AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017056.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017056.01.T01 MTR_3g100150 93.793 435 27 0 1 435 1 435 0.0 847
MsG0380017056.01.T01 MTR_1g035890 78.539 438 89 2 1 436 1 435 0.0 712
MsG0380017056.01.T01 MTR_2g036780 76.749 443 97 3 1 440 1 440 0.0 700
MsG0380017056.01.T01 MTR_8g081600 33.088 272 164 7 163 428 1 260 5.32e-41 147
MsG0380017056.01.T01 MTR_8g081480 47.328 131 67 2 15 144 16 145 4.50e-31 117
MsG0380017056.01.T01 MTR_1g011660 24.146 439 279 15 20 424 13 431 6.30e-20 92.0
MsG0380017056.01.T01 MTR_8g096530 27.049 244 153 6 46 275 39 271 2.13e-16 81.3
MsG0380017056.01.T01 MTR_8g079970 23.308 266 189 8 18 278 10 265 2.23e-14 75.1
MsG0380017056.01.T01 MTR_2g064495 22.662 278 183 9 17 278 8 269 1.45e-12 69.7
MsG0380017056.01.T01 MTR_4g007540 24.453 274 186 11 15 277 6 269 1.58e-12 69.3
MsG0380017056.01.T01 MTR_3g026950 25.979 281 176 9 18 277 9 278 2.28e-12 68.9
MsG0380017056.01.T01 MTR_2g105330 23.897 272 184 10 18 278 10 269 4.52e-12 68.2
MsG0380017056.01.T01 MTR_4g127650 23.445 418 242 18 61 431 69 455 4.73e-12 68.2
MsG0380017056.01.T01 MTR_8g079950 27.439 164 111 4 18 177 10 169 7.50e-12 67.4
MsG0380017056.01.T01 MTR_5g084850 25.000 164 115 4 18 177 10 169 1.29e-11 66.6
MsG0380017056.01.T01 MTR_7g086000 25.237 317 194 13 15 303 8 309 1.83e-11 66.2
MsG0380017056.01.T01 MTR_3g098980 25.833 240 152 9 46 271 46 273 2.37e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017056.01.T01 AT4G24510 40.783 434 221 14 7 425 1 413 7.60e-98 300
MsG0380017056.01.T01 AT4G13840 36.047 430 250 10 8 430 11 422 6.47e-91 282
MsG0380017056.01.T01 AT3G23840 36.111 432 243 11 10 437 11 413 1.35e-89 278
MsG0380017056.01.T01 AT4G29250 23.256 430 283 17 20 419 22 434 5.87e-14 73.9
MsG0380017056.01.T01 AT3G48720 25.329 304 196 12 29 313 25 316 1.22e-13 72.8
MsG0380017056.01.T01 AT5G48930 22.462 325 196 10 15 317 6 296 1.90e-13 72.4
MsG0380017056.01.T01 AT2G19070 23.885 314 202 11 11 301 3 302 1.52e-12 69.7
MsG0380017056.01.T01 AT1G65450 23.128 454 290 21 7 425 13 442 3.46e-12 68.6
MsG0380017056.01.T01 AT1G32910 24.190 401 245 15 60 421 59 439 5.36e-12 67.8
MsG0380017056.01.T01 AT1G27620 22.943 401 267 15 46 425 43 422 2.72e-11 65.9
MsG0380017056.01.T01 AT5G63560 24.597 248 156 11 46 278 41 272 7.98e-11 64.3

Find 103 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATCCCATTTCCATTAAA+AGG 0.125824 3:+91394283 MsG0380017056.01.T01:CDS
AATGGGTTCACTACCTAATT+TGG 0.146863 3:+91392443 MsG0380017056.01.T01:exon
CTCGTCTCTTTCTCTTTATT+CGG 0.215633 3:+91392419 MsG0380017056.01.T01:five_prime_UTR
CTTTGTCTTGGTATTGATAT+TGG 0.233450 3:-91394424 None:intergenic
CGGTTGAAATTCTTGAAGTT+TGG 0.237541 3:-91392476 None:intergenic
TAAAGGGCAGAAACCGATTT+TGG 0.239229 3:+91394788 MsG0380017056.01.T01:CDS
TTATTACCATTGTCATCTTC+TGG 0.251400 3:-91394867 None:intergenic
GATTCATACTCACATGTTTC+AGG 0.254132 3:+91392663 MsG0380017056.01.T01:CDS
GGACAAATAAGAGGAGATTT+TGG 0.254623 3:+91394486 MsG0380017056.01.T01:CDS
TCTTTCTCTTTATTCGGAAA+TGG 0.266605 3:+91392425 MsG0380017056.01.T01:exon
TGGGGAGGAGTTTCCAAATT+AGG 0.268890 3:-91392456 None:intergenic
TTTGGCATGTGAAGAGATTT+TGG 0.279640 3:-91394222 None:intergenic
TTAATATTGATTGTGTTATA+AGG 0.285270 3:+91395061 MsG0380017056.01.T01:three_prime_UTR
CCACATGGTGCTATTATATA+AGG 0.291959 3:+91395029 MsG0380017056.01.T01:three_prime_UTR
AACTGAGGTTTAGTGAGATT+TGG 0.304675 3:-91394240 None:intergenic
AAAGTTAACATTTGTAGATT+TGG 0.305013 3:+91394737 MsG0380017056.01.T01:CDS
GGTTGAAATTCTTGAAGTTT+GGG 0.305408 3:-91392475 None:intergenic
TTAGCAAATCCATGTAGTTT+AGG 0.306387 3:-91392542 None:intergenic
AAATTATTTCAGCTATGATT+TGG 0.308886 3:+91394454 MsG0380017056.01.T01:CDS
GATATTGGTATTGGTTGATA+TGG 0.311739 3:-91394409 None:intergenic
GGGGTCTAATTAACTATGTT+TGG 0.326463 3:+91394999 MsG0380017056.01.T01:three_prime_UTR
GTGTTATAAGGAATGTAAAA+TGG 0.328407 3:+91395073 MsG0380017056.01.T01:three_prime_UTR
CTTGGTATTGATATTGGTAT+TGG 0.335050 3:-91394418 None:intergenic
CGAGTCTTGGACTTTGTTAA+GGG 0.335519 3:+91394979 MsG0380017056.01.T01:CDS
CTTTCTCTTTATTCGGAAAT+GGG 0.337632 3:+91392426 MsG0380017056.01.T01:exon
AAATCACAATTTGCCAAAAT+CGG 0.338748 3:-91394801 None:intergenic
TTCCAAACAACTTCATCATT+TGG 0.339654 3:+91394377 MsG0380017056.01.T01:CDS
TTTAGAATTGAATAAGTATA+TGG 0.345472 3:-91392586 None:intergenic
CTGAGCTGGGCTCACATTCT+TGG 0.349530 3:+91394135 MsG0380017056.01.T01:CDS
GAAGATGACAATGGTAATAA+TGG 0.356828 3:+91394870 MsG0380017056.01.T01:CDS
CAACAACTGTTGAAGAATAT+TGG 0.364639 3:+91394307 MsG0380017056.01.T01:CDS
TCGAGTCTTGGACTTTGTTA+AGG 0.367163 3:+91394978 MsG0380017056.01.T01:CDS
AATTTGAAAGTATGGTAGTT+TGG 0.368263 3:-91392380 None:intergenic
TCTTCACCACGAGGGGTTGC+TGG 0.369933 3:-91392504 None:intergenic
GACTATCCGTGGGACTGAGC+TGG 0.378652 3:+91394121 MsG0380017056.01.T01:CDS
GCTATGATTTGGAAATGTAT+AGG 0.393101 3:+91394465 MsG0380017056.01.T01:CDS
TTTATGGGATAAAGATTAAA+GGG 0.393168 3:+91394772 MsG0380017056.01.T01:CDS
ATACAATATTGTTCGAGTCT+TGG 0.400828 3:+91394966 MsG0380017056.01.T01:CDS
TTAATTAGAAAATTATTGTA+TGG 0.401234 3:+91395108 MsG0380017056.01.T01:three_prime_UTR
TGGAATGGTATTTAACTTGT+TGG 0.405673 3:-91395216 None:intergenic
GGGTGATCAAGGTGTTGTTT+TGG 0.424320 3:+91394833 MsG0380017056.01.T01:CDS
TACCAAATGATGAAGTTGTT+TGG 0.426548 3:-91394379 None:intergenic
ACGAGGGGTTGCTGGAACTA+CGG 0.428143 3:-91392496 None:intergenic
GTGCTAGTTTACATTTCAGT+TGG 0.430768 3:-91394932 None:intergenic
AGGGTTAGAATATCAGAATC+AGG 0.434770 3:+91392687 MsG0380017056.01.T01:CDS
CCATTGTCATCTTCTGGTCC+TGG 0.436805 3:-91394861 None:intergenic
TTGGAATTGCATGTTTGAAT+TGG 0.441407 3:+91395189 MsG0380017056.01.T01:three_prime_UTR
AATGTAAACTAGCACAAGAA+TGG 0.442197 3:+91394940 MsG0380017056.01.T01:CDS
TAATCCCATTTCCATTAAAA+GGG 0.449982 3:+91394284 MsG0380017056.01.T01:CDS
GAAAATGAATTCCCGACAAA+TGG 0.454250 3:+91394555 MsG0380017056.01.T01:CDS
CTCAACACCGAGCCATTTGT+CGG 0.462606 3:-91394567 None:intergenic
ATGGTAACAATTTCTTTACC+TGG 0.475074 3:+91394897 MsG0380017056.01.T01:CDS
AGTATATGGATCGGATATAG+TGG 0.480043 3:-91392572 None:intergenic
AATTTCAAAATACTTTGTCT+TGG 0.480369 3:-91394436 None:intergenic
TCTACAAGTGCTCATAAGCT+TGG 0.485522 3:+91395170 MsG0380017056.01.T01:three_prime_UTR
GCGTCGTTGCACTTGATAAA+CGG 0.488922 3:-91392714 None:intergenic
ATGTAAACTAGCACAAGAAT+GGG 0.492269 3:+91394941 MsG0380017056.01.T01:CDS
TTTCGAGGTGTGGGTGATCA+AGG 0.495403 3:+91394822 MsG0380017056.01.T01:CDS
ATTATTGTAATTGTAAAGAG+TGG 0.497996 3:-91395236 None:intergenic
CAATGGTAATAATGGAAGGA+TGG 0.498640 3:+91394878 MsG0380017056.01.T01:CDS
AGTTGGTCAAGTTCTTTCCC+AGG 0.509452 3:-91394915 None:intergenic
ATCGAAACAAGTTTACCTCC+TGG 0.511391 3:+91394594 MsG0380017056.01.T01:CDS
ACTATCCGTGGGACTGAGCT+GGG 0.514770 3:+91394122 MsG0380017056.01.T01:CDS
CATACTCACATGTTTCAGGT+AGG 0.517432 3:+91392667 MsG0380017056.01.T01:CDS
TCAACACCGAGCCATTTGTC+GGG 0.518341 3:-91394566 None:intergenic
TAGTTCACATTCTTCAAATG+TGG 0.529855 3:+91394096 MsG0380017056.01.T01:intron
TCTGATATATTAGATTCTCC+AGG 0.530313 3:-91394612 None:intergenic
GCGAGAAAACGCTGCGTGAA+TGG 0.530466 3:+91392763 MsG0380017056.01.T01:CDS
ATACTCACATGTTTCAGGTA+GGG 0.532854 3:+91392668 MsG0380017056.01.T01:CDS
AATGAATGAGAATCATGCAT+TGG 0.533438 3:+91394662 MsG0380017056.01.T01:CDS
GAAAACGCTGCGTGAATGGT+TGG 0.535685 3:+91392767 MsG0380017056.01.T01:CDS
AGCTAGTGTGTGACTCCACT+TGG 0.536358 3:-91394187 None:intergenic
AAGTGGAGTCACACACTAGC+TGG 0.545603 3:+91394189 MsG0380017056.01.T01:CDS
TGGTAACAATTTCTTTACCT+GGG 0.546017 3:+91394898 MsG0380017056.01.T01:CDS
CTTGTATATGATCATGTGCT+TGG 0.551161 3:+91392816 MsG0380017056.01.T01:CDS
ATAGAATTTGATAAGAACTG+AGG 0.563805 3:-91394255 None:intergenic
ATGACAATGGTAATAATGGA+AGG 0.564844 3:+91394874 MsG0380017056.01.T01:CDS
ATACTTATTCAATTCTAAAG+CGG 0.570391 3:+91392590 MsG0380017056.01.T01:CDS
AAAGAGAAAGAGACGAGAGA+AGG 0.576901 3:-91392413 None:intergenic
TGTAATTGTAAAGAGTGGAA+TGG 0.577847 3:-91395231 None:intergenic
TTCACATTCTTCAAATGTGG+AGG 0.578555 3:+91394099 MsG0380017056.01.T01:CDS
GAATCAAGTAGTGGAAACAT+TGG 0.583620 3:-91392645 None:intergenic
AAATGTATAGGACAAATAAG+AGG 0.585230 3:+91394477 MsG0380017056.01.T01:CDS
GTTGAAATTCTTGAAGTTTG+GGG 0.589535 3:-91392474 None:intergenic
TGCATATAACCTAAACTACA+TGG 0.592000 3:+91392533 MsG0380017056.01.T01:CDS
GTACATATCGTCACAACCCT+AGG 0.594537 3:-91394510 None:intergenic
TGAATTCCCGACAAATGGCT+CGG 0.606392 3:+91394560 MsG0380017056.01.T01:CDS
GAAATTCTTGAAGTTTGGGG+AGG 0.607791 3:-91392471 None:intergenic
GAGTCTTGGACTTTGTTAAG+GGG 0.617199 3:+91394980 MsG0380017056.01.T01:exon
GTGAGCCCAGCTCAGTCCCA+CGG 0.619598 3:-91394127 None:intergenic
CAAATGTGGAGGACTATCCG+TGG 0.627456 3:+91394110 MsG0380017056.01.T01:CDS
AATTGAATAAGTATATGGAT+CGG 0.632663 3:-91392581 None:intergenic
AAATGTGGAGGACTATCCGT+GGG 0.635013 3:+91394111 MsG0380017056.01.T01:CDS
TGTGAGTATGAATCAAGTAG+TGG 0.635337 3:-91392654 None:intergenic
AGTAGCTACATAACTATCAG+TGG 0.654612 3:-91394337 None:intergenic
AAAATGATGGAGGAAGGTGA+AGG 0.654901 3:+91394687 MsG0380017056.01.T01:CDS
GATATATTAGATTCTCCAGG+AGG 0.665656 3:-91394609 None:intergenic
TATCAAGTGCAACGACGCGG+AGG 0.692331 3:+91392719 MsG0380017056.01.T01:CDS
ATGTTTGGTATATCTCCACA+TGG 0.692491 3:+91395014 MsG0380017056.01.T01:three_prime_UTR
GTAGTTCCAGCAACCCCTCG+TGG 0.703084 3:+91392498 MsG0380017056.01.T01:CDS
CCAGGACCAGAAGATGACAA+TGG 0.706189 3:+91394861 MsG0380017056.01.T01:CDS
CCTTATATAATAGCACCATG+TGG 0.725256 3:-91395029 None:intergenic
GTTTATCAAGTGCAACGACG+CGG 0.730541 3:+91392716 MsG0380017056.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAGAAAATTATTGTA+TGG + Chr3:91395108-91395127 MsG0380017056.01.T01:three_prime_UTR 10.0%
!!! AACAAAATTAGTTTTTTTTT+AGG - Chr3:91393223-91393242 None:intergenic 10.0%
!!! AATGGTTATATTTTTTTTAT+TGG - Chr3:91394037-91394056 None:intergenic 10.0%
!!! ACAAAATTAGTTTTTTTTTA+GGG - Chr3:91393222-91393241 None:intergenic 10.0%
!!! ATAAATATTACTAATTTTGT+TGG + Chr3:91393191-91393210 MsG0380017056.01.T01:intron 10.0%
!!! TGTTATTTTTTTTTTTTTGA+AGG + Chr3:91395287-91395306 MsG0380017056.01.T01:three_prime_UTR 10.0%
!!! TTATATTTTTTTTATTGGAA+CGG - Chr3:91394032-91394051 None:intergenic 10.0%
!!! TTTTATGTTTCTTTTTATTA+GGG - Chr3:91393408-91393427 None:intergenic 10.0%
!!! TTTTGTTCTAATTTAAAAAA+CGG + Chr3:91393379-91393398 MsG0380017056.01.T01:intron 10.0%
!!! TTTTTATGTTTCTTTTTATT+AGG - Chr3:91393409-91393428 None:intergenic 10.0%
!! TCTCGATTATAATTTAAAAA+TGG - Chr3:91393338-91393357 None:intergenic 15.0%
!! TTTGTTCTAATTTAAAAAAC+GGG + Chr3:91393380-91393399 MsG0380017056.01.T01:intron 15.0%
!!! AAAGATGATTTTATTGTTTA+TGG + Chr3:91394711-91394730 MsG0380017056.01.T01:CDS 15.0%
!!! ATAAATTTTCTTTATTTGTG+TGG + Chr3:91393937-91393956 MsG0380017056.01.T01:intron 15.0%
!!! ATCGATTTTTTTTTTTTACA+AGG - Chr3:91393536-91393555 None:intergenic 15.0%
!!! ATTTTCATTTTCTTTAAATC+CGG - Chr3:91393794-91393813 None:intergenic 15.0%
!!! TTAATATTGATTGTGTTATA+AGG + Chr3:91395061-91395080 MsG0380017056.01.T01:three_prime_UTR 15.0%
!!! TTTAGAATTGAATAAGTATA+TGG - Chr3:91392589-91392608 None:intergenic 15.0%
!!! TTTCTTTTTTCAAATAGTTT+AGG + Chr3:91395141-91395160 MsG0380017056.01.T01:three_prime_UTR 15.0%
!! AAAGTTAACATTTGTAGATT+TGG + Chr3:91394737-91394756 MsG0380017056.01.T01:CDS 20.0%
!! AAATTATTTCAGCTATGATT+TGG + Chr3:91394454-91394473 MsG0380017056.01.T01:CDS 20.0%
!! AATTGAATAAGTATATGGAT+CGG - Chr3:91392584-91392603 None:intergenic 20.0%
!! AATTTCAAAATACTTTGTCT+TGG - Chr3:91394439-91394458 None:intergenic 20.0%
!! ATAGTAAAATCTTACTATCA+TGG - Chr3:91393866-91393885 None:intergenic 20.0%
!! ATATCATGATCATGATATTA+AGG + Chr3:91392890-91392909 MsG0380017056.01.T01:intron 20.0%
!! ATTATTGTAATTGTAAAGAG+TGG - Chr3:91395239-91395258 None:intergenic 20.0%
!! CCAATATATAAACATGAAAT+AGG - Chr3:91392938-91392957 None:intergenic 20.0%
!! CCTATTTCATGTTTATATAT+TGG + Chr3:91392935-91392954 MsG0380017056.01.T01:intron 20.0%
!! TATATAAACATGAAATAGGT+AGG - Chr3:91392934-91392953 None:intergenic 20.0%
!! TTTATGGGATAAAGATTAAA+GGG + Chr3:91394772-91394791 MsG0380017056.01.T01:CDS 20.0%
!!! AAAGCATATTTTGAAATGAA+TGG + Chr3:91393966-91393985 MsG0380017056.01.T01:intron 20.0%
!!! ATACTTATTCAATTCTAAAG+CGG + Chr3:91392590-91392609 MsG0380017056.01.T01:CDS 20.0%
!!! TATTTGAAGCATATTTATCA+TGG + Chr3:91393729-91393748 MsG0380017056.01.T01:intron 20.0%
!!! TTTTATGGGATAAAGATTAA+AGG + Chr3:91394771-91394790 MsG0380017056.01.T01:CDS 20.0%
!!! TTTTGGCAGTTTTTTTTTAA+TGG + Chr3:91393754-91393773 MsG0380017056.01.T01:intron 20.0%
!!! TTTTTTGTTAAGTAGTTTAG+TGG - Chr3:91393639-91393658 None:intergenic 20.0%
! AAATCACAATTTGCCAAAAT+CGG - Chr3:91394804-91394823 None:intergenic 25.0%
! AAATGTATAGGACAAATAAG+AGG + Chr3:91394477-91394496 MsG0380017056.01.T01:CDS 25.0%
! AAGTGAAAAAAAATTACTGC+AGG - Chr3:91393101-91393120 None:intergenic 25.0%
! AGTGAAAAAAAATTACTGCA+GGG - Chr3:91393100-91393119 None:intergenic 25.0%
! ATAATCCCATTTCCATTAAA+AGG + Chr3:91394283-91394302 MsG0380017056.01.T01:CDS 25.0%
! ATAGAATTTGATAAGAACTG+AGG - Chr3:91394258-91394277 None:intergenic 25.0%
! ATGTCATTCTTATTCGATAT+TGG - Chr3:91393911-91393930 None:intergenic 25.0%
! GTGTTATAAGGAATGTAAAA+TGG + Chr3:91395073-91395092 MsG0380017056.01.T01:three_prime_UTR 25.0%
! TAATCCCATTTCCATTAAAA+GGG + Chr3:91394284-91394303 MsG0380017056.01.T01:CDS 25.0%
! TTAAAATAGCTAGTGTTACA+AGG - Chr3:91393691-91393710 None:intergenic 25.0%
! TTTGTTTGATCACGAAAATA+TGG + Chr3:91394006-91394025 MsG0380017056.01.T01:intron 25.0%
!! AATTTGAAAGTATGGTAGTT+TGG - Chr3:91392383-91392402 None:intergenic 25.0%
!! GCATATTTATCATGGATTTT+TGG + Chr3:91393737-91393756 MsG0380017056.01.T01:intron 25.0%
!! GGATAATTCTTTTCTTTTTG+AGG - Chr3:91393472-91393491 None:intergenic 25.0%
!! GTTTTTGCAATTTGAAAGTA+TGG - Chr3:91392391-91392410 None:intergenic 25.0%
