AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020077.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020077.01.T01 MTR_0017s0100 98.374 369 6 0 1 369 1 369 0.0 757
MsG0480020077.01.T01 MTR_4g038440 87.534 369 46 0 1 369 1 369 0.0 684
MsG0480020077.01.T01 MTR_0079s0070 86.567 335 45 0 35 369 1 335 0.0 617
MsG0480020077.01.T01 MTR_4g038440 86.667 270 36 0 1 270 1 270 2.41e-177 493
MsG0480020077.01.T01 MTR_3g083620 41.056 341 188 6 31 366 27 359 1.37e-87 269
MsG0480020077.01.T01 MTR_5g074600 41.595 351 193 8 25 368 14 359 5.45e-79 246
MsG0480020077.01.T01 MTR_5g074680 38.968 349 203 7 25 367 15 359 1.52e-75 238
MsG0480020077.01.T01 MTR_7g118300 39.178 365 202 10 15 367 18 374 8.07e-74 234
MsG0480020077.01.T01 MTR_5g074580 37.569 362 211 7 18 368 3 360 1.50e-70 225
MsG0480020077.01.T01 MTR_8g024160 44.040 302 147 10 64 349 14 309 1.55e-70 224
MsG0480020077.01.T01 MTR_3g092900 37.798 336 187 11 44 367 36 361 2.49e-70 224
MsG0480020077.01.T01 MTR_7g118320 36.628 344 195 12 22 349 7 343 6.02e-70 223
MsG0480020077.01.T01 MTR_5g098170 36.875 320 188 8 44 354 35 349 1.80e-65 212
MsG0480020077.01.T01 MTR_1g076940 36.490 359 212 9 20 368 9 361 4.71e-65 211
MsG0480020077.01.T01 MTR_8g068750 37.037 351 201 11 20 358 27 369 2.74e-64 209
MsG0480020077.01.T01 MTR_7g014510 34.483 377 218 9 1 368 1 357 3.71e-64 208
MsG0480020077.01.T01 MTR_5g074610 36.103 349 186 8 25 368 10 326 1.63e-62 203
MsG0480020077.01.T01 MTR_5g074540 35.876 354 191 7 25 368 14 341 3.18e-62 203
MsG0480020077.01.T01 MTR_4g079160 34.746 354 210 7 25 368 13 355 1.60e-61 201
MsG0480020077.01.T01 MTR_7g014570 33.957 374 219 9 1 368 1 352 3.79e-60 198
MsG0480020077.01.T01 MTR_0591s0010 34.247 365 213 13 5 349 1 358 4.99e-59 196
MsG0480020077.01.T01 MTR_7g024500 34.104 346 216 7 23 365 11 347 6.02e-59 194
MsG0480020077.01.T01 MTR_7g024520 35.191 341 209 7 28 365 16 347 1.09e-58 194
MsG0480020077.01.T01 MTR_6g078850 34.891 321 190 10 42 349 50 364 8.55e-58 196
MsG0480020077.01.T01 MTR_8g068870 34.311 341 204 11 20 349 13 344 1.69e-57 191
MsG0480020077.01.T01 MTR_4g088200 32.692 364 233 8 13 368 2 361 2.74e-57 191
MsG0480020077.01.T01 MTR_8g068690 33.913 345 208 10 20 353 26 361 3.05e-57 191
MsG0480020077.01.T01 MTR_4g088345 33.239 352 222 7 23 368 12 356 3.48e-56 187
MsG0480020077.01.T01 MTR_4g033150 33.973 365 227 8 14 368 3 363 8.78e-56 187
MsG0480020077.01.T01 MTR_3g021440 35.625 320 192 10 44 355 43 356 3.52e-55 185
MsG0480020077.01.T01 MTR_4g088340 33.923 339 213 7 35 368 1 333 1.78e-54 182
MsG0480020077.01.T01 MTR_4g033015 33.983 359 223 8 20 368 9 363 4.66e-53 179
MsG0480020077.01.T01 MTR_4g088190 34.332 367 226 8 13 368 2 364 1.69e-52 178
MsG0480020077.01.T01 MTR_4g033200 33.705 359 224 8 20 368 9 363 2.36e-52 178
MsG0480020077.01.T01 MTR_7g012040 33.731 335 204 12 44 367 40 367 1.26e-51 176
MsG0480020077.01.T01 MTR_3g096050 32.865 356 226 9 16 365 7 355 2.48e-51 175
MsG0480020077.01.T01 MTR_1g036510 33.746 323 196 10 44 354 52 368 3.31e-51 175
MsG0480020077.01.T01 MTR_2g055940 35.119 336 198 13 44 367 35 362 3.62e-51 175
MsG0480020077.01.T01 MTR_7g012020 33.432 338 204 12 43 367 39 368 6.66e-51 174
MsG0480020077.01.T01 MTR_3g021430 33.125 320 200 9 44 355 30 343 2.65e-50 172
MsG0480020077.01.T01 MTR_1g036460 34.056 323 195 10 44 354 38 354 3.26e-50 172
MsG0480020077.01.T01 MTR_1g036490 32.840 338 207 11 44 367 38 369 5.08e-50 172
MsG0480020077.01.T01 MTR_7g011990 33.851 322 194 11 44 355 41 353 1.21e-49 171
MsG0480020077.01.T01 MTR_7g012090 32.353 340 208 10 44 367 41 374 1.62e-49 171
MsG0480020077.01.T01 MTR_2g072790 33.623 345 218 9 27 365 12 351 1.65e-49 170
MsG0480020077.01.T01 MTR_7g012070 32.941 340 206 10 44 367 41 374 2.87e-49 170
MsG0480020077.01.T01 MTR_1g096310 34.862 327 187 12 44 354 41 357 4.30e-49 169
MsG0480020077.01.T01 MTR_8g068570 32.132 333 178 11 19 336 19 318 7.80e-48 165
MsG0480020077.01.T01 MTR_7g011900 33.230 322 197 10 44 354 41 355 1.30e-47 166
MsG0480020077.01.T01 MTR_4g033170 32.231 363 230 8 14 368 3 357 3.08e-47 164
MsG0480020077.01.T01 MTR_8g068730 31.335 367 189 11 5 349 1 326 1.39e-45 159
MsG0480020077.01.T01 MTR_4g033085 31.667 360 236 7 14 368 3 357 6.41e-44 155
MsG0480020077.01.T01 MTR_3g096070 30.423 355 213 9 16 365 7 332 1.28e-42 151
MsG0480020077.01.T01 MTR_8g068690 31.818 264 162 8 20 273 26 281 3.90e-37 135
MsG0480020077.01.T01 MTR_8g068740 32.014 278 133 8 20 284 27 261 4.07e-35 130
MsG0480020077.01.T01 MTR_3g096050 32.946 258 163 6 17 270 8 259 2.85e-34 127
MsG0480020077.01.T01 MTR_8g068600 33.476 233 140 7 49 271 27 254 7.02e-34 127
MsG0480020077.01.T01 MTR_1g050220 28.916 332 170 12 44 363 21 298 7.61e-33 124
MsG0480020077.01.T01 MTR_7g012020 34.177 237 143 7 43 270 39 271 7.13e-32 122
MsG0480020077.01.T01 MTR_8g068620 47.706 109 56 1 162 270 3 110 3.41e-29 109
MsG0480020077.01.T01 MTR_1g076930 32.051 234 150 6 42 270 8 237 7.00e-29 112
MsG0480020077.01.T01 MTR_1g036510 31.646 237 149 6 44 270 52 285 3.19e-28 112
MsG0480020077.01.T01 MTR_4g025570 44.792 96 53 0 272 367 122 217 1.86e-25 102
MsG0480020077.01.T01 MTR_0794s0020 29.200 250 167 5 14 256 3 249 1.09e-24 101
MsG0480020077.01.T01 MTR_7g012020 32.093 215 133 7 44 249 40 250 1.66e-23 98.6
MsG0480020077.01.T01 MTR_1g036510 29.167 216 140 6 44 249 52 264 1.34e-19 87.8
MsG0480020077.01.T01 MTR_8g068760 42.391 92 49 3 270 358 135 225 4.44e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020077.01.T01 AT5G54160 37.500 320 189 6 42 355 34 348 5.10e-74 234
