AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020072.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020072.01.T01 MTR_4g038440 96.588 381 1 1 1 381 1 369 0.0 759
MsG0480020072.01.T01 MTR_0079s0070 99.701 335 1 0 47 381 1 335 0.0 699
MsG0480020072.01.T01 MTR_0017s0100 83.727 381 50 1 1 381 1 369 0.0 671
MsG0480020072.01.T01 MTR_4g038440 95.745 282 0 1 1 282 1 270 0.0 550
MsG0480020072.01.T01 MTR_3g083620 39.412 340 195 6 43 378 27 359 5.93e-84 260
MsG0480020072.01.T01 MTR_5g074600 40.720 361 202 7 27 380 4 359 1.43e-83 259
MsG0480020072.01.T01 MTR_5g074680 38.968 349 203 6 37 379 15 359 8.38e-80 249
MsG0480020072.01.T01 MTR_5g074580 38.567 363 206 8 30 380 3 360 6.14e-75 236
MsG0480020072.01.T01 MTR_7g118300 39.943 353 185 11 22 361 18 356 4.49e-73 232
MsG0480020072.01.T01 MTR_7g118320 37.209 344 193 12 34 361 7 343 7.92e-71 226
MsG0480020072.01.T01 MTR_8g024160 44.118 306 149 10 72 361 10 309 3.05e-69 221
MsG0480020072.01.T01 MTR_5g074540 37.069 348 195 7 37 380 14 341 1.38e-67 217
MsG0480020072.01.T01 MTR_3g092900 36.364 319 190 8 56 366 36 349 4.04e-67 217
MsG0480020072.01.T01 MTR_5g098170 38.838 327 172 11 56 366 35 349 1.51e-66 215
MsG0480020072.01.T01 MTR_5g074610 36.963 349 183 8 37 380 10 326 3.76e-66 213
MsG0480020072.01.T01 MTR_8g068750 37.784 352 197 12 32 370 27 369 4.53e-66 214
MsG0480020072.01.T01 MTR_4g079160 35.655 359 200 8 37 380 13 355 4.64e-66 214
MsG0480020072.01.T01 MTR_1g076940 36.212 359 213 9 32 380 9 361 4.77e-65 211
MsG0480020072.01.T01 MTR_0591s0010 34.844 353 209 10 24 361 12 358 2.98e-62 204
MsG0480020072.01.T01 MTR_7g014510 34.615 364 212 9 30 380 7 357 7.48e-60 197
MsG0480020072.01.T01 MTR_8g068690 34.167 360 212 11 25 365 8 361 1.51e-59 197
MsG0480020072.01.T01 MTR_8g068870 35.191 341 201 11 32 361 13 344 4.25e-59 196
MsG0480020072.01.T01 MTR_4g088345 33.714 350 223 7 35 380 12 356 1.52e-58 194
MsG0480020072.01.T01 MTR_7g024500 33.526 346 218 7 35 377 11 347 2.25e-58 193
MsG0480020072.01.T01 MTR_7g024520 34.018 341 213 6 40 377 16 347 1.45e-57 191
MsG0480020072.01.T01 MTR_7g014570 33.989 356 218 8 31 380 8 352 3.91e-57 190
MsG0480020072.01.T01 MTR_4g088200 33.053 357 227 8 32 380 9 361 1.18e-56 189
MsG0480020072.01.T01 MTR_4g033150 34.819 359 220 8 32 380 9 363 2.05e-56 189
MsG0480020072.01.T01 MTR_4g088340 34.320 338 213 7 47 380 1 333 3.35e-56 187
MsG0480020072.01.T01 MTR_6g078850 35.000 320 191 9 54 361 50 364 5.30e-56 191
MsG0480020072.01.T01 MTR_4g033015 34.605 367 225 9 25 380 1 363 1.08e-53 182
MsG0480020072.01.T01 MTR_4g033200 34.540 359 221 8 32 380 9 363 7.47e-53 179
MsG0480020072.01.T01 MTR_4g088190 34.626 361 219 9 32 380 9 364 2.97e-52 178
MsG0480020072.01.T01 MTR_8g068570 33.235 340 179 11 24 348 12 318 6.81e-52 176
MsG0480020072.01.T01 MTR_3g021440 34.688 320 195 10 56 367 43 356 5.59e-51 175
MsG0480020072.01.T01 MTR_7g012090 35.866 329 186 10 56 367 41 361 1.63e-50 174
MsG0480020072.01.T01 MTR_2g055940 35.514 321 186 10 56 364 35 346 2.58e-50 173
MsG0480020072.01.T01 MTR_7g012070 36.474 329 184 10 56 367 41 361 1.27e-49 171
MsG0480020072.01.T01 MTR_1g096310 34.985 323 192 8 56 366 41 357 3.26e-49 170
MsG0480020072.01.T01 MTR_7g012020 35.185 324 190 11 56 367 40 355 3.82e-49 170
MsG0480020072.01.T01 MTR_1g036510 33.333 324 196 11 56 366 52 368 7.52e-49 169
MsG0480020072.01.T01 MTR_7g012040 35.093 322 192 11 56 367 40 354 3.91e-48 167
MsG0480020072.01.T01 MTR_1g036490 32.743 339 206 12 56 379 38 369 6.04e-48 167
MsG0480020072.01.T01 MTR_3g096050 32.022 356 229 9 28 377 7 355 1.50e-47 166
MsG0480020072.01.T01 MTR_1g036460 33.642 324 195 11 56 366 38 354 1.62e-47 166
MsG0480020072.01.T01 MTR_7g011990 33.951 324 191 11 56 367 41 353 7.24e-47 164
MsG0480020072.01.T01 MTR_3g021430 32.500 320 202 9 56 367 30 343 1.40e-46 163
MsG0480020072.01.T01 MTR_2g072790 33.636 330 208 9 54 377 27 351 2.05e-46 162
MsG0480020072.01.T01 MTR_7g011900 34.056 323 193 10 56 366 41 355 2.73e-46 162
MsG0480020072.01.T01 MTR_8g068730 33.043 345 171 11 32 361 27 326 1.59e-45 160
MsG0480020072.01.T01 MTR_4g033170 32.493 357 225 8 32 380 9 357 9.31e-45 158
MsG0480020072.01.T01 MTR_4g033085 31.921 354 231 7 32 380 9 357 2.06e-41 149
MsG0480020072.01.T01 MTR_3g096070 30.899 356 210 11 28 377 7 332 6.09e-41 147
MsG0480020072.01.T01 MTR_8g068690 32.258 279 166 9 25 285 8 281 1.01e-38 140
MsG0480020072.01.T01 MTR_8g068600 35.193 233 136 7 61 283 27 254 8.03e-36 132
MsG0480020072.01.T01 MTR_8g068740 33.094 278 130 8 32 296 27 261 2.59e-35 131
MsG0480020072.01.T01 MTR_3g096050 32.558 258 164 6 29 282 8 259 2.78e-32 122
MsG0480020072.01.T01 MTR_1g050220 40.373 161 79 6 218 375 152 298 2.79e-31 120
MsG0480020072.01.T01 MTR_8g068620 48.673 113 57 1 173 285 2 113 9.72e-30 111
MsG0480020072.01.T01 MTR_7g012020 34.025 241 146 7 55 286 39 275 1.90e-29 115
MsG0480020072.01.T01 MTR_1g076930 32.051 234 150 6 54 282 8 237 8.22e-29 112
MsG0480020072.01.T01 MTR_4g025570 46.875 96 51 0 284 379 122 217 1.39e-26 105
MsG0480020072.01.T01 MTR_4g025570 42.105 76 40 1 33 108 17 88 6.55e-12 65.1
MsG0480020072.01.T01 MTR_1g036510 30.802 237 151 6 56 282 52 285 5.62e-26 106
MsG0480020072.01.T01 MTR_0794s0020 30.328 244 160 5 32 268 9 249 2.17e-25 103
MsG0480020072.01.T01 MTR_7g012020 32.558 215 132 7 56 261 40 250 2.63e-21 92.4
MsG0480020072.01.T01 MTR_1g036510 27.778 216 143 6 56 261 52 264 4.36e-17 80.9
MsG0480020072.01.T01 MTR_8g068760 37.097 124 54 6 256 370 117 225 2.87e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020072.01.T01 AT5G54160 38.318 321 185 7 54 367 34 348 3.63e-72 229
MsG0480020072.01.T01 AT4G35160 34.254 362 217 6 34 379 24 380 9.98e-66 214
MsG0480020072.01.T01 AT1G77520 36.240 367 211 10 29 377 17 378 2.84e-64 210
MsG0480020072.01.T01 AT1G51990 32.698 367 223 12 27 380 7 362 9.49e-57 190
MsG0480020072.01.T01 AT4G35150 30.056 356 197 7 34 379 10 323 2.38e-56 187
MsG0480020072.01.T01 AT1G33030 36.760 321 186 11 56 366 23 336 3.04e-55 186
MsG0480020072.01.T01 AT1G77530 35.753 372 216 11 24 377 12 378 1.23e-54 185
MsG0480020072.01.T01 AT1G51990 32.425 367 224 12 27 380 7 362 1.50e-54 184
MsG0480020072.01.T01 AT1G63140 35.693 339 197 9 45 367 35 368 2.97e-54 184
MsG0480020072.01.T01 AT1G63140 35.693 339 197 9 45 367 55 388 4.91e-54 184
MsG0480020072.01.T01 AT5G53810 34.694 343 196 10 56 381 42 373 8.42e-52 177
MsG0480020072.01.T01 AT3G53140 33.618 351 215 10 39 377 12 356 5.18e-49 169
MsG0480020072.01.T01 AT1G62900 45.026 191 101 3 179 367 4 192 1.01e-47 161
MsG0480020072.01.T01 AT5G37170 36.052 233 142 5 150 377 1 231 1.90e-45 156
MsG0480020072.01.T01 AT1G21130 35.207 338 197 13 56 379 42 371 2.59e-45 160
MsG0480020072.01.T01 AT1G21100 35.207 338 197 12 56 379 42 371 5.12e-45 159
MsG0480020072.01.T01 AT5G37170 30.447 358 207 11 24 377 12 331 6.38e-45 158
MsG0480020072.01.T01 AT1G21120 34.320 338 200 12 56 379 42 371 1.45e-43 155
MsG0480020072.01.T01 AT1G21110 33.728 338 202 12 56 379 42 371 3.95e-43 154
MsG0480020072.01.T01 AT1G21120 34.320 338 200 12 56 379 90 419 4.64e-43 155
MsG0480020072.01.T01 AT1G76790 34.954 329 189 12 56 367 32 352 7.56e-41 148
MsG0480020072.01.T01 AT5G37170 39.560 182 105 4 199 377 4 183 2.03e-40 142
MsG0480020072.01.T01 AT1G33030 35.745 235 138 8 56 282 23 252 9.26e-31 118
MsG0480020072.01.T01 AT1G33030 35.745 235 138 8 56 282 23 252 1.75e-30 118
MsG0480020072.01.T01 AT1G63140 32.780 241 144 7 56 282 66 302 3.43e-26 107
MsG0480020072.01.T01 AT1G21130 33.891 239 140 10 56 282 42 274 5.56e-21 92.4
MsG0480020072.01.T01 AT1G63140 30.556 216 132 7 56 257 66 277 2.33e-16 79.3
MsG0480020072.01.T01 AT1G77530 30.709 254 156 9 24 261 12 261 1.19e-15 77.0

Find 111 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCAACCAAAGACTTAATT+TGG 0.166048 4:+33386277 None:intergenic
GTAAATGGTTCATTTCCTTC+TGG 0.225351 4:+33385832 None:intergenic
TGCTTGGACAAATTGAAATA+TGG 0.256837 4:-33386815 MsG0480020072.01.T01:CDS
GTTTAACCAAATTAAGTCTT+TGG 0.272207 4:-33386283 MsG0480020072.01.T01:CDS
TGGGTGATACCATCAAAATT+AGG 0.296621 4:+33386156 None:intergenic
AAAATGGCACTGCTTTCTTT+AGG 0.298524 4:-33386431 MsG0480020072.01.T01:CDS
GCTATCCCAGTGTCGGTAAA+TGG 0.307296 4:+33385817 None:intergenic
ACCAATCAACACACCTGAAT+TGG 0.309108 4:-33390590 MsG0480020072.01.T01:five_prime_UTR
CTCACCACCTTCTGCCTTCA+AGG 0.309125 4:-33390478 MsG0480020072.01.T01:intron
TATAAAACTTGATTAATAAT+AGG 0.311305 4:+33386874 None:intergenic
GGGTGATACCATCAAAATTA+GGG 0.313744 4:+33386157 None:intergenic
GCTTGACACGTGCATCAAAA+TGG 0.327202 4:-33386563 MsG0480020072.01.T01:CDS
TAAATGGTTCATTTCCTTCT+GGG 0.333897 4:+33385833 None:intergenic
TTGTGTTGTGTGGCTTTACT+TGG 0.351030 4:-33385577 MsG0480020072.01.T01:three_prime_UTR
CTTAAAAGTAGAGTGGAATC+AGG 0.364299 4:+33386657 None:intergenic
GGCAGTGGATTCTTCATGAT+TGG 0.364458 4:-33385948 MsG0480020072.01.T01:intron
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4:+33386698 None:intergenic
TAAAGATATTGAAGAATTGT+AGG 0.382866 4:-33385909 MsG0480020072.01.T01:CDS
AGTCTTTGGTTGATGTTGGT+GGG 0.383991 4:-33386269 MsG0480020072.01.T01:CDS
TCCAATTCAGGTGTGTTGAT+TGG 0.385083 4:+33390589 None:intergenic
GGCAGAAGGTGGTGAGTGTT+TGG 0.386189 4:+33390485 None:intergenic
GTGTCGAGGGCTGTTATTGC+TGG 0.396054 4:-33386318 MsG0480020072.01.T01:CDS
GTCTTTGGTTGATGTTGGTG+GGG 0.401604 4:-33386268 MsG0480020072.01.T01:CDS
ACAATTTGAGTTAAGGATAG+TGG 0.413559 4:+33386705 None:intergenic
AAGTCTTTGGTTGATGTTGG+TGG 0.413586 4:-33386270 MsG0480020072.01.T01:CDS
ATTAGTGAAATTATAAAAGA+AGG 0.414681 4:-33386459 MsG0480020072.01.T01:CDS
AGGGAAGAAAGCCTTTGTTT+TGG 0.416945 4:+33390565 None:intergenic
AAGAAAGAACTGAAGAGAAC+TGG 0.424963 4:-33385756 MsG0480020072.01.T01:CDS
GCCATAACGGTCTATAATAT+CGG 0.426995 4:+33386731 None:intergenic
CATCTTCCATGAATTTAGAC+TGG 0.428951 4:+33385652 None:intergenic
TTAGCAGGGTTCAAATGAAA+AGG 0.429287 4:+33386486 None:intergenic
ATTTCACTAATAAAGTTAGC+AGG 0.435103 4:+33386471 None:intergenic
GTTATTGCTGGATACAAAGA+TGG 0.437111 4:-33386306 MsG0480020072.01.T01:CDS
GCATTCCCAGTCTAAATTCA+TGG 0.449506 4:-33385658 MsG0480020072.01.T01:exon
ACTGCTTTCTTTAGGTGTCA+TGG 0.450664 4:-33386423 MsG0480020072.01.T01:CDS
CATGAACAATTTGAAATGAC+GGG 0.462928 4:-33386399 MsG0480020072.01.T01:CDS
AGGATAGTGGTTTGCCATAA+CGG 0.463766 4:+33386718 None:intergenic
TTCAAATTATGATACACAAA+AGG 0.466985 4:+33385529 None:intergenic
TCTATATCTACGCACCTTGA+AGG 0.472047 4:+33390464 None:intergenic
CTTCTTCCTTGCTCACACCC+TGG 0.474811 4:+33386847 None:intergenic
ATGGAAGATGATGAGTTTGT+TGG 0.475780 4:-33385639 MsG0480020072.01.T01:three_prime_UTR
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4:-33385886 MsG0480020072.01.T01:CDS
TGGTTTCAAGTGAGGGGTGA+GGG 0.478167 4:+33390546 None:intergenic
TCTTTGGTTGATGTTGGTGG+GGG 0.478335 4:-33386267 MsG0480020072.01.T01:CDS
GCCGATATTATAGACCGTTA+TGG 0.483784 4:-33386732 MsG0480020072.01.T01:CDS
ATGTTGCTTGCTCACAATGC+TGG 0.486841 4:-33385784 MsG0480020072.01.T01:CDS
TAACTTTGATTTGCCTCATG+TGG 0.490029 4:-33386190 MsG0480020072.01.T01:CDS
AAACATGTCTCCTCCAACAT+GGG 0.498630 4:+33386137 None:intergenic
TTAAAAGTAGAGTGGAATCA+GGG 0.508759 4:+33386658 None:intergenic
GAAGAAGAAGAATCATTGCT+TGG 0.509681 4:-33386831 MsG0480020072.01.T01:CDS
TTTGATGGTATCACCCATGT+TGG 0.511129 4:-33386150 MsG0480020072.01.T01:CDS
GATCATTGTGGATCATGTAT+TGG 0.519603 4:-33385857 MsG0480020072.01.T01:CDS
AATGAACCATTTACCGACAC+TGG 0.520366 4:-33385823 MsG0480020072.01.T01:CDS
TGACTTGTTCAACCAAGGTA+TGG 0.521535 4:-33386358 MsG0480020072.01.T01:CDS
GATGGTATCACCCATGTTGG+AGG 0.521547 4:-33386147 MsG0480020072.01.T01:CDS
AGCTAGCTATGATTCATGCA+TGG 0.523703 4:-33385483 MsG0480020072.01.T01:three_prime_UTR
ATTAAGTCTTTGGTTGATGT+TGG 0.530572 4:-33386273 MsG0480020072.01.T01:CDS
ACAATTTGAAATGACGGGGT+TGG 0.533144 4:-33386394 MsG0480020072.01.T01:CDS
TCTTCAATATCTTTATGCAA+TGG 0.534210 4:+33385917 None:intergenic
CAAACATGTCTCCTCCAACA+TGG 0.536952 4:+33386136 None:intergenic
AAATACTTATTCAACGAGAC+AGG 0.536963 4:-33385733 MsG0480020072.01.T01:CDS
ATGGTTTCAAGTGAGGGGTG+AGG 0.537632 4:+33390545 None:intergenic
TTTCACTAATAAAGTTAGCA+GGG 0.540307 4:+33386472 None:intergenic
GCTAGCTATGATTCATGCAT+GGG 0.540353 4:-33385482 MsG0480020072.01.T01:three_prime_UTR
CAAGCCGTAGAGAATTTCCC+CGG 0.542265 4:+33386581 None:intergenic
TGCTGATGCTATTTACATGA+AGG 0.545789 4:-33386100 MsG0480020072.01.T01:intron
TAGCAGGGTTCAAATGAAAA+GGG 0.549937 4:+33386487 None:intergenic
CATGAATCATAGCTAGCTCT+AGG 0.551516 4:+33385488 None:intergenic
TCATGAACAATTTGAAATGA+CGG 0.554113 4:-33386400 MsG0480020072.01.T01:CDS
TTCGTATGTGTTGTGTTGTG+TGG 0.557358 4:-33385587 MsG0480020072.01.T01:three_prime_UTR
TTATTGCTGGATACAAAGAT+GGG 0.557554 4:-33386305 MsG0480020072.01.T01:CDS
GATATTGAAGAATTGTAGGA+AGG 0.557857 4:-33385905 MsG0480020072.01.T01:CDS
GAATGAGATGGTTTCAAGTG+AGG 0.558838 4:+33390538 None:intergenic
TTTAAGAGTAATGAGAGTCA+TGG 0.559249 4:-33386640 MsG0480020072.01.T01:CDS
TATTGACCAGGGTGTGAGCA+AGG 0.559868 4:-33386853 MsG0480020072.01.T01:CDS
AAACTTGATTAATAATAGGA+TGG 0.571512 4:+33386878 None:intergenic
ATCTTCCATGAATTTAGACT+GGG 0.572590 4:+33385653 None:intergenic
CACCGCTAGAATTGTGTCGA+GGG 0.576078 4:-33386331 MsG0480020072.01.T01:CDS
ACTGCTATCTGATCTGCTGA+TGG 0.576760 4:+33385444 None:intergenic
AATGAGATGGTTTCAAGTGA+GGG 0.579215 4:+33390539 None:intergenic
TAGCGGTGCAAACCATACCT+TGG 0.586631 4:+33386346 None:intergenic
CATTACTCTTAAAAGTAGAG+TGG 0.588009 4:+33386650 None:intergenic
GCACCGCTAGAATTGTGTCG+AGG 0.594031 4:-33386332 MsG0480020072.01.T01:CDS
ATGTAAATAGCATCAGCACT+AGG 0.596076 4:+33386105 None:intergenic
GTCAAATGCTATCCCAGTGT+CGG 0.602762 4:+33385810 None:intergenic
CTACGCACCTTGAAGGCAGA+AGG 0.604702 4:+33390471 None:intergenic
TGCTCTGCCATGCATCATTG+AGG 0.607068 4:-33385680 MsG0480020072.01.T01:CDS
ATGAACCATTTACCGACACT+GGG 0.609768 4:-33385822 MsG0480020072.01.T01:CDS
AAGTTAATAGCTTGAATGTG+AGG 0.610156 4:+33386207 None:intergenic
GAAACCGGGGAAATTCTCTA+CGG 0.620852 4:-33386585 MsG0480020072.01.T01:CDS
CGCACCTTGAAGGCAGAAGG+TGG 0.621755 4:+33390474 None:intergenic
TACAATGACTTGTTCAACCA+AGG 0.624846 4:-33386363 MsG0480020072.01.T01:CDS
ATGAGATGGTTTCAAGTGAG+GGG 0.626615 4:+33390540 None:intergenic
AGCTATGATTCATGCATGGG+GGG 0.627479 4:-33385479 MsG0480020072.01.T01:three_prime_UTR
TTGCTTGCTCACAATGCTGG+TGG 0.636119 4:-33385781 MsG0480020072.01.T01:CDS
GGGTATCGGAGGATCTCTCT+CGG 0.640837 4:-33386247 MsG0480020072.01.T01:CDS
CTAGCTATGATTCATGCATG+GGG 0.649012 4:-33385481 MsG0480020072.01.T01:three_prime_UTR
TGATTCTCTAGCAACAACAT+TGG 0.649459 4:+33386510 None:intergenic
CTGAATTGGAACCAAAACAA+AGG 0.651322 4:-33390576 MsG0480020072.01.T01:five_prime_UTR
GATCATGTATTGGACCCAGA+AGG 0.652817 4:-33385847 MsG0480020072.01.T01:CDS
GGGAATGCCTCAATGATGCA+TGG 0.663145 4:+33385673 None:intergenic
AACAGGAAAAGTGATCATTG+TGG 0.665184 4:-33385869 MsG0480020072.01.T01:CDS
TAAAAGTAGAGTGGAATCAG+GGG 0.667415 4:+33386659 None:intergenic
AGTAGAGTGGAATCAGGGGA+AGG 0.670234 4:+33386663 None:intergenic
ATGAACAATTTGAAATGACG+GGG 0.676832 4:-33386398 MsG0480020072.01.T01:CDS
GGTGATACCATCAAAATTAG+GGG 0.681590 4:+33386158 None:intergenic
GAATCATAGCTAGCTCTAGG+TGG 0.688847 4:+33385491 None:intergenic
AGCCCTCGACACAATTCTAG+CGG 0.693934 4:+33386329 None:intergenic
GATACCATCAAAATTAGGGG+CGG 0.701505 4:+33386161 None:intergenic
