AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014756.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014756.01.T01 MTR_3g463760 83.663 202 23 3 23 218 334 531 1.96e-104 311
MsG0380014756.01.T01 MTR_3g040680 50.000 194 83 5 33 213 337 529 3.83e-49 168
MsG0380014756.01.T01 MTR_3g099120 48.469 196 83 5 23 208 329 516 1.02e-47 164
MsG0380014756.01.T01 MTR_8g010690 47.337 169 71 4 44 196 73 239 3.79e-39 135
MsG0380014756.01.T01 MTR_8g010590 44.944 178 80 4 44 205 330 505 1.96e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014756.01.T01 AT1G07230 63.107 206 59 4 23 218 335 533 4.44e-82 254
MsG0380014756.01.T01 AT3G48610 59.603 151 58 3 57 205 368 517 7.04e-50 170
MsG0380014756.01.T01 AT2G26870 51.337 187 76 6 33 205 327 512 4.60e-48 165
MsG0380014756.01.T01 AT3G03520 41.667 192 83 8 23 198 320 498 3.19e-32 122
MsG0380014756.01.T01 AT3G03530 41.111 180 88 5 23 193 320 490 2.85e-31 120
MsG0380014756.01.T01 AT3G03540 39.344 183 93 5 23 196 319 492 7.51e-28 110
MsG0380014756.01.T01 AT3G03520 46.939 98 34 5 23 111 320 408 1.45e-14 72.0

Find 75 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTCTTTGTTAGGAAAT+TGG 0.222961 3:-59499395 None:intergenic
ATTTACGAAATTAAAATTCT+TGG 0.233491 3:-59500842 None:intergenic
GTAAGATTCCAACTGCTTTC+GGG 0.237675 3:-59500590 None:intergenic
GGCCTAACCCCGTATTATTT+AGG 0.249494 3:+59497872 MsG0380014756.01.T01:CDS
CCGAATCCGGATGGGATTAT+TGG 0.257734 3:+59497850 MsG0380014756.01.T01:CDS
AGTAAGATTCCAACTGCTTT+CGG 0.261842 3:-59500591 None:intergenic
GAAAGACTTGAATCTTCTTT+TGG 0.268698 3:-59500334 None:intergenic
CTCAATTCCTATCCAAATAT+CGG 0.270840 3:+59500412 MsG0380014756.01.T01:CDS
TCATTTCGCCTTGGATTGAT+AGG 0.313535 3:+59497929 MsG0380014756.01.T01:CDS
GAATGTTCATATTGAGAATA+TGG 0.343966 3:-59499334 None:intergenic
ACCAGACAATTGATTAGTTA+TGG 0.366429 3:+59500742 MsG0380014756.01.T01:three_prime_UTR
CCCAGGCATCTCTCTTTGTT+AGG 0.370029 3:-59499402 None:intergenic
ATTATTTAGGTTTGATCGGT+TGG 0.372274 3:+59497885 MsG0380014756.01.T01:CDS
CTTAGATTAATCTTCACTTC+AGG 0.378193 3:-59500301 None:intergenic
TGAAAATTCTTTACTGTGGC+AGG 0.379052 3:-59499364 None:intergenic
AAGATTAATCTAAGGCCATT+TGG 0.382214 3:+59500310 MsG0380014756.01.T01:CDS
TATCTTTCTTAAATATCATA+TGG 0.386565 3:-59500675 None:intergenic
CGAATCCGGATGGGATTATT+GGG 0.387231 3:+59497851 MsG0380014756.01.T01:CDS
GGTTGTTGGTGTTCCGAATC+CGG 0.392687 3:+59497837 MsG0380014756.01.T01:CDS
CTGAAGTGAAGATTAATCTA+AGG 0.394932 3:+59500302 MsG0380014756.01.T01:CDS
ACCATAACTAATCAATTGTC+TGG 0.397346 3:-59500743 None:intergenic
CAACAGAAACTCTGCTGGTA+AGG 0.399781 3:-59500561 None:intergenic
CCAATAATCCCATCCGGATT+CGG 0.405419 3:-59497850 None:intergenic
ACCAGCAGAGTTTCTGTTGG+AGG 0.410016 3:+59500565 MsG0380014756.01.T01:CDS
CCGATCAAACCTAAATAATA+CGG 0.419156 3:-59497881 None:intergenic
TTCTTGCAGTGATCATGAAC+CGG 0.425321 3:+59499300 MsG0380014756.01.T01:intron
TTATTTAGGTTTGATCGGTT+GGG 0.447299 3:+59497886 MsG0380014756.01.T01:CDS
