AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019546.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019546.01.T01 MTR_0294s0020 92.958 284 20 0 1 284 1 284 0.0 517
MsG0480019546.01.T01 MTR_4g033395 85.263 285 39 2 1 282 1 285 1.42e-179 504
MsG0480019546.01.T01 MTR_4g033325 89.547 287 27 2 1 284 1 287 9.25e-179 504
MsG0480019546.01.T01 MTR_4g033375 84.722 288 40 3 1 284 1 288 1.69e-175 494
MsG0480019546.01.T01 MTR_4g033315 86.014 286 38 1 1 284 1 286 3.64e-170 483
MsG0480019546.01.T01 MTR_4g033310 86.014 286 38 1 1 284 1 286 3.64e-170 483
MsG0480019546.01.T01 MTR_4g033330 86.014 286 38 1 1 284 1 286 1.24e-168 478
MsG0480019546.01.T01 MTR_4g033310 89.062 192 21 0 1 192 1 192 7.17e-113 335
MsG0480019546.01.T01 MTR_3g005010 64.835 273 88 3 13 284 12 277 1.16e-111 333
MsG0480019546.01.T01 MTR_4g033325 87.791 172 18 2 116 284 18 189 2.71e-105 314
MsG0480019546.01.T01 MTR_4g033385 84.615 169 24 1 116 282 16 184 2.48e-101 304
MsG0480019546.01.T01 MTR_4g033325 88.344 163 16 2 125 284 1 163 1.12e-100 301
MsG0480019546.01.T01 MTR_7g098200 46.124 258 124 3 17 261 15 270 4.73e-75 240
MsG0480019546.01.T01 MTR_7g098200 46.124 258 124 3 17 261 15 270 6.18e-75 240
MsG0480019546.01.T01 MTR_7g067010 44.828 261 135 3 8 261 1 259 1.75e-71 230
MsG0480019546.01.T01 MTR_7g098180 42.857 259 132 3 17 261 17 273 2.86e-71 230
MsG0480019546.01.T01 MTR_3g072300 43.130 262 140 2 17 270 10 270 2.18e-70 228
MsG0480019546.01.T01 MTR_3g069500 40.769 260 143 3 10 261 14 270 2.70e-70 227
MsG0480019546.01.T01 MTR_7g098150 42.802 257 132 3 17 260 19 273 2.89e-69 222
MsG0480019546.01.T01 MTR_7g098090 42.379 269 135 4 17 272 19 280 3.09e-69 225
MsG0480019546.01.T01 MTR_4g015080 42.123 292 150 5 10 284 13 302 3.17e-69 224
MsG0480019546.01.T01 MTR_4g019580 42.570 249 133 2 17 257 22 268 1.16e-68 223
MsG0480019546.01.T01 MTR_1g042310 43.462 260 133 3 17 264 12 269 1.93e-68 223
MsG0480019546.01.T01 MTR_1g041835 41.729 266 141 3 17 270 13 276 4.96e-68 221
MsG0480019546.01.T01 MTR_7g098160 42.007 269 136 4 17 272 19 280 7.76e-67 219
MsG0480019546.01.T01 MTR_3g462710 45.000 260 133 4 10 261 3 260 1.41e-66 217
MsG0480019546.01.T01 MTR_1g041815 42.188 256 134 3 17 260 13 266 1.86e-66 218
MsG0480019546.01.T01 MTR_7g098220 40.210 286 149 4 17 282 16 299 2.10e-66 218
MsG0480019546.01.T01 MTR_7g065080 42.339 248 133 3 17 256 17 262 2.10e-66 217
MsG0480019546.01.T01 MTR_7g098040 40.449 267 144 3 17 270 20 284 2.60e-66 218
MsG0480019546.01.T01 MTR_8g038880 51.724 232 102 2 30 261 19 240 3.58e-65 214
MsG0480019546.01.T01 MTR_3g014790 47.436 234 109 4 35 265 21 243 4.20e-65 213
MsG0480019546.01.T01 MTR_3g069420 39.394 264 146 3 3 259 11 267 6.35e-65 213
MsG0480019546.01.T01 MTR_1g041875 39.175 291 151 5 17 284 15 302 1.03e-64 213
MsG0480019546.01.T01 MTR_1g075440 40.146 274 143 4 17 271 14 285 6.73e-64 211
MsG0480019546.01.T01 MTR_3g069440 41.797 256 132 4 15 259 17 266 4.14e-63 209
MsG0480019546.01.T01 MTR_7g098230 41.772 237 123 3 38 261 33 267 4.84e-59 198
MsG0480019546.01.T01 MTR_1g042310 44.105 229 114 3 48 264 6 232 5.54e-59 197
MsG0480019546.01.T01 MTR_1g042310 43.612 227 114 3 50 264 1 225 2.16e-57 192
MsG0480019546.01.T01 MTR_3g112470 39.405 269 152 3 9 268 1 267 2.47e-57 193
MsG0480019546.01.T01 MTR_3g112460 39.033 269 153 3 9 268 1 267 3.93e-57 192
MsG0480019546.01.T01 MTR_1g041885 41.200 250 129 5 50 284 1 247 6.54e-55 186
MsG0480019546.01.T01 MTR_7g098220 39.608 255 132 4 48 282 3 255 1.04e-54 186
MsG0480019546.01.T01 MTR_7g010820 36.882 263 153 3 10 261 5 265 2.86e-54 185
MsG0480019546.01.T01 MTR_5g012270 37.288 295 161 5 12 284 10 302 5.91e-54 184
MsG0480019546.01.T01 MTR_7g005930 38.403 263 147 4 24 273 28 288 6.76e-54 184
MsG0480019546.01.T01 MTR_7g088820 38.686 274 150 4 1 264 1 266 2.01e-53 183
MsG0480019546.01.T01 MTR_5g012290 39.667 300 156 5 8 284 4 301 7.35e-53 181
MsG0480019546.01.T01 MTR_3g112450 39.615 260 144 4 20 268 12 269 3.38e-52 179
MsG0480019546.01.T01 MTR_5g055000 41.975 243 129 4 29 261 16 256 3.58e-52 179
MsG0480019546.01.T01 MTR_5g014150 36.567 268 157 3 3 259 16 281 1.15e-49 173
MsG0480019546.01.T01 MTR_4g101380 38.411 302 158 6 8 284 4 302 2.18e-49 172
MsG0480019546.01.T01 MTR_7g088825 38.224 259 148 4 16 264 7 263 3.17e-49 172
MsG0480019546.01.T01 MTR_4g098800 36.015 261 154 3 10 259 15 273 5.93e-47 166
MsG0480019546.01.T01 MTR_1g116930 36.905 252 147 4 27 268 19 268 1.27e-46 165
MsG0480019546.01.T01 MTR_4g098800 36.015 261 154 3 10 259 80 338 1.62e-46 165
MsG0480019546.01.T01 MTR_8g087810 35.926 270 158 4 15 271 5 272 1.19e-45 162
MsG0480019546.01.T01 MTR_5g038060 36.122 263 147 7 29 275 29 286 5.71e-45 160
MsG0480019546.01.T01 MTR_7g088790 37.218 266 155 4 9 264 7 270 9.33e-45 160
MsG0480019546.01.T01 MTR_7g013270 36.059 269 147 5 24 273 83 345 2.96e-44 159
MsG0480019546.01.T01 MTR_4g114340 41.053 285 148 5 16 284 9 289 3.54e-44 158
MsG0480019546.01.T01 MTR_8g087780 33.696 276 164 4 15 272 5 279 1.08e-43 157
MsG0480019546.01.T01 MTR_4g107610 34.657 277 160 4 27 284 27 301 1.25e-42 154
MsG0480019546.01.T01 MTR_7g064780 32.963 270 162 5 17 275 12 273 2.85e-42 153
MsG0480019546.01.T01 MTR_7g065080 40.678 177 95 2 88 256 1 175 1.44e-41 149
MsG0480019546.01.T01 MTR_7g088820 40.796 201 107 3 74 264 6 204 1.79e-41 150
MsG0480019546.01.T01 MTR_7g064800 33.969 262 152 5 27 275 22 275 1.99e-41 150
MsG0480019546.01.T01 MTR_4g107670 32.819 259 163 2 10 259 3 259 2.01e-41 150
MsG0480019546.01.T01 MTR_5g038380 34.749 259 157 3 11 259 8 264 2.32e-41 150
MsG0480019546.01.T01 MTR_2g017750 33.099 284 174 5 2 271 4 285 6.33e-41 149
MsG0480019546.01.T01 MTR_1g009200 32.990 291 168 8 4 281 10 286 2.54e-40 147
MsG0480019546.01.T01 MTR_3g100980 30.909 275 173 4 25 284 10 282 3.21e-40 147
MsG0480019546.01.T01 MTR_1g026740 33.460 263 160 4 30 282 16 273 1.60e-39 145
MsG0480019546.01.T01 MTR_7g006540 32.031 256 156 4 30 269 62 315 2.43e-39 145
MsG0480019546.01.T01 MTR_5g085850 39.764 254 137 3 17 256 16 267 1.00e-38 143
MsG0480019546.01.T01 MTR_1g026750 34.211 266 160 4 28 283 15 275 1.62e-38 142
MsG0480019546.01.T01 MTR_8g469470 31.418 261 161 4 25 271 26 282 1.01e-37 140
MsG0480019546.01.T01 MTR_5g038190 30.894 246 154 3 25 256 18 261 3.01e-37 139
MsG0480019546.01.T01 MTR_8g469480 34.921 252 145 5 35 272 42 288 3.23e-37 139
MsG0480019546.01.T01 MTR_4g107510 32.922 243 150 4 35 266 40 280 4.45e-37 139
MsG0480019546.01.T01 MTR_4g107580 32.653 245 152 4 35 268 28 270 1.43e-36 137
MsG0480019546.01.T01 MTR_4g107530 32.922 243 149 4 35 265 37 277 1.62e-36 137
MsG0480019546.01.T01 MTR_1g026770 33.080 263 161 4 27 279 11 268 3.23e-36 136
MsG0480019546.01.T01 MTR_8g469310 34.276 283 165 5 18 281 13 293 3.64e-36 136
MsG0480019546.01.T01 MTR_3g100980 32.510 243 147 4 25 252 10 250 7.31e-36 135
MsG0480019546.01.T01 MTR_8g103233 33.721 258 155 7 28 274 14 266 8.95e-36 135
MsG0480019546.01.T01 MTR_4g123537 33.600 250 157 3 18 260 28 275 2.82e-35 134
MsG0480019546.01.T01 MTR_2g005130 30.345 290 179 5 10 284 19 300 2.94e-35 134
MsG0480019546.01.T01 MTR_6g008690 35.238 210 128 2 36 237 12 221 7.34e-34 129
MsG0480019546.01.T01 MTR_2g093160 35.714 252 143 5 27 266 17 261 1.42e-33 128
MsG0480019546.01.T01 MTR_2g093640 37.751 249 136 6 30 266 20 261 2.75e-33 127
MsG0480019546.01.T01 MTR_4g011280 32.601 273 166 7 23 283 25 291 4.08e-33 127
MsG0480019546.01.T01 MTR_2g101590 33.910 289 169 11 10 283 4 285 4.33e-33 128
MsG0480019546.01.T01 MTR_7g098200 40.506 158 79 3 117 261 1 156 2.63e-32 124
MsG0480019546.01.T01 MTR_2g101610 31.111 270 167 7 10 264 4 269 3.39e-31 122
MsG0480019546.01.T01 MTR_2g101640 32.068 237 146 5 10 234 4 237 6.80e-31 121
MsG0480019546.01.T01 MTR_2g093180 36.111 252 142 5 27 266 17 261 1.02e-30 120
MsG0480019546.01.T01 MTR_1g057460 33.466 251 159 7 21 268 36 281 1.08e-30 120
MsG0480019546.01.T01 MTR_1g085090 29.150 247 166 2 29 268 17 261 7.17e-30 118
MsG0480019546.01.T01 MTR_7g111260 29.771 262 169 3 29 277 17 276 7.79e-30 118
MsG0480019546.01.T01 MTR_2g101650 28.947 266 171 6 17 268 10 271 1.48e-29 117
MsG0480019546.01.T01 MTR_7g051880 28.070 285 191 5 9 284 1 280 2.50e-29 116
MsG0480019546.01.T01 MTR_7g051830 28.421 285 190 5 9 284 1 280 4.99e-29 115
MsG0480019546.01.T01 MTR_4g024930 35.000 180 106 2 17 185 22 201 2.98e-28 114
MsG0480019546.01.T01 MTR_3g462710 47.287 129 66 2 133 261 25 151 7.37e-28 112
MsG0480019546.01.T01 MTR_0236s0050 31.925 213 139 4 59 268 1 210 1.03e-27 112
MsG0480019546.01.T01 MTR_7g052600 28.000 275 186 4 17 284 11 280 3.09e-27 110
MsG0480019546.01.T01 MTR_7g088820 38.065 155 84 3 120 264 4 156 5.79e-27 109
MsG0480019546.01.T01 MTR_1g057460 33.333 213 136 5 59 268 1 210 9.36e-27 109
MsG0480019546.01.T01 MTR_2g101560 29.740 269 172 6 10 264 4 269 1.66e-26 108
MsG0480019546.01.T01 MTR_7g098210 31.884 207 88 5 50 243 1 167 2.12e-21 93.6
MsG0480019546.01.T01 MTR_1g009170 33.333 138 85 4 147 281 9 142 1.27e-15 76.6
MsG0480019546.01.T01 MTR_7g064160 29.293 99 70 0 17 115 15 113 1.93e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019546.01.T01 AT1G22540 64.794 267 85 2 10 269 9 273 1.71e-109 328
MsG0480019546.01.T01 AT1G72125 54.167 288 122 4 1 282 1 284 5.86e-96 293
MsG0480019546.01.T01 AT1G22570 54.698 298 118 5 1 284 3 297 1.70e-93 287
MsG0480019546.01.T01 AT1G72120 55.273 275 113 5 1 269 1 271 2.03e-92 284
MsG0480019546.01.T01 AT1G22550 53.716 296 118 4 1 281 3 294 8.16e-90 278
MsG0480019546.01.T01 AT1G72140 51.064 282 121 3 16 284 19 296 5.12e-87 270
MsG0480019546.01.T01 AT1G22570 55.642 257 100 4 42 284 4 260 2.53e-82 257
MsG0480019546.01.T01 AT1G72130 54.198 262 114 3 29 284 23 284 1.59e-76 243
MsG0480019546.01.T01 AT2G02040 42.268 291 152 4 1 282 11 294 2.65e-70 228
MsG0480019546.01.T01 AT2G37900 42.857 266 142 3 10 268 17 279 8.19e-70 226
MsG0480019546.01.T01 AT3G54140 42.705 281 147 3 10 282 3 277 4.57e-69 224
MsG0480019546.01.T01 AT3G54140 42.705 281 147 3 10 282 3 277 4.57e-69 224
MsG0480019546.01.T01 AT3G54450 44.314 255 129 6 29 282 11 253 1.45e-68 222
MsG0480019546.01.T01 AT3G53960 38.983 295 160 5 3 283 2 290 2.00e-68 223
MsG0480019546.01.T01 AT5G46040 41.985 262 138 3 17 266 13 272 8.66e-68 221
MsG0480019546.01.T01 AT5G01180 42.336 274 142 5 17 281 11 277 4.79e-65 213
MsG0480019546.01.T01 AT5G01180 42.336 274 142 5 17 281 11 277 4.79e-65 213
MsG0480019546.01.T01 AT5G01180 42.336 274 142 5 17 281 11 277 4.79e-65 213
MsG0480019546.01.T01 AT1G62200 43.462 260 133 2 17 264 38 295 5.67e-65 214
MsG0480019546.01.T01 AT2G02020 40.138 289 160 3 3 282 14 298 6.96e-65 212
MsG0480019546.01.T01 AT1G62200 43.462 260 133 2 17 264 38 295 9.51e-65 214
MsG0480019546.01.T01 AT1G62200 43.462 260 133 2 17 264 52 309 1.21e-64 214
MsG0480019546.01.T01 AT2G02020 40.860 279 149 3 3 272 14 285 1.29e-62 206
MsG0480019546.01.T01 AT2G40460 43.411 258 135 4 11 259 4 259 4.80e-62 206
MsG0480019546.01.T01 AT5G46050 40.755 265 142 4 17 269 13 274 1.08e-61 205
MsG0480019546.01.T01 AT1G32450 36.782 261 152 3 10 259 16 274 1.16e-49 173
MsG0480019546.01.T01 AT2G37900 43.069 202 105 3 74 268 2 200 1.42e-49 171
MsG0480019546.01.T01 AT1G12110 37.459 307 157 7 3 284 7 303 3.27e-49 172
MsG0480019546.01.T01 AT1G69870 34.409 279 159 5 28 284 48 324 8.24e-47 166
MsG0480019546.01.T01 AT1G68570 42.672 232 121 3 40 261 32 261 1.10e-46 165
MsG0480019546.01.T01 AT2G26690 39.007 282 156 5 16 283 9 288 4.99e-46 163