TAGCTATGATTCATGCATGG+GGG 0.705108 4:-33385480 MsG0480020072.01.T01:three_prime_UTR
GGGGCGGTTGAAACCACATG+AGG 0.705484 4:+33386177 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTATAAATGTATC+TGG + Chr4:33385714-33385733 None:intergenic 10.0%
!! AAATTTGATAAAAAAATTAG+AGG + Chr4:33387268-33387287 None:intergenic 10.0%
!! AATAAAATACATATGATAAA+AGG + Chr4:33387852-33387871 None:intergenic 10.0%
!! TACATATATAATTTGATTAA+TGG - Chr4:33387014-33387033 MsG0480020072.01.T01:intron 10.0%
!! TATAAAACTTGATTAATAAT+AGG + Chr4:33389089-33389108 None:intergenic 10.0%
!! TTGAAAAAAAAAAACTTAAT+AGG - Chr4:33386808-33386827 MsG0480020072.01.T01:CDS 10.0%
!!! ATTTTAAAATTCATCAATTT+TGG + Chr4:33388331-33388350 None:intergenic 10.0%
!! AAAAAAAATCATATGTATCA+TGG - Chr4:33387883-33387902 MsG0480020072.01.T01:intron 15.0%
!! AAAAAGAAAGAAGAAAAATA+GGG + Chr4:33386672-33386691 None:intergenic 15.0%
!! AAAAGAAACCTTATAAAAAA+TGG - Chr4:33388455-33388474 MsG0480020072.01.T01:intron 15.0%
!! ACACATGAATTTAATTATAA+TGG - Chr4:33389939-33389958 MsG0480020072.01.T01:intron 15.0%
!! ATAATTTAGATAATGTCATA+TGG + Chr4:33387953-33387972 None:intergenic 15.0%
!! ATTAGTGAAATTATAAAAGA+AGG - Chr4:33389501-33389520 MsG0480020072.01.T01:intron 15.0%
!! GCAAAATTGAATTATAAAAT+TGG - Chr4:33386074-33386093 MsG0480020072.01.T01:intron 15.0%
!! TAAAAAGAAAGAAGAAAAAT+AGG + Chr4:33386673-33386692 None:intergenic 15.0%
!! TAATTTAGATAATGTCATAT+GGG + Chr4:33387952-33387971 None:intergenic 15.0%
!! TATAAGTGATTATTTGAAAA+AGG - Chr4:33386772-33386791 MsG0480020072.01.T01:CDS 15.0%
!!! AGATTTAATATTTTCCAAAT+AGG - Chr4:33387553-33387572 MsG0480020072.01.T01:intron 15.0%
!!! ATATTTCACCATTTTTTATA+AGG + Chr4:33388466-33388485 None:intergenic 15.0%
!!! CATATGATTTTTTTTTTTTG+AGG + Chr4:33387878-33387897 None:intergenic 15.0%
!!! CATTTTTGTAATTTATCAAT+TGG - Chr4:33388219-33388238 MsG0480020072.01.T01:intron 15.0%
!!! CTTATTGATCTTTTTTTTTT+TGG + Chr4:33386992-33387011 None:intergenic 15.0%
!!! GAATTTGTTATTTTACTTAA+TGG - Chr4:33386551-33386570 MsG0480020072.01.T01:CDS 15.0%
!!! TAAACATTGATAATATCTTT+AGG - Chr4:33388958-33388977 MsG0480020072.01.T01:intron 15.0%
!!! TATTTTTATGTAATTGAGAT+AGG + Chr4:33388800-33388819 None:intergenic 15.0%
!!! TCATATTCTTATTAGATTTT+AGG - Chr4:33387972-33387991 MsG0480020072.01.T01:intron 15.0%
!!! TCTTTAGTTTATAAATAAGT+GGG + Chr4:33388080-33388099 None:intergenic 15.0%
!!! TTAAAATTGACTTTATCTTT+GGG - Chr4:33389984-33390003 MsG0480020072.01.T01:intron 15.0%
!!! TTCTTTAGTTTATAAATAAG+TGG + Chr4:33388081-33388100 None:intergenic 15.0%
!!! TTTAAAATTGACTTTATCTT+TGG - Chr4:33389983-33390002 MsG0480020072.01.T01:intron 15.0%
!! AAACTTGATTAATAATAGGA+TGG + Chr4:33389085-33389104 None:intergenic 20.0%
!! AAGAAAAAAAAGAACCTATT+TGG + Chr4:33387570-33387589 None:intergenic 20.0%
!! AAGAAAAAGAAGATTATAAC+CGG + Chr4:33387747-33387766 None:intergenic 20.0%
!! ACAAAAATTGTTAAACATTG+TGG + Chr4:33386489-33386508 None:intergenic 20.0%
!! ATCTTAATTAAAGATAGTGT+TGG + Chr4:33386641-33386660 None:intergenic 20.0%
!! CAATTTAAATAAGACTAAGT+AGG + Chr4:33385633-33385652 None:intergenic 20.0%
!! CAGTATTATATACAATAATC+TGG + Chr4:33387704-33387723 None:intergenic 20.0%
!! GGTCTATAATGATAAAATAT+AGG + Chr4:33388408-33388427 None:intergenic 20.0%
!! GTCATCATTATTTAAAAATC+AGG + Chr4:33387475-33387494 None:intergenic 20.0%
!! TAAAGATATTGAAGAATTGT+AGG - Chr4:33390051-33390070 MsG0480020072.01.T01:intron 20.0%
!! TGAGCAATAATAACTATTAA+AGG + Chr4:33388880-33388899 None:intergenic 20.0%
!! TTCAAATTATGATACACAAA+AGG + Chr4:33390434-33390453 None:intergenic 20.0%
!! TTTCAAATTTATTGTGCATT+TGG - Chr4:33389911-33389930 MsG0480020072.01.T01:intron 20.0%
!!! AAAAATTTTGTTTACCACAA+TGG - Chr4:33387605-33387624 MsG0480020072.01.T01:intron 20.0%
!!! AAAATTTTGTTTACCACAAT+GGG - Chr4:33387606-33387625 MsG0480020072.01.T01:intron 20.0%
!!! AGACTTTTACTTTTCTAATT+TGG + Chr4:33387445-33387464 None:intergenic 20.0%
!!! CAAATTTTTAGACTAAACAA+TGG + Chr4:33388299-33388318 None:intergenic 20.0%
!!! GTTACTATGGTATAATTTTA+TGG - Chr4:33387640-33387659 MsG0480020072.01.T01:intron 20.0%
!!! TACATTTTTGAGTTTTTGAA+TGG - Chr4:33386185-33386204 MsG0480020072.01.T01:CDS 20.0%
!!! TTTTGTAATTTATCAATTGG+AGG - Chr4:33388222-33388241 MsG0480020072.01.T01:intron 20.0%
!!! TTTTTTTTTTTAAGAGAGTG+TGG + Chr4:33388511-33388530 None:intergenic 20.0%
! AAAAAATTAGAGGATCTTGT+AGG + Chr4:33387258-33387277 None:intergenic 25.0%
! AACTTTAACCTCAGTAAAAA+AGG + Chr4:33386862-33386881 None:intergenic 25.0%
! ACTTATAACTAAAAAACTGG+CGG - Chr4:33386341-33386360 MsG0480020072.01.T01:CDS 25.0%
! ACTTTAACCTCAGTAAAAAA+GGG + Chr4:33386861-33386880 None:intergenic 25.0%
! AGATACCAATCAAGATTTAT+TGG + Chr4:33386045-33386064 None:intergenic 25.0%
! ATCTTTCTAACACATTATTG+TGG + Chr4:33388688-33388707 None:intergenic 25.0%
! ATGTAAACTACATATGTGTA+AGG - Chr4:33386015-33386034 MsG0480020072.01.T01:intron 25.0%
! ATTTCACTAATAAAGTTAGC+AGG + Chr4:33389492-33389511 None:intergenic 25.0%
! CATCAATAAAATAGTAAGTG+TGG + Chr4:33388538-33388557 None:intergenic 25.0%
! CTGACTTATAACTAAAAAAC+TGG - Chr4:33386338-33386357 MsG0480020072.01.T01:CDS 25.0%
! GAATTATAAAATTGGACAAC+AGG - Chr4:33386082-33386101 MsG0480020072.01.T01:intron 25.0%
! GTTTAACCAAATTAAGTCTT+TGG - Chr4:33389677-33389696 MsG0480020072.01.T01:intron 25.0%
! TAGTTTATAAATAAGTGGGA+GGG + Chr4:33388076-33388095 None:intergenic 25.0%
! TATTGATCATTCCATTTCAT+CGG + Chr4:33388142-33388161 None:intergenic 25.0%
! TCTTCAATATCTTTATGCAA+TGG + Chr4:33390046-33390065 None:intergenic 25.0%
! TCTTTCTAACACATTATTGT+GGG + Chr4:33388687-33388706 None:intergenic 25.0%
! TTAGTTTATAAATAAGTGGG+AGG + Chr4:33388077-33388096 None:intergenic 25.0%
! TTATCGTTTACATTTCACTT+TGG - Chr4:33388724-33388743 MsG0480020072.01.T01:intron 25.0%
! TTGTGTAAAAAAGAATGAGA+TGG + Chr4:33385437-33385456 None:intergenic 25.0%
! TTTCACTAATAAAGTTAGCA+GGG + Chr4:33389491-33389510 None:intergenic 25.0%
!! ACGTTAAAAAGCAATTTTCA+TGG + Chr4:33386256-33386275 None:intergenic 25.0%
!! ATAAAAGAAGGCACAAAAAA+TGG - Chr4:33389513-33389532 MsG0480020072.01.T01:intron 25.0%
!! CTTTTTCTTTTACAAAATCG+TGG - Chr4:33387758-33387777 MsG0480020072.01.T01:intron 25.0%
!! GTTTTGTCTCAAAAATTTGA+GGG + Chr4:33387351-33387370 None:intergenic 25.0%
!! TCATGAACAATTTGAAATGA+CGG - Chr4:33389560-33389579 MsG0480020072.01.T01:intron 25.0%
!!! AATCAAGTTTTATATTGACC+AGG - Chr4:33389095-33389114 MsG0480020072.01.T01:intron 25.0%
!!! ATCAAGTTTTATATTGACCA+GGG - Chr4:33389096-33389115 MsG0480020072.01.T01:intron 25.0%
!!! CATTCTTTTTTACACAAACA+TGG - Chr4:33385440-33385459 MsG0480020072.01.T01:three_prime_UTR 25.0%
!!! GTTTTTTAGTTATAAGTCAG+CGG + Chr4:33386338-33386357 None:intergenic 25.0%
AAAAACGTTGCATATTGTCA+TGG + Chr4:33385662-33385681 None:intergenic 30.0%
AAAGACTAAAAATTCAGCGA+TGG + Chr4:33386374-33386393 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG - Chr4:33390227-33390246 MsG0480020072.01.T01:intron 30.0%
AAGTTAATAGCTTGAATGTG+AGG + Chr4:33389756-33389775 None:intergenic 30.0%
ACAAGACACAAAAATGACAT+TGG - Chr4:33389425-33389444 MsG0480020072.01.T01:intron 30.0%
AGATAATGTCATATGGGTTT+GGG + Chr4:33387946-33387965 None:intergenic 30.0%
ATAATAGGAATCTTTGACCT+AGG + Chr4:33388990-33389009 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG + Chr4:33390310-33390329 None:intergenic 30.0%
ATTGATCATTCCATTTCATC+GGG + Chr4:33388141-33388160 None:intergenic 30.0%
ATTTGCGAATCCAACATAAT+AGG + Chr4:33389005-33389024 None:intergenic 30.0%
CAGTTGTATAATGTTCAGTT+CGG - Chr4:33385801-33385820 MsG0480020072.01.T01:CDS 30.0%
CATCAACCAAAGACTTAATT+TGG + Chr4:33389686-33389705 None:intergenic 30.0%
CATTACTCTTAAAAGTAGAG+TGG + Chr4:33389313-33389332 None:intergenic 30.0%
CTCAAAAATGTAGACATGTT+TGG + Chr4:33386177-33386196 None:intergenic 30.0%
GAACTGAACATTATACAACT+GGG + Chr4:33385802-33385821 None:intergenic 30.0%
GATATTGAAGAATTGTAGGA+AGG - Chr4:33390055-33390074 MsG0480020072.01.T01:intron 30.0%
GGTTTGATATTAGGTTACTA+TGG - Chr4:33387627-33387646 MsG0480020072.01.T01:intron 30.0%
GTCAAAGATTCCTATTATGT+TGG - Chr4:33388992-33389011 MsG0480020072.01.T01:intron 30.0%
GTCTACCAATAAATCTTGAT+TGG - Chr4:33386037-33386056 MsG0480020072.01.T01:intron 30.0%
TAAATGGTTCATTTCCTTCT+GGG + Chr4:33390130-33390149 None:intergenic 30.0%
TAGATAATGTCATATGGGTT+TGG + Chr4:33387947-33387966 None:intergenic 30.0%
TGCAAAATTCTTTCATGCAA+GGG - Chr4:33385929-33385948 MsG0480020072.01.T01:CDS 30.0%
TGCTTGGACAAATTGAAATA+TGG - Chr4:33389145-33389164 MsG0480020072.01.T01:intron 30.0%
TTAAAAGTAGAGTGGAATCA+GGG + Chr4:33389305-33389324 None:intergenic 30.0%
TTATTGCTGGATACAAAGAT+GGG - Chr4:33389655-33389674 MsG0480020072.01.T01:intron 30.0%
TTATTTAAGTGATGTTCCAG+TGG - Chr4:33385740-33385759 MsG0480020072.01.T01:CDS 30.0%
TTGCAAAATTCTTTCATGCA+AGG - Chr4:33385928-33385947 MsG0480020072.01.T01:CDS 30.0%
TTTAAGAGTAATGAGAGTCA+TGG - Chr4:33389320-33389339 MsG0480020072.01.T01:intron 30.0%
! AAACGGGTGGATTTAAAAAT+AGG + Chr4:33388049-33388068 None:intergenic 30.0%
! AACGGGTGGATTTAAAAATA+GGG + Chr4:33388048-33388067 None:intergenic 30.0%
! ACAATTTGAGTTAAGGATAG+TGG + Chr4:33389258-33389277 None:intergenic 30.0%
! ATGAACAATTTGAAATGACG+GGG - Chr4:33389562-33389581 MsG0480020072.01.T01:intron 30.0%
! ATTAAGTCTTTGGTTGATGT+TGG - Chr4:33389687-33389706 MsG0480020072.01.T01:intron 30.0%
! ATTCTGCACAATTTGAGTTA+AGG + Chr4:33389265-33389284 None:intergenic 30.0%
! ATTTTTAAATCCACCCGTTT+TGG - Chr4:33388049-33388068 MsG0480020072.01.T01:intron 30.0%
! CATGAACAATTTGAAATGAC+GGG - Chr4:33389561-33389580 MsG0480020072.01.T01:intron 30.0%
! CGTTTTGTCTCAAAAATTTG+AGG + Chr4:33387352-33387371 None:intergenic 30.0%
! TAATAGTGTTGAGATTGAGA+AGG - Chr4:33385957-33385976 MsG0480020072.01.T01:intron 30.0%
! TAGTCTTTTCATGTGTTTCT+AGG - Chr4:33386386-33386405 MsG0480020072.01.T01:CDS 30.0%
! TGCTCAATTTTGCAAACAAA+GGG - Chr4:33388894-33388913 MsG0480020072.01.T01:intron 30.0%
! TTGCTCAATTTTGCAAACAA+AGG - Chr4:33388893-33388912 MsG0480020072.01.T01:intron 30.0%
!! CTTTTTACCCTTTTTTACTG+AGG - Chr4:33386851-33386870 MsG0480020072.01.T01:CDS 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG - Chr4:33390400-33390419 MsG0480020072.01.T01:intron 30.0%
!!! ATCTTATTTTCAACCACTCA+TGG - Chr4:33388013-33388032 MsG0480020072.01.T01:intron 30.0%
!!! ATGTCATTTTTGTGTCTTGT+AGG + Chr4:33389425-33389444 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG + Chr4:33390257-33390276 None:intergenic 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG + Chr4:33390256-33390275 None:intergenic 30.0%
AAAATGGCACTGCTTTCTTT+AGG - Chr4:33389529-33389548 MsG0480020072.01.T01:intron 35.0%
AACAGGAAAAGTGATCATTG+TGG - Chr4:33390091-33390110 MsG0480020072.01.T01:intron 35.0%
AAGAAAGAACTGAAGAGAAC+TGG - Chr4:33390204-33390223 MsG0480020072.01.T01:intron 35.0%
ACCTAATATCAAACCCATTG+TGG + Chr4:33387622-33387641 None:intergenic 35.0%
ATAACTAAAAAACTGGCGGT+AGG - Chr4:33386345-33386364 MsG0480020072.01.T01:CDS 35.0%
ATATCTTTAGGTGTTTGCCT+AGG - Chr4:33388970-33388989 MsG0480020072.01.T01:intron 35.0%
ATGGAAGATGATGAGTTTGT+TGG - Chr4:33390321-33390340 MsG0480020072.01.T01:intron 35.0%
ATGTAAATAGCATCAGCACT+AGG + Chr4:33389858-33389877 None:intergenic 35.0%
CAAATTGACACTAATCTCTC+TGG - Chr4:33387503-33387522 MsG0480020072.01.T01:intron 35.0%
CACATTATTGTGGGTCATTT+CGG + Chr4:33388678-33388697 None:intergenic 35.0%
CATCTTCCATGAATTTAGAC+TGG + Chr4:33390311-33390330 None:intergenic 35.0%
CGAACTGAACATTATACAAC+TGG + Chr4:33385803-33385822 None:intergenic 35.0%
CTGAATTGGAACCAAAACAA+AGG - Chr4:33385384-33385403 MsG0480020072.01.T01:three_prime_UTR 35.0%
CTTAAAAGTAGAGTGGAATC+AGG + Chr4:33389306-33389325 None:intergenic 35.0%
GAAGAAGAAGAATCATTGCT+TGG - Chr4:33389129-33389148 MsG0480020072.01.T01:intron 35.0%
GAATTAATTACAGCCACAGT+TGG + Chr4:33385875-33385894 None:intergenic 35.0%
GATCATTGTGGATCATGTAT+TGG - Chr4:33390103-33390122 MsG0480020072.01.T01:intron 35.0%
GCCATAACGGTCTATAATAT+CGG + Chr4:33389232-33389251 None:intergenic 35.0%
GGGTGATACCATCAAAATTA+GGG + Chr4:33389806-33389825 None:intergenic 35.0%
GGTACACTACTCATCATAAA+TGG - Chr4:33386103-33386122 MsG0480020072.01.T01:CDS 35.0%
GGTGATACCATCAAAATTAG+GGG + Chr4:33389805-33389824 None:intergenic 35.0%
GTAAATGGTTCATTTCCTTC+TGG + Chr4:33390131-33390150 None:intergenic 35.0%
GTATAATGTTCAGTTCGGAT+TGG - Chr4:33385806-33385825 MsG0480020072.01.T01:CDS 35.0%
GTTATTGCTGGATACAAAGA+TGG - Chr4:33389654-33389673 MsG0480020072.01.T01:intron 35.0%
TAAAAGTAGAGTGGAATCAG+GGG + Chr4:33389304-33389323 None:intergenic 35.0%
TAGCAGGGTTCAAATGAAAA+GGG + Chr4:33389476-33389495 None:intergenic 35.0%
TCCACACGTGATATGAAAAA+TGG - Chr4:33386445-33386464 MsG0480020072.01.T01:CDS 35.0%
TCCACGAAGAGGTAAAAATA+GGG - Chr4:33388363-33388382 MsG0480020072.01.T01:intron 35.0%
TGAACATTATACAACTGGGA+AGG + Chr4:33385798-33385817 None:intergenic 35.0%
TGACTTTATCTTTGGGTGAA+TGG - Chr4:33389991-33390010 MsG0480020072.01.T01:intron 35.0%
TGATTCTCTAGCAACAACAT+TGG + Chr4:33389453-33389472 None:intergenic 35.0%
TGGGTGATACCATCAAAATT+AGG + Chr4:33389807-33389826 None:intergenic 35.0%
TGGTGACACTCTTCAAAATA+TGG - Chr4:33389959-33389978 MsG0480020072.01.T01:intron 35.0%
TTAGCAGGGTTCAAATGAAA+AGG + Chr4:33389477-33389496 None:intergenic 35.0%
TTCCACGAAGAGGTAAAAAT+AGG - Chr4:33388362-33388381 MsG0480020072.01.T01:intron 35.0%
! AATGAGATGGTTTCAAGTGA+GGG + Chr4:33385424-33385443 None:intergenic 35.0%
! ACCACAATGGGTTTGATATT+AGG - Chr4:33387618-33387637 MsG0480020072.01.T01:intron 35.0%
! ACTTTGGAGACATCAAGAAA+AGG - Chr4:33388740-33388759 MsG0480020072.01.T01:intron 35.0%
! GCTCAATTTTGCAAACAAAG+GGG - Chr4:33388895-33388914 MsG0480020072.01.T01:intron 35.0%
! TGCTGATGCTATTTACATGA+AGG - Chr4:33389860-33389879 MsG0480020072.01.T01:intron 35.0%
!! ATCACTTTTCCTGTTTTCTC+TGG + Chr4:33390086-33390105 None:intergenic 35.0%
!! TAACTTTGATTTGCCTCATG+TGG - Chr4:33389770-33389789 MsG0480020072.01.T01:intron 35.0%
!! TACAATGACTTGTTCAACCA+AGG - Chr4:33389597-33389616 MsG0480020072.01.T01:intron 35.0%
!! TCCATTTTTCATATCACGTG+TGG + Chr4:33386449-33386468 None:intergenic 35.0%
!!! CTTTGTTTTGGTTCCAATTC+AGG + Chr4:33385386-33385405 None:intergenic 35.0%
!!! TGGAATCTTTTTTCCAACTG+TGG - Chr4:33385859-33385878 MsG0480020072.01.T01:CDS 35.0%
AAACATGTCTCCTCCAACAT+GGG + Chr4:33389826-33389845 None:intergenic 40.0%
AAAGGGGAATAAACAGTGTC+TGG - Chr4:33388911-33388930 MsG0480020072.01.T01:intron 40.0%
AAGGCAATACCAGAGAAAAC+AGG - Chr4:33390074-33390093 MsG0480020072.01.T01:intron 40.0%
AATGAACCATTTACCGACAC+TGG - Chr4:33390137-33390156 MsG0480020072.01.T01:intron 40.0%
ACTGCTTTCTTTAGGTGTCA+TGG - Chr4:33389537-33389556 MsG0480020072.01.T01:intron 40.0%
ACTTGTGCACATTAGACTTG+TGG + Chr4:33386908-33386927 None:intergenic 40.0%
AGCGGTATTTACTACAGTTG+AGG + Chr4:33386320-33386339 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG - Chr4:33390477-33390496 MsG0480020072.01.T01:intron 40.0%
AGGGAGATAAAATCCATGAG+TGG + Chr4:33388029-33388048 None:intergenic 40.0%
ATGAACCATTTACCGACACT+GGG - Chr4:33390138-33390157 MsG0480020072.01.T01:intron 40.0%
ATGAGTCCACCACTATATGT+GGG - Chr4:33388638-33388657 MsG0480020072.01.T01:intron 40.0%
ATTATACAACTGGGAAGGCA+GGG + Chr4:33385793-33385812 None:intergenic 40.0%
CACGAAGAGGTAAAAATAGG+GGG - Chr4:33388365-33388384 MsG0480020072.01.T01:intron 40.0%
CATAAATGGCTCCACTTATG+TGG - Chr4:33386117-33386136 MsG0480020072.01.T01:CDS 40.0%
CCACGAAGAGGTAAAAATAG+GGG - Chr4:33388364-33388383 MsG0480020072.01.T01:intron 40.0%
CTAGCTATGATTCATGCATG+GGG - Chr4:33390479-33390498 MsG0480020072.01.T01:CDS 40.0%
GAAAGATCAATTCCACGAAG+AGG - Chr4:33388352-33388371 MsG0480020072.01.T01:intron 40.0%
GATACCATCAAAATTAGGGG+CGG + Chr4:33389802-33389821 None:intergenic 40.0%
GCATTCCCAGTCTAAATTCA+TGG - Chr4:33390302-33390321 MsG0480020072.01.T01:intron 40.0%
GCCGATATTATAGACCGTTA+TGG - Chr4:33389228-33389247 MsG0480020072.01.T01:intron 40.0%
GCGGTATTTACTACAGTTGA+GGG + Chr4:33386319-33386338 None:intergenic 40.0%
GCTAGCTATGATTCATGCAT+GGG - Chr4:33390478-33390497 MsG0480020072.01.T01:intron 40.0%
TAGCTATGATTCATGCATGG+GGG - Chr4:33390480-33390499 MsG0480020072.01.T01:CDS 40.0%
TATGAGTCCACCACTATATG+TGG - Chr4:33388637-33388656 MsG0480020072.01.T01:intron 40.0%
TCTATATCTACGCACCTTGA+AGG + Chr4:33385499-33385518 None:intergenic 40.0%
TGACATACAACCCGATGAAA+TGG - Chr4:33388128-33388147 MsG0480020072.01.T01:intron 40.0%
TTCGTATGTGTTGTGTTGTG+TGG - Chr4:33390373-33390392 MsG0480020072.01.T01:intron 40.0%
TTGGGAAACTCATCAGGAAA+TGG - Chr4:33385839-33385858 MsG0480020072.01.T01:CDS 40.0%
! AAGTCTTTGGTTGATGTTGG+TGG - Chr4:33389690-33389709 MsG0480020072.01.T01:intron 40.0%
! ACAATTTGAAATGACGGGGT+TGG - Chr4:33389566-33389585 MsG0480020072.01.T01:intron 40.0%
! AGGATAGTGGTTTGCCATAA+CGG + Chr4:33389245-33389264 None:intergenic 40.0%
! AGTCTTTGGTTGATGTTGGT+GGG - Chr4:33389691-33389710 MsG0480020072.01.T01:intron 40.0%
! ATGAGATGGTTTCAAGTGAG+GGG + Chr4:33385423-33385442 None:intergenic 40.0%
! CATGAATCATAGCTAGCTCT+AGG + Chr4:33390475-33390494 None:intergenic 40.0%
! CTCTTAGCATGTTGATTAGC+CGG - Chr4:33387725-33387744 MsG0480020072.01.T01:intron 40.0%
! GAATGAGATGGTTTCAAGTG+AGG + Chr4:33385425-33385444 None:intergenic 40.0%
! TGATGTTCCAGTGGCTTTTA+TGG - Chr4:33385749-33385768 MsG0480020072.01.T01:CDS 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG - Chr4:33390383-33390402 MsG0480020072.01.T01:intron 40.0%
! TTTGATGGTATCACCCATGT+TGG - Chr4:33389810-33389829 MsG0480020072.01.T01:intron 40.0%
!! AGGGAAGAAAGCCTTTGTTT+TGG + Chr4:33385398-33385417 None:intergenic 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG - Chr4:33389602-33389621 MsG0480020072.01.T01:intron 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG - Chr4:33389194-33389213 MsG0480020072.01.T01:intron 40.0%
ACCACTATATGTGGGACTCA+TGG - Chr4:33388646-33388665 MsG0480020072.01.T01:intron 45.0%
ACCATGAGTCCCACATATAG+TGG + Chr4:33388650-33388669 None:intergenic 45.0%
ACTGCTATCTGATCTGCTGA+TGG + Chr4:33390519-33390538 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG - Chr4:33390481-33390500 MsG0480020072.01.T01:CDS 45.0%
ATAAGTGGGAGGGACCAAAA+CGG + Chr4:33388066-33388085 None:intergenic 45.0%
ATGAGTCCCACATATAGTGG+TGG + Chr4:33388647-33388666 None:intergenic 45.0%
ATGGCTCCACTTATGTGGTT+TGG - Chr4:33386122-33386141 MsG0480020072.01.T01:CDS 45.0%
CAAACATGTCTCCTCCAACA+TGG + Chr4:33389827-33389846 None:intergenic 45.0%
CATTATACAACTGGGAAGGC+AGG + Chr4:33385794-33385813 None:intergenic 45.0%
GAAACCGGGGAAATTCTCTA+CGG - Chr4:33389375-33389394 MsG0480020072.01.T01:intron 45.0%
GATCATGTATTGGACCCAGA+AGG - Chr4:33390113-33390132 MsG0480020072.01.T01:intron 45.0%
GCTTGACACGTGCATCAAAA+TGG - Chr4:33389397-33389416 MsG0480020072.01.T01:intron 45.0%
GTCAAATGCTATCCCAGTGT+CGG + Chr4:33390153-33390172 None:intergenic 45.0%
GTGTCTCCAAACCACATAAG+TGG + Chr4:33386131-33386150 None:intergenic 45.0%
TAGAGAATTTCCCCGGTTTC+TGG + Chr4:33389375-33389394 None:intergenic 45.0%
TATCTTTGGGTGAATGGCAG+TGG - Chr4:33389997-33390016 MsG0480020072.01.T01:intron 45.0%
TGGAGTTTGGGAAACTCATC+AGG - Chr4:33385833-33385852 MsG0480020072.01.T01:CDS 45.0%
TTACTAATGTTGTGCGTCGC+AGG - Chr4:33387907-33387926 MsG0480020072.01.T01:intron 45.0%
! ATGTTGCTTGCTCACAATGC+TGG - Chr4:33390176-33390195 MsG0480020072.01.T01:intron 45.0%
! CGGATTGGACTATGGAGTTT+GGG - Chr4:33385821-33385840 MsG0480020072.01.T01:CDS 45.0%
! GACTTGTGGTGCTAACTCAA+TGG + Chr4:33386894-33386913 None:intergenic 45.0%
! GGCAGTGGATTCTTCATGAT+TGG - Chr4:33390012-33390031 MsG0480020072.01.T01:intron 45.0%
! GTCTTTGGTTGATGTTGGTG+GGG - Chr4:33389692-33389711 MsG0480020072.01.T01:intron 45.0%
! GTGGTTTGGAGACACACTAA+CGG - Chr4:33386136-33386155 MsG0480020072.01.T01:CDS 45.0%
! GTTCAGTTCGGATTGGACTA+TGG - Chr4:33385813-33385832 MsG0480020072.01.T01:CDS 45.0%
! TCAACCGCCCCTAATTTTGA+TGG - Chr4:33389795-33389814 MsG0480020072.01.T01:intron 45.0%
! TCGGATTGGACTATGGAGTT+TGG - Chr4:33385820-33385839 MsG0480020072.01.T01:CDS 45.0%
! TCTTTGGTTGATGTTGGTGG+GGG - Chr4:33389693-33389712 MsG0480020072.01.T01:intron 45.0%
!! GAATCATAGCTAGCTCTAGG+TGG + Chr4:33390472-33390491 None:intergenic 45.0%
!!! CCCCTATTTTTACCTCTTCG+TGG + Chr4:33388367-33388386 None:intergenic 45.0%
!! ATTAATTTATGATAAAAAAA+AGG + Chr4:33388429-33388448 None:intergenic 5.0%
AGCCCTCGACACAATTCTAG+CGG + Chr4:33389634-33389653 None:intergenic 50.0%
AGTAGAGTGGAATCAGGGGA+AGG + Chr4:33389300-33389319 None:intergenic 50.0%
CAAGCCGTAGAGAATTTCCC+CGG + Chr4:33389382-33389401 None:intergenic 50.0%
CACCGCTAGAATTGTGTCGA+GGG - Chr4:33389629-33389648 MsG0480020072.01.T01:intron 50.0%
GATGGTATCACCCATGTTGG+AGG - Chr4:33389813-33389832 MsG0480020072.01.T01:intron 50.0%
GGGAATGCCTCAATGATGCA+TGG + Chr4:33390290-33390309 None:intergenic 50.0%
TAAGTGGGAGGGACCAAAAC+GGG + Chr4:33388065-33388084 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG + Chr4:33389617-33389636 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG - Chr4:33390484-33390503 MsG0480020072.01.T01:CDS 50.0%
TATTGACCAGGGTGTGAGCA+AGG - Chr4:33389107-33389126 MsG0480020072.01.T01:intron 50.0%
TGCTCTGCCATGCATCATTG+AGG - Chr4:33390280-33390299 MsG0480020072.01.T01:intron 50.0%
TTGCTTGCTCACAATGCTGG+TGG - Chr4:33390179-33390198 MsG0480020072.01.T01:intron 50.0%
! ATGGTTTCAAGTGAGGGGTG+AGG + Chr4:33385418-33385437 None:intergenic 50.0%
! GGAGACACACTAACGGATCA+TGG - Chr4:33386143-33386162 MsG0480020072.01.T01:CDS 50.0%
! GTTGATGTTGGTGGGGGTAT+CGG - Chr4:33389699-33389718 MsG0480020072.01.T01:intron 50.0%
! TGGGAAGGCAGGGTTAGTAT+TGG + Chr4:33385783-33385802 None:intergenic 50.0%
! TGGTTTCAAGTGAGGGGTGA+GGG + Chr4:33385417-33385436 None:intergenic 50.0%
!! CAGGGTTAGTATTGGTCCAG+TGG + Chr4:33385775-33385794 None:intergenic 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG + Chr4:33390146-33390165 None:intergenic 50.0%
CCAGTGGCCATAAAAGCCAC+TGG + Chr4:33385759-33385778 None:intergenic 55.0%
CTACGCACCTTGAAGGCAGA+AGG + Chr4:33385492-33385511 None:intergenic 55.0%
CTCACCACCTTCTGCCTTCA+AGG - Chr4:33385482-33385501 MsG0480020072.01.T01:three_prime_UTR 55.0%
CTTCTTCCTTGCTCACACCC+TGG + Chr4:33389116-33389135 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+AGG - Chr4:33389628-33389647 MsG0480020072.01.T01:intron 55.0%
GGCAGAAGGTGGTGAGTGTT+TGG + Chr4:33385478-33385497 None:intergenic 55.0%
GTGTCGAGGGCTGTTATTGC+TGG - Chr4:33389642-33389661 MsG0480020072.01.T01:intron 55.0%
! CCAGTGGCTTTTATGGCCAC+TGG - Chr4:33385756-33385775 MsG0480020072.01.T01:CDS 55.0%
!! GGGTATCGGAGGATCTCTCT+CGG - Chr4:33389713-33389732 MsG0480020072.01.T01:intron 55.0%
CGCACCTTGAAGGCAGAAGG+TGG + Chr4:33385489-33385508 None:intergenic 60.0%
GGGGCGGTTGAAACCACATG+AGG + Chr4:33389786-33389805 None:intergenic 60.0%
! CATGCATGGGGGGAGGCTTT+TGG - Chr4:33390491-33390510 MsG0480020072.01.T01:CDS 60.0%
!! GATGTTGGTGGGGGTATCGG+AGG - Chr4:33389702-33389721 MsG0480020072.01.T01:intron 60.0%
GTGGGAGGGACCAAAACGGG+TGG + Chr4:33388062-33388081 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 33385373 33390609 33385373 ID=MsG0480020072.01;Name=MsG0480020072.01
Chr4 mRNA 33385373 33390609 33385373 ID=MsG0480020072.01.T01;Parent=MsG0480020072.01;Name=MsG0480020072.01.T01;_AED=0.50;_eAED=0.50;_QI=86|0.5|0.66|1|0.5|0.33|3|293|381
Chr4 exon 33390479 33390609 33390479 ID=MsG0480020072.01.T01:exon:4454;Parent=MsG0480020072.01.T01
Chr4 exon 33386101 33386901 33386101 ID=MsG0480020072.01.T01:exon:4455;Parent=MsG0480020072.01.T01
Chr4 exon 33385373 33385965 33385373 ID=MsG0480020072.01.T01:exon:4456;Parent=MsG0480020072.01.T01
Chr4 five_prime_UTR 33390524 33390609 33390524 ID=MsG0480020072.01.T01:five_prime_utr;Parent=MsG0480020072.01.T01
Chr4 CDS 33390479 33390523 33390479 ID=MsG0480020072.01.T01:cds;Parent=MsG0480020072.01.T01
Chr4 CDS 33386101 33386901 33386101 ID=MsG0480020072.01.T01:cds;Parent=MsG0480020072.01.T01
Chr4 CDS 33385666 33385965 33385666 ID=MsG0480020072.01.T01:cds;Parent=MsG0480020072.01.T01
Chr4 three_prime_UTR 33385373 33385665 33385373 ID=MsG0480020072.01.T01:three_prime_utr;Parent=MsG0480020072.01.T01
Gene Sequence

>MsG0480020072.01.T01

ATGGAGACTGTTCTTTCCAAACACTCACCACCTTCTGCCTTCAAGTCCATCCTATTATTAATCAAGTTTTATATTGACCAGGGTGTGAGCAAGGAAGAAGAAGAATCATTGCTTGGACAAATTGAAATATGGAAATACATGACACAATTCACAGACTCTTTTGCTCTAAAAGCTGTCGTGGAGCTACGCATAGCCGATATTATAGACCGTTATGGCAAACCACTATCCTTAACTCAAATTGTGCAGAATCTTGAAGATGCACCTTCCCCTGATTCCACTCTACTTTTAAGAGTAATGAGAGTCATGGTTCGTAGAAAGATTTTCAGTGCAGAAAAATCAGAAACCGGGGAAATTCTCTACGGCTTGACACGTGCATCAAAATGGATCCTACAAGACACAAAAATGACATTGGCACCAATGTTGTTGCTAGAGAATCACCCTTTTCATTTGAACCCTGCTAACTTTATTAGTGAAATTATAAAAGAAGGCACAAAAAATGGCACTGCTTTCTTTAGGTGTCATGGTCATGAACAATTTGAAATGACGGGGTTGGACTCGAAATACAATGACTTGTTCAACCAAGGTATGGTTTGCACCGCTAGAATTGTGTCGAGGGCTGTTATTGCTGGATACAAAGATGGGTTTAACCAAATTAAGTCTTTGGTTGATGTTGGTGGGGGTATCGGAGGATCTCTCTCGGAGATTGTTAGAGCTTATCCTCACATTCAAGCTATTAACTTTGATTTGCCTCATGTGGTTTCAACCGCCCCTAATTTTGATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCAGTTCCTAGTGCTGATGCTATTTACATGAAGTGGATTCTTCATGATTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGGAAGGCAATACCAGAGAAAACAGGAAAAGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAATGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA

Protein sequence

>MsG0480020072.01.T01

METVLSKHSPPSAFKSILLLIKFYIDQGVSKEEEESLLGQIEIWKYMTQFTDSFALKAVVELRIADIIDRYGKPLSLTQIVQNLEDAPSPDSTLLLRVMRVMVRRKIFSAEKSETGEILYGLTRASKWILQDTKMTLAPMLLLENHPFHLNPANFISEIIKEGTKNGTAFFRCHGHEQFEMTGLDSKYNDLFNQGMVCTARIVSRAVIAGYKDGFNQIKSLVDVGGGIGGSLSEIVRAYPHIQAINFDLPHVVSTAPNFDGITHVGGDMFVSVPSADAIYMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV*