AlfalfaGEDB | MsG0480020596.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020596.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020596.01.T01	XP_003606265.1	95.408	196	9	0	1	196	1	196	2.74E-136	389

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020596.01.T01	Q56XJ7	38.462	91	54	1	68	158	119	207	8.65E-12	65.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020596.01.T01	G7JL02	95.408	196	9	0	1	196	1	196	1.31e-136	389

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049070.01	MsG0480020596.01	0.859788	3.246225e-63	8.677307e-60
MsG0180000040.01	MsG0480020596.01	0.815222	1.032723e-51	7.077555e-49
MsG0180000549.01	MsG0480020596.01	0.814458	1.524865e-51	1.023740e-48
MsG0180000942.01	MsG0480020596.01	0.815417	9.342693e-52	6.437522e-49
MsG0180000976.01	MsG0480020596.01	0.827789	1.288312e-54	1.256418e-51
MsG0180001137.01	MsG0480020596.01	0.809072	2.266363e-50	1.317735e-47
MsG0180001548.01	MsG0480020596.01	0.885056	1.129960e-71	7.640518e-68
MsG0180002700.01	MsG0480020596.01	0.806529	7.869746e-50	4.281416e-47
MsG0180003196.01	MsG0480020596.01	0.863577	2.254442e-64	6.867120e-61
MsG0180004714.01	MsG0480020596.01	0.814999	1.157530e-51	7.885444e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020596.01.T01	MTR_4g055420	95.408	196	9	0	1	196	1	196	3.31e-140	389
MsG0480020596.01.T01	MTR_2g084805	54.857	175	67	5	15	182	8	177	2.66e-56	177
MsG0480020596.01.T01	MTR_4g102040	43.077	130	58	2	69	196	57	172	2.86e-28	104
MsG0480020596.01.T01	MTR_5g011750	51.724	87	42	0	69	155	26	112	7.41e-25	94.0
MsG0480020596.01.T01	MTR_5g011770	40.741	81	48	0	72	152	117	197	1.25e-14	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020596.01.T01	AT2G27830	47.959	196	94	4	1	194	1	190	5.78e-50	160
MsG0480020596.01.T01	AT4G22758	38.462	91	54	1	68	158	119	207	8.82e-13	65.5
MsG0480020596.01.T01	AT1G70780	30.328	122	79	3	71	188	16	135	8.00e-12	60.8