MsG0480020077.01.T01 AT4G35160 37.293 362 206 6 22 367 24 380 2.56e-72 230
MsG0480020077.01.T01 AT1G77520 35.967 367 212 10 17 365 17 378 5.06e-64 209
MsG0480020077.01.T01 AT4G35150 32.303 356 189 6 22 367 10 323 2.15e-59 195
MsG0480020077.01.T01 AT1G51990 32.970 367 220 12 16 368 8 362 4.89e-58 192
MsG0480020077.01.T01 AT1G51990 32.698 367 221 12 16 368 8 362 1.72e-55 186
MsG0480020077.01.T01 AT1G77530 34.465 383 224 13 5 365 1 378 4.95e-55 185
MsG0480020077.01.T01 AT1G63140 35.040 371 218 10 11 365 15 378 5.74e-55 185
MsG0480020077.01.T01 AT1G63140 35.040 371 218 10 11 365 35 398 9.23e-55 185
MsG0480020077.01.T01 AT1G33030 35.329 334 195 12 44 365 23 347 8.47e-53 179
MsG0480020077.01.T01 AT5G53810 34.018 341 203 9 44 367 42 377 2.68e-51 176
MsG0480020077.01.T01 AT3G53140 32.857 350 219 10 27 365 12 356 4.07e-48 167
MsG0480020077.01.T01 AT1G62900 44.776 201 107 3 167 365 4 202 4.24e-48 162
MsG0480020077.01.T01 AT5G37170 36.481 233 141 5 138 365 1 231 1.21e-47 162
MsG0480020077.01.T01 AT1G21130 36.646 322 179 12 44 349 42 354 1.64e-47 166
MsG0480020077.01.T01 AT1G21100 36.335 322 180 11 44 349 42 354 2.98e-47 165
MsG0480020077.01.T01 AT5G37170 32.468 308 177 9 63 365 50 331 2.12e-46 161
MsG0480020077.01.T01 AT1G21120 35.714 322 182 11 44 349 42 354 1.28e-45 160
MsG0480020077.01.T01 AT1G21110 34.451 328 190 11 44 355 42 360 3.65e-45 159
MsG0480020077.01.T01 AT1G21120 35.714 322 182 11 44 349 90 402 4.74e-45 160
MsG0480020077.01.T01 AT1G76790 34.897 341 191 12 45 365 33 362 5.40e-44 156
MsG0480020077.01.T01 AT5G37170 40.110 182 104 4 187 365 4 183 1.96e-42 146
MsG0480020077.01.T01 AT1G33030 34.599 237 138 9 44 270 23 252 4.51e-28 111
MsG0480020077.01.T01 AT1G33030 34.599 237 138 9 44 270 23 252 9.02e-28 110
MsG0480020077.01.T01 AT1G63140 31.752 274 167 8 11 270 35 302 1.61e-27 110
MsG0480020077.01.T01 AT1G21130 34.025 241 137 10 44 270 42 274 5.82e-22 95.1
MsG0480020077.01.T01 AT1G63140 29.644 253 158 8 11 249 35 281 4.94e-18 84.0
MsG0480020077.01.T01 AT1G77530 30.566 265 160 11 5 249 1 261 7.05e-18 83.2

Find 79 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCACCTTCTGCCTTTA+AGG 0.035762 4:+33592892 MsG0480020077.01.T01:CDS
TTAAACAACTCATTGAATTT+TGG 0.113417 4:-33595897 None:intergenic
CATCAACCAATGTTTGAATT+TGG 0.182200 4:-33595989 None:intergenic
ATTTCACTCATAAAGTTAAA+AGG 0.207818 4:-33595795 None:intergenic
TGCTTGGACAAATTGAAATA+TGG 0.256837 4:+33595451 MsG0480020077.01.T01:CDS
TCAACATCCACGCACCTTAA+AGG 0.284260 4:-33592906 None:intergenic
AAAATGGCACTGCTTTCTTT+AGG 0.298524 4:+33595835 MsG0480020077.01.T01:CDS
GCTATGCCAATGTCAGTAAA+TGG 0.312596 4:-33597743 None:intergenic
GTTGATGTTGGTGGTGGTAT+TGG 0.312678 4:+33596005 MsG0480020077.01.T01:CDS
GCTTGACACGTGCATCAAAA+TGG 0.313818 4:+33595703 MsG0480020077.01.T01:CDS
CAACACTAGCCATTTCAAAT+TGG 0.315929 4:-33595872 None:intergenic
GGCAGAAGGTGGAGAGTGAT+TGG 0.355201 4:-33592885 None:intergenic
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4:-33595568 None:intergenic
GTAAATGGTTCATCTCCTTC+TGG 0.366037 4:-33597728 None:intergenic
AACAGGAAAGGTGATAATAT+TGG 0.375818 4:+33597691 MsG0480020077.01.T01:CDS
GTGTTTAGAGCTGTTATTGC+TGG 0.403865 4:+33595948 MsG0480020077.01.T01:CDS
GATTGGAAATGCTTCAATGA+TGG 0.406919 4:-33597891 None:intergenic
AAAGGACAAGCATGCACAAC+TGG 0.416268 4:+33595921 MsG0480020077.01.T01:CDS
TGGTTATGACCAATTTGAAA+TGG 0.426665 4:+33595863 MsG0480020077.01.T01:CDS
GATAATATTGGATCATGTAT+TGG 0.435063 4:+33597703 MsG0480020077.01.T01:CDS
CTTAAAAGTAGAGTGGAATC+AGG 0.438559 4:-33595609 None:intergenic
ATGAGTGAAATTGTAAAAGA+AGG 0.441259 4:+33595807 MsG0480020077.01.T01:CDS
TTAAAAGGGTTCATATGAGT+TGG 0.444485 4:-33595780 None:intergenic
TTTCACTCATAAAGTTAAAA+GGG 0.448814 4:-33595794 None:intergenic
ACTGCTTTCTTTAGGTGTCA+TGG 0.450664 4:+33595843 MsG0480020077.01.T01:CDS
ATGGGTGATGCCATCATACT+TGG 0.452889 4:-33596111 None:intergenic
TAAAAGGGTTCATATGAGTT+GGG 0.453853 4:-33595779 None:intergenic
GTTATTGCTGGATACAAAGA+TGG 0.468883 4:+33595960 MsG0480020077.01.T01:CDS
GCAAATCAAAATTAATACCT+TGG 0.471241 4:-33596067 None:intergenic
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4:+33597674 MsG0480020077.01.T01:CDS
AGGAAAGGACTGAAGAGAAC+TGG 0.477263 4:+33597804 MsG0480020077.01.T01:CDS
AAAAGTGACATTGGCACCAT+TGG 0.485135 4:+33595740 MsG0480020077.01.T01:CDS
GATGAACCATTTACTGACAT+TGG 0.495764 4:+33597737 MsG0480020077.01.T01:CDS
TGCACACAACTCTGGTGGTA+AGG 0.502617 4:+33597784 MsG0480020077.01.T01:CDS
GAACATGTCTCCTCCAACAT+GGG 0.506646 4:-33596129 None:intergenic
GATGTTGGTGGTGGTATTGG+CGG 0.508464 4:+33596008 MsG0480020077.01.T01:CDS
TTTAAGAGTAATGAGAGTAA+TGG 0.509813 4:+33595626 MsG0480020077.01.T01:CDS
AGATACTTATTCAAAGAGAC+AGG 0.514708 4:+33597827 MsG0480020077.01.T01:CDS
GGTAGTGGATTCTTCATGAC+TGG 0.515619 4:+33597612 MsG0480020077.01.T01:intron
ATTTAACCAAATTCAAACAT+TGG 0.521052 4:+33595983 MsG0480020077.01.T01:CDS
TTCAATGAGTTGTTTAACAA+AGG 0.521127 4:+33595903 MsG0480020077.01.T01:CDS
CTAGGGTGTGAGCAAGGAAG+AGG 0.523226 4:+33595419 MsG0480020077.01.T01:intron
CAAACATTGGTTGATGTTGG+TGG 0.526942 4:+33595996 MsG0480020077.01.T01:CDS
ATTCAAACATTGGTTGATGT+TGG 0.530112 4:+33595993 MsG0480020077.01.T01:CDS
TCTTCAATATCTTTATGCAA+TGG 0.534210 4:-33597643 None:intergenic
TAAAGATATTGAAGAACTGT+AGG 0.535387 4:+33597651 MsG0480020077.01.T01:CDS
TGCTGATGCTATTTACATCA+AGG 0.535867 4:+33596166 MsG0480020077.01.T01:CDS