!! TGGAAGAAGCTAATTTTTAT+GGG + Chr3:91394757-91394776 MsG0380017056.01.T01:CDS 25.0%
!! TTGGAAGAAGCTAATTTTTA+TGG + Chr3:91394756-91394775 MsG0380017056.01.T01:CDS 25.0%
AATGAATGAGAATCATGCAT+TGG + Chr3:91394662-91394681 MsG0380017056.01.T01:CDS 30.0%
AATGTAAACTAGCACAAGAA+TGG + Chr3:91394940-91394959 MsG0380017056.01.T01:CDS 30.0%
ATACAATATTGTTCGAGTCT+TGG + Chr3:91394966-91394985 MsG0380017056.01.T01:CDS 30.0%
ATGGCTTAAATAATGTCACA+AGG - Chr3:91393021-91393040 None:intergenic 30.0%
ATGGTAACAATTTCTTTACC+TGG + Chr3:91394897-91394916 MsG0380017056.01.T01:CDS 30.0%
ATGTAAACTAGCACAAGAAT+GGG + Chr3:91394941-91394960 MsG0380017056.01.T01:CDS 30.0%
ATTTAAGCCATCTGTTAGTT+TGG + Chr3:91393030-91393049 MsG0380017056.01.T01:intron 30.0%
CAACAACTGTTGAAGAATAT+TGG + Chr3:91394307-91394326 MsG0380017056.01.T01:CDS 30.0%
CTTTCTCTTTATTCGGAAAT+GGG + Chr3:91392426-91392445 MsG0380017056.01.T01:exon 30.0%
GAAGATGACAATGGTAATAA+TGG + Chr3:91394870-91394889 MsG0380017056.01.T01:CDS 30.0%
GGTTGAAATTCTTGAAGTTT+GGG - Chr3:91392478-91392497 None:intergenic 30.0%
GTTGAAATTCTTGAAGTTTG+GGG - Chr3:91392477-91392496 None:intergenic 30.0%
TACCAAATGATGAAGTTGTT+TGG - Chr3:91394382-91394401 None:intergenic 30.0%
TAGTTCACATTCTTCAAATG+TGG + Chr3:91394096-91394115 MsG0380017056.01.T01:intron 30.0%
TCATGCATTGGAAAAAATGA+TGG + Chr3:91394674-91394693 MsG0380017056.01.T01:CDS 30.0%
TCTGATATATTAGATTCTCC+AGG - Chr3:91394615-91394634 None:intergenic 30.0%
TCTTTCTCTTTATTCGGAAA+TGG + Chr3:91392425-91392444 MsG0380017056.01.T01:exon 30.0%
TGAATAAGTGATGTGTTTCT+TGG - Chr3:91393594-91393613 None:intergenic 30.0%
TGCATATAACCTAAACTACA+TGG + Chr3:91392533-91392552 MsG0380017056.01.T01:CDS 30.0%
TGGTAACAATTTCTTTACCT+GGG + Chr3:91394898-91394917 MsG0380017056.01.T01:CDS 30.0%
TGTAATTGTAAAGAGTGGAA+TGG - Chr3:91395234-91395253 None:intergenic 30.0%
TTACAAGGTAACTAAGAGAT+TGG - Chr3:91393521-91393540 None:intergenic 30.0%
TTAGCAAATCCATGTAGTTT+AGG - Chr3:91392545-91392564 None:intergenic 30.0%
TTATTACCATTGTCATCTTC+TGG - Chr3:91394870-91394889 None:intergenic 30.0%
TTCCAAACAACTTCATCATT+TGG + Chr3:91394377-91394396 MsG0380017056.01.T01:CDS 30.0%
TTGGAATTGCATGTTTGAAT+TGG + Chr3:91395189-91395208 MsG0380017056.01.T01:three_prime_UTR 30.0%
! AGTTGCTTTGAATCAATGAA+TGG - Chr3:91394055-91394074 None:intergenic 30.0%
! ATGACAATGGTAATAATGGA+AGG + Chr3:91394874-91394893 MsG0380017056.01.T01:CDS 30.0%
! GCTATGATTTGGAAATGTAT+AGG + Chr3:91394465-91394484 MsG0380017056.01.T01:CDS 30.0%
!! AAACATTGGTGCTTTTAAGT+CGG - Chr3:91392634-91392653 None:intergenic 30.0%
!! CTTGGTATTGATATTGGTAT+TGG - Chr3:91394421-91394440 None:intergenic 30.0%
!! CTTTGTCTTGGTATTGATAT+TGG - Chr3:91394427-91394446 None:intergenic 30.0%
!! GATATTGGTATTGGTTGATA+TGG - Chr3:91394412-91394431 None:intergenic 30.0%
!! TGGAATGGTATTTAACTTGT+TGG - Chr3:91395219-91395238 None:intergenic 30.0%
AAAGGAGAAAAAGCAAGATC+AGG - Chr3:91392843-91392862 None:intergenic 35.0%
AACTGAGGTTTAGTGAGATT+TGG - Chr3:91394243-91394262 None:intergenic 35.0%
AATCGATCGCTTTACTCAAT+TGG + Chr3:91393549-91393568 MsG0380017056.01.T01:intron 35.0%
AGGGTTAGAATATCAGAATC+AGG + Chr3:91392687-91392706 MsG0380017056.01.T01:CDS 35.0%
AGTAGCTACATAACTATCAG+TGG - Chr3:91394340-91394359 None:intergenic 35.0%
AGTATATGGATCGGATATAG+TGG - Chr3:91392575-91392594 None:intergenic 35.0%
ATGTTTGGTATATCTCCACA+TGG + Chr3:91395014-91395033 MsG0380017056.01.T01:three_prime_UTR 35.0%
CAAGGTTAATAGTATGCACA+AGG - Chr3:91393003-91393022 None:intergenic 35.0%
CCTTATATAATAGCACCATG+TGG - Chr3:91395032-91395051 None:intergenic 35.0%
CGGTTGAAATTCTTGAAGTT+TGG - Chr3:91392479-91392498 None:intergenic 35.0%
CTCGTCTCTTTCTCTTTATT+CGG + Chr3:91392419-91392438 MsG0380017056.01.T01:five_prime_UTR 35.0%
CTTGTATATGATCATGTGCT+TGG + Chr3:91392816-91392835 MsG0380017056.01.T01:CDS 35.0%
GAAAATGAATTCCCGACAAA+TGG + Chr3:91394555-91394574 MsG0380017056.01.T01:CDS 35.0%
GAACATCTTACATCATTCGA+AGG + Chr3:91393356-91393375 MsG0380017056.01.T01:intron 35.0%
GATATATTAGATTCTCCAGG+AGG - Chr3:91394612-91394631 None:intergenic 35.0%
GATTCATACTCACATGTTTC+AGG + Chr3:91392663-91392682 MsG0380017056.01.T01:CDS 35.0%
GCTAGATATTCACTCGTTTA+AGG - Chr3:91393617-91393636 None:intergenic 35.0%
GCTTAAAGCTGTTAATTGCA+AGG - Chr3:91393493-91393512 None:intergenic 35.0%
GGGGTCTAATTAACTATGTT+TGG + Chr3:91394999-91395018 MsG0380017056.01.T01:three_prime_UTR 35.0%
TGCATTGGAAAAAATGATGG+AGG + Chr3:91394677-91394696 MsG0380017056.01.T01:CDS 35.0%
TGTGAGTATGAATCAAGTAG+TGG - Chr3:91392657-91392676 None:intergenic 35.0%
TTCACATTCTTCAAATGTGG+AGG + Chr3:91394099-91394118 MsG0380017056.01.T01:CDS 35.0%
! AACAGTTGTTGCCCTTTTAA+TGG - Chr3:91394298-91394317 None:intergenic 35.0%
! AATGGGTTCACTACCTAATT+TGG + Chr3:91392443-91392462 MsG0380017056.01.T01:exon 35.0%
! ATACTCACATGTTTCAGGTA+GGG + Chr3:91392668-91392687 MsG0380017056.01.T01:CDS 35.0%
! CAATGGTAATAATGGAAGGA+TGG + Chr3:91394878-91394897 MsG0380017056.01.T01:CDS 35.0%
! GAATCAAGTAGTGGAAACAT+TGG - Chr3:91392648-91392667 None:intergenic 35.0%
! GGACAAATAAGAGGAGATTT+TGG + Chr3:91394486-91394505 MsG0380017056.01.T01:CDS 35.0%
! GGTGTTGTCAAAGTTAACTT+AGG - Chr3:91393317-91393336 None:intergenic 35.0%
! GTGCTAGTTTACATTTCAGT+TGG - Chr3:91394935-91394954 None:intergenic 35.0%
! GTTGCCCTTTTAATGGAAAT+GGG - Chr3:91394291-91394310 None:intergenic 35.0%
! TGTTGCCCTTTTAATGGAAA+TGG - Chr3:91394292-91394311 None:intergenic 35.0%
! TTGGAAAAAATGATGGAGGA+AGG + Chr3:91394681-91394700 MsG0380017056.01.T01:CDS 35.0%
! TTGGCAAATTGTGATTTTCG+AGG + Chr3:91394807-91394826 MsG0380017056.01.T01:CDS 35.0%
! TTTGGCATGTGAAGAGATTT+TGG - Chr3:91394225-91394244 None:intergenic 35.0%
!! AAAGGGCATCACAATTAACA+GGG - Chr3:91393818-91393837 None:intergenic 35.0%
!! AAATTGTGATTTTCGAGGTG+TGG + Chr3:91394812-91394831 MsG0380017056.01.T01:CDS 35.0%
!! AATTGTGATTTTCGAGGTGT+GGG + Chr3:91394813-91394832 MsG0380017056.01.T01:CDS 35.0%
!! CCACATGGTGCTATTATATA+AGG + Chr3:91395029-91395048 MsG0380017056.01.T01:three_prime_UTR 35.0%
!! CTTTTAAGTCGGATATTGAG+AGG - Chr3:91392623-91392642 None:intergenic 35.0%
!!! CTTTTAACTTCATCACCAAG+TGG + Chr3:91394172-91394191 MsG0380017056.01.T01:CDS 35.0%
!!! TGATCTTGCTTTTTCTCCTT+TGG + Chr3:91392842-91392861 MsG0380017056.01.T01:CDS 35.0%
!!! TTCTCCTTTGGTTTTTGTCA+AGG + Chr3:91392854-91392873 MsG0380017056.01.T01:CDS 35.0%
AAAGAGAAAGAGACGAGAGA+AGG - Chr3:91392416-91392435 None:intergenic 40.0%
AATGGAGAGACAGAGTTAAC+CGG + Chr3:91393772-91393791 MsG0380017056.01.T01:intron 40.0%
ATCGAAACAAGTTTACCTCC+TGG + Chr3:91394594-91394613 MsG0380017056.01.T01:CDS 40.0%
CGAGTCTTGGACTTTGTTAA+GGG + Chr3:91394979-91394998 MsG0380017056.01.T01:CDS 40.0%
CGCTTTACTCAATTGGTAGA+GGG + Chr3:91393556-91393575 MsG0380017056.01.T01:intron 40.0%
CGTACCTTGACAAAAACCAA+AGG - Chr3:91392861-91392880 None:intergenic 40.0%
GAAATTCTTGAAGTTTGGGG+AGG - Chr3:91392474-91392493 None:intergenic 40.0%
GAGTCTTGGACTTTGTTAAG+GGG + Chr3:91394980-91394999 MsG0380017056.01.T01:exon 40.0%
TACTCAATTGGTAGAGGGTT+GGG + Chr3:91393561-91393580 MsG0380017056.01.T01:intron 40.0%
TCGAGTCTTGGACTTTGTTA+AGG + Chr3:91394978-91394997 MsG0380017056.01.T01:CDS 40.0%
TCGCTTTACTCAATTGGTAG+AGG + Chr3:91393555-91393574 MsG0380017056.01.T01:intron 40.0%
TCTACAAGTGCTCATAAGCT+TGG + Chr3:91395170-91395189 MsG0380017056.01.T01:three_prime_UTR 40.0%
TTACTCAATTGGTAGAGGGT+TGG + Chr3:91393560-91393579 MsG0380017056.01.T01:intron 40.0%
! AAAATGATGGAGGAAGGTGA+AGG + Chr3:91394687-91394706 MsG0380017056.01.T01:CDS 40.0%
! AAGAGGAGATTTTGGACCTA+GGG + Chr3:91394494-91394513 MsG0380017056.01.T01:CDS 40.0%
! ACTATTTTCTTCACCACGAG+GGG - Chr3:91392514-91392533 None:intergenic 40.0%
! AGCCATCTGTTAGTTTGGTT+TGG + Chr3:91393035-91393054 MsG0380017056.01.T01:intron 40.0%
! CACTATTTTCTTCACCACGA+GGG - Chr3:91392515-91392534 None:intergenic 40.0%
! CATACTCACATGTTTCAGGT+AGG + Chr3:91392667-91392686 MsG0380017056.01.T01:CDS 40.0%
! GCCATCTGTTAGTTTGGTTT+GGG + Chr3:91393036-91393055 MsG0380017056.01.T01:intron 40.0%
! TAAGAGGAGATTTTGGACCT+AGG + Chr3:91394493-91394512 MsG0380017056.01.T01:CDS 40.0%
!! CAAAGGGCATCACAATTAAC+AGG - Chr3:91393819-91393838 None:intergenic 40.0%
!! CCATCTGTTAGTTTGGTTTG+GGG + Chr3:91393037-91393056 MsG0380017056.01.T01:intron 40.0%
!! TAAAGGGCAGAAACCGATTT+TGG + Chr3:91394788-91394807 MsG0380017056.01.T01:CDS 40.0%
AAATGTGGAGGACTATCCGT+GGG + Chr3:91394111-91394130 MsG0380017056.01.T01:CDS 45.0%
AGTTGGTCAAGTTCTTTCCC+AGG - Chr3:91394918-91394937 None:intergenic 45.0%
CCCCAAACCAAACTAACAGA+TGG - Chr3:91393040-91393059 None:intergenic 45.0%
GCGTCGTTGCACTTGATAAA+CGG - Chr3:91392717-91392736 None:intergenic 45.0%
GTACATATCGTCACAACCCT+AGG - Chr3:91394513-91394532 None:intergenic 45.0%
GTTTATCAAGTGCAACGACG+CGG + Chr3:91392716-91392735 MsG0380017056.01.T01:CDS 45.0%
TGAATTCCCGACAAATGGCT+CGG + Chr3:91394560-91394579 MsG0380017056.01.T01:CDS 45.0%
TGGGGAGGAGTTTCCAAATT+AGG - Chr3:91392459-91392478 None:intergenic 45.0%
! GCACTATTTTCTTCACCACG+AGG - Chr3:91392516-91392535 None:intergenic 45.0%
! GGCATGTGAAGAGATTTTGG+TGG - Chr3:91394222-91394241 None:intergenic 45.0%
!!! GGGTGATCAAGGTGTTGTTT+TGG + Chr3:91394833-91394852 MsG0380017056.01.T01:CDS 45.0%
!!! GGTGTTGTTTTGGTTCTTCC+AGG + Chr3:91394843-91394862 MsG0380017056.01.T01:CDS 45.0%
AAGTGGAGTCACACACTAGC+TGG + Chr3:91394189-91394208 MsG0380017056.01.T01:CDS 50.0%
AGCTAGTGTGTGACTCCACT+TGG - Chr3:91394190-91394209 None:intergenic 50.0%
CAAATGTGGAGGACTATCCG+TGG + Chr3:91394110-91394129 MsG0380017056.01.T01:CDS 50.0%
CCAGGACCAGAAGATGACAA+TGG + Chr3:91394861-91394880 MsG0380017056.01.T01:CDS 50.0%
CCATTGTCATCTTCTGGTCC+TGG - Chr3:91394864-91394883 None:intergenic 50.0%
CTCAACACCGAGCCATTTGT+CGG - Chr3:91394570-91394589 None:intergenic 50.0%
GAAAACGCTGCGTGAATGGT+TGG + Chr3:91392767-91392786 MsG0380017056.01.T01:CDS 50.0%
GAGGCTGCGCAAATTGCAAA+GGG - Chr3:91393835-91393854 None:intergenic 50.0%
TACTATCATGGCCACCGATG+AGG - Chr3:91393854-91393873 None:intergenic 50.0%
TCAACACCGAGCCATTTGTC+GGG - Chr3:91394569-91394588 None:intergenic 50.0%
TGAGGCTGCGCAAATTGCAA+AGG - Chr3:91393836-91393855 None:intergenic 50.0%
TGCAATTTGCGCAGCCTCAT+CGG + Chr3:91393837-91393856 MsG0380017056.01.T01:intron 50.0%
TTTCGAGGTGTGGGTGATCA+AGG + Chr3:91394822-91394841 MsG0380017056.01.T01:CDS 50.0%
AATTTGCGCAGCCTCATCGG+TGG + Chr3:91393840-91393859 MsG0380017056.01.T01:intron 55.0%