GAATATGGCGTTGGACCATC+CGG 0.456975 3:-59499319 None:intergenic
AAGTCTTTCAGAATTTCAAA+TGG 0.465884 3:+59500348 MsG0380014756.01.T01:CDS
AACCTAAATAATACGGGGTT+AGG 0.467037 3:-59497874 None:intergenic
CATGTTCCTACGCCGGTTGT+TGG 0.473251 3:+59497823 MsG0380014756.01.T01:CDS
CGATCAAACCTAAATAATAC+GGG 0.479573 3:-59497880 None:intergenic
GTGAAGAGGTTTCTTGAAGC+AGG 0.479642 3:+59500481 MsG0380014756.01.T01:CDS
TCAATTCCTATCCAAATATC+GGG 0.482814 3:+59500413 MsG0380014756.01.T01:CDS
CTTACCAGCAGAGTTTCTGT+TGG 0.489906 3:+59500562 MsG0380014756.01.T01:CDS
GGAAAGGCTGCTCTTAAAGC+TGG 0.495046 3:+59500502 MsG0380014756.01.T01:CDS
CCGTATTATTTAGGTTTGAT+CGG 0.496945 3:+59497881 MsG0380014756.01.T01:CDS
ACTCCTCGTGATGATTGTCC+AGG 0.499421 3:+59499460 MsG0380014756.01.T01:CDS
CGTTGAGCTGAGATGCTAGC+TGG 0.499553 3:-59500378 None:intergenic
CAAGGCGAAATGAGAAAAGT+TGG 0.501493 3:-59497919 None:intergenic
GTTGGTGTTCCGAATCCGGA+TGG 0.506518 3:+59497841 MsG0380014756.01.T01:CDS
ATTTAAGAAAGATATACTAA+TGG 0.518748 3:+59500684 MsG0380014756.01.T01:three_prime_UTR
GGATTCGGAACACCAACAAC+CGG 0.529881 3:-59497835 None:intergenic
ACAAAGAGAGATGCCTGGGC+TGG 0.544106 3:+59499406 MsG0380014756.01.T01:CDS
ACTAATTTATTCACAACTAG+AGG 0.545914 3:+59500611 MsG0380014756.01.T01:exon
TGGAGGTTCCCGAAAGCAGT+TGG 0.546637 3:+59500582 MsG0380014756.01.T01:CDS
GAGGTTTCTTGAAGCAGGAA+AGG 0.547860 3:+59500486 MsG0380014756.01.T01:CDS
TCCTAACAAAGAGAGATGCC+TGG 0.547901 3:+59499401 MsG0380014756.01.T01:CDS
AACAGAAACTCTGCTGGTAA+GGG 0.558897 3:-59500560 None:intergenic
TTGGTGTTCCGAATCCGGAT+GGG 0.558935 3:+59497842 MsG0380014756.01.T01:CDS
TCATATTGAGAATATGGCGT+TGG 0.561607 3:-59499328 None:intergenic
ACCTCCAACAGAAACTCTGC+TGG 0.564939 3:-59500566 None:intergenic
GCCTTGGATTGATAGGCGTA+CGG 0.566546 3:+59497936 MsG0380014756.01.T01:CDS
TTAGGCCCAATAATCCCATC+CGG 0.569027 3:-59497856 None:intergenic
CCTAACAAAGAGAGATGCCT+GGG 0.569705 3:+59499402 MsG0380014756.01.T01:CDS
CTTCTCGAAGGTACCAGCCC+AGG 0.585743 3:-59499419 None:intergenic
ATGCAGAAGATGCAGTGAAG+AGG 0.595115 3:+59500467 MsG0380014756.01.T01:CDS
GAAACTCTGCTGGTAAGGGA+AGG 0.611765 3:-59500556 None:intergenic
TAAATGAAAATTCTTTACTG+TGG 0.618085 3:-59499368 None:intergenic
AATGTAAAAGTACTTCTCGA+AGG 0.621722 3:-59499431 None:intergenic
TTATGATCATGTTCCTACGC+CGG 0.624066 3:+59497816 MsG0380014756.01.T01:CDS
TGCAGTGATCATGAACCGGA+TGG 0.638936 3:+59499304 MsG0380014756.01.T01:intron
AAATATCGGGAAAAGTATGA+CGG 0.640015 3:+59500426 MsG0380014756.01.T01:CDS
ACCGTACGCCTATCAATCCA+AGG 0.643065 3:-59497937 None:intergenic
GGAACACCAACAACCGGCGT+AGG 0.651108 3:-59497829 None:intergenic
CAGCTAGCATCTCAGCTCAA+CGG 0.652491 3:+59500379 MsG0380014756.01.T01:CDS
TTACGTATGATGAACATGGT+GGG 0.674961 3:+59497791 None:intergenic
ACTCTGCTATTGTCACAATG+AGG 0.691650 3:+59500533 MsG0380014756.01.T01:CDS
ATTACGTATGATGAACATGG+TGG 0.708371 3:+59497790 None:intergenic
CTTGATTAATCACACCGTGG+TGG 0.712865 3:+59500789 MsG0380014756.01.T01:three_prime_UTR
TTGATTACGTATGATGAACA+TGG 0.716894 3:+59497787 None:intergenic
AAACCTGGACAATCATCACG+AGG 0.748499 3:-59499463 None:intergenic
GGACTTGATTAATCACACCG+TGG 0.755445 3:+59500786 MsG0380014756.01.T01:three_prime_UTR
GATCAAACCTAAATAATACG+GGG 0.759037 3:-59497879 None:intergenic
TTAAGAACAATCAACCACCA+CGG 0.764175 3:-59500803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTTTGTATATATATTT+TGG - Chr3:59500180-59500199 None:intergenic 10.0%
!!! GAAATAATAAAAACAATTTT+TGG - Chr3:59499201-59499220 None:intergenic 10.0%
!! ATAGAATGTTTAGATTTATT+AGG + Chr3:59498413-59498432 MsG0380014756.01.T01:intron 15.0%
!! ATTTAAGAAAGATATACTAA+TGG + Chr3:59500684-59500703 MsG0380014756.01.T01:three_prime_UTR 15.0%
!! ATTTACGAAATTAAAATTCT+TGG - Chr3:59500845-59500864 None:intergenic 15.0%
!! TAAAAAAGATTATTTGGTTA+TGG + Chr3:59500765-59500784 MsG0380014756.01.T01:three_prime_UTR 15.0%
!! TATCTTTCTTAAATATCATA+TGG - Chr3:59500678-59500697 None:intergenic 15.0%
!! TTATGGTAAAAAAGATTATT+TGG + Chr3:59500759-59500778 MsG0380014756.01.T01:three_prime_UTR 15.0%
!! AAAAACTAGTAAATTACTCA+TGG - Chr3:59500976-59500995 None:intergenic 20.0%
!! ACATTTGACTAAATAAATCT+TGG + Chr3:59499507-59499526 MsG0380014756.01.T01:intron 20.0%
!! ATTGGAATTATTATCATAGA+TGG - Chr3:59499982-59500001 None:intergenic 20.0%
!! CAAAAAAATTCAAATACACA+AGG - Chr3:59498570-59498589 None:intergenic 20.0%
!! TAAATGAAAATTCTTTACTG+TGG - Chr3:59499371-59499390 None:intergenic 20.0%
!! TCCAATTATTAATCACAAAA+GGG + Chr3:59500153-59500172 MsG0380014756.01.T01:intron 20.0%
!!! AAAACAATTTTTGGTTAGTA+AGG - Chr3:59499192-59499211 None:intergenic 20.0%
!!! AGAGAATGTTACTTTTATTA+GGG - Chr3:59499578-59499597 None:intergenic 20.0%
!!! TTTTATGCTCTTTTGTTTTT+GGG + Chr3:59497980-59497999 MsG0380014756.01.T01:intron 20.0%
!!! TTTTTATGCTCTTTTGTTTT+TGG + Chr3:59497979-59497998 MsG0380014756.01.T01:intron 20.0%
! AAGTCTTTCAGAATTTCAAA+TGG + Chr3:59500348-59500367 MsG0380014756.01.T01:CDS 25.0%
! AATAAATCACTTGCATCAAA+TGG - Chr3:59500230-59500249 None:intergenic 25.0%
! AATCGTTCATATCAGATTAA+CGG - Chr3:59499845-59499864 None:intergenic 25.0%
! ACTAATTTATTCACAACTAG+AGG + Chr3:59500611-59500630 MsG0380014756.01.T01:exon 25.0%
! ATCATGTTAATACATAATGC+TGG - Chr3:59500255-59500274 None:intergenic 25.0%
! CACTGGAAAATATTGAATTA+TGG - Chr3:59498947-59498966 None:intergenic 25.0%
! CCAAAAAATAACTTCAACAA+AGG - Chr3:59498498-59498517 None:intergenic 25.0%
! CTTACGAAAATTAGGAATTT+AGG + Chr3:59498855-59498874 MsG0380014756.01.T01:intron 25.0%
! CTTATTGTTTATTCTGTTCA+TGG + Chr3:59499083-59499102 MsG0380014756.01.T01:intron 25.0%
! GAAAAATCCTCAACTTAAAT+TGG - Chr3:59498250-59498269 None:intergenic 25.0%
! GAATGTTCATATTGAGAATA+TGG - Chr3:59499337-59499356 None:intergenic 25.0%
! GTCCAATTATTAATCACAAA+AGG + Chr3:59500152-59500171 MsG0380014756.01.T01:intron 25.0%
!! ACCCTTTTGTGATTAATAAT+TGG - Chr3:59500157-59500176 None:intergenic 25.0%
!! TAGATTTATTAGGTTGTTAG+AGG + Chr3:59498423-59498442 MsG0380014756.01.T01:intron 25.0%
!! TTTAGAATCTGATGCAAATT+TGG + Chr3:59498330-59498349 MsG0380014756.01.T01:intron 25.0%
!!! CAGAGAATGTTACTTTTATT+AGG - Chr3:59499579-59499598 None:intergenic 25.0%
!!! CCTTTGTTGAAGTTATTTTT+TGG + Chr3:59498495-59498514 MsG0380014756.01.T01:intron 25.0%
!!! CTTATACTGAAAACTGATTT+TGG + Chr3:59498632-59498651 MsG0380014756.01.T01:intron 25.0%
!!! GAGAATGTTACTTTTATTAG+GGG - Chr3:59499577-59499596 None:intergenic 25.0%
!!! TGTTTTTATTATTTCTGTGC+CGG + Chr3:59499206-59499225 MsG0380014756.01.T01:intron 25.0%
AAAAAGGCAATCAAAACAAG+AGG - Chr3:59499240-59499259 None:intergenic 30.0%
AAAACAGTCAACAAGACTAA+AGG - Chr3:59498907-59498926 None:intergenic 30.0%
AACCAACTTATGCTCAAAAA+AGG - Chr3:59499256-59499275 None:intergenic 30.0%
AACCGTTGGATCTTAAATTA+AGG - Chr3:59499908-59499927 None:intergenic 30.0%
AAGTTGCAAAGAAGTAGAAA+CGG - Chr3:59498838-59498857 None:intergenic 30.0%
ACCATAACTAATCAATTGTC+TGG - Chr3:59500746-59500765 None:intergenic 30.0%
ATCTCTCTTTGTTAGGAAAT+TGG - Chr3:59499398-59499417 None:intergenic 30.0%
ATTATCATAGATGGTAGCTT+GGG - Chr3:59499973-59499992 None:intergenic 30.0%
ATTGAATTATGGCATGTCTT+GGG - Chr3:59498936-59498955 None:intergenic 30.0%
CCGATCAAACCTAAATAATA+CGG - Chr3:59497884-59497903 None:intergenic 30.0%
CGATCAAACCTAAATAATAC+GGG - Chr3:59497883-59497902 None:intergenic 30.0%
CTCAATTCCTATCCAAATAT+CGG + Chr3:59500412-59500431 MsG0380014756.01.T01:CDS 30.0%
CTCTATCTCAAAAGTTAGTT+TGG + Chr3:59500108-59500127 MsG0380014756.01.T01:intron 30.0%
CTGAAGAACATTACTTACTT+AGG - Chr3:59498975-59498994 None:intergenic 30.0%
CTGAAGTGAAGATTAATCTA+AGG + Chr3:59500302-59500321 MsG0380014756.01.T01:CDS 30.0%
CTTAGATTAATCTTCACTTC+AGG - Chr3:59500304-59500323 None:intergenic 30.0%
CTTTGCAACTTACGAAAATT+AGG + Chr3:59498847-59498866 MsG0380014756.01.T01:intron 30.0%
GAAAAATCATCTATTCAGTC+TGG + Chr3:59499734-59499753 MsG0380014756.01.T01:intron 30.0%
GATCAAACCTAAATAATACG+GGG - Chr3:59497882-59497901 None:intergenic 30.0%
GCAGTTAGTAAACTATATAC+AGG - Chr3:59500058-59500077 None:intergenic 30.0%
GTGATTAATAATTGGACCAT+TGG - Chr3:59500149-59500168 None:intergenic 30.0%
TAATGTTCTTCAGTGTTCAT+TGG + Chr3:59498982-59499001 MsG0380014756.01.T01:intron 30.0%
TAGAGAATTACAGTGAAATG+CGG + Chr3:59498073-59498092 MsG0380014756.01.T01:intron 30.0%
TATTATCATAGATGGTAGCT+TGG - Chr3:59499974-59499993 None:intergenic 30.0%
TATTGAATTATGGCATGTCT+TGG - Chr3:59498937-59498956 None:intergenic 30.0%
TCAAATTCACTCAAAACTAG+AGG - Chr3:59498703-59498722 None:intergenic 30.0%
TCAACGAGAACTATGATATT+CGG - Chr3:59499679-59499698 None:intergenic 30.0%
TCAATTCCTATCCAAATATC+GGG + Chr3:59500413-59500432 MsG0380014756.01.T01:CDS 30.0%
TTCATTTGTAGTCTCTAGTT+TGG + Chr3:59499550-59499569 MsG0380014756.01.T01:intron 30.0%
TTGAGTGAAACGTAATAAAC+AGG + Chr3:59498719-59498738 MsG0380014756.01.T01:intron 30.0%
TTTAGACAGGTTATGGAATT+AGG + Chr3:59498785-59498804 MsG0380014756.01.T01:intron 30.0%