CGAACATGTCTCCTCCAACA+TGG 0.536309 4:-33596130 None:intergenic
AATTAATACCTTGGATGTGA+GGG 0.541352 4:-33596058 None:intergenic
TCAACGGCACCCAAGTATGA+TGG 0.541751 4:+33596101 MsG0480020077.01.T01:CDS
AAGTAGAGTGGAATCAGGAG+AGG 0.545001 4:-33595604 None:intergenic
GAAGAGGAGGAATCATTGCT+TGG 0.551152 4:+33595435 MsG0480020077.01.T01:CDS
TTTGCCTCATGTTGTTTCAA+CGG 0.559425 4:+33596085 MsG0480020077.01.T01:CDS
AAATTAATACCTTGGATGTG+AGG 0.559777 4:-33596059 None:intergenic
GATGGCATCACCCATGTTGG+AGG 0.561480 4:+33596119 MsG0480020077.01.T01:CDS
ATATTGTTTGCACACAACTC+TGG 0.563913 4:+33597776 MsG0480020077.01.T01:CDS
TATGATGGCATCACCCATGT+TGG 0.578808 4:+33596116 MsG0480020077.01.T01:CDS
ACAAGACACAAAAGTGACAT+TGG 0.586673 4:+33595731 MsG0480020077.01.T01:CDS
GGGTGTGAGCAAGGAAGAGG+AGG 0.586759 4:+33595422 MsG0480020077.01.T01:intron
CATTACTCTTAAAAGTAGAG+TGG 0.588009 4:-33595616 None:intergenic
ATGTAAATAGCATCAGCACT+AGG 0.594614 4:-33596161 None:intergenic
GATATTGAAGAACTGTAGGA+AGG 0.597258 4:+33597655 MsG0480020077.01.T01:CDS
ACATTGGTTGATGTTGGTGG+TGG 0.602342 4:+33595999 MsG0480020077.01.T01:CDS
AGGATAGCGGTTTACACTGA+CGG 0.604044 4:-33595548 None:intergenic
CGCACCTTAAAGGCAGAAGG+TGG 0.612114 4:-33592896 None:intergenic
AGTAGAGTGGAATCAGGAGA+GGG 0.613280 4:-33595603 None:intergenic
AAAGCTTACCCTCACATCCA+AGG 0.615664 4:+33596050 MsG0480020077.01.T01:CDS
ACAACTCTGGTGGTAAGGAA+AGG 0.616165 4:+33597789 MsG0480020077.01.T01:CDS
AAATGACTAGGGTGTGAGCA+AGG 0.619206 4:+33595413 MsG0480020077.01.T01:intron
ACAATTTGAGTTAAGGATAG+CGG 0.620633 4:-33595561 None:intergenic
TTGTTTGCACACAACTCTGG+TGG 0.628395 4:+33597779 MsG0480020077.01.T01:CDS
CCACGCACCTTAAAGGCAGA+AGG 0.632006 4:-33592899 None:intergenic
GAAACCGGCGAAATTCTCTA+CGG 0.639770 4:+33595681 MsG0480020077.01.T01:CDS
CAAGCCGTAGAGAATTTCGC+CGG 0.643000 4:-33595685 None:intergenic
GATCATGTATTGGATCCAGA+AGG 0.647337 4:+33597713 MsG0480020077.01.T01:CDS
TGAGTCTCTAGTAACACCAA+TGG 0.648452 4:-33595756 None:intergenic
TGGGTGATGCCATCATACTT+GGG 0.669553 4:-33596110 None:intergenic
AATACCAGAGAAAACAGGAA+AGG 0.671132 4:+33597679 MsG0480020077.01.T01:CDS
GGTGCCGTTGAAACAACATG+AGG 0.720627 4:-33596089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + Chr4:33593361-33593380 MsG0480020077.01.T01:intron 0.0%
!! TATATATATATATATATATA+TGG + Chr4:33593362-33593381 MsG0480020077.01.T01:intron 0.0%
!!! AATATATAATTTTAAAATAT+TGG - Chr4:33595205-33595224 None:intergenic 0.0%
!! AAGTAATGTATAAATTTAAT+TGG - Chr4:33595356-33595375 None:intergenic 10.0%
!! AATAAAATAGAATTAACAAT+CGG + Chr4:33597390-33597409 MsG0480020077.01.T01:intron 10.0%
!!! CAATTTCTTTTTTTTTTTTT+AGG - Chr4:33595263-33595282 None:intergenic 10.0%
!!! GTTAAAAAATTCTAATTTTT+TGG + Chr4:33594686-33594705 MsG0480020077.01.T01:intron 10.0%
!!! GTTAATTCTATTTTATTATA+GGG - Chr4:33597387-33597406 None:intergenic 10.0%
!!! TACTATATTGATTAATTTAT+TGG + Chr4:33593243-33593262 MsG0480020077.01.T01:intron 10.0%
!!! TGTTAATTCTATTTTATTAT+AGG - Chr4:33597388-33597407 None:intergenic 10.0%
!!! TTCCTTTTTTTTTTTTTTTT+TGG - Chr4:33593192-33593211 None:intergenic 10.0%
!! AAATTATCCATATTAACTAT+TGG - Chr4:33597044-33597063 None:intergenic 15.0%
!! AACAAAACATGAATTAAATA+CGG - Chr4:33594669-33594688 None:intergenic 15.0%
!! AATAGTTAATATGGATAATT+TGG + Chr4:33597043-33597062 MsG0480020077.01.T01:intron 15.0%
!! AATTAGGATTGTTAATTATT+TGG - Chr4:33593012-33593031 None:intergenic 15.0%
!! CACCAAAAAAAAAAAAAAAA+AGG + Chr4:33593187-33593206 MsG0480020077.01.T01:intron 15.0%
!! GAATTAAACATGAATTAAAT+TGG - Chr4:33594472-33594491 None:intergenic 15.0%
!! GTCTAACTATAAATATAAAA+TGG + Chr4:33597532-33597551 MsG0480020077.01.T01:intron 15.0%
!! TACTAAATATACGTTATAAA+TGG + Chr4:33596363-33596382 MsG0480020077.01.T01:intron 15.0%
!! TAGAATTAGTTGAATATTAA+CGG + Chr4:33597510-33597529 MsG0480020077.01.T01:intron 15.0%
!! TATAAACTGTGATTAATAAT+GGG - Chr4:33595394-33595413 None:intergenic 15.0%
!! TTATAAACTGTGATTAATAA+TGG - Chr4:33595395-33595414 None:intergenic 15.0%
!! TTGTTTGAAAAAAATATTAG+AGG + Chr4:33595142-33595161 MsG0480020077.01.T01:intron 15.0%
!!! AAATACGTCTTTTAAATTTT+AGG + Chr4:33596566-33596585 MsG0480020077.01.T01:intron 15.0%
!!! AAGCCTTTATTTTATTTTTT+CGG - Chr4:33597348-33597367 None:intergenic 15.0%
!!! AATGAAATTCACTAATTTTT+GGG - Chr4:33594904-33594923 None:intergenic 15.0%
!!! ACATGATTTGTTTTAAAAAT+AGG + Chr4:33594771-33594790 MsG0480020077.01.T01:intron 15.0%
!!! ATAATTAACAATCCTAATTT+TGG + Chr4:33593013-33593032 MsG0480020077.01.T01:intron 15.0%
!!! CATGATTTGTTTTAAAAATA+GGG + Chr4:33594772-33594791 MsG0480020077.01.T01:intron 15.0%
!!! GAACTCATAATAATTTTATT+GGG - Chr4:33596716-33596735 None:intergenic 15.0%
!!! GTTTTTTTAACTAGTATTTT+GGG + Chr4:33597265-33597284 MsG0480020077.01.T01:intron 15.0%
!!! TAATGAAATTCACTAATTTT+TGG - Chr4:33594905-33594924 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - Chr4:33597020-33597039 None:intergenic 15.0%
!!! TGAACTCATAATAATTTTAT+TGG - Chr4:33596717-33596736 None:intergenic 15.0%
!!! TGTTTTTTTAACTAGTATTT+TGG + Chr4:33597264-33597283 MsG0480020077.01.T01:intron 15.0%
!! AAAAAATATCCAAAAGTTTG+TGG - Chr4:33596655-33596674 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+TGG + Chr4:33597034-33597053 MsG0480020077.01.T01:intron 20.0%
!! AAAGAGAAAAATGTAGTATT+AGG - Chr4:33596832-33596851 None:intergenic 20.0%
!! AAGTTAATAAATACACCTTA+AGG + Chr4:33593487-33593506 MsG0480020077.01.T01:intron 20.0%
!! AATTAAGTTCTCATTGATAA+AGG - Chr4:33595095-33595114 None:intergenic 20.0%