ACGAGGGGTTGCTGGAACTA+CGG - Chr3:91392499-91392518 None:intergenic 55.0%
ACTATCCGTGGGACTGAGCT+GGG + Chr3:91394122-91394141 MsG0380017056.01.T01:CDS 55.0%
CTGAGCTGGGCTCACATTCT+TGG + Chr3:91394135-91394154 MsG0380017056.01.T01:CDS 55.0%
GCGAGAAAACGCTGCGTGAA+TGG + Chr3:91392763-91392782 MsG0380017056.01.T01:CDS 55.0%
TATCAAGTGCAACGACGCGG+AGG + Chr3:91392719-91392738 MsG0380017056.01.T01:CDS 55.0%
GACTATCCGTGGGACTGAGC+TGG + Chr3:91394121-91394140 MsG0380017056.01.T01:CDS 60.0%
GTAGTTCCAGCAACCCCTCG+TGG + Chr3:91392498-91392517 MsG0380017056.01.T01:CDS 60.0%
TCTTCACCACGAGGGGTTGC+TGG - Chr3:91392507-91392526 None:intergenic 60.0%
GTGAGCCCAGCTCAGTCCCA+CGG - Chr3:91394130-91394149 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 91392370 91395323 91392370 ID=MsG0380017056.01;Name=MsG0380017056.01
Chr3 mRNA 91392370 91395323 91392370 ID=MsG0380017056.01.T01;Parent=MsG0380017056.01;Name=MsG0380017056.01.T01;_AED=0.45;_eAED=0.45;_QI=74|1|1|1|1|1|2|325|443
Chr3 exon 91392370 91392875 91392370 ID=MsG0380017056.01.T01:exon:25360;Parent=MsG0380017056.01.T01
Chr3 exon 91394099 91395323 91394099 ID=MsG0380017056.01.T01:exon:25361;Parent=MsG0380017056.01.T01
Chr3 five_prime_UTR 91392370 91392443 91392370 ID=MsG0380017056.01.T01:five_prime_utr;Parent=MsG0380017056.01.T01
Chr3 CDS 91392444 91392875 91392444 ID=MsG0380017056.01.T01:cds;Parent=MsG0380017056.01.T01
Chr3 CDS 91394099 91394998 91394099 ID=MsG0380017056.01.T01:cds;Parent=MsG0380017056.01.T01
Chr3 three_prime_UTR 91394999 91395323 91394999 ID=MsG0380017056.01.T01:three_prime_utr;Parent=MsG0380017056.01.T01
Gene Sequence

>MsG0380017056.01.T01

ATGGGTTCACTACCTAATTTGGAAACTCCTCCCCAAACTTCAAGAATTTCAACCGTAGTTCCAGCAACCCCTCGTGGTGAAGAAAATAGTGCATATAACCTAAACTACATGGATTTGCTAATGAAACTCCACTATATCCGATCCATATACTTATTCAATTCTAAAGCGGTTCAAAACCTCTCAATATCCGACTTAAAAGCACCAATGTTTCCACTACTTGATTCATACTCACATGTTTCAGGTAGGGTTAGAATATCAGAATCAGGAAGACCGTTTATCAAGTGCAACGACGCGGAGGTGCGAATAGCAGAGTCACACTGCGAGAAAACGCTGCGTGAATGGTTGGATGAAAAAGAGTACTCTGTTGATGAACTTGTATATGATCATGTGCTTGGTCCTGATCTTGCTTTTTCTCCTTTGGTTTTTGTCAAGTTCACATTCTTCAAATGTGGAGGACTATCCGTGGGACTGAGCTGGGCTCACATTCTTGGAGATGCATTTTCAGCTTTTAACTTCATCACCAAGTGGAGTCACACACTAGCTGGTCAAGCTCCACCAAAATCTCTTCACATGCCAAATCTCACTAAACCTCAGTTCTTATCAAATTCTATTTCTGATAATCCCATTTCCATTAAAAGGGCAACAACTGTTGAAGAATATTGGCTCGCTGCCACTGATAGTTATGTAGCTACTCACACTTTTCACATCACTTCCAAACAACTTCATCATTTGGTAACAACATCCATATCAACCAATACCAATATCAATACCAAGACAAAGTATTTTGAAATTATTTCAGCTATGATTTGGAAATGTATAGGACAAATAAGAGGAGATTTTGGACCTAGGGTTGTGACGATATGTACTACAAATATCTCTGATCGCGCTGAAAATGAATTCCCGACAAATGGCTCGGTGTTGAGCAAAATCGAAACAAGTTTACCTCCTGGAGAATCTAATATATCAGAATTAGTGAAGCTAATTTCTGAGAAAAAAATGAATGAGAATCATGCATTGGAAAAAATGATGGAGGAAGGTGAAGGAAAAGATGATTTTATTGTTTATGGAGCAAAGTTAACATTTGTAGATTTGGAAGAAGCTAATTTTTATGGGATAAAGATTAAAGGGCAGAAACCGATTTTGGCAAATTGTGATTTTCGAGGTGTGGGTGATCAAGGTGTTGTTTTGGTTCTTCCAGGACCAGAAGATGACAATGGTAATAATGGAAGGATGGTAACAATTTCTTTACCTGGGAAAGAACTTGACCAACTGAAATGTAAACTAGCACAAGAATGGGATATACAATATTGTTCGAGTCTTGGACTTTGTTAA

Protein sequence

>MsG0380017056.01.T01

MGSLPNLETPPQTSRISTVVPATPRGEENSAYNLNYMDLLMKLHYIRSIYLFNSKAVQNLSISDLKAPMFPLLDSYSHVSGRVRISESGRPFIKCNDAEVRIAESHCEKTLREWLDEKEYSVDELVYDHVLGPDLAFSPLVFVKFTFFKCGGLSVGLSWAHILGDAFSAFNFITKWSHTLAGQAPPKSLHMPNLTKPQFLSNSISDNPISIKRATTVEEYWLAATDSYVATHTFHITSKQLHHLVTTSISTNTNINTKTKYFEIISAMIWKCIGQIRGDFGPRVVTICTTNISDRAENEFPTNGSVLSKIETSLPPGESNISELVKLISEKKMNENHALEKMMEEGEGKDDFIVYGAKLTFVDLEEANFYGIKIKGQKPILANCDFRGVGDQGVVLVLPGPEDDNGNNGRMVTISLPGKELDQLKCKLAQEWDIQYCSSLGLC*