AlfalfaGEDB | MsG0480020473.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020473.01

KEGG: -
GO: -
PFAM: PF06916

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020473.01.T01	TKY67033.1	60.163	246	43	5	1	246	1	191	3.02E-75	236

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020473.01.T01	A0A4P1RDC5	58.776	245	46	4	1	245	1	190	2.86e-81	251

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048085.01	MsG0480020473.01	0.802735	4.872636e-49	2.405051e-46
MsG0080048198.01	MsG0480020473.01	0.802524	5.385286e-49	2.643678e-46
MsG0080048273.01	MsG0480020473.01	0.814804	1.278137e-51	8.661402e-49
MsG0080048274.01	MsG0480020473.01	0.801328	9.482365e-49	4.515914e-46
MsG0080048506.01	MsG0480020473.01	-0.811923	5.491799e-51	3.443232e-48
MsG0080048507.01	MsG0480020473.01	-0.819376	1.199663e-52	9.215000e-50
MsG0080048528.01	MsG0480020473.01	0.833579	4.918198e-56	5.687710e-53
MsG0080048727.01	MsG0480020473.01	0.819881	9.200939e-53	7.168538e-50
MsG0080048748.01	MsG0480020473.01	0.849407	3.299130e-60	6.247637e-57
MsG0080048845.01	MsG0480020473.01	0.824041	1.000407e-53	8.761103e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020473.01.T01	MTR_4g052010	98.165	109	2	0	138	246	80	188	5.38e-73	221
MsG0480020473.01.T01	MTR_4g052010	94.805	77	4	0	1	77	1	77	3.37e-44	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020473.01.T01	AT2G27290	49.796	245	57	6	4	239	3	190	3.25e-52	168

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Find 55 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCGGTACCTTTGCTT+TGG	0.429669	4:-42129538	MsG0480020473.01.T01:CDS
AAACAATATTCCTCTGGCAA+TGG	0.578995	4:+42129338	None:intergenic
AAAGAAGCACAAGAAGGTGA+TGG	0.588002	4:+42130991	None:intergenic
AAATAAACAAGAGAAAGAAA+TGG	0.439156	4:+42130780	None:intergenic
AAGAAGTATGGTCTTGAAGC+TGG	0.499317	4:-42130817	MsG0480020473.01.T01:CDS
AAGGAGTTGCTGGCAAAATA+TGG	0.314060	4:-42129787	MsG0480020473.01.T01:CDS
AATAAACAAGAGAAAGAAAT+GGG	0.479189	4:+42130781	None:intergenic
AATCCAACCAGCTACGATTG+GGG	0.648062	4:+42129458	None:intergenic
ACAAAGCTGCATCTCCAATT+AGG	0.288679	4:-42129503	MsG0480020473.01.T01:CDS
ACTGTGGGTGGAAACCTAAT+TGG	0.379765	4:+42129489	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGATTTACGTGACTGAA+TGG	+	Chr4:42129315-42129334	None:intergenic	30.0%
ATTTATGTCTGTATATCTGC+AGG	-	Chr4:42130650-42130669	MsG0480020473.01.T01:intron	30.0%
GGAGATGAAAATATGATTAC+AGG	+	Chr4:42130883-42130902	None:intergenic	30.0%
TATCTCAGCAGTAAAATTGT+CGG	+	Chr4:42130086-42130105	None:intergenic	30.0%
TTTCTTGTCATGTAGAACTT+GGG	-	Chr4:42129791-42129810	MsG0480020473.01.T01:CDS	30.0%
AAACAATATTCCTCTGGCAA+TGG	+	Chr4:42130904-42130923	None:intergenic	35.0%
AGAGATCAATGACAGAGTAA+TGG	+	Chr4:42130498-42130517	None:intergenic	35.0%
AGCTGTTAAAGAGAAAACTG+AGG	-	Chr4:42129355-42129374	MsG0480020473.01.T01:three_prime_UTR	35.0%
CAGTACAGAACATTTCTTGA+AGG	+	Chr4:42129986-42130005	None:intergenic	35.0%
CAGTATGCTAAACCAAGAAA+TGG	+	Chr4:42129911-42129930	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	42129227	42131034	42129227	ID=MsG0480020473.01;Name=MsG0480020473.01
Chr4	mRNA	42129227	42131034	42129227	ID=MsG0480020473.01.T01;Parent=MsG0480020473.01;Name=MsG0480020473.01.T01;_AED=0.27;_eAED=0.41;_QI=0\|0.33\|0.25\|1\|1\|1\|4\|204\|246
Chr4	exon	42129227	42129589	42129227	ID=MsG0480020473.01.T01:exon:5108;Parent=MsG0480020473.01.T01
Chr4	exon	42129684	42129855	42129684	ID=MsG0480020473.01.T01:exon:5107;Parent=MsG0480020473.01.T01
Chr4	exon	42129985	42130118	42129985	ID=MsG0480020473.01.T01:exon:5106;Parent=MsG0480020473.01.T01
Chr4	exon	42130759	42131034	42130759	ID=MsG0480020473.01.T01:exon:5105;Parent=MsG0480020473.01.T01
Chr4	CDS	42130759	42131034	42130759	ID=MsG0480020473.01.T01:cds;Parent=MsG0480020473.01.T01
Chr4	CDS	42129985	42130118	42129985	ID=MsG0480020473.01.T01:cds;Parent=MsG0480020473.01.T01
Chr4	CDS	42129684	42129855	42129684	ID=MsG0480020473.01.T01:cds;Parent=MsG0480020473.01.T01
Chr4	CDS	42129431	42129589	42129431	ID=MsG0480020473.01.T01:cds;Parent=MsG0480020473.01.T01
Chr4	three_prime_UTR	42129227	42129430	42129227	ID=MsG0480020473.01.T01:three_prime_utr;Parent=MsG0480020473.01.T01