MsG0480019546.01.T01 AT1G68570 43.111 225 116 3 45 259 7 229 6.73e-46 162
MsG0480019546.01.T01 AT4G21680 34.363 259 157 3 12 259 9 265 7.73e-46 162
MsG0480019546.01.T01 AT3G21670 40.244 246 131 3 21 252 19 262 4.81e-43 155
MsG0480019546.01.T01 AT5G19640 35.833 240 137 4 32 260 60 293 3.14e-42 153
MsG0480019546.01.T01 AT3G16180 33.455 275 167 5 21 281 12 284 1.03e-41 151
MsG0480019546.01.T01 AT5G28470 34.387 253 152 4 28 269 14 263 2.69e-41 150
MsG0480019546.01.T01 AT5G28470 34.387 253 152 4 28 269 14 263 2.90e-41 150
MsG0480019546.01.T01 AT5G14940 32.584 267 165 4 29 282 5 269 1.83e-40 147
MsG0480019546.01.T01 AT5G62730 34.553 246 155 2 12 257 37 276 3.98e-40 147
MsG0480019546.01.T01 AT1G18880 33.891 239 144 4 35 261 23 259 6.74e-40 146
MsG0480019546.01.T01 AT3G25280 35.156 256 153 5 21 272 11 257 1.28e-39 145
MsG0480019546.01.T01 AT5G13400 33.083 266 158 5 20 268 52 314 1.70e-39 145
MsG0480019546.01.T01 AT3G25260 35.361 263 159 5 12 270 2 257 2.71e-39 144
MsG0480019546.01.T01 AT1G52190 33.984 256 153 4 40 281 30 283 2.88e-39 145
MsG0480019546.01.T01 AT1G69850 33.852 257 159 3 9 256 3 257 1.12e-38 143
MsG0480019546.01.T01 AT1G27080 33.333 252 153 5 29 268 12 260 2.37e-38 142
MsG0480019546.01.T01 AT3G01350 33.074 257 153 4 33 272 9 263 3.84e-38 141
MsG0480019546.01.T01 AT2G26690 38.039 255 142 5 43 283 3 255 2.42e-37 139
MsG0480019546.01.T01 AT3G45690 35.714 266 148 7 30 281 17 273 4.83e-37 137
MsG0480019546.01.T01 AT1G69860 30.037 273 163 6 35 284 22 289 1.32e-36 137
MsG0480019546.01.T01 AT1G59740 32.567 261 161 4 20 268 30 287 1.68e-36 137
MsG0480019546.01.T01 AT1G27040 33.080 263 162 3 6 256 2 262 2.26e-36 136
MsG0480019546.01.T01 AT1G27040 33.730 252 153 3 17 256 9 258 6.77e-36 135
MsG0480019546.01.T01 AT5G62680 32.489 237 146 4 35 259 47 281 7.91e-36 135
MsG0480019546.01.T01 AT1G72130 48.193 166 80 3 125 284 1 166 1.85e-35 132
MsG0480019546.01.T01 AT1G72130 48.193 166 80 3 125 284 1 166 1.85e-35 132
MsG0480019546.01.T01 AT3G47960 34.043 235 143 4 35 259 65 297 4.15e-35 133
MsG0480019546.01.T01 AT5G62730 34.842 221 138 2 37 257 3 217 5.64e-35 132
MsG0480019546.01.T01 AT2G26690 37.295 244 137 5 54 283 2 243 1.11e-32 126
MsG0480019546.01.T01 AT3G45680 33.846 260 150 6 24 272 15 263 3.22e-32 125
MsG0480019546.01.T01 AT1G33440 33.955 268 151 5 7 257 14 272 3.27e-31 122
MsG0480019546.01.T01 AT1G27040 34.513 226 134 3 43 256 7 230 8.77e-31 120
MsG0480019546.01.T01 AT1G27080 33.333 219 131 5 62 268 3 218 1.44e-30 120
MsG0480019546.01.T01 AT3G45700 32.700 263 157 6 30 281 15 268 3.24e-30 119
MsG0480019546.01.T01 AT3G45710 32.319 263 158 6 31 280 21 276 2.39e-29 117
MsG0480019546.01.T01 AT3G45660 30.252 238 148 4 58 284 48 278 9.89e-29 115
MsG0480019546.01.T01 AT3G45660 30.252 238 148 4 58 284 48 278 9.89e-29 115
MsG0480019546.01.T01 AT3G45660 30.252 238 148 4 58 284 69 299 1.24e-28 115
MsG0480019546.01.T01 AT5G46050 39.264 163 84 4 119 269 3 162 3.73e-28 112
MsG0480019546.01.T01 AT5G11570 29.268 246 162 4 40 275 22 265 4.65e-28 112
MsG0480019546.01.T01 AT3G45720 32.787 244 144 6 40 272 28 262 4.84e-28 113
MsG0480019546.01.T01 AT3G45650 30.627 271 166 7 27 283 18 280 5.91e-28 113
MsG0480019546.01.T01 AT3G45650 30.627 271 166 7 27 283 18 280 7.20e-28 112
MsG0480019546.01.T01 AT2G38100 26.368 201 133 6 59 256 2 190 8.71e-11 62.4
MsG0480019546.01.T01 AT2G38100 26.368 201 133 6 59 256 18 206 8.85e-11 62.4
MsG0480019546.01.T01 AT2G38100 26.368 201 133 6 59 256 24 212 9.67e-11 62.4

Find 55 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGCTGATTCCTTTCT+TGG 0.107967 4:+21956311 MsG0480019546.01.T01:CDS
CTGCTGAAAATGTGAATATT+TGG 0.175954 4:+21956252 MsG0480019546.01.T01:CDS
AAACCTTGTGTTCAAGCTTT+TGG 0.192944 4:+21960237 MsG0480019546.01.T01:CDS
GATAACTATAGTTGGATTCT+TGG 0.220654 4:+21960384 MsG0480019546.01.T01:CDS
GCAGAGAGGATATCATATTT+TGG 0.269709 4:+21956170 MsG0480019546.01.T01:CDS
TATAGTTGGATTCTTGGATT+TGG 0.272236 4:+21960390 MsG0480019546.01.T01:CDS
GACATATAGGTTTAACATTA+AGG 0.274752 4:+21960467 MsG0480019546.01.T01:CDS
GCTTCTCTACTTCCTCTCTT+TGG 0.279847 4:+21956284 MsG0480019546.01.T01:CDS
TGCTTCCCTTATCTATATAT+TGG 0.283574 4:+21956355 MsG0480019546.01.T01:CDS
CTAGAAGCTCATTCTTTAAC+TGG 0.314877 4:+21960301 MsG0480019546.01.T01:CDS
AACTTGATATCATATCTAAC+AGG 0.320761 4:+21956203 MsG0480019546.01.T01:CDS
GCTCAATTAGCTATTGTTGA+TGG 0.341902 4:+21955454 MsG0480019546.01.T01:CDS
TTCTATATCCGTTGTTGATA+AGG 0.351701 4:-21960559 None:intergenic
TTAGGTCCAAATCTGGTTAC+TGG 0.355892 4:+21955506 MsG0480019546.01.T01:CDS
TTTGCAGTGCTCTGGTTTAG+TGG 0.359785 4:-21956227 None:intergenic
TCGTTGCAGCTGTAAGAAAT+TGG 0.371085 4:+21960529 MsG0480019546.01.T01:CDS
TGATCTCCAGTAACCAGATT+TGG 0.395595 4:-21955512 None:intergenic
TGCTGAAAATGTGAATATTT+GGG 0.419491 4:+21956253 MsG0480019546.01.T01:CDS
AGATCAGCTTGGTTTATCAT+AGG 0.426721 4:+21955529 MsG0480019546.01.T01:CDS
ACCAACCAATATATAGATAA+GGG 0.436128 4:-21956360 None:intergenic
TGCTTGGAACAAGGACATAT+AGG 0.436907 4:+21960454 MsG0480019546.01.T01:CDS
ATATTCAAGATAACTATAGT+TGG 0.443049 4:+21960376 MsG0480019546.01.T01:CDS
AACCAACCAATATATAGATA+AGG 0.463121 4:-21956361 None:intergenic
AGCTTCTAACAACACTTCGT+TGG 0.473548 4:-21955434 None:intergenic
CCTGCCGTTAGGTCCAAATC+TGG 0.487726 4:+21955499 MsG0480019546.01.T01:CDS
CTGGTTACTGGAGATCAGCT+TGG 0.496420 4:+21955518 MsG0480019546.01.T01:CDS
TCACTCTATCTAGTTGCCAT+TGG 0.515187 4:+21960201 MsG0480019546.01.T01:CDS
TACTATGGTTGCAGGTGCCA+CGG 0.515339 4:+21960332 MsG0480019546.01.T01:CDS
CTTCTAGCTCTATGCTCCTC+GGG 0.519106 4:-21960285 None:intergenic
TAATATAATTTACAGGGACT+AGG 0.523704 4:+21960102 MsG0480019546.01.T01:intron
GCTTCTAGCTCTATGCTCCT+CGG 0.528976 4:-21960286 None:intergenic
ACATAGGACAACCTGCCGTT+AGG 0.531268 4:+21955488 MsG0480019546.01.T01:CDS
GAAAATGTGAATATTTGGGC+TGG 0.534692 4:+21956257 MsG0480019546.01.T01:CDS
ACACGGCCGATTCTAAGAAA+AGG 0.535424 4:-21960504 None:intergenic
TGTGCGGTAGCGTCCAAGAA+AGG 0.543506 4:-21956324 None:intergenic
TTACAGCTGCAACGAATACA+CGG 0.559250 4:-21960521 None:intergenic
GCCCCAAAAGCTTGAACACA+AGG 0.560276 4:-21960240 None:intergenic
TTTATGTCCACCTTGTCCAA+TGG 0.576173 4:-21960217 None:intergenic
GTAGAACAAGATGTGAGTGA+AGG 0.576984 4:-21960150 None:intergenic
GTTATGTTTAGGTGTGGAAG+TGG 0.579550 4:+21956148 MsG0480019546.01.T01:intron
CCAGATTTGGACCTAACGGC+AGG 0.579651 4:-21955499 None:intergenic
TATCTAGTTGCCATTGGACA+AGG 0.587068 4:+21960207 MsG0480019546.01.T01:CDS
GAAGCTCATTCTTTAACTGG+TGG 0.604266 4:+21960304 MsG0480019546.01.T01:CDS
TCTTGAATATAAGTCAAGAT+CGG 0.606815 4:-21960363 None:intergenic
GCAATGAAAGCACCAAAGAG+AGG 0.608500 4:-21956296 None:intergenic
TAGGTGTGGAAGTGGCAGAG+AGG 0.610679 4:+21956156 MsG0480019546.01.T01:intron
ACAACGGATATAGAAGAGGA+TGG 0.619083 4:+21960567 MsG0480019546.01.T01:CDS
GATGGAGTCGTTGACTACAT+AGG 0.625460 4:+21955472 MsG0480019546.01.T01:CDS
ATCAACAACGGATATAGAAG+AGG 0.627482 4:+21960563 MsG0480019546.01.T01:CDS
GTAACCAGATTTGGACCTAA+CGG 0.634400 4:-21955503 None:intergenic
CAAGATCGGAAGTGTTGCCG+TGG 0.640514 4:-21960349 None:intergenic
CTAGTTGCCATTGGACAAGG+TGG 0.650474 4:+21960210 MsG0480019546.01.T01:CDS
GGGAAGCAAGTATGATTGTG+CGG 0.663906 4:-21956340 None:intergenic
GCGAAACACCTTATCAACAA+CGG 0.664604 4:+21960551 MsG0480019546.01.T01:CDS
ACTTGATATCATATCTAACA+GGG 0.676492 4:+21956204 MsG0480019546.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAGCAAAT+AGG + Chr4:21960030-21960049 MsG0480019546.01.T01:intron 10.0%
!! AAAAAAAAAAAAAGCAAATA+GGG + Chr4:21960031-21960050 MsG0480019546.01.T01:intron 10.0%
!! AAAAGAAAATGTAAAAAAAA+AGG - Chr4:21956942-21956961 None:intergenic 10.0%
!! AAAGAAAATGTAAAAAAAAA+GGG - Chr4:21956941-21956960 None:intergenic 10.0%
!! AATGTTATTAAAATTAAGTA+AGG - Chr4:21956462-21956481 None:intergenic 10.0%
!! ATTATAGAAAAATATGTTTA+AGG + Chr4:21957834-21957853 MsG0480019546.01.T01:intron 10.0%
!! TAAATTAATCCATATTAAAA+TGG - Chr4:21956023-21956042 None:intergenic 10.0%
!! TAATACTAAAAACAAAATTA+GGG - Chr4:21956491-21956510 None:intergenic 10.0%
!! TATTTAATAGTAGAAAAATA+TGG + Chr4:21958728-21958747 MsG0480019546.01.T01:intron 10.0%
!! TTATAGAAAAATATGTTTAA+GGG + Chr4:21957835-21957854 MsG0480019546.01.T01:intron 10.0%
!!! GTTACTTATTTTAAAATAAA+AGG + Chr4:21958791-21958810 MsG0480019546.01.T01:intron 10.0%
!!! TCTTTACTTTTTTTTTTTTT+GGG + Chr4:21956388-21956407 MsG0480019546.01.T01:intron 10.0%
!!! TTCTTTACTTTTTTTTTTTT+TGG + Chr4:21956387-21956406 MsG0480019546.01.T01:intron 10.0%
!! AAGATGATATAAAATTGATT+TGG - Chr4:21955983-21956002 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + Chr4:21956867-21956886 MsG0480019546.01.T01:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - Chr4:21956886-21956867 None:intergenic 15.0%
!! AATTCTCATCATAATTTAAA+AGG - Chr4:21956112-21956131 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - Chr4:21956646-21956665 None:intergenic 15.0%
!! ATTATAGGAAAATATGTTTA+AGG + Chr4:21957923-21957942 MsG0480019546.01.T01:intron 15.0%
!! CAACAATATAACATTATTAT+AGG + Chr4:21957908-21957927 MsG0480019546.01.T01:intron 15.0%
!! CTAATACTAAAAACAAAATT+AGG - Chr4:21956492-21956511 None:intergenic 15.0%
!! CTATAATAATGTTATATTGT+TGG - Chr4:21957821-21957840 None:intergenic 15.0%
!! GAAATATAAATGTAAAAAGT+AGG - Chr4:21958030-21958049 None:intergenic 15.0%
!! GAATAACAAAAATTAATAGT+TGG + Chr4:21957866-21957885 MsG0480019546.01.T01:intron 15.0%
!! TACAAAATTATAACTAACTA+TGG - Chr4:21957195-21957214 None:intergenic 15.0%
!! TACTATTAAATAAAGACAAA+TGG - Chr4:21958720-21958739 None:intergenic 15.0%
!! TTATAGGAAAATATGTTTAA+GGG + Chr4:21957924-21957943 MsG0480019546.01.T01:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + Chr4:21956777-21956796 MsG0480019546.01.T01:intron 15.0%
!! TTTACATTTATATTTCATTC+TGG + Chr4:21958034-21958053 MsG0480019546.01.T01:intron 15.0%
!!! ATATCATATTTTGGAATTAA+GGG + Chr4:21956179-21956198 MsG0480019546.01.T01:CDS 15.0%
!!! ATTAAATAGTAGAGTTTTTT+TGG - Chr4:21955943-21955962 None:intergenic 15.0%
!!! TGTTTGTGTTATTAAAAAAA+GGG - Chr4:21957804-21957823 None:intergenic 15.0%
!!! TTGTTTGTGTTATTAAAAAA+AGG - Chr4:21957805-21957824 None:intergenic 15.0%
!!! TTTTTGCAACAAATAATTTA+AGG - Chr4:21958236-21958255 None:intergenic 15.0%
!! AAACAAATTTGAATTGAGTA+GGG - Chr4:21956516-21956535 None:intergenic 20.0%
!! AATATATGTGAAATCGTTAA+AGG - Chr4:21960008-21960027 None:intergenic 20.0%
!! AATGCAGAAAAACAAAATTA+GGG - Chr4:21957346-21957365 None:intergenic 20.0%
!! AATTATGATGAGAATTGAAA+TGG + Chr4:21956116-21956135 MsG0480019546.01.T01:intron 20.0%
!! AGATGGAAGTTTAAAAAAAA+TGG - Chr4:21958867-21958886 None:intergenic 20.0%
!! ATATTCAAGATAACTATAGT+TGG + Chr4:21960376-21960395 MsG0480019546.01.T01:CDS 20.0%
!! GGATTATAAATGTTATGTTT+AGG + Chr4:21956137-21956156 MsG0480019546.01.T01:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - Chr4:21956517-21956536 None:intergenic 20.0%
!! TAACAAAATTTAGTTGAGTT+GGG - Chr4:21955920-21955939 None:intergenic 20.0%
!! TAATAAACAAACAATGTAGA+TGG - Chr4:21958884-21958903 None:intergenic 20.0%
!! TGCATTTACAAAACAAAATT+AGG - Chr4:21958299-21958318 None:intergenic 20.0%
!! TTAATAGTGACAATAAAGAT+TGG + Chr4:21955580-21955599 MsG0480019546.01.T01:intron 20.0%
!! TTCAAAATTGTAGTATTCAA+AGG + Chr4:21958381-21958400 MsG0480019546.01.T01:intron 20.0%
!! TTGGCTTAATATAATTTACA+GGG + Chr4:21960096-21960115 MsG0480019546.01.T01:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - Chr4:21956611-21956630 None:intergenic 20.0%
!!! ACATAGTATTTTAATGTGAA+AGG - Chr4:21958362-21958381 None:intergenic 20.0%
!!! AGGTTAATTAGTTTGTTATT+TGG - Chr4:21959050-21959069 None:intergenic 20.0%
!!! ATGATATAAAATTGATTTGG+TGG - Chr4:21955980-21955999 None:intergenic 20.0%
!!! ATTGGCTTAATATAATTTAC+AGG + Chr4:21960095-21960114 MsG0480019546.01.T01:intron 20.0%
!!! GATATCATATTTTGGAATTA+AGG + Chr4:21956178-21956197 MsG0480019546.01.T01:CDS 20.0%
!!! GTGTCTTTAAAAAATATCAT+TGG + Chr4:21958193-21958212 MsG0480019546.01.T01:intron 20.0%
!!! GTTATTTCGACAAAAAAAAA+AGG + Chr4:21958410-21958429 MsG0480019546.01.T01:intron 20.0%
!!! TAGAGAATTTGATTTAAGTA+AGG - Chr4:21959070-21959089 None:intergenic 20.0%
!!! TTTTTACTTATAACAGTCAT+GGG - Chr4:21958843-21958862 None:intergenic 20.0%
!!! TTTTTTACTTATAACAGTCA+TGG - Chr4:21958844-21958863 None:intergenic 20.0%
! AAAATTGTAGTATTCAAAGG+AGG + Chr4:21958384-21958403 MsG0480019546.01.T01:intron 25.0%
! AAATCTGAACAATTCAAGTA+AGG + Chr4:21960606-21960625 MsG0480019546.01.T01:CDS 25.0%
! AACCAACCAATATATAGATA+AGG - Chr4:21956364-21956383 None:intergenic 25.0%
! AACTTGATATCATATCTAAC+AGG + Chr4:21956203-21956222 MsG0480019546.01.T01:CDS 25.0%
! AAGTAAGGACTAAACTTATA+AGG - Chr4:21956447-21956466 None:intergenic 25.0%
! ACCAACCAATATATAGATAA+GGG - Chr4:21956363-21956382 None:intergenic 25.0%
! ACTTGATATCATATCTAACA+GGG + Chr4:21956204-21956223 MsG0480019546.01.T01:CDS 25.0%
! AGTATGATATATCAATCAAG+TGG + Chr4:21959954-21959973 MsG0480019546.01.T01:intron 25.0%
! ATAAATGTTATGTTTAGGTG+TGG + Chr4:21956142-21956161 MsG0480019546.01.T01:intron 25.0%
! ATGTATGTCTAGAAATGATT+CGG + Chr4:21959111-21959130 MsG0480019546.01.T01:intron 25.0%
! CAAGATTAGAACATTATGAA+AGG - Chr4:21956743-21956762 None:intergenic 25.0%
! CAATGCAGAAAAACAAAATT+AGG - Chr4:21957347-21957366 None:intergenic 25.0%
! CATAATATATGTTAGGATCA+GGG - Chr4:21958977-21958996 None:intergenic 25.0%
! CTATTTGATGAAATTCATGT+AGG + Chr4:21958486-21958505 MsG0480019546.01.T01:intron 25.0%
! CTTTGAATACAAGAAATGTT+AGG - Chr4:21958614-21958633 None:intergenic 25.0%
! GACATATAGGTTTAACATTA+AGG + Chr4:21960467-21960486 MsG0480019546.01.T01:CDS 25.0%
! GACATTGCATAATATATGTT+AGG - Chr4:21958984-21959003 None:intergenic 25.0%
! GTAACAAAATTTAGTTGAGT+TGG - Chr4:21955921-21955940 None:intergenic 25.0%
! TAATATAATTTACAGGGACT+AGG + Chr4:21960102-21960121 MsG0480019546.01.T01:intron 25.0%
! TCTTGAATATAAGTCAAGAT+CGG - Chr4:21960366-21960385 None:intergenic 25.0%
! TGCTGAAAATGTGAATATTT+GGG + Chr4:21956253-21956272 MsG0480019546.01.T01:CDS 25.0%
!! TAAGTTTACTTCAGTTGATA+AGG - Chr4:21959006-21959025 None:intergenic 25.0%
!! TCAACAATATCACCTATTTT+GGG - Chr4:21958650-21958669 None:intergenic 25.0%
!! TGAATTGTTCAGATTTTTGA+CGG - Chr4:21960602-21960621 None:intergenic 25.0%
!! TGATTTTCTCAAACTAGTAT+CGG - Chr4:21955672-21955691 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + Chr4:21957669-21957688 MsG0480019546.01.T01:intron 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + Chr4:21957668-21957687 MsG0480019546.01.T01:intron 25.0%
!!! TACAAAGTCGCTATTTTATA+GGG + Chr4:21957761-21957780 MsG0480019546.01.T01:intron 25.0%
!!! TATAAGGTCGCTATTTTATA+GGG - Chr4:21956431-21956450 None:intergenic 25.0%
!!! TATTTTAATGTGAAAGGTCT+AGG - Chr4:21958356-21958375 None:intergenic 25.0%
!!! TGAGTTAGTCCATTTTAATA+TGG + Chr4:21956011-21956030 MsG0480019546.01.T01:intron 25.0%
!!! TTACAAAGTCGCTATTTTAT+AGG + Chr4:21957760-21957779 MsG0480019546.01.T01:intron 25.0%
!!! TTATAAGGTCGCTATTTTAT+AGG - Chr4:21956432-21956451 None:intergenic 25.0%
!!! TTTGTTATTTGGATTAGTCA+AGG - Chr4:21959039-21959058 None:intergenic 25.0%
!!! TTTTAGCTAATAACAATGAC+AGG - Chr4:21959826-21959845 None:intergenic 25.0%
!!! TTTTTGTTTATAACAGTGAC+CGG + Chr4:21959927-21959946 MsG0480019546.01.T01:intron 25.0%
AAAATGAATCCCACATAAAG+TGG + Chr4:21958521-21958540 MsG0480019546.01.T01:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + Chr4:21956882-21956901 MsG0480019546.01.T01:intron 30.0%
ATAATGAAAGATCGTGTGTT+AGG - Chr4:21959786-21959805 None:intergenic 30.0%
ATATTGAGTGAAATCCATGT+AGG - Chr4:21958552-21958571 None:intergenic 30.0%
CAAATGGTCGAATATATCAA+AGG - Chr4:21958704-21958723 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - Chr4:21957606-21957625 None:intergenic 30.0%
CTGCTGAAAATGTGAATATT+TGG + Chr4:21956252-21956271 MsG0480019546.01.T01:CDS 30.0%
GATAACTATAGTTGGATTCT+TGG + Chr4:21960384-21960403 MsG0480019546.01.T01:CDS 30.0%
GCATAATATATGTTAGGATC+AGG - Chr4:21958978-21958997 None:intergenic 30.0%
GCTCTTTGAACTTTGATATT+TGG + Chr4:21955870-21955889 MsG0480019546.01.T01:intron 30.0%
GTATGATTCAGATGAAACTT+TGG + Chr4:21955892-21955911 MsG0480019546.01.T01:intron 30.0%
GTTAGGATATGTAGAGTAAA+GGG - Chr4:21959769-21959788 None:intergenic 30.0%
TATAGTTGGATTCTTGGATT+TGG + Chr4:21960390-21960409 MsG0480019546.01.T01:CDS 30.0%
TCCCTTATCTATATATTGGT+TGG + Chr4:21956359-21956378 MsG0480019546.01.T01:intron 30.0%
TGCTTCCCTTATCTATATAT+TGG + Chr4:21956355-21956374 MsG0480019546.01.T01:CDS 30.0%
TGTTAGGATATGTAGAGTAA+AGG - Chr4:21959770-21959789 None:intergenic 30.0%
TTCTATATCCGTTGTTGATA+AGG - Chr4:21960562-21960581 None:intergenic 30.0%
! AAGAGTCCTTTTCTTAGAAT+CGG + Chr4:21960498-21960517 MsG0480019546.01.T01:CDS 30.0%
! GACAATCAATTTTCTTGTTC+CGG - Chr4:21959659-21959678 None:intergenic 30.0%
! GTCAACAATATCACCTATTT+TGG - Chr4:21958651-21958670 None:intergenic 30.0%
! TAACTGGTGGTATTTTACTA+TGG + Chr4:21960317-21960336 MsG0480019546.01.T01:CDS 30.0%
!! AATCAAACTTCGTTTTAGCA+GGG + Chr4:21956806-21956825 MsG0480019546.01.T01:intron 30.0%
!! CACAAGGTCGTTATTTTATA+GGG - Chr4:21957286-21957305 None:intergenic 30.0%