! AAATATCGGGAAAAGTATGA+CGG + Chr3:59500426-59500445 MsG0380014756.01.T01:CDS 30.0%
! AAGATTAATCTAAGGCCATT+TGG + Chr3:59500310-59500329 MsG0380014756.01.T01:CDS 30.0%
! ACCAGACAATTGATTAGTTA+TGG + Chr3:59500742-59500761 MsG0380014756.01.T01:three_prime_UTR 30.0%
! ATTATTTAGGTTTGATCGGT+TGG + Chr3:59497885-59497904 MsG0380014756.01.T01:CDS 30.0%
! CAGTATTTGATGACTTTATG+TGG + Chr3:59498461-59498480 MsG0380014756.01.T01:intron 30.0%
! CCGTATTATTTAGGTTTGAT+CGG + Chr3:59497881-59497900 MsG0380014756.01.T01:CDS 30.0%
! CTTGTTCTTTTACTCTTACT+GGG + Chr3:59499700-59499719 MsG0380014756.01.T01:intron 30.0%
! GAAAGACTTGAATCTTCTTT+TGG - Chr3:59500337-59500356 None:intergenic 30.0%
! GAATTATGTTAGCGAGATTT+TGG + Chr3:59498281-59498300 MsG0380014756.01.T01:intron 30.0%
! GACCTTAATTTAAGATCCAA+CGG + Chr3:59499903-59499922 MsG0380014756.01.T01:intron 30.0%
! TATACTGAGTTGAAAGAAAG+TGG + Chr3:59498758-59498777 MsG0380014756.01.T01:intron 30.0%
! TCTTGTTCTTTTACTCTTAC+TGG + Chr3:59499699-59499718 MsG0380014756.01.T01:intron 30.0%
! TTACATGCAGTTTTCAATCT+CGG + Chr3:59499819-59499838 MsG0380014756.01.T01:intron 30.0%
! TTATTTAGGTTTGATCGGTT+GGG + Chr3:59497886-59497905 MsG0380014756.01.T01:CDS 30.0%
! TTTATTAGGTTGTTAGAGGA+TGG + Chr3:59498427-59498446 MsG0380014756.01.T01:intron 30.0%
!! AATGTAAAAGTACTTCTCGA+AGG - Chr3:59499434-59499453 None:intergenic 30.0%
!!! ACTGTTTTGTTTGAGAAGAT+GGG - Chr3:59500919-59500938 None:intergenic 30.0%
!!! GAGGATTTTTCTGTTGTTTT+TGG + Chr3:59498259-59498278 MsG0380014756.01.T01:intron 30.0%
!!! TACTGTTTTGTTTGAGAAGA+TGG - Chr3:59500920-59500939 None:intergenic 30.0%
!!! TTTTGAGATAGAGACAGAAA+TGG - Chr3:59500101-59500120 None:intergenic 30.0%
AAAACAAGAGGCCATAAAAC+CGG - Chr3:59499228-59499247 None:intergenic 35.0%
AAATTTCTATGACTGCACTC+AGG - Chr3:59500035-59500054 None:intergenic 35.0%
AACCTAAATAATACGGGGTT+AGG - Chr3:59497877-59497896 None:intergenic 35.0%
AGAAAGTGGCTTATTTAGAC+AGG + Chr3:59498772-59498791 MsG0380014756.01.T01:intron 35.0%
AGTAAGATTCCAACTGCTTT+CGG - Chr3:59500594-59500613 None:intergenic 35.0%
ATGCAGAAACAACTTCATAC+CGG - Chr3:59499008-59499027 None:intergenic 35.0%
GAAGTATACTGAAAAGCCAA+TGG + Chr3:59500130-59500149 MsG0380014756.01.T01:intron 35.0%
TATACTTCAACCAAGTCTAG+AGG - Chr3:59498370-59498389 None:intergenic 35.0%
TCATATTGAGAATATGGCGT+TGG - Chr3:59499331-59499350 None:intergenic 35.0%
TCATTCTCAGTAACTGTGTT+TGG + Chr3:59499149-59499168 MsG0380014756.01.T01:intron 35.0%
TGAAAATTCTTTACTGTGGC+AGG - Chr3:59499367-59499386 None:intergenic 35.0%
TGGCTTATTTAGACAGGTTA+TGG + Chr3:59498778-59498797 MsG0380014756.01.T01:intron 35.0%
TTAAGAACAATCAACCACCA+CGG - Chr3:59500806-59500825 None:intergenic 35.0%
TTGAATTATGGCATGTCTTG+GGG - Chr3:59498935-59498954 None:intergenic 35.0%
! ACTTTTCCCGATATTTGGAT+AGG - Chr3:59500422-59500441 None:intergenic 35.0%
! GAATCTTCTTTTGGTCCAAA+TGG - Chr3:59500328-59500347 None:intergenic 35.0%