!! ACAAAAGATGATACATTTAT+AGG - Chr4:33595039-33595058 None:intergenic 20.0%
!! ATATATGCATATGAAGAAAA+AGG + Chr4:33593846-33593865 MsG0480020077.01.T01:intron 20.0%
!! ATTATCACTTATGTATCATT+GGG + Chr4:33593751-33593770 MsG0480020077.01.T01:intron 20.0%
!! ATTTAACCAAATTCAAACAT+TGG + Chr4:33595983-33596002 MsG0480020077.01.T01:CDS 20.0%
!! ATTTCACTCATAAAGTTAAA+AGG - Chr4:33595798-33595817 None:intergenic 20.0%
!! TACCCGAAAAAATAAAATAA+AGG + Chr4:33597342-33597361 MsG0480020077.01.T01:intron 20.0%
!! TCTTGAGAATAAAAAAGAAT+TGG - Chr4:33597308-33597327 None:intergenic 20.0%
!! TTAGTGAATTTCATTAAGAT+AGG + Chr4:33594909-33594928 MsG0480020077.01.T01:intron 20.0%
!! TTCTAACAATAAATCTTGAT+TGG + Chr4:33593626-33593645 MsG0480020077.01.T01:intron 20.0%
!! TTTCACTCATAAAGTTAAAA+GGG - Chr4:33595797-33595816 None:intergenic 20.0%
!!! AATATATAAGTTTTGCATTG+AGG - Chr4:33597235-33597254 None:intergenic 20.0%
!!! AATGAATATTTTTGTGTGAA+TGG + Chr4:33597590-33597609 MsG0480020077.01.T01:intron 20.0%
!!! AATTTTGTTTGTTTTGTCAT+GGG - Chr4:33593114-33593133 None:intergenic 20.0%
!!! ACAAAACATAAAGTATTCTA+AGG + Chr4:33594565-33594584 MsG0480020077.01.T01:intron 20.0%
!!! AGCCTTTATTTTATTTTTTC+GGG - Chr4:33597347-33597366 None:intergenic 20.0%
!!! ATAATAATTTTATTGGGTGA+TGG - Chr4:33596710-33596729 None:intergenic 20.0%
!!! ATGAATATTTTTGTGTGAAT+GGG + Chr4:33597591-33597610 MsG0480020077.01.T01:intron 20.0%
!!! TAAACAACTCATTGAATTTT+GGG - Chr4:33595899-33595918 None:intergenic 20.0%
!!! TAATTTTGTTTGTTTTGTCA+TGG - Chr4:33593115-33593134 None:intergenic 20.0%
!!! TGGTGATTGTAAATTTTATA+GGG + Chr4:33594803-33594822 MsG0480020077.01.T01:intron 20.0%
!!! TTAAACAACTCATTGAATTT+TGG - Chr4:33595900-33595919 None:intergenic 20.0%
! AAAAAAACGAACGTAAAAAG+TGG + Chr4:33595165-33595184 MsG0480020077.01.T01:intron 25.0%
! AATGAGAGTCAAATACATAT+AGG - Chr4:33597183-33597202 None:intergenic 25.0%
! AATGAGTAAAAGAAAGAGAA+TGG - Chr4:33597077-33597096 None:intergenic 25.0%
! AGGATTATAAACTACTTTCA+TGG - Chr4:33595019-33595038 None:intergenic 25.0%
! ATCACAGTTTATAAATGACT+AGG + Chr4:33595401-33595420 MsG0480020077.01.T01:intron 25.0%
! ATGAGTGAAATTGTAAAAGA+AGG + Chr4:33595807-33595826 MsG0480020077.01.T01:CDS 25.0%
! ATGTTTAATTCCGTATTCTA+AGG + Chr4:33594481-33594500 MsG0480020077.01.T01:intron 25.0%
! CATTGCATTATTCCTTAATT+AGG - Chr4:33593163-33593182 None:intergenic 25.0%
! CTATTGAGATACTAATACAA+TGG - Chr4:33593880-33593899 None:intergenic 25.0%
! CTGACAATATGTTTATAAGT+GGG + Chr4:33594343-33594362 MsG0480020077.01.T01:intron 25.0%
! GAATAATGCAATGTACAATT+TGG + Chr4:33593209-33593228 MsG0480020077.01.T01:intron 25.0%
! GATAATATTGGATCATGTAT+TGG + Chr4:33597703-33597722 MsG0480020077.01.T01:CDS 25.0%
! GATTATCACTTATGTATCAT+TGG + Chr4:33593750-33593769 MsG0480020077.01.T01:intron 25.0%
! GCAAATCAAAATTAATACCT+TGG - Chr4:33596070-33596089 None:intergenic 25.0%
! TAAAGATATTGAAGAACTGT+AGG + Chr4:33597651-33597670 MsG0480020077.01.T01:CDS 25.0%
! TCACAGTTTATAAATGACTA+GGG + Chr4:33595402-33595421 MsG0480020077.01.T01:intron 25.0%
! TCTTCAATATCTTTATGCAA+TGG - Chr4:33597646-33597665 None:intergenic 25.0%
! TGACAATATGTTTATAAGTG+GGG + Chr4:33594344-33594363 MsG0480020077.01.T01:intron 25.0%
! TTAAAAATAGGGATCAAAAG+TGG + Chr4:33594783-33594802 MsG0480020077.01.T01:intron 25.0%
! TTCAATGAGTTGTTTAACAA+AGG + Chr4:33595903-33595922 MsG0480020077.01.T01:CDS 25.0%
! TTTAAGAGTAATGAGAGTAA+TGG + Chr4:33595626-33595645 MsG0480020077.01.T01:CDS 25.0%
!! ACTAAGTCGAATGAAAATTT+TGG + Chr4:33594826-33594845 MsG0480020077.01.T01:intron 25.0%
!! CGATGAATTTTGTCTATTTT+GGG + Chr4:33596440-33596459 MsG0480020077.01.T01:intron 25.0%
!! GTGGTGATTGTAAATTTTAT+AGG + Chr4:33594802-33594821 MsG0480020077.01.T01:intron 25.0%
!! TCGATGAATTTTGTCTATTT+TGG + Chr4:33596439-33596458 MsG0480020077.01.T01:intron 25.0%
!! TTTTTAATCCCTCTATACAA+TGG + Chr4:33595058-33595077 MsG0480020077.01.T01:intron 25.0%
!! TTTTTACCATTTTGTGGATT+TGG - Chr4:33595318-33595337 None:intergenic 25.0%
!! TTTTTATTCTCAAGATGTGA+AGG + Chr4:33597313-33597332 MsG0480020077.01.T01:intron 25.0%
!!! CACACACTAAACATATTTTT+TGG + Chr4:33592956-33592975 MsG0480020077.01.T01:intron 25.0%
!!! CTCTGATTTGTTGAAAATTA+GGG - Chr4:33594413-33594432 None:intergenic 25.0%
!!! CTGAATTTTAGGATTTAAGT+CGG + Chr4:33596511-33596530 MsG0480020077.01.T01:intron 25.0%
!!! TGAATTTTAGGATTTAAGTC+GGG + Chr4:33596512-33596531 MsG0480020077.01.T01:intron 25.0%
!!! TTGTATTCCTTTAAAGTAGA+GGG + Chr4:33595291-33595310 MsG0480020077.01.T01:intron 25.0%
!!! TTTGTATTCCTTTAAAGTAG+AGG + Chr4:33595290-33595309 MsG0480020077.01.T01:intron 25.0%
AAAATCGCAATCAAAATCGA+TGG + Chr4:33596321-33596340 MsG0480020077.01.T01:intron 30.0%
AAAATCGCATTCAAAATCGA+AGG + Chr4:33596256-33596275 MsG0480020077.01.T01:intron 30.0%
AAATATCCAAAAGTTTGTGG+AGG - Chr4:33596652-33596671 None:intergenic 30.0%
AAATTAATACCTTGGATGTG+AGG - Chr4:33596062-33596081 None:intergenic 30.0%
AACAGGAAAGGTGATAATAT+TGG + Chr4:33597691-33597710 MsG0480020077.01.T01:CDS 30.0%
AAGTGATATCCCATCATAAA+TGG + Chr4:33593905-33593924 MsG0480020077.01.T01:intron 30.0%
AATTAAATTGGTGCGTGAAT+AGG - Chr4:33594460-33594479 None:intergenic 30.0%
AATTAATACCTTGGATGTGA+GGG - Chr4:33596061-33596080 None:intergenic 30.0%
ACAATACTAAGGCCAAAATT+AGG - Chr4:33593028-33593047 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + Chr4:33593528-33593547 MsG0480020077.01.T01:intron 30.0%
AGATACTTATTCAAAGAGAC+AGG + Chr4:33597827-33597846 MsG0480020077.01.T01:CDS 30.0%