!! TAATCAAACTTCGTTTTAGC+AGG + Chr4:21956805-21956824 MsG0480019546.01.T01:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + Chr4:21956898-21956917 MsG0480019546.01.T01:intron 30.0%
!! TCACAAGGTCGTTATTTTAT+AGG - Chr4:21957287-21957306 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + Chr4:21956897-21956916 MsG0480019546.01.T01:intron 30.0%
!!! GGTGAACAAATGAGTTTTTT+AGG + Chr4:21958944-21958963 MsG0480019546.01.T01:intron 30.0%
!!! TCTAGTGGATTCATCTTTTA+AGG + Chr4:21958923-21958942 MsG0480019546.01.T01:intron 30.0%
!!! TTTTTTGTCAAGTAGTCTAG+TGG + Chr4:21958908-21958927 MsG0480019546.01.T01:intron 30.0%
AAGAAAGTGAGAAGTTCATG+AGG + Chr4:21959319-21959338 MsG0480019546.01.T01:intron 35.0%
AAGTAAGGACTAAACTCACA+AGG - Chr4:21957302-21957321 None:intergenic 35.0%
AGATCAGCTTGGTTTATCAT+AGG + Chr4:21955529-21955548 MsG0480019546.01.T01:CDS 35.0%
AGCTAATAACAATGACAGGA+GGG - Chr4:21959822-21959841 None:intergenic 35.0%
AGTTGGAAAGTCAATGTACA+TGG + Chr4:21957972-21957991 MsG0480019546.01.T01:intron 35.0%
ATAAAGTGGTTAGACCTACA+TGG + Chr4:21958535-21958554 MsG0480019546.01.T01:intron 35.0%
ATCAACAACGGATATAGAAG+AGG + Chr4:21960563-21960582 MsG0480019546.01.T01:CDS 35.0%
ATCATGAGAATTGTACCTGT+TGG + Chr4:21959438-21959457 MsG0480019546.01.T01:intron 35.0%
CAGGTACAATTCTCATGATA+AGG - Chr4:21959437-21959456 None:intergenic 35.0%
CATGAACTTCTCACTTTCTT+GGG - Chr4:21959319-21959338 None:intergenic 35.0%
CATTGAATGAGTGATGTATG+TGG + Chr4:21959861-21959880 MsG0480019546.01.T01:intron 35.0%
CTAAGGCCTAGGTATATATA+GGG + Chr4:21959387-21959406 MsG0480019546.01.T01:intron 35.0%
CTAGAAGCTCATTCTTTAAC+TGG + Chr4:21960301-21960320 MsG0480019546.01.T01:CDS 35.0%
GAAAATGTGAATATTTGGGC+TGG + Chr4:21956257-21956276 MsG0480019546.01.T01:CDS 35.0%
GCTCAATTAGCTATTGTTGA+TGG + Chr4:21955454-21955473 MsG0480019546.01.T01:CDS 35.0%
TAAGGCCTAGGTATATATAG+GGG + Chr4:21959388-21959407 MsG0480019546.01.T01:intron 35.0%
TACTTATAACAGTCATGGGA+GGG - Chr4:21958839-21958858 None:intergenic 35.0%
TAGCTAATAACAATGACAGG+AGG - Chr4:21959823-21959842 None:intergenic 35.0%
TAGGTCTAACCACTTTATGT+GGG - Chr4:21958533-21958552 None:intergenic 35.0%
TCATGAACTTCTCACTTTCT+TGG - Chr4:21959320-21959339 None:intergenic 35.0%
TTACTTATAACAGTCATGGG+AGG - Chr4:21958840-21958859 None:intergenic 35.0%
TTGATATATCATACTGCCTC+CGG - Chr4:21959949-21959968 None:intergenic 35.0%
! AAACCTTGTGTTCAAGCTTT+TGG + Chr4:21960237-21960256 MsG0480019546.01.T01:CDS 35.0%
! AACCTTGTGTTCAAGCTTTT+GGG + Chr4:21960238-21960257 MsG0480019546.01.T01:CDS 35.0%
! GCAGAGAGGATATCATATTT+TGG + Chr4:21956170-21956189 MsG0480019546.01.T01:CDS 35.0%
! GCTTTGATTGTTTTCTTGCT+TGG + Chr4:21960438-21960457 MsG0480019546.01.T01:CDS 35.0%
! TGGTATTTTACTATGGTTGC+AGG + Chr4:21960324-21960343 MsG0480019546.01.T01:CDS 35.0%
! TTGTTTTCTTGCTTGGAACA+AGG + Chr4:21960445-21960464 MsG0480019546.01.T01:CDS 35.0%
!! ACTAGAGAGTGTTAGAAAGA+AGG - Chr4:21958449-21958468 None:intergenic 35.0%
!! CAATATCACCTATTTTGGGA+CGG - Chr4:21958646-21958665 None:intergenic 35.0%
!! TCTCAAACTAGTATCGGTAT+CGG - Chr4:21955666-21955685 None:intergenic 35.0%
!! TTCATTGCTGATTCCTTTCT+TGG + Chr4:21956311-21956330 MsG0480019546.01.T01:CDS 35.0%
!!! ATTGGCTCATGTTTTGATGT+TGG + Chr4:21960070-21960089 MsG0480019546.01.T01:intron 35.0%
!!! CATGTTTTGATGTTGGTCAT+TGG + Chr4:21960077-21960096 MsG0480019546.01.T01:intron 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG - Chr4:21957471-21957490 None:intergenic 35.0%
AATCCGATTCTACTCAGATC+CGG - Chr4:21959621-21959640 None:intergenic 40.0%
AATGAAGCACATTCAGTCCT+CGG - Chr4:21955765-21955784 None:intergenic 40.0%
AATGTGAGATCTTCTGCTGA+GGG - Chr4:21959741-21959760 None:intergenic 40.0%
ACAACGGATATAGAAGAGGA+TGG + Chr4:21960567-21960586 MsG0480019546.01.T01:CDS 40.0%
AGCTTCTAACAACACTTCGT+TGG - Chr4:21955437-21955456 None:intergenic 40.0%
ATACCTATGAAGCACAGACA+CGG + Chr4:21955622-21955641 MsG0480019546.01.T01:intron 40.0%
ATGAATTCAACTCCTACAGC+TGG + Chr4:21955804-21955823 MsG0480019546.01.T01:intron 40.0%
ATTCGACGAAAAATATCCCG+AGG + Chr4:21960269-21960288 MsG0480019546.01.T01:CDS 40.0%
CCCTAAAATCCACCAGATTA+CGG - Chr4:21959558-21959577 None:intergenic 40.0%
CCTAACCCCTATATATACCT+AGG - Chr4:21959396-21959415 None:intergenic 40.0%
CCTAGGTATATATAGGGGTT+AGG + Chr4:21959393-21959412 MsG0480019546.01.T01:intron 40.0%
GAAAACGGCAAATAGATCAG+CGG - Chr4:21959191-21959210 None:intergenic 40.0%
GAAGCTCATTCTTTAACTGG+TGG + Chr4:21960304-21960323 MsG0480019546.01.T01:CDS 40.0%
GAGAATTGTACCTGTTGGTA+CGG + Chr4:21959443-21959462 MsG0480019546.01.T01:intron 40.0%
GATCTGAGTAGAATCGGATT+GGG + Chr4:21959621-21959640 MsG0480019546.01.T01:intron 40.0%
GCAAATAGGGATAGACAGAT+AGG + Chr4:21960044-21960063 MsG0480019546.01.T01:intron 40.0%
GCGAAACACCTTATCAACAA+CGG + Chr4:21960551-21960570 MsG0480019546.01.T01:CDS 40.0%
GCTAAGGCCTAGGTATATAT+AGG + Chr4:21959386-21959405 MsG0480019546.01.T01:intron 40.0%
GGATAGACAGATAGGCATAT+TGG + Chr4:21960052-21960071 MsG0480019546.01.T01:intron 40.0%
GTAACCAGATTTGGACCTAA+CGG - Chr4:21955506-21955525 None:intergenic 40.0%
GTAGAACAAGATGTGAGTGA+AGG - Chr4:21960153-21960172 None:intergenic 40.0%
GTAGGTCTAACCACTTTATG+TGG - Chr4:21958534-21958553 None:intergenic 40.0%
GTATGGTATCGCATGGTTAA+TGG + Chr4:21959588-21959607 MsG0480019546.01.T01:intron 40.0%
GTTATGTTTAGGTGTGGAAG+TGG + Chr4:21956148-21956167 MsG0480019546.01.T01:intron 40.0%
TAATGTGAGATCTTCTGCTG+AGG - Chr4:21959742-21959761 None:intergenic 40.0%
TATCTAGTTGCCATTGGACA+AGG + Chr4:21960207-21960226 MsG0480019546.01.T01:CDS 40.0%
TCACTCTATCTAGTTGCCAT+TGG + Chr4:21960201-21960220 MsG0480019546.01.T01:CDS 40.0%
TCGTTGCAGCTGTAAGAAAT+TGG + Chr4:21960529-21960548 MsG0480019546.01.T01:CDS 40.0%
TGATCTCCAGTAACCAGATT+TGG - Chr4:21955515-21955534 None:intergenic 40.0%
TGCTTGGAACAAGGACATAT+AGG + Chr4:21960454-21960473 MsG0480019546.01.T01:CDS 40.0%
TTACAGCTGCAACGAATACA+CGG - Chr4:21960524-21960543 None:intergenic 40.0%
TTAGGTCCAAATCTGGTTAC+TGG + Chr4:21955506-21955525 MsG0480019546.01.T01:CDS 40.0%
TTGTTTATAACAGTGACCGG+AGG + Chr4:21959930-21959949 MsG0480019546.01.T01:intron 40.0%
TTTATGTCCACCTTGTCCAA+TGG - Chr4:21960220-21960239 None:intergenic 40.0%
! ACCTTGTGTTCAAGCTTTTG+GGG + Chr4:21960239-21960258 MsG0480019546.01.T01:CDS 40.0%
! TTTAAGGCCGTGATAACAAG+TGG - Chr4:21958220-21958239 None:intergenic 40.0%
!! ATGATTCGGTTTCACCTAAG+AGG + Chr4:21959125-21959144 MsG0480019546.01.T01:intron 40.0%
!! CATTGGACCACTTGTTATCA+CGG + Chr4:21958210-21958229 MsG0480019546.01.T01:intron 40.0%
!! GATTCTAGTTCCTAACAGAC+TGG + Chr4:21956054-21956073 MsG0480019546.01.T01:intron 40.0%
!! TATCGCATGGTTAATGGACT+CGG + Chr4:21959594-21959613 MsG0480019546.01.T01:intron 40.0%
!!! ACCGTAATCTGGTGGATTTT+AGG + Chr4:21959554-21959573 MsG0480019546.01.T01:intron 40.0%
!!! CCGTAATCTGGTGGATTTTA+GGG + Chr4:21959555-21959574 MsG0480019546.01.T01:intron 40.0%
!!! TATTTGCCGTTTTCCTGGTT+CGG + Chr4:21959197-21959216 MsG0480019546.01.T01:intron 40.0%
!!! TGATCTATTTGCCGTTTTCC+TGG + Chr4:21959192-21959211 MsG0480019546.01.T01:intron 40.0%
AAGAGGATGGTTGAGCTACT+TGG + Chr4:21959142-21959161 MsG0480019546.01.T01:intron 45.0%
ACCAATGCATGTCCAACATC+AGG + Chr4:21955728-21955747 MsG0480019546.01.T01:intron 45.0%
AGTAGCTCAACCATCCTCTT+AGG - Chr4:21959142-21959161 None:intergenic 45.0%
AGTGAGAAGTTCATGAGGAG+AGG + Chr4:21959324-21959343 MsG0480019546.01.T01:intron 45.0%
ATAGTTACCCACGAGGTTCA+AGG - Chr4:21959526-21959545 None:intergenic 45.0%
CAGTGGTGAGATGATGACTT+TGG + Chr4:21959225-21959244 MsG0480019546.01.T01:intron 45.0%
CTTCTCACTTTCTTGGGTGT+CGG - Chr4:21959313-21959332 None:intergenic 45.0%
GAGGAGAGGTCACAAGTTTA+GGG + Chr4:21959338-21959357 MsG0480019546.01.T01:intron 45.0%
GATAAGACGTGTCCTGATGT+TGG - Chr4:21955743-21955762 None:intergenic 45.0%
GATGATGACTTTGGTGAGGT+TGG + Chr4:21959234-21959253 MsG0480019546.01.T01:intron 45.0%
GCTTCTCTACTTCCTCTCTT+TGG + Chr4:21956284-21956303 MsG0480019546.01.T01:CDS 45.0%
GGATCTGAGTAGAATCGGAT+TGG + Chr4:21959620-21959639 MsG0480019546.01.T01:intron 45.0%
GGGAAGCAAGTATGATTGTG+CGG - Chr4:21956343-21956362 None:intergenic 45.0%
GTGAGATGATGACTTTGGTG+AGG + Chr4:21959230-21959249 MsG0480019546.01.T01:intron 45.0%
GTTCCTAACAGACTGGAAAG+TGG + Chr4:21956061-21956080 MsG0480019546.01.T01:intron 45.0%
TACTCACTCCGTCCCAAAAT+AGG + Chr4:21958635-21958654 MsG0480019546.01.T01:intron 45.0%
TAGTTACCCACGAGGTTCAA+GGG - Chr4:21959525-21959544 None:intergenic 45.0%
TCATACCTGACCTAAGGCTA+AGG + Chr4:21959370-21959389 MsG0480019546.01.T01:intron 45.0%
TCCTGATGTTGGACATGCAT+TGG - Chr4:21955732-21955751 None:intergenic 45.0%
TGAACCTCGTGGGTAACTAT+CGG + Chr4:21959526-21959545 MsG0480019546.01.T01:intron 45.0%
TGAGGAGAGGTCACAAGTTT+AGG + Chr4:21959337-21959356 MsG0480019546.01.T01:intron 45.0%
TGTCCACTTTCCAGTCTGTT+AGG - Chr4:21956067-21956086 None:intergenic 45.0%
TTCGGTTTCACCTAAGAGGA+TGG + Chr4:21959129-21959148 MsG0480019546.01.T01:intron 45.0%
! ACACGGCCGATTCTAAGAAA+AGG - Chr4:21960507-21960526 None:intergenic 45.0%
! GAAGTGTCATACCTGACCTA+AGG + Chr4:21959364-21959383 MsG0480019546.01.T01:intron 45.0%
! GATGGAGTCGTTGACTACAT+AGG + Chr4:21955472-21955491 MsG0480019546.01.T01:CDS 45.0%
! GATTGGGCTTTATCTCAGTC+CGG + Chr4:21959637-21959656 MsG0480019546.01.T01:intron 45.0%
! TATACCTAGGCCTTAGCCTT+AGG - Chr4:21959383-21959402 None:intergenic 45.0%
! TTTGCAGTGCTCTGGTTTAG+TGG - Chr4:21956230-21956249 None:intergenic 45.0%
!! ATCGCATGGTTAATGGACTC+GGG + Chr4:21959595-21959614 MsG0480019546.01.T01:intron 45.0%
!! GCAATGAAAGCACCAAAGAG+AGG - Chr4:21956299-21956318 None:intergenic 45.0%
!! TTGTGTTCAAGCTTTTGGGG+CGG + Chr4:21960242-21960261 MsG0480019546.01.T01:CDS 45.0%
!!! AAAATTTCTTATTTTTTTAA+GGG + Chr4:21957243-21957262 MsG0480019546.01.T01:intron 5.0%
!!! ATAAGTAAATTTTTTTTATA+GGG + Chr4:21956838-21956857 MsG0480019546.01.T01:intron 5.0%
!!! ATAAGTAATTTTTTTTTATA+GGG + Chr4:21957701-21957720 MsG0480019546.01.T01:intron 5.0%
!!! TAAAATTTCTTATTTTTTTA+AGG + Chr4:21957242-21957261 MsG0480019546.01.T01:intron 5.0%
!!! TAAATAAAGATTTATTTTTT+TGG + Chr4:21958104-21958123 MsG0480019546.01.T01:intron 5.0%
!!! TATAAGTAAATTTTTTTTAT+AGG + Chr4:21956837-21956856 MsG0480019546.01.T01:intron 5.0%
!!! TATAAGTAATTTTTTTTTAT+AGG + Chr4:21957700-21957719 MsG0480019546.01.T01:intron 5.0%
AATCCACCAGATTACGGTGC+AGG - Chr4:21959552-21959571 None:intergenic 50.0%
ACATAGGACAACCTGCCGTT+AGG + Chr4:21955488-21955507 MsG0480019546.01.T01:CDS 50.0%
ATCAGGACACGTCTTATCCG+AGG + Chr4:21955745-21955764 MsG0480019546.01.T01:intron 50.0%
CAACCGTGTCTGTGCTTCAT+AGG - Chr4:21955628-21955647 None:intergenic 50.0%
CTAGTTGCCATTGGACAAGG+TGG + Chr4:21960210-21960229 MsG0480019546.01.T01:CDS 50.0%
CTGGTTACTGGAGATCAGCT+TGG + Chr4:21955518-21955537 MsG0480019546.01.T01:CDS 50.0%
GCCCCAAAAGCTTGAACACA+AGG - Chr4:21960243-21960262 None:intergenic 50.0%
GTACCTGTTGGTACGGATGT+GGG + Chr4:21959450-21959469 MsG0480019546.01.T01:intron 50.0%
GTTCAGCCGAACCAGGAAAA+CGG - Chr4:21959206-21959225 None:intergenic 50.0%
TACTATGGTTGCAGGTGCCA+CGG + Chr4:21960332-21960351 MsG0480019546.01.T01:CDS 50.0%
TGAAGCACAGACACGGTTGT+TGG + Chr4:21955629-21955648 MsG0480019546.01.T01:intron 50.0%
TGTACCTGTTGGTACGGATG+TGG + Chr4:21959449-21959468 MsG0480019546.01.T01:intron 50.0%
TTACCCACATCCGTACCAAC+AGG - Chr4:21959456-21959475 None:intergenic 50.0%
! TTTAGGGTGTGCTCGTCGTA+TGG + Chr4:21959571-21959590 MsG0480019546.01.T01:intron 50.0%
!! ACTTGGTTCTGCCGTCTGTT+GGG + Chr4:21959159-21959178 MsG0480019546.01.T01:intron 50.0%
!! AGCGGATTAACCCCAACAGA+CGG - Chr4:21959173-21959192 None:intergenic 50.0%
!! CTTCTAGCTCTATGCTCCTC+GGG - Chr4:21960288-21960307 None:intergenic 50.0%
!! GCTTCTAGCTCTATGCTCCT+CGG - Chr4:21960289-21960308 None:intergenic 50.0%
!! TACTTGGTTCTGCCGTCTGT+TGG + Chr4:21959158-21959177 MsG0480019546.01.T01:intron 50.0%
AACCCCCCTTTGTCTCTACC+AGG - Chr4:21959273-21959292 None:intergenic 55.0%
ACCCCCCTTTGTCTCTACCA+GGG - Chr4:21959272-21959291 None:intergenic 55.0%
AGCCCCTGGTAGAGACAAAG+GGG + Chr4:21959266-21959285 MsG0480019546.01.T01:intron 55.0%
ATGTGGGTAACCCTTAGCCC+TGG + Chr4:21959466-21959485 MsG0480019546.01.T01:intron 55.0%
CAGCCCCTGGTAGAGACAAA+GGG + Chr4:21959265-21959284 MsG0480019546.01.T01:intron 55.0%
CCAGATTTGGACCTAACGGC+AGG - Chr4:21955502-21955521 None:intergenic 55.0%
CCTGCCGTTAGGTCCAAATC+TGG + Chr4:21955499-21955518 MsG0480019546.01.T01:CDS 55.0%
CTGACCTAAGGCTAAGGCCT+AGG + Chr4:21959376-21959395 MsG0480019546.01.T01:intron 55.0%
GCTCGTCGTATGGTATCGCA+TGG + Chr4:21959581-21959600 MsG0480019546.01.T01:intron 55.0%
GGGCCGGATCTGAGTAGAAT+CGG + Chr4:21959615-21959634 MsG0480019546.01.T01:intron 55.0%
GGTCAACCCTTGAACCTCGT+GGG + Chr4:21959516-21959535 MsG0480019546.01.T01:intron 55.0%
TAGGTGTGGAAGTGGCAGAG+AGG + Chr4:21956156-21956175 MsG0480019546.01.T01:intron 55.0%
TATCGGCCTGCACCGTAATC+TGG + Chr4:21959543-21959562 MsG0480019546.01.T01:intron 55.0%
TCAGCCCCTGGTAGAGACAA+AGG + Chr4:21959264-21959283 MsG0480019546.01.T01:intron 55.0%
TGGTCAACCCTTGAACCTCG+TGG + Chr4:21959515-21959534 MsG0480019546.01.T01:intron 55.0%
TGTGCGGTAGCGTCCAAGAA+AGG - Chr4:21956327-21956346 None:intergenic 55.0%
TGTGGGTAACCCTTAGCCCT+GGG + Chr4:21959467-21959486 MsG0480019546.01.T01:intron 55.0%
! CAGCAGCTTTTGCAGTGCTC+TGG - Chr4:21956238-21956257 None:intergenic 55.0%
!! CAAGATCGGAAGTGTTGCCG+TGG - Chr4:21960352-21960371 None:intergenic 55.0%
!! CATGGTTAATGGACTCGGGC+CGG + Chr4:21959599-21959618 MsG0480019546.01.T01:intron 55.0%
!! CTAGGCCTTAGCCTTAGGTC+AGG - Chr4:21959378-21959397 None:intergenic 55.0%
!! CTTGGTTCTGCCGTCTGTTG+GGG + Chr4:21959160-21959179 MsG0480019546.01.T01:intron 55.0%
!! TTCCTGGTTCGGCTGAACAG+TGG + Chr4:21959208-21959227 MsG0480019546.01.T01:intron 55.0%
AAGGTAGCTCCCCAGGGCTA+AGG - Chr4:21959480-21959499 None:intergenic 60.0%
AGGGTTGACCACGCTCATGC+AGG - Chr4:21959506-21959525 None:intergenic 60.0%
AGGTAGCTCCCCAGGGCTAA+GGG - Chr4:21959479-21959498 None:intergenic 60.0%
CACCACTGTTCAGCCGAACC+AGG - Chr4:21959213-21959232 None:intergenic 60.0%
CAGGCCGATAGTTACCCACG+AGG - Chr4:21959533-21959552 None:intergenic 60.0%
CCCCCCTTTGTCTCTACCAG+GGG - Chr4:21959271-21959290 None:intergenic 60.0%
CCCCTGGTAGAGACAAAGGG+GGG + Chr4:21959268-21959287 MsG0480019546.01.T01:intron 60.0%
GCCCCTGGTAGAGACAAAGG+GGG + Chr4:21959267-21959286 MsG0480019546.01.T01:intron 60.0%
GTGGGTAACCCTTAGCCCTG+GGG + Chr4:21959468-21959487 MsG0480019546.01.T01:intron 60.0%
GTTGGTTGATCGTCAGCCCC+TGG + Chr4:21959252-21959271 MsG0480019546.01.T01:intron 60.0%
TAGCCCTGGGGAGCTACCTT+CGG + Chr4:21959480-21959499 MsG0480019546.01.T01:intron 60.0%
ACCACGCTCATGCAGGCCGA+AGG - Chr4:21959499-21959518 None:intergenic 65.0%
ACCTTCGGCCTGCATGAGCG+TGG + Chr4:21959495-21959514 MsG0480019546.01.T01:intron 65.0%
AGGCCGAAGGTAGCTCCCCA+GGG - Chr4:21959486-21959505 None:intergenic 65.0%
CGGCCTGCACCGTAATCTGG+TGG + Chr4:21959546-21959565 MsG0480019546.01.T01:intron 65.0%
CGTCTAGCAGCGCCAGCTGT+AGG - Chr4:21955819-21955838 None:intergenic 65.0%
CAGGCCGAAGGTAGCTCCCC+AGG - Chr4:21959487-21959506 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 21955424 21960626 21955424 ID=MsG0480019546.01;Name=MsG0480019546.01
Chr4 mRNA 21955424 21960626 21955424 ID=MsG0480019546.01.T01;Parent=MsG0480019546.01;Name=MsG0480019546.01.T01;_AED=0.44;_eAED=0.44;_QI=0|1|0.33|1|1|1|3|0|284
Chr4 exon 21955424 21955550 21955424 ID=MsG0480019546.01.T01:exon:8304;Parent=MsG0480019546.01.T01
Chr4 exon 21956159 21956376 21956159 ID=MsG0480019546.01.T01:exon:8305;Parent=MsG0480019546.01.T01
Chr4 exon 21960117 21960626 21960117 ID=MsG0480019546.01.T01:exon:8306;Parent=MsG0480019546.01.T01
Chr4 CDS 21955424 21955550 21955424 ID=MsG0480019546.01.T01:cds;Parent=MsG0480019546.01.T01
Chr4 CDS 21956159 21956376 21956159 ID=MsG0480019546.01.T01:cds;Parent=MsG0480019546.01.T01
Chr4 CDS 21960117 21960626 21960117 ID=MsG0480019546.01.T01:cds;Parent=MsG0480019546.01.T01
Gene Sequence

>MsG0480019546.01.T01

ATGGCAGAATCCAACGAAGTGTTGTTAGAAGCTCAATTAGCTATTGTTGATGGAGTCGTTGACTACATAGGACAACCTGCCGTTAGGTCCAAATCTGGTTACTGGAGATCAGCTTGGTTTATCATAGGTGTGGAAGTGGCAGAGAGGATATCATATTTTGGAATTAAGGGAAACTTGATATCATATCTAACAGGGCCACTAAACCAGAGCACTGCAAAAGCTGCTGAAAATGTGAATATTTGGGCTGGAACTGCTTCTCTACTTCCTCTCTTTGGTGCTTTCATTGCTGATTCCTTTCTTGGACGCTACCGCACAATCATACTTGCTTCCCTTATCTATATATTGGGACTAGGCTTGTTAACATTTTCAACTATGCTTCCTTCACTCACATCTTGTTCTACTCAATCACAAGTAATCTTATTCTTCATCTCACTCTATCTAGTTGCCATTGGACAAGGTGGACATAAACCTTGTGTTCAAGCTTTTGGGGCGGATCAATTCGACGAAAAATATCCCGAGGAGCATAGAGCTAGAAGCTCATTCTTTAACTGGTGGTATTTTACTATGGTTGCAGGTGCCACGGCAACACTTCCGATCTTGACTTATATTCAAGATAACTATAGTTGGATTCTTGGATTTGGAATCTCTTGTGTTGTAATGATCATTGCTTTGATTGTTTTCTTGCTTGGAACAAGGACATATAGGTTTAACATTAAGGATAATAATAAGAGTCCTTTTCTTAGAATCGGCCGTGTATTCGTTGCAGCTGTAAGAAATTGGCGAAACACCTTATCAACAACGGATATAGAAGAGGATGGACTACTTCGCCGTCAAAAATCTGAACAATTCAAGTAA
Protein sequence

>MsG0480019546.01.T01

MAESNEVLLEAQLAIVDGVVDYIGQPAVRSKSGYWRSAWFIIGVEVAERISYFGIKGNLISYLTGPLNQSTAKAAENVNIWAGTASLLPLFGAFIADSFLGRYRTIILASLIYILGLGLLTFSTMLPSLTSCSTQSQVILFFISLYLVAIGQGGHKPCVQAFGADQFDEKYPEEHRARSSFFNWWYFTMVAGATATLPILTYIQDNYSWILGFGISCVVMIIALIVFLLGTRTYRFNIKDNNKSPFLRIGRVFVAAVRNWRNTLSTTDIEEDGLLRRQKSEQFK*