG0480019066.01.T01:CDS 50.0%
AGCTGAGCCCAAGCTGAAGA+AGG - Chr4:14107687-14107706 MsG0480019066.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 14106551 14107726 14106551 ID=MsG0480019066.01;Name=MsG0480019066.01
Chr4 mRNA 14106551 14107726 14106551 ID=MsG0480019066.01.T01;Parent=MsG0480019066.01;Name=MsG0480019066.01.T01;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|391
Chr4 exon 14106551 14107726 14106551 ID=MsG0480019066.01.T01:exon:8709;Parent=MsG0480019066.01.T01
Chr4 CDS 14106551 14107726 14106551 ID=MsG0480019066.01.T01:cds;Parent=MsG0480019066.01.T01
Gene Sequence

>MsG0480019066.01.T01

ATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGATTGATAGAGACTCAGATGCTGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCTGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGGATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTACAAGGTTACTACAACACTCTTTTGGGTGGGAAGAAAGATGCAAAGCCTTCTGAAATGGAGATTCACAACAGGATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGATCTGACCAACCCAACAATCAACAGAAGCTAGCAATTTACTTCATGGCTATTCTGGAAAAGATAAACTTCCCAAGATATGTAATGGATCATCTCTGCTGGGCCATAAATGAAAGCACTATCAGAGGAAGAAAACAAGTACCCTATGGAAGATTGCTGTCTGAAATCTTTTATCAAGGAAGGGTGCTGGAGTTCTTAAAAAGGACAAGGAGTGCTTCTGATAGATGTTTCGAAGTCTCTACTGCTGAAAGGATTATCAGTAGCAGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTTACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTATGTCCTGGAAGAAGATGCAAGCACTCAGGAGGAAGCTGTTCCTGCTAAAGTAAAGAAGGTAAAGAGTGCCACTGCATCAGAAGCAATTACTGATAAGGGCAAGCAAAAGAAGGATGTCAAAAGAAAGAGGGGGAAAGCTGAAACAGTTTATCACAAGGAAAAACTGGATGAAGCTTTGGATGAAATAGAAAAGGAGGAAGCTGAGCCCAAGCTGAAGAAGGAAAAAGGCACCTATTGA
Protein sequence

>MsG0480019066.01.T01

MDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMLSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMDAEGRFQEIVRKEDVLLQGYYNTLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMAILEKINFPRYVMDHLCWAINESTIRGRKQVPYGRLLSEIFYQGRVLEFLKRTRSASDRCFEVSTAERIISSRSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESYSDFLVQSVAEYVLEEDASTQEEAVPAKVKKVKSATASEAITDKGKQKKDVKRKRGKAETVYHKEKLDEALDEIEKEEAEPKLKKEKGTY*