AGTTTGTATCATGTTCAGTT+TGG + Chr4:33593290-33593309 MsG0480020077.01.T01:intron 30.0%
ATCCACAAAATGGTAAAAAC+TGG + Chr4:33595319-33595338 MsG0480020077.01.T01:intron 30.0%
ATGATCGTATATACTAACCA+AGG + Chr4:33596213-33596232 MsG0480020077.01.T01:intron 30.0%
CATCAACCAATGTTTGAATT+TGG - Chr4:33595992-33596011 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG - Chr4:33595619-33595638 None:intergenic 30.0%
CCACTTATAAACATATTGTC+AGG - Chr4:33594345-33594364 None:intergenic 30.0%
CCTGACAATATGTTTATAAG+TGG + Chr4:33594342-33594361 MsG0480020077.01.T01:intron 30.0%
CGACTTAAATCCTAAAATTC+AGG - Chr4:33596513-33596532 None:intergenic 30.0%
CTAACTCTTCCTTACAAAAT+CGG - Chr4:33594389-33594408 None:intergenic 30.0%
CTTGATGAGAGTTTATAAAG+AGG + Chr4:33593987-33594006 MsG0480020077.01.T01:intron 30.0%
GACAATATGTTTATAAGTGG+GGG + Chr4:33594345-33594364 MsG0480020077.01.T01:intron 30.0%
GCATTCTTTGAACCTAATTA+AGG + Chr4:33593148-33593167 MsG0480020077.01.T01:intron 30.0%
TAAAAGGGTTCATATGAGTT+GGG - Chr4:33595782-33595801 None:intergenic 30.0%
TAACCAAGGTTATCAAAATC+AGG + Chr4:33596227-33596246 MsG0480020077.01.T01:intron 30.0%
TAACTGCAAAAGTTCTTCTA+TGG + Chr4:33593590-33593609 MsG0480020077.01.T01:intron 30.0%
TCCACAAAATGGTAAAAACT+GGG + Chr4:33595320-33595339 MsG0480020077.01.T01:intron 30.0%
TGCTTGGACAAATTGAAATA+TGG + Chr4:33595451-33595470 MsG0480020077.01.T01:CDS 30.0%
TGGTTATGACCAATTTGAAA+TGG + Chr4:33595863-33595882 MsG0480020077.01.T01:CDS 30.0%
TTAAAAGGGTTCATATGAGT+TGG - Chr4:33595783-33595802 None:intergenic 30.0%
TTAATGCATCACATTCACAA+AGG + Chr4:33593728-33593747 MsG0480020077.01.T01:intron 30.0%
TTATAGCAACATACACCTTA+AGG - Chr4:33593505-33593524 None:intergenic 30.0%
! AAATCGAAGGATTTTACTCA+AGG + Chr4:33596269-33596288 MsG0480020077.01.T01:intron 30.0%
! AACTGTGATTAATAATGGGA+TGG - Chr4:33595390-33595409 None:intergenic 30.0%
! AAGAACTTTTGCAGTTAATG+TGG - Chr4:33593587-33593606 None:intergenic 30.0%
! AAGTCGAATGAAAATTTTGG+AGG + Chr4:33594829-33594848 MsG0480020077.01.T01:intron 30.0%
! ACAATTTGAGTTAAGGATAG+CGG - Chr4:33595564-33595583 None:intergenic 30.0%
! AGTCGAATGAAAATTTTGGA+GGG + Chr4:33594830-33594849 MsG0480020077.01.T01:intron 30.0%
! ATTCAAACATTGGTTGATGT+TGG + Chr4:33595993-33596012 MsG0480020077.01.T01:CDS 30.0%
! ATTCTGCACAATTTGAGTTA+AGG - Chr4:33595571-33595590 None:intergenic 30.0%
! GTAAAAGAAGGCACAAAAAA+TGG + Chr4:33595819-33595838 MsG0480020077.01.T01:CDS 30.0%
! GTAGTGTGTAGAGTATTAAT+TGG - Chr4:33596995-33597014 None:intergenic 30.0%
! GTTATAGATAGTTTGAGACA+GGG + Chr4:33596593-33596612 MsG0480020077.01.T01:intron 30.0%
! TGTGTAGAGTATTAATTGGA+TGG - Chr4:33596991-33597010 None:intergenic 30.0%
! TGTTATAGATAGTTTGAGAC+AGG + Chr4:33596592-33596611 MsG0480020077.01.T01:intron 30.0%
! TTATAGATAGTTTGAGACAG+GGG + Chr4:33596594-33596613 MsG0480020077.01.T01:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG - Chr4:33596900-33596919 None:intergenic 30.0%
!! GCTCTGATTTGTTGAAAATT+AGG - Chr4:33594414-33594433 None:intergenic 30.0%
!! TTTAGCTCTTCCTTAGAATA+CGG - Chr4:33594525-33594544 None:intergenic 30.0%
!!! AGTGACATTCATTTTGAAAC+TGG - Chr4:33596926-33596945 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG - Chr4:33597857-33597876 None:intergenic 30.0%
!!! TCTATTTTGGGATTCTACTA+TGG + Chr4:33596452-33596471 MsG0480020077.01.T01:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - Chr4:33597123-33597142 None:intergenic 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG - Chr4:33597856-33597875 None:intergenic 30.0%
AAAATGGCACTGCTTTCTTT+AGG + Chr4:33595835-33595854 MsG0480020077.01.T01:CDS 35.0%
AATACCAGAGAAAACAGGAA+AGG + Chr4:33597679-33597698 MsG0480020077.01.T01:CDS 35.0%
ACAAGACACAAAAGTGACAT+TGG + Chr4:33595731-33595750 MsG0480020077.01.T01:CDS 35.0%
ACTCCCACATAAAAACTAGT+GGG - Chr4:33593445-33593464 None:intergenic 35.0%
AGTGCAGAAAAATCAGAAAC+CGG + Chr4:33595666-33595685 MsG0480020077.01.T01:CDS 35.0%
AGTTGTTCCTCATAATGTTG+TGG - Chr4:33594941-33594960 None:intergenic 35.0%
ATAAGTGGAGCCATTTATGA+TGG - Chr4:33593918-33593937 None:intergenic 35.0%
ATATTGTTTGCACACAACTC+TGG + Chr4:33597776-33597795 MsG0480020077.01.T01:CDS 35.0%
ATGAGCTCTTCCTTAGAATA+CGG - Chr4:33594494-33594513 None:intergenic 35.0%
ATGATACAAACTGAGAAGGA+GGG - Chr4:33593282-33593301 None:intergenic 35.0%
ATGTAAATAGCATCAGCACT+AGG - Chr4:33596164-33596183 None:intergenic 35.0%
ATTTGGTCCCTCTACTTTAA+AGG - Chr4:33595301-33595320 None:intergenic 35.0%
CAAATCCATATTCTGTGAAC+TGG - Chr4:33593091-33593110 None:intergenic 35.0%
CAACACTAGCCATTTCAAAT+TGG - Chr4:33595875-33595894 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + Chr4:33593527-33593546 MsG0480020077.01.T01:intron 35.0%
CGCAATTTAGCACAATACTA+AGG - Chr4:33593039-33593058 None:intergenic 35.0%
CTATGGATTTAAGTCGTTGA+TGG + Chr4:33596469-33596488 MsG0480020077.01.T01:intron 35.0%
CTTAAAAGTAGAGTGGAATC+AGG - Chr4:33595612-33595631 None:intergenic 35.0%
GAACATGATACAAACTGAGA+AGG - Chr4:33593286-33593305 None:intergenic 35.0%
GAGCTTGTGTTTACTCATAT+AGG - Chr4:33597161-33597180 None:intergenic 35.0%
GATATTGAAGAACTGTAGGA+AGG + Chr4:33597655-33597674 MsG0480020077.01.T01:CDS 35.0%
GATGAACCATTTACTGACAT+TGG + Chr4:33597737-33597756 MsG0480020077.01.T01:CDS 35.0%
GATGAGAGTTTATAAAGAGG+AGG + Chr4:33593990-33594009 MsG0480020077.01.T01:intron 35.0%
GATTGGAAATGCTTCAATGA+TGG - Chr4:33597894-33597913 None:intergenic 35.0%
GCAAAAGTTCTTCTATGGAA+GGG + Chr4:33593595-33593614 MsG0480020077.01.T01:intron 35.0%
GTATACTCCACAACATTATG+AGG + Chr4:33594931-33594950 MsG0480020077.01.T01:intron 35.0%
GTATCATGTTCAGTTTGGAT+TGG + Chr4:33593295-33593314 MsG0480020077.01.T01:intron 35.0%
GTTATTGCTGGATACAAAGA+TGG + Chr4:33595960-33595979 MsG0480020077.01.T01:CDS 35.0%
GTTTACCAGTTCACAGAATA+TGG + Chr4:33593083-33593102 MsG0480020077.01.T01:intron 35.0%
TAAGTGGAGCCATTTATGAT+GGG - Chr4:33593917-33593936 None:intergenic 35.0%
TATGAGAAAAGACAGAGGTA+AGG + Chr4:33593061-33593080 MsG0480020077.01.T01:intron 35.0%
TCTTCCTTAGATTGATTACG+TGG - Chr4:33593814-33593833 None:intergenic 35.0%
TGATACCATCTTAGAAATCG+TGG - Chr4:33594063-33594082 None:intergenic 35.0%
TGCAAAAGTTCTTCTATGGA+AGG + Chr4:33593594-33593613 MsG0480020077.01.T01:intron 35.0%
TGTTTACTCATATAGGAGCT+TGG - Chr4:33597154-33597173 None:intergenic 35.0%
! ATTTTTGTGTGAATGGGTAG+TGG + Chr4:33597597-33597616 MsG0480020077.01.T01:intron 35.0%
! CCACTTATGTGGTTTGTATT+GGG + Chr4:33593930-33593949 MsG0480020077.01.T01:intron 35.0%
! CGATTTTGTAAGGAAGAGTT+AGG + Chr4:33594387-33594406 MsG0480020077.01.T01:intron 35.0%
! GTCGCAAAATCCTGAATTTT+AGG + Chr4:33596500-33596519 MsG0480020077.01.T01:intron 35.0%
! TCCACTTATGTGGTTTGTAT+TGG + Chr4:33593929-33593948 MsG0480020077.01.T01:intron 35.0%
! TCCCAGTTTTTACCATTTTG+TGG - Chr4:33595324-33595343 None:intergenic 35.0%
! TGCTGATGCTATTTACATCA+AGG + Chr4:33596166-33596185 MsG0480020077.01.T01:CDS 35.0%
!! AGCCAGAAATTTTGAGAAGT+GGG - Chr4:33597468-33597487 None:intergenic 35.0%
!! AGTCCTGATTTTGATAACCT+TGG - Chr4:33596233-33596252 None:intergenic 35.0%
!! TAGCCAGAAATTTTGAGAAG+TGG - Chr4:33597469-33597488 None:intergenic 35.0%
!! TTTGCCTCATGTTGTTTCAA+CGG + Chr4:33596085-33596104 MsG0480020077.01.T01:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + Chr4:33593439-33593458 MsG0480020077.01.T01:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - Chr4:33593532-33593551 None:intergenic 35.0%
!!! TTTTGCTCTAAAAGCAGTTG+TGG + Chr4:33595500-33595519 MsG0480020077.01.T01:CDS 35.0%
AAAAGTGACATTGGCACCAT+TGG + Chr4:33595740-33595759 MsG0480020077.01.T01:CDS 40.0%
AAATTGGTGCGTGAATAGGT+AGG - Chr4:33594456-33594475 None:intergenic 40.0%
AAGGAGTTTGGGAAACTCTT+CGG + Chr4:33593321-33593340 MsG0480020077.01.T01:intron 40.0%
AAGGCAATACCAGAGAAAAC+AGG + Chr4:33597674-33597693 MsG0480020077.01.T01:CDS 40.0%
ACCATCTTAGAAATCGTGGT+TGG - Chr4:33594059-33594078 None:intergenic 40.0%
ACTGCTTTCTTTAGGTGTCA+TGG + Chr4:33595843-33595862 MsG0480020077.01.T01:CDS 40.0%
ATCAGAGCTTGTCGAATTCA+AGG + Chr4:33594426-33594445 MsG0480020077.01.T01:intron 40.0%
ATGTTAGTGTGTAACGTGTG+TGG - Chr4:33596751-33596770 None:intergenic 40.0%
ATTGAGGAACACTGCTCATA+TGG - Chr4:33597219-33597238 None:intergenic 40.0%
CACACATGCCATTGTATAGA+GGG - Chr4:33595069-33595088 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - Chr4:33593446-33593465 None:intergenic 40.0%
CATAAATGGCTCCACTTATG+TGG + Chr4:33593919-33593938 MsG0480020077.01.T01:intron 40.0%
CATGATACAAACTGAGAAGG+AGG - Chr4:33593283-33593302 None:intergenic 40.0%
CCATCTTAGAAATCGTGGTT+GGG - Chr4:33594058-33594077 None:intergenic 40.0%
CCCAATACAAACCACATAAG+TGG - Chr4:33593933-33593952 None:intergenic 40.0%
GAGGAACAACTCACAACAAT+GGG + Chr4:33594950-33594969 MsG0480020077.01.T01:intron 40.0%
GATCATGTATTGGATCCAGA+AGG + Chr4:33597713-33597732 MsG0480020077.01.T01:CDS 40.0%
GCTATGCCAATGTCAGTAAA+TGG - Chr4:33597746-33597765 None:intergenic 40.0%
GTAAATGGTTCATCTCCTTC+TGG - Chr4:33597731-33597750 None:intergenic 40.0%
TCAGAGCTTGTCGAATTCAA+GGG + Chr4:33594427-33594446 MsG0480020077.01.T01:intron 40.0%
TCTAACACATCTCAAACCAG+TGG - Chr4:33597494-33597513 None:intergenic 40.0%
TGAGGAACAACTCACAACAA+TGG + Chr4:33594949-33594968 MsG0480020077.01.T01:intron 40.0%
TGAGTCTCTAGTAACACCAA+TGG - Chr4:33595759-33595778 None:intergenic 40.0%
TGTGCCACGTAATCAATCTA+AGG + Chr4:33593807-33593826 MsG0480020077.01.T01:intron 40.0%
TGTTAGTGTGTAACGTGTGT+GGG - Chr4:33596750-33596769 None:intergenic 40.0%
TTGAGGAACACTGCTCATAT+GGG - Chr4:33597218-33597237 None:intergenic 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG - Chr4:33597686-33597705 None:intergenic 40.0%
! CAAACATTGGTTGATGTTGG+TGG + Chr4:33595996-33596015 MsG0480020077.01.T01:CDS 40.0%
! GTGTTTAGAGCTGTTATTGC+TGG + Chr4:33595948-33595967 MsG0480020077.01.T01:CDS 40.0%
! GTTCAGTTTGGATTGGACTA+AGG + Chr4:33593302-33593321 MsG0480020077.01.T01:intron 40.0%
! TGGATTGGACTAAGGAGTTT+GGG + Chr4:33593310-33593329 MsG0480020077.01.T01:intron 40.0%
! TTGGATTGGACTAAGGAGTT+TGG + Chr4:33593309-33593328 MsG0480020077.01.T01:intron 40.0%
!! CCAGAAATTTTGAGAAGTGG+GGG - Chr4:33597466-33597485 None:intergenic 40.0%
!! GCCAGAAATTTTGAGAAGTG+GGG - Chr4:33597467-33597486 None:intergenic 40.0%
!! TTTGAAACGGAGGGAGTATT+AGG - Chr4:33596887-33596906 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + Chr4:33593438-33593457 MsG0480020077.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr4:33596896-33596915 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG - Chr4:33596897-33596916 None:intergenic 40.0%
AAAGCTTACCCTCACATCCA+AGG + Chr4:33596050-33596069 MsG0480020077.01.T01:CDS 45.0%
AAAGGACAAGCATGCACAAC+TGG + Chr4:33595921-33595940 MsG0480020077.01.T01:CDS 45.0%
AAATGACTAGGGTGTGAGCA+AGG + Chr4:33595413-33595432 MsG0480020077.01.T01:intron 45.0%
AAGTAGAGTGGAATCAGGAG+AGG - Chr4:33595607-33595626 None:intergenic 45.0%
ACAACTCTGGTGGTAAGGAA+AGG + Chr4:33597789-33597808 MsG0480020077.01.T01:CDS 45.0%
ACACTGCTCATATGGGAGTT+AGG - Chr4:33597211-33597230 None:intergenic 45.0%