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Find 51 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCGTAACAGCCATG+TGG	0.698169	4:+44366341	MsG0480020596.01.T01:CDS
AAGCAAGAAGCTTCCTTCGA+CGG	0.546345	4:-44366675	None:intergenic
AAGCTTGAAGAAAGTGACAA+TGG	0.627431	4:+44367049	MsG0480020596.01.T01:CDS
AATGAGAAGCTTAAGGAAAT+TGG	0.265022	4:+44366998	MsG0480020596.01.T01:CDS
ACAAGGTCCGGCATAGTCTT+TGG	0.414724	4:-44366453	None:intergenic
ACACTTCTGCAACACTGTCC+GGG	0.435674	4:+44366415	MsG0480020596.01.T01:CDS
ACAGCCATGTGGAAACTCAC+CGG	0.607844	4:+44366352	MsG0480020596.01.T01:CDS
ACCTTAATGAGTAACTTCGT+CGG	0.631958	4:-44366534	None:intergenic
ACTCATTAAGGTTACGATGA+TGG	0.455220	4:+44366545	MsG0480020596.01.T01:CDS
AGATAGAAATGAGAAGCTTA+AGG	0.392238	4:+44366991	MsG0480020596.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAGAAGCTTAAGGAAAT+TGG	+	Chr4:44366998-44367017	MsG0480020596.01.T01:CDS	30.0%
AGATAGAAATGAGAAGCTTA+AGG	+	Chr4:44366991-44367010	MsG0480020596.01.T01:CDS	30.0%
GTAAGGTTGTATGTTAAAGA+AGG	+	Chr4:44366636-44366655	MsG0480020596.01.T01:CDS	30.0%
TATGACGTATCTAATTTCTC+TGG	+	Chr4:44366810-44366829	MsG0480020596.01.T01:intron	30.0%
AAGCTTGAAGAAAGTGACAA+TGG	+	Chr4:44367049-44367068	MsG0480020596.01.T01:CDS	35.0%
ACCTTAATGAGTAACTTCGT+CGG	-	Chr4:44366537-44366556	None:intergenic	35.0%
ACTCATTAAGGTTACGATGA+TGG	+	Chr4:44366545-44366564	MsG0480020596.01.T01:CDS	35.0%
AGCTTAAGGAAATTGGATCA+AGG	+	Chr4:44367005-44367024	MsG0480020596.01.T01:CDS	35.0%
CTCATTAAGGTTACGATGAT+GGG	+	Chr4:44366546-44366565	MsG0480020596.01.T01:CDS	35.0%
TCACTTTCTTCAAGCTTCTT+TGG	-	Chr4:44367046-44367065	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	44366327	44367174	44366327	ID=MsG0480020596.01;Name=MsG0480020596.01
Chr4	mRNA	44366327	44367174	44366327	ID=MsG0480020596.01.T01;Parent=MsG0480020596.01;Name=MsG0480020596.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|2\|0\|196
Chr4	exon	44366327	44366729	44366327	ID=MsG0480020596.01.T01:exon:13865;Parent=MsG0480020596.01.T01
Chr4	exon	44366987	44367174	44366987	ID=MsG0480020596.01.T01:exon:13866;Parent=MsG0480020596.01.T01
Chr4	CDS	44366327	44366729	44366327	ID=MsG0480020596.01.T01:cds;Parent=MsG0480020596.01.T01
Chr4	CDS	44366987	44367174	44366987	ID=MsG0480020596.01.T01:cds;Parent=MsG0480020596.01.T01

Gene Sequence

>MsG0480020596.01.T01

ATGTCAAACGTCAAAAACCACCGTAACAGCCATGTGGAAACTCACCGGAGAGGAAGATTAACAGAGAAATCATCATCTTTTCATGGTCACACTTCTGCAACACTGTCCGGGGCAAAACTCCGGCGGCCAAAGACTATGCCGGACCTTGTCCAGGACAGGAAGCGTGCGGCAATGACTTCTTCGCCACCGGAGTTTTTTCCCAGACAGCCGACGAAGTTACTCATTAAGGTTACGATGATGGGCAGCCTTGGTCCCGTGCAAGTGTTAATGACGATGGAGTCGACGGTTGGAGATTTGATAGCGGAGGCTGTAAGGTTGTATGTTAAAGAAGGTCGCCGTCCAATCTTGCCGTCGAAGGAAGCTTCTTGCTTTGATCTTCATTACTCTCAGTTCAGCTTAGAAAGTTTAGATAGAAATGAGAAGCTTAAGGAAATTGGATCAAGGAACTTTTTTATGTGTCCAAAGAAGCTTGAAGAAAGTGACAATGGTGGAGACCATAACGTAACGGCGTCGTTTAGTTCATGTTCCAGACAAGTTGAAAAAGTGAGCAAAGGTTTTGGTCTTTTAAGGTGTATAGATTTCTTGATATGA

Protein sequence

>MsG0480020596.01.T01

MSNVKNHRNSHVETHRRGRLTEKSSSFHGHTSATLSGAKLRRPKTMPDLVQDRKRAAMTSSPPEFFPRQPTKLLIKVTMMGSLGPVQVLMTMESTVGDLIAEAVRLYVKEGRRPILPSKEASCFDLHYSQFSLESLDRNEKLKEIGSRNFFMCPKKLEESDNGGDHNVTASFSSCSRQVEKVSKGFGLLRCIDFLI*