! GACTTGGTTGAAGTATACTT+TGG + Chr3:59498373-59498392 MsG0380014756.01.T01:intron 35.0%
! GTCATACTTTTCCCGATATT+TGG - Chr3:59500427-59500446 None:intergenic 35.0%
!! GGAAGATCCAATTTAAGTTG+AGG + Chr3:59498240-59498259 MsG0380014756.01.T01:intron 35.0%
!! TTCATTGCCAACATTGACTT+CGG + Chr3:59498218-59498237 MsG0380014756.01.T01:intron 35.0%
!!! TGCCTTTTTTGAGCATAAGT+TGG + Chr3:59499251-59499270 MsG0380014756.01.T01:intron 35.0%
!!! TTATTTCTGTGCCGGTTTTA+TGG + Chr3:59499214-59499233 MsG0380014756.01.T01:intron 35.0%
AACAGAAACTCTGCTGGTAA+GGG - Chr3:59500563-59500582 None:intergenic 40.0%
AAGCCAAGGATCAAAGCTTA+TGG - Chr3:59498154-59498173 None:intergenic 40.0%
AATTACAGTGAAATGCGGCT+GGG + Chr3:59498078-59498097 MsG0380014756.01.T01:intron 40.0%
ACTCTGCTATTGTCACAATG+AGG + Chr3:59500533-59500552 MsG0380014756.01.T01:CDS 40.0%
AGAAGAAGTAGATGCAAACC+TGG - Chr3:59499481-59499500 None:intergenic 40.0%
ATCATCTATTCAGTCTGGTC+TGG + Chr3:59499739-59499758 MsG0380014756.01.T01:intron 40.0%
CAAGGCGAAATGAGAAAAGT+TGG - Chr3:59497922-59497941 None:intergenic 40.0%
CAATGAACTGAACAAAACCG+TGG - Chr3:59498205-59498224 None:intergenic 40.0%
CTCAGTAACTGTGTTTGGAT+GGG + Chr3:59499154-59499173 MsG0380014756.01.T01:intron 40.0%
GACTAGAGTGGTGTCTATAT+TGG - Chr3:59500000-59500019 None:intergenic 40.0%
GTAAGATTCCAACTGCTTTC+GGG - Chr3:59500593-59500612 None:intergenic 40.0%
TCATTTCGCCTTGGATTGAT+AGG + Chr3:59497929-59497948 MsG0380014756.01.T01:CDS 40.0%
TCTCAGTAACTGTGTTTGGA+TGG + Chr3:59499153-59499172 MsG0380014756.01.T01:intron 40.0%
TGAATTATGGCATGTCTTGG+GGG - Chr3:59498934-59498953 None:intergenic 40.0%
TGAGATCGAAATCTGCATGA+TGG + Chr3:59499927-59499946 MsG0380014756.01.T01:intron 40.0%
TGCAACAACAATCTAAGCCA+AGG - Chr3:59498168-59498187 None:intergenic 40.0%
TGTTGTTGTACCTCTAGACT+TGG + Chr3:59498357-59498376 MsG0380014756.01.T01:intron 40.0%
TTATGATCATGTTCCTACGC+CGG + Chr3:59497816-59497835 MsG0380014756.01.T01:CDS 40.0%
TTCTTGCAGTGATCATGAAC+CGG + Chr3:59499300-59499319 MsG0380014756.01.T01:intron 40.0%
! ACACCATAAGCTTTGATCCT+TGG + Chr3:59498148-59498167 MsG0380014756.01.T01:intron 40.0%
! CAACTTTTCTCATTTCGCCT+TGG + Chr3:59497920-59497939 MsG0380014756.01.T01:CDS 40.0%
! TTGGCTTAGATTGTTGTTGC+AGG + Chr3:59498167-59498186 MsG0380014756.01.T01:intron 40.0%
!! TACTTACTTAGGTTGAGCAC+TGG - Chr3:59498964-59498983 None:intergenic 40.0%
!! TCATTGCCAACATTGACTTC+GGG + Chr3:59498219-59498238 MsG0380014756.01.T01:intron 40.0%
!!! GCAGGCTTATTTTGAAACCA+CGG + Chr3:59498185-59498204 MsG0380014756.01.T01:intron 40.0%
!!! GTTTTGTTTGAGAAGATGGG+TGG - Chr3:59500916-59500935 None:intergenic 40.0%
AAACCTGGACAATCATCACG+AGG - Chr3:59499466-59499485 None:intergenic 45.0%
ACTGCAATGAATCCAGATCC+TGG - Chr3:59499785-59499804 None:intergenic 45.0%
ATGCAGAAGATGCAGTGAAG+AGG + Chr3:59500467-59500486 MsG0380014756.01.T01:CDS 45.0%
CAACAGAAACTCTGCTGGTA+AGG - Chr3:59500564-59500583 None:intergenic 45.0%
CAGATTTCGATCTCAACCGT+TGG - Chr3:59499922-59499941 None:intergenic 45.0%
CCAATAATCCCATCCGGATT+CGG - Chr3:59497853-59497872 None:intergenic 45.0%
CCTAACAAAGAGAGATGCCT+GGG + Chr3:59499402-59499421 MsG0380014756.01.T01:CDS 45.0%
CGAATCCGGATGGGATTATT+GGG + Chr3:59497851-59497870 MsG0380014756.01.T01:CDS 45.0%
CTTACCAGCAGAGTTTCTGT+TGG + Chr3:59500562-59500581 MsG0380014756.01.T01:CDS 45.0%
CTTGATTAATCACACCGTGG+TGG + Chr3:59500789-59500808 MsG0380014756.01.T01:three_prime_UTR 45.0%
GAATTACAGTGAAATGCGGC+TGG + Chr3:59498077-59498096 MsG0380014756.01.T01:intron 45.0%
GAATTATGGCATGTCTTGGG+GGG - Chr3:59498933-59498952 None:intergenic 45.0%
GAGGTTTCTTGAAGCAGGAA+AGG + Chr3:59500486-59500505 MsG0380014756.01.T01:CDS 45.0%
GATCTTCCCGAAGTCAATGT+TGG - Chr3:59498228-59498247 None:intergenic 45.0%
GGACTTGATTAATCACACCG+TGG + Chr3:59500786-59500805 MsG0380014756.01.T01:three_prime_UTR 45.0%
GGCCTAACCCCGTATTATTT+AGG + Chr3:59497872-59497891 MsG0380014756.01.T01:CDS 45.0%
GGTTAGTAAGGCACAGCTTA+TGG - Chr3:59499180-59499199 None:intergenic 45.0%
GTGAAGAGGTTTCTTGAAGC+AGG + Chr3:59500481-59500500 MsG0380014756.01.T01:CDS 45.0%
GTTCTTCAGTGTTCATTGGC+CGG + Chr3:59498986-59499005 MsG0380014756.01.T01:intron 45.0%
TCCTAACAAAGAGAGATGCC+TGG + Chr3:59499401-59499420 MsG0380014756.01.T01:CDS 45.0%
TCTATGACTGCACTCAGGTA+TGG - Chr3:59500030-59500049 None:intergenic 45.0%
TTAGGCCCAATAATCCCATC+CGG - Chr3:59497859-59497878 None:intergenic 45.0%
! CATGAGTGTTGCACTTGATC+TGG + Chr3:59498528-59498547 MsG0380014756.01.T01:intron 45.0%
! TATGGCTTCTTGGACTAGAG+TGG - Chr3:59500012-59500031 None:intergenic 45.0%
!! AATATTGATAAAAATATATT+TGG - Chr3:59499606-59499625 None:intergenic 5.0%
!!! TATATTTTTATCAATATTAT+AGG + Chr3:59499608-59499627 MsG0380014756.01.T01:intron 5.0%
AATCCAGATCCTGGTAGCTC+TGG - Chr3:59499776-59499795 None:intergenic 50.0%
ACCAATAGACCAGAGCTACC+AGG + Chr3:59499764-59499783 MsG0380014756.01.T01:intron 50.0%
ACCAGCAGAGTTTCTGTTGG+AGG + Chr3:59500565-59500584 MsG0380014756.01.T01:CDS 50.0%
ACCGTACGCCTATCAATCCA+AGG - Chr3:59497940-59497959 None:intergenic 50.0%
ACCTCCAACAGAAACTCTGC+TGG - Chr3:59500569-59500588 None:intergenic 50.0%
ACTCCTCGTGATGATTGTCC+AGG + Chr3:59499460-59499479 MsG0380014756.01.T01:CDS 50.0%
CAGCTAGCATCTCAGCTCAA+CGG + Chr3:59500379-59500398 MsG0380014756.01.T01:CDS 50.0%
CCCAGGCATCTCTCTTTGTT+AGG - Chr3:59499405-59499424 None:intergenic 50.0%
CCGAATCCGGATGGGATTAT+TGG + Chr3:59497850-59497869 MsG0380014756.01.T01:CDS 50.0%
GAAACTCTGCTGGTAAGGGA+AGG - Chr3:59500559-59500578 None:intergenic 50.0%
GCCTTGGATTGATAGGCGTA+CGG + Chr3:59497936-59497955 MsG0380014756.01.T01:CDS 50.0%
GGAAAGGCTGCTCTTAAAGC+TGG + Chr3:59500502-59500521 MsG0380014756.01.T01:CDS 50.0%
GGATTCGGAACACCAACAAC+CGG - Chr3:59497838-59497857 None:intergenic 50.0%
TGCACTCAGGTATGGCTTCT+TGG - Chr3:59500022-59500041 None:intergenic 50.0%
TGCAGTGATCATGAACCGGA+TGG + Chr3:59499304-59499323 MsG0380014756.01.T01:intron 50.0%
! GAATATGGCGTTGGACCATC+CGG - Chr3:59499322-59499341 None:intergenic 50.0%
! GGTTGTTGGTGTTCCGAATC+CGG + Chr3:59497837-59497856 MsG0380014756.01.T01:CDS 50.0%
! TTGGTGTTCCGAATCCGGAT+GGG + Chr3:59497842-59497861 MsG0380014756.01.T01:CDS 50.0%
!! TCCTGGTAGCTCTGGTCTAT+TGG - Chr3:59499768-59499787 None:intergenic 50.0%
ACAAAGAGAGATGCCTGGGC+TGG + Chr3:59499406-59499425 MsG0380014756.01.T01:CDS 55.0%
AGACCAGAGCTACCAGGATC+TGG + Chr3:59499770-59499789 MsG0380014756.01.T01:intron 55.0%
CGTTGAGCTGAGATGCTAGC+TGG - Chr3:59500381-59500400 None:intergenic 55.0%
TGGAGGTTCCCGAAAGCAGT+TGG + Chr3:59500582-59500601 MsG0380014756.01.T01:CDS 55.0%
TTATGGCATGTCTTGGGGGG+AGG - Chr3:59498930-59498949 None:intergenic 55.0%
! CATGTTCCTACGCCGGTTGT+TGG + Chr3:59497823-59497842 MsG0380014756.01.T01:CDS 55.0%
! GTTGGTGTTCCGAATCCGGA+TGG + Chr3:59497841-59497860 MsG0380014756.01.T01:CDS 55.0%
GGAACACCAACAACCGGCGT+AGG - Chr3:59497832-59497851 None:intergenic 60.0%
!! CTTCTCGAAGGTACCAGCCC+AGG - Chr3:59499422-59499441 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 59497797 59501007 59497797 ID=MsG0380014756.01;Name=MsG0380014756.01
Chr3 mRNA 59497797 59501007 59497797 ID=MsG0380014756.01.T01;Parent=MsG0380014756.01;Name=MsG0380014756.01.T01;_AED=0.24;_eAED=0.24;_QI=0|1|1|1|1|1|3|392|218
Chr3 exon 59497797 59497957 59497797 ID=MsG0380014756.01.T01:exon:19138;Parent=MsG0380014756.01.T01
Chr3 exon 59499309 59499481 59499309 ID=MsG0380014756.01.T01:exon:19139;Parent=MsG0380014756.01.T01
Chr3 exon 59500293 59501007 59500293 ID=MsG0380014756.01.T01:exon:19140;Parent=MsG0380014756.01.T01
Chr3 CDS 59497797 59497957 59497797 ID=MsG0380014756.01.T01:cds;Parent=MsG0380014756.01.T01
Chr3 CDS 59499309 59499481 59499309 ID=MsG0380014756.01.T01:cds;Parent=MsG0380014756.01.T01
Chr3 CDS 59500293 59500615 59500293 ID=MsG0380014756.01.T01:cds;Parent=MsG0380014756.01.T01
Chr3 three_prime_UTR 59500616 59501007 59500616 ID=MsG0380014756.01.T01:three_prime_utr;Parent=MsG0380014756.01.T01
Gene Sequence

>MsG0380014756.01.T01

ATGATGAACATGGTGGGTTTTATGATCATGTTCCTACGCCGGTTGTTGGTGTTCCGAATCCGGATGGGATTATTGGGCCTAACCCCGTATTATTTAGGTTTGATCGGTTGGGTGTTCGTGTTCCAACTTTTCTCATTTCGCCTTGGATTGATAGGCGTACGTGATCATGAACCGGATGGTCCAACGCCATATTCTCAATATGAACATTCATCTATTCCTGCCACAGTAAAGAATTTTCATTTAAAATCCAATTTCCTAACAAAGAGAGATGCCTGGGCTGGTACCTTCGAGAAGTACTTTTACATTCGAGATACTCCTCGTGATGATTGTCCAGAAACACTTCCTGAAGTGAAGATTAATCTAAGGCCATTTGGACCAAAAGAAGATTCAAGTCTTTCAGAATTTCAAATGGAACTGATCCAGCTAGCATCTCAGCTCAACGGCGATTACGTACTCAATTCCTATCCAAATATCGGGAAAAGTATGACGGTGAAAGAAGCAAACAGATATGCAGAAGATGCAGTGAAGAGGTTTCTTGAAGCAGGAAAGGCTGCTCTTAAAGCTGGTGCTAATGACTCTGCTATTGTCACAATGAGGCCTTCCCTTACCAGCAGAGTTTCTGTTGGAGGTTCCCGAAAGCAGTTGGAATCTTACTAA
Protein sequence

>MsG0380014756.01.T01

MMNMVGFMIMFLRRLLVFRIRMGLLGLTPYYLGLIGWVFVFQLFSFRLGLIGVRDHEPDGPTPYSQYEHSSIPATVKNFHLKSNFLTKRDAWAGTFEKYFYIRDTPRDDCPETLPEVKINLRPFGPKEDSSLSEFQMELIQLASQLNGDYVLNSYPNIGKSMTVKEANRYAEDAVKRFLEAGKAALKAGANDSAIVTMRPSLTSRVSVGGSRKQLESY*