AGCCATATAGGAGCTTGTGT+GGG + Chr4:33596620-33596639 MsG0480020077.01.T01:intron 45.0%
AGGAAAGGACTGAAGAGAAC+TGG + Chr4:33597804-33597823 MsG0480020077.01.T01:CDS 45.0%
AGGAGTTTGGGAAACTCTTC+GGG + Chr4:33593322-33593341 MsG0480020077.01.T01:intron 45.0%
AGTAGAGTGGAATCAGGAGA+GGG - Chr4:33595606-33595625 None:intergenic 45.0%
ATCCAAAAGTTTGTGGAGGC+AGG - Chr4:33596648-33596667 None:intergenic 45.0%
ATGGGTGATGCCATCATACT+TGG - Chr4:33596114-33596133 None:intergenic 45.0%
CCCCCACTTCTCAAAATTTC+TGG + Chr4:33597463-33597482 MsG0480020077.01.T01:intron 45.0%
GAAAAACCCAAGTCCCACAT+CGG + Chr4:33593952-33593971 MsG0480020077.01.T01:intron 45.0%
GAAACCGGCGAAATTCTCTA+CGG + Chr4:33595681-33595700 MsG0480020077.01.T01:CDS 45.0%
GAACATGTCTCCTCCAACAT+GGG - Chr4:33596132-33596151 None:intergenic 45.0%
GAAGAGGAGGAATCATTGCT+TGG + Chr4:33595435-33595454 MsG0480020077.01.T01:CDS 45.0%
GAGGGACCAAATCCACAAAA+TGG + Chr4:33595309-33595328 MsG0480020077.01.T01:intron 45.0%
GCACACATGCCATTGTATAG+AGG - Chr4:33595070-33595089 None:intergenic 45.0%
GCGCTTATGAGAAAAGACAG+AGG + Chr4:33593056-33593075 MsG0480020077.01.T01:intron 45.0%
GCTTGACACGTGCATCAAAA+TGG + Chr4:33595703-33595722 MsG0480020077.01.T01:CDS 45.0%
GGGTGGCTAAACATATTGTC+AGG - Chr4:33594241-33594260 None:intergenic 45.0%
GGTTCGTGGACATAAATGGT+GGG - Chr4:33594157-33594176 None:intergenic 45.0%
GTGTGTTAAGAGTCCCACAT+CGG + Chr4:33594204-33594223 MsG0480020077.01.T01:intron 45.0%
GTTAGTGTGTAACGTGTGTG+GGG - Chr4:33596749-33596768 None:intergenic 45.0%
TATGATGGCATCACCCATGT+TGG + Chr4:33596116-33596135 MsG0480020077.01.T01:CDS 45.0%
TCAACATCCACGCACCTTAA+AGG - Chr4:33592909-33592928 None:intergenic 45.0%
TGCTATCAGGTTTCCGCTAT+CGG + Chr4:33594127-33594146 MsG0480020077.01.T01:intron 45.0%
TGGGTGATGCCATCATACTT+GGG - Chr4:33596113-33596132 None:intergenic 45.0%
TGGTTCGTGGACATAAATGG+TGG - Chr4:33594158-33594177 None:intergenic 45.0%
TTAAGAGTCCCACATCGGAT+AGG + Chr4:33594209-33594228 MsG0480020077.01.T01:intron 45.0%
TTGTTTGCACACAACTCTGG+TGG + Chr4:33597779-33597798 MsG0480020077.01.T01:CDS 45.0%
! ACATTGGTTGATGTTGGTGG+TGG + Chr4:33595999-33596018 MsG0480020077.01.T01:CDS 45.0%
! AGGATAGCGGTTTACACTGA+CGG - Chr4:33595551-33595570 None:intergenic 45.0%
! CCCAACCACGATTTCTAAGA+TGG + Chr4:33594055-33594074 MsG0480020077.01.T01:intron 45.0%
! GCTTGGTTCGTGGACATAAA+TGG - Chr4:33594161-33594180 None:intergenic 45.0%
! TAGATAGTTTGAGACAGGGG+CGG + Chr4:33596597-33596616 MsG0480020077.01.T01:intron 45.0%
!! AAAATTTCTGGCTACGCCAC+TGG + Chr4:33597475-33597494 MsG0480020077.01.T01:intron 45.0%
!! CCTCACAAGCCGATTTTGTA+AGG + Chr4:33594377-33594396 MsG0480020077.01.T01:intron 45.0%
!! CCTTACAAAATCGGCTTGTG+AGG - Chr4:33594380-33594399 None:intergenic 45.0%
!! GGTAGTGGATTCTTCATGAC+TGG + Chr4:33597612-33597631 MsG0480020077.01.T01:intron 45.0%
!! GTTGATGTTGGTGGTGGTAT+TGG + Chr4:33596005-33596024 MsG0480020077.01.T01:CDS 45.0%
!! TATATATATATATATATATG+GGG + Chr4:33593405-33593424 MsG0480020077.01.T01:intron 5.0%
!! TCAAAATTAAATAATAAAAA+AGG + Chr4:33593694-33593713 MsG0480020077.01.T01:intron 5.0%
!!! AATTTCTTTTTTTTTTTTTA+GGG - Chr4:33595262-33595281 None:intergenic 5.0%
!!! ATATTTAGTAATATTTTTTT+GGG - Chr4:33596353-33596372 None:intergenic 5.0%
!!! TATAAATTTTATATTTTTTG+CGG + Chr4:33594635-33594654 MsG0480020077.01.T01:intron 5.0%
!!! TATATTTAGTAATATTTTTT+TGG - Chr4:33596354-33596373 None:intergenic 5.0%
!!! TTAAAAAATTCTAATTTTTT+GGG + Chr4:33594687-33594706 MsG0480020077.01.T01:intron 5.0%
AAGTCCCACATCGGATAGAC+GGG + Chr4:33593961-33593980 MsG0480020077.01.T01:intron 50.0%
AGCCCACACAAGCTCCTATA+TGG - Chr4:33596625-33596644 None:intergenic 50.0%
ATCTTGGACCCAGTGGATCT+TGG - Chr4:33594094-33594113 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCGC+CGG - Chr4:33595688-33595707 None:intergenic 50.0%
CAAGTCCCACATCGGATAGA+CGG + Chr4:33593960-33593979 MsG0480020077.01.T01:intron 50.0%
CGAACATGTCTCCTCCAACA+TGG - Chr4:33596133-33596152 None:intergenic 50.0%
CTAACACAGCCCCACAAAAC+CGG - Chr4:33594034-33594053 None:intergenic 50.0%
CTCTCCACCTTCTGCCTTTA+AGG + Chr4:33592892-33592911 MsG0480020077.01.T01:CDS 50.0%
GAGCCATATAGGAGCTTGTG+TGG + Chr4:33596619-33596638 MsG0480020077.01.T01:intron 50.0%
GCTATCAGGTTTCCGCTATC+GGG + Chr4:33594128-33594147 MsG0480020077.01.T01:intron 50.0%
GTCTATCCGATGTGGGACTT+GGG - Chr4:33593961-33593980 None:intergenic 50.0%
TCAACGGCACCCAAGTATGA+TGG + Chr4:33596101-33596120 MsG0480020077.01.T01:CDS 50.0%
TGCACACAACTCTGGTGGTA+AGG + Chr4:33597784-33597803 MsG0480020077.01.T01:CDS 50.0%
TTGGTGCGTGAATAGGTAGG+TGG - Chr4:33594453-33594472 None:intergenic 50.0%
! CTCCTGCCTCCACAAACTTT+TGG + Chr4:33596643-33596662 MsG0480020077.01.T01:intron 50.0%
! TCGTGGACATAAATGGTGGG+TGG - Chr4:33594154-33594173 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + Chr4:33594021-33594040 MsG0480020077.01.T01:intron 50.0%
!! CAAAATCGGCTTGTGAGGTG+AGG - Chr4:33594375-33594394 None:intergenic 50.0%
!! GATAGCGGAAACCTGATAGC+AGG - Chr4:33594128-33594147 None:intergenic 50.0%
!! GATGTTGGTGGTGGTATTGG+CGG + Chr4:33596008-33596027 MsG0480020077.01.T01:CDS 50.0%
!! GGTGCCGTTGAAACAACATG+AGG - Chr4:33596092-33596111 None:intergenic 50.0%
ACGACCAGCACTATTGGGCT+TGG - Chr4:33594178-33594197 None:intergenic 55.0%
AGAGCCTCTCCAAGATCCAC+TGG + Chr4:33594082-33594101 MsG0480020077.01.T01:intron 55.0%
AGAGTCCCGTCTATCCGATG+TGG - Chr4:33593969-33593988 None:intergenic 55.0%
AGCGGAAACCTGATAGCAGG+TGG - Chr4:33594125-33594144 None:intergenic 55.0%
AGGCCATCACCTATCCGATG+TGG - Chr4:33594221-33594240 None:intergenic 55.0%
CACTGGGTCCAAGATCCACT+GGG + Chr4:33594099-33594118 MsG0480020077.01.T01:intron 55.0%
CCACGCACCTTAAAGGCAGA+AGG - Chr4:33592902-33592921 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+GGG - Chr4:33594183-33594202 None:intergenic 55.0%
CGAACCAAGCCCAATAGTGC+TGG + Chr4:33594171-33594190 MsG0480020077.01.T01:intron 55.0%
CGCACCTTAAAGGCAGAAGG+TGG - Chr4:33592899-33592918 None:intergenic 55.0%
CGTCTATCCGATGTGGGACT+TGG - Chr4:33593962-33593981 None:intergenic 55.0%
CTAGGGTGTGAGCAAGGAAG+AGG + Chr4:33595419-33595438 MsG0480020077.01.T01:intron 55.0%
GAGCCTCTCCAAGATCCACT+GGG + Chr4:33594083-33594102 MsG0480020077.01.T01:intron 55.0%
GAGTCCCGTCTATCCGATGT+GGG - Chr4:33593968-33593987 None:intergenic 55.0%
GATGGCATCACCCATGTTGG+AGG + Chr4:33596119-33596138 MsG0480020077.01.T01:CDS 55.0%
GGCAGAAGGTGGAGAGTGAT+TGG - Chr4:33592888-33592907 None:intergenic 55.0%
GGCCATCACCTATCCGATGT+GGG - Chr4:33594220-33594239 None:intergenic 55.0%
GTCCCACATCGGATAGGTGA+TGG + Chr4:33594215-33594234 MsG0480020077.01.T01:intron 55.0%
! GCACTATTGGGCTTGGTTCG+TGG - Chr4:33594171-33594190 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - Chr4:33594020-33594039 None:intergenic 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG + Chr4:33594182-33594201 MsG0480020077.01.T01:intron 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + Chr4:33594020-33594039 MsG0480020077.01.T01:intron 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG + Chr4:33594181-33594200 MsG0480020077.01.T01:intron 55.0%
!! CCCAATAGTGCTGGTCGTGA+GGG + Chr4:33594180-33594199 MsG0480020077.01.T01:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + Chr4:33594022-33594041 MsG0480020077.01.T01:intron 55.0%
!! CCTTCTGCCTTTAAGGTGCG+TGG + Chr4:33592899-33592918 MsG0480020077.01.T01:intron 55.0%
AGACAGGGGCGGAGCCATAT+AGG + Chr4:33596608-33596627 MsG0480020077.01.T01:intron 60.0%
CCACTGGGTCCAAGATCCAC+TGG + Chr4:33594098-33594117 MsG0480020077.01.T01:intron 60.0%
CCAGTGGATCTTGGACCCAG+TGG - Chr4:33594101-33594120 None:intergenic 60.0%
CCCCTCACGACCAGCACTAT+TGG - Chr4:33594184-33594203 None:intergenic 60.0%
GCACTCCTCACCTCACAAGC+CGG + Chr4:33594012-33594031 MsG0480020077.01.T01:intron 60.0%
GGACCCAGTGGATCTTGGAG+AGG - Chr4:33594089-33594108 None:intergenic 60.0%
GGGTGTGAGCAAGGAAGAGG+AGG + Chr4:33595422-33595441 MsG0480020077.01.T01:intron 60.0%
!! AATGGTGGGTGGCCCGATAG+CGG - Chr4:33594143-33594162 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - Chr4:33594025-33594044 None:intergenic 60.0%
!! GCCCAATAGTGCTGGTCGTG+AGG + Chr4:33594179-33594198 MsG0480020077.01.T01:intron 60.0%
CCACTGGGCCACCTGCTATC+AGG + Chr4:33594114-33594133 MsG0480020077.01.T01:intron 65.0%
CCTGATAGCAGGTGGCCCAG+TGG - Chr4:33594117-33594136 None:intergenic 65.0%
GCAGGTGGCCCAGTGGATCT+TGG - Chr4:33594110-33594129 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 33592869 33597916 33592869 ID=MsG0480020077.01;Name=MsG0480020077.01
Chr4 mRNA 33592869 33597916 33592869 ID=MsG0480020077.01.T01;Parent=MsG0480020077.01;Name=MsG0480020077.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0.5|0.33|3|0|369
Chr4 exon 33592869 33592913 33592869 ID=MsG0480020077.01.T01:exon:4506;Parent=MsG0480020077.01.T01
Chr4 exon 33595423 33596187 33595423 ID=MsG0480020077.01.T01:exon:4505;Parent=MsG0480020077.01.T01
Chr4 exon 33597617 33597916 33597617 ID=MsG0480020077.01.T01:exon:4504;Parent=MsG0480020077.01.T01
Chr4 CDS 33592869 33592913 33592869 ID=MsG0480020077.01.T01:cds;Parent=MsG0480020077.01.T01
Chr4 CDS 33595423 33596187 33595423 ID=MsG0480020077.01.T01:cds;Parent=MsG0480020077.01.T01
Chr4 CDS 33597617 33597916 33597617 ID=MsG0480020077.01.T01:cds;Parent=MsG0480020077.01.T01
Gene Sequence

>MsG0480020077.01.T01

ATGGAGACTGTTCTTTCCAATCACTCTCCACCTTCTGCCTTTAAGGGTGTGAGCAAGGAAGAGGAGGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTTACAGACTCTTTTGCTCTAAAAGCAGTTGTGGAGCTACGTATAGCTGATATTATAGACCGTCAGTGTAAACCGCTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCCTCTCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTAATGGTTCGTAGAAAGATTTTCAGTGCAGAAAAATCAGAAACCGGCGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATTCTACAAGACACAAAAGTGACATTGGCACCATTGGTGTTACTAGAGACTCACCCAACTCATATGAACCCTTTTAACTTTATGAGTGAAATTGTAAAAGAAGGCACAAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTTATGACCAATTTGAAATGGCTAGTGTTGACCCAAAATTCAATGAGTTGTTTAACAAAGGACAAGCATGCACAACTGGATTTGTGTTTAGAGCTGTTATTGCTGGATACAAAGATGGATTTAACCAAATTCAAACATTGGTTGATGTTGGTGGTGGTATTGGCGGATCGATGTCTGAGATTGTTAAAGCTTACCCTCACATCCAAGGTATTAATTTTGATTTGCCTCATGTTGTTTCAACGGCACCCAAGTATGATGGCATCACCCATGTTGGAGGAGACATGTTCGTTTCTATTCCTAGTGCTGATGCTATTTACATCAAGTGGATTCTTCATGACTGGAGTGATGACCATTGCATAAAGATATTGAAGAACTGTAGGAAGGCAATACCAGAGAAAACAGGAAAGGTGATAATATTGGATCATGTATTGGATCCAGAAGGAGATGAACCATTTACTGACATTGGCATAGCATTTGACATGATATTGTTTGCACACAACTCTGGTGGTAAGGAAAGGACTGAAGAGAACTGGAGATACTTATTCAAAGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTTTGCTATCCATCATTGAAGCATTTCCAATCTAA
Protein sequence

>MsG0480020077.01.T01

METVLSNHSPPSAFKGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRQCKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKVTLAPLVLLETHPTHMNPFNFMSEIVKEGTKNGTAFFRCHGYDQFEMASVDPKFNELFNKGQACTTGFVFRAVIAGYKDGFNQIQTLVDVGGGIGGSMSEIVKAYPHIQGINFDLPHVVSTAPKYDGITHVGGDMFVSIPSADAIYIKWILHDWSDDHCIKILKNCRKAIPEKTGKVIILDHVLDPEGDEPFTDIGIAFDMILFAHNSGGKERTEENWRYLFKETGFPRYNIIKINALLSIIEAFPI*