Gene Sequence

>MsG0480020473.01.T01

ATGACAACGTTTTTGTTGCTACCATCACCTTCTTGTGCTTCTTTTCTGAGCAACAAGAAGAGTTCAAGGTTTTGCAGTCTTGCTTCCATTCAGTCACGTAAATCTAATGTTAAAGTGTTCAGAGTTAGAGCTGTTAAAGAGAAAACTGAGGAAATCAAAAGCTCCTCAAAGAATTCTTCACCTGAAGAAGTAACCAAGAAGTATGGTCTTGAAGCTGGTCTTTGGAAGGTGCCCATTTCTTTCTCTTGTTTATTTTGGTTTAATTATGATTATGTGAAATATAAGTTGAGTTTTAAGGTAGTGAAATTTGTTTCCTTGATTTTTGTCGACTCAACCAGTTGGGTTATCGTTTTAATGGAGAGGATGAATAATGACATGGGTTTTATACTTATGGGAGTGTCATCGTGTCGTTCAAAGGAAGAAGGGGAACAACAGAAATCAAAAGGTGATCAAGCCAAGGAGTTGCTGGCAAAATATGGAGGAGCATACTTAGCCACCTCCATTACTCTGTCATTGATCTCTTTCGCTCTTTGTTATGTATTAATCAATGCTGGAGTAGATGTTCAAACTTTGCTTCAGAAGGTAGGAATCACTACTGATGCTACCGGTGAAAAAGTCGGTACCTTTGCTTTGGCATATGCTGCACACAAAGCTGCATCTCCAATTAGGTTTCCACCCACAGTAGCTCTTACCCCAATCGTAGCTGGTTGGATTGGAAAGAAAGCTGATAAAGATAAGTAG

Protein sequence

>MsG0480020473.01.T01

MTTFLLLPSPSCASFLSNKKSSRFCSLASIQSRKSNVKVFRVRAVKEKTEEIKSSSKNSSPEEVTKKYGLEAGLWKVPISFSCLFWFNYDYVKYKLSFKVVKFVSLIFVDSTSWVIVLMERMNNDMGFILMGVSSCRSKEEGEQQKSKGDQAKELLAKYGGAYLATSITLSLISFALCYVLINAGVDVQTLLQKVGITTDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKADKDK*