Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020596.01.T01 | XP_003606265.1 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 2.74E-136 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020596.01.T01 | Q56XJ7 | 38.462 | 91 | 54 | 1 | 68 | 158 | 119 | 207 | 8.65E-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020596.01.T01 | G7JL02 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 1.31e-136 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049070.01 | MsG0480020596.01 | 0.859788 | 3.246225e-63 | 8.677307e-60 |
| MsG0180000040.01 | MsG0480020596.01 | 0.815222 | 1.032723e-51 | 7.077555e-49 |
| MsG0180000549.01 | MsG0480020596.01 | 0.814458 | 1.524865e-51 | 1.023740e-48 |
| MsG0180000942.01 | MsG0480020596.01 | 0.815417 | 9.342693e-52 | 6.437522e-49 |
| MsG0180000976.01 | MsG0480020596.01 | 0.827789 | 1.288312e-54 | 1.256418e-51 |
| MsG0180001137.01 | MsG0480020596.01 | 0.809072 | 2.266363e-50 | 1.317735e-47 |
| MsG0180001548.01 | MsG0480020596.01 | 0.885056 | 1.129960e-71 | 7.640518e-68 |
| MsG0180002700.01 | MsG0480020596.01 | 0.806529 | 7.869746e-50 | 4.281416e-47 |
| MsG0180003196.01 | MsG0480020596.01 | 0.863577 | 2.254442e-64 | 6.867120e-61 |
| MsG0180004714.01 | MsG0480020596.01 | 0.814999 | 1.157530e-51 | 7.885444e-49 |
| MsG0180004792.01 | MsG0480020596.01 | 0.881868 | 1.677325e-70 | 9.991867e-67 |
| MsG0180005339.01 | MsG0480020596.01 | 0.817958 | 2.516857e-52 | 1.859189e-49 |
| MsG0180005822.01 | MsG0480020596.01 | 0.814421 | 1.553990e-51 | 1.042274e-48 |
| MsG0180005898.01 | MsG0480020596.01 | 0.817523 | 3.156002e-52 | 2.303727e-49 |
| MsG0180006027.01 | MsG0480020596.01 | -0.811203 | 7.873533e-51 | 4.843597e-48 |
| MsG0180006028.01 | MsG0480020596.01 | 0.838335 | 3.057248e-57 | 4.081836e-54 |
| MsG0180006217.01 | MsG0480020596.01 | 0.844843 | 5.882085e-59 | 9.617963e-56 |
| MsG0280010728.01 | MsG0480020596.01 | 0.809785 | 1.593790e-50 | 9.444583e-48 |
| MsG0280011218.01 | MsG0480020596.01 | 0.825745 | 3.964937e-54 | 3.645862e-51 |
| MsG0380012868.01 | MsG0480020596.01 | 0.830017 | 3.720590e-55 | 3.872413e-52 |
| MsG0480019644.01 | MsG0480020596.01 | 0.841259 | 5.295295e-58 | 7.736785e-55 |
| MsG0480019812.01 | MsG0480020596.01 | 0.908483 | 1.627962e-81 | 3.026591e-77 |
| MsG0480020473.01 | MsG0480020596.01 | 0.853043 | 3.101194e-61 | 6.612066e-58 |
| MsG0480020596.01 | MsG0480021038.01 | 0.859051 | 5.404272e-63 | 1.408235e-59 |
| MsG0480020596.01 | MsG0480021213.01 | 0.870236 | 1.700140e-66 | 6.565749e-63 |
| MsG0480020596.01 | MsG0480021377.01 | 0.809402 | 1.925755e-50 | 1.129620e-47 |
| MsG0480020596.01 | MsG0480021967.01 | 0.829756 | 4.307069e-55 | 4.449871e-52 |
| MsG0480020596.01 | MsG0480022113.01 | 0.852796 | 3.647716e-61 | 7.712867e-58 |
| MsG0480020596.01 | MsG0480022154.01 | 0.853118 | 2.952394e-61 | 6.310484e-58 |
| MsG0480020596.01 | MsG0480022162.01 | 0.852622 | 4.091386e-61 | 8.599704e-58 |
| MsG0480020596.01 | MsG0480022240.01 | 0.842052 | 3.271998e-58 | 4.900918e-55 |
| MsG0480020596.01 | MsG0480023326.01 | 0.803325 | 3.679737e-49 | 1.843703e-46 |
| MsG0480020596.01 | MsG0480023406.01 | 0.848376 | 6.375676e-60 | 1.167649e-56 |
| MsG0480020596.01 | MsG0480023454.01 | -0.802225 | 6.206076e-49 | 3.023547e-46 |
| MsG0480020596.01 | MsG0480023466.01 | 0.845045 | 5.187376e-59 | 8.537407e-56 |
| MsG0480020596.01 | MsG0580024471.01 | 0.814989 | 1.163381e-51 | 7.923106e-49 |
| MsG0480020596.01 | MsG0580024872.01 | 0.808630 | 2.818493e-50 | 1.619552e-47 |
| MsG0480020596.01 | MsG0580027183.01 | 0.874793 | 5.114248e-68 | 2.333083e-64 |
| MsG0480020596.01 | MsG0580027189.01 | 0.822967 | 1.784032e-53 | 1.515860e-50 |
| MsG0480020596.01 | MsG0580029751.01 | 0.840412 | 8.831139e-58 | 1.256999e-54 |
| MsG0480020596.01 | MsG0680032416.01 | 0.809964 | 1.458510e-50 | 8.683450e-48 |
| MsG0480020596.01 | MsG0680032850.01 | 0.856761 | 2.585419e-62 | 6.235836e-59 |
| MsG0480020596.01 | MsG0680033852.01 | 0.804426 | 2.172199e-49 | 1.119604e-46 |
| MsG0480020596.01 | MsG0680035664.01 | 0.802146 | 6.441902e-49 | 3.132197e-46 |
| MsG0480020596.01 | MsG0680035665.01 | 0.814764 | 1.305021e-51 | 8.833369e-49 |
| MsG0480020596.01 | MsG0780035965.01 | 0.816506 | 5.338740e-52 | 3.789882e-49 |
| MsG0480020596.01 | MsG0780036008.01 | 0.824742 | 6.844195e-54 | 6.116357e-51 |
| MsG0480020596.01 | MsG0780036620.01 | 0.813827 | 2.101631e-51 | 1.386986e-48 |
| MsG0480020596.01 | MsG0780037363.01 | 0.816253 | 6.083873e-52 | 4.289301e-49 |
| MsG0480020596.01 | MsG0780037507.01 | 0.802996 | 4.303571e-49 | 2.138140e-46 |
| MsG0480020596.01 | MsG0780040550.01 | 0.807684 | 4.480941e-50 | 2.511807e-47 |
| MsG0480020596.01 | MsG0780040670.01 | -0.812521 | 4.066006e-51 | 2.590998e-48 |
| MsG0480020596.01 | MsG0780040684.01 | 0.872283 | 3.581830e-67 | 1.490151e-63 |
| MsG0480020596.01 | MsG0780040965.01 | 0.828633 | 8.066794e-55 | 8.063586e-52 |
| MsG0480020596.01 | MsG0780041331.01 | 0.849098 | 4.020482e-60 | 7.539117e-57 |
| MsG0480020596.01 | MsG0780041361.01 | 0.855660 | 5.433899e-62 | 1.263896e-58 |
| MsG0480020596.01 | MsG0880041847.01 | 0.837769 | 4.275396e-57 | 5.611303e-54 |
| MsG0480020596.01 | MsG0880042086.01 | 0.838584 | 2.637220e-57 | 3.548220e-54 |
| MsG0480020596.01 | MsG0880042415.01 | 0.871267 | 7.784529e-67 | 3.120695e-63 |
| MsG0480020596.01 | MsG0880042416.01 | 0.800466 | 1.422380e-48 | 6.627456e-46 |
| MsG0480020596.01 | MsG0880043056.01 | 0.841395 | 4.877882e-58 | 7.158223e-55 |
| MsG0480020596.01 | MsG0880043107.01 | 0.803979 | 2.691740e-49 | 1.371666e-46 |
| MsG0480020596.01 | MsG0880045703.01 | 0.810824 | 9.512648e-51 | 5.793609e-48 |
| MsG0480020596.01 | MsG0880045724.01 | -0.803536 | 3.327295e-49 | 1.676323e-46 |
| MsG0480020596.01 | MsG0880046124.01 | 0.813055 | 3.106276e-51 | 2.007460e-48 |
| MsG0480020596.01 | MsG0880046408.01 | 0.802233 | 6.181403e-49 | 3.012200e-46 |
| MsG0480020596.01 | MsG0880046946.01 | -0.800586 | 1.344357e-48 | 6.283244e-46 |
| MsG0480020596.01 | MsG0880047312.01 | -0.810325 | 1.219041e-50 | 7.326292e-48 |
| MsG0380015456.01 | MsG0480020596.01 | 0.810852 | 9.378063e-51 | 5.716122e-48 |
| MsG0380017427.01 | MsG0480020596.01 | 0.870410 | 1.489865e-66 | 5.789706e-63 |
| MsG0380017666.01 | MsG0480020596.01 | -0.802942 | 4.415935e-49 | 2.191018e-46 |
| MsG0380017683.01 | MsG0480020596.01 | 0.812626 | 3.857482e-51 | 2.464801e-48 |
| MsG0480018337.01 | MsG0480020596.01 | 0.882841 | 7.425175e-71 | 4.594290e-67 |
| MsG0480018338.01 | MsG0480020596.01 | 0.872631 | 2.742160e-67 | 1.155664e-63 |
| MsG0280007406.01 | MsG0480020596.01 | 0.849401 | 3.312089e-60 | 6.271111e-57 |
| MsG0280007852.01 | MsG0480020596.01 | 0.807521 | 4.853729e-50 | 2.709335e-47 |
| MsG0280007853.01 | MsG0480020596.01 | 0.810861 | 9.339916e-51 | 5.694060e-48 |
| MsG0280009675.01 | MsG0480020596.01 | 0.832913 | 7.207105e-56 | 8.170174e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020596.01.T01 | MTR_4g055420 | 95.408 | 196 | 9 | 0 | 1 | 196 | 1 | 196 | 3.31e-140 | 389 |
| MsG0480020596.01.T01 | MTR_2g084805 | 54.857 | 175 | 67 | 5 | 15 | 182 | 8 | 177 | 2.66e-56 | 177 |
| MsG0480020596.01.T01 | MTR_4g102040 | 43.077 | 130 | 58 | 2 | 69 | 196 | 57 | 172 | 2.86e-28 | 104 |
| MsG0480020596.01.T01 | MTR_5g011750 | 51.724 | 87 | 42 | 0 | 69 | 155 | 26 | 112 | 7.41e-25 | 94.0 |
| MsG0480020596.01.T01 | MTR_5g011770 | 40.741 | 81 | 48 | 0 | 72 | 152 | 117 | 197 | 1.25e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020596.01.T01 | AT2G27830 | 47.959 | 196 | 94 | 4 | 1 | 194 | 1 | 190 | 5.78e-50 | 160 |
| MsG0480020596.01.T01 | AT4G22758 | 38.462 | 91 | 54 | 1 | 68 | 158 | 119 | 207 | 8.82e-13 | 65.5 |
| MsG0480020596.01.T01 | AT1G70780 | 30.328 | 122 | 79 | 3 | 71 | 188 | 16 | 135 | 8.00e-12 | 60.8 |
Find 51 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTTCTTCAAGCTTCTT+TGG | 0.205520 | 4:-44367043 | None:intergenic |
| AATGAGAAGCTTAAGGAAAT+TGG | 0.265022 | 4:+44366998 | MsG0480020596.01.T01:CDS |
| GCCGACGAAGTTACTCATTA+AGG | 0.295975 | 4:+44366533 | MsG0480020596.01.T01:CDS |
| GAGTAACTTCGTCGGCTGTC+TGG | 0.327050 | 4:-44366526 | None:intergenic |
| CACACTTCTGCAACACTGTC+CGG | 0.327283 | 4:+44366414 | MsG0480020596.01.T01:CDS |
| GCTTCCTTCGACGGCAAGAT+TGG | 0.327598 | 4:-44366666 | None:intergenic |
| TTGCCGCACGCTTCCTGTCC+TGG | 0.374159 | 4:-44366476 | None:intergenic |
| TAAACGACGCCGTTACGTTA+TGG | 0.389603 | 4:-44367078 | None:intergenic |
| AGATAGAAATGAGAAGCTTA+AGG | 0.392238 | 4:+44366991 | MsG0480020596.01.T01:CDS |
| ACAAGGTCCGGCATAGTCTT+TGG | 0.414724 | 4:-44366453 | None:intergenic |
| ACACTTCTGCAACACTGTCC+GGG | 0.435674 | 4:+44366415 | MsG0480020596.01.T01:CDS |
| GAGTTTCCACATGGCTGTTA+CGG | 0.438950 | 4:-44366347 | None:intergenic |
| ATTTGATAGCGGAGGCTGTA+AGG | 0.439277 | 4:+44366619 | MsG0480020596.01.T01:CDS |
| ACTCATTAAGGTTACGATGA+TGG | 0.455220 | 4:+44366545 | MsG0480020596.01.T01:CDS |
| CTCATTAAGGTTACGATGAT+GGG | 0.455912 | 4:+44366546 | MsG0480020596.01.T01:CDS |
| AGTAACTTCGTCGGCTGTCT+GGG | 0.474432 | 4:-44366525 | None:intergenic |
| CACTGTCCGGGGCAAAACTC+CGG | 0.481170 | 4:+44366427 | MsG0480020596.01.T01:CDS |
| CACGCTTCCTGTCCTGGACA+AGG | 0.482528 | 4:-44366470 | None:intergenic |
| TTCCTGTCCTGGACAAGGTC+CGG | 0.485224 | 4:-44366465 | None:intergenic |
| GGCAATGACTTCTTCGCCAC+CGG | 0.515088 | 4:+44366494 | MsG0480020596.01.T01:CDS |
| GTTACGATGATGGGCAGCCT+TGG | 0.521614 | 4:+44366555 | MsG0480020596.01.T01:CDS |
| TGCCGGACCTTGTCCAGGAC+AGG | 0.523940 | 4:+44366463 | MsG0480020596.01.T01:CDS |
| GACTATGCCGGACCTTGTCC+AGG | 0.528186 | 4:+44366458 | MsG0480020596.01.T01:CDS |
| CTCTCCGGTGAGTTTCCACA+TGG | 0.533759 | 4:-44366356 | None:intergenic |
| TCTCTGTTAATCTTCCTCTC+CGG | 0.534835 | 4:-44366371 | None:intergenic |
| ATGACGATGGAGTCGACGGT+TGG | 0.536486 | 4:+44366594 | MsG0480020596.01.T01:CDS |
| CCGGCATAGTCTTTGGCCGC+CGG | 0.545096 | 4:-44366446 | None:intergenic |
| AAGCAAGAAGCTTCCTTCGA+CGG | 0.546345 | 4:-44366675 | None:intergenic |
| GTAAGGTTGTATGTTAAAGA+AGG | 0.550051 | 4:+44366636 | MsG0480020596.01.T01:CDS |
| TTTCCACATGGCTGTTACGG+TGG | 0.552551 | 4:-44366344 | None:intergenic |
| CCGTCCAATCTTGCCGTCGA+AGG | 0.553306 | 4:+44366662 | MsG0480020596.01.T01:CDS |
| CATCGTCATTAACACTTGCA+CGG | 0.554830 | 4:-44366580 | None:intergenic |
| ATCGTCATTAACACTTGCAC+GGG | 0.561873 | 4:-44366579 | None:intergenic |
| AGCTTAAGGAAATTGGATCA+AGG | 0.569028 | 4:+44367005 | MsG0480020596.01.T01:CDS |
| CCTTCGACGGCAAGATTGGA+CGG | 0.570300 | 4:-44366662 | None:intergenic |
| CACTTCTGCAACACTGTCCG+GGG | 0.582028 | 4:+44366416 | MsG0480020596.01.T01:CDS |
| GTTAATGACGATGGAGTCGA+CGG | 0.597176 | 4:+44366590 | MsG0480020596.01.T01:CDS |
| CCGGCGGCCAAAGACTATGC+CGG | 0.600487 | 4:+44366446 | MsG0480020596.01.T01:CDS |
| TTAACACTTGCACGGGACCA+AGG | 0.603739 | 4:-44366572 | None:intergenic |
| ACAGCCATGTGGAAACTCAC+CGG | 0.607844 | 4:+44366352 | MsG0480020596.01.T01:CDS |
| CGTGCAAGTGTTAATGACGA+TGG | 0.614536 | 4:+44366581 | MsG0480020596.01.T01:CDS |
| AAGCTTGAAGAAAGTGACAA+TGG | 0.627431 | 4:+44367049 | MsG0480020596.01.T01:CDS |
| ACCTTAATGAGTAACTTCGT+CGG | 0.631958 | 4:-44366534 | None:intergenic |
| GGTTGGAGATTTGATAGCGG+AGG | 0.649039 | 4:+44366611 | MsG0480020596.01.T01:CDS |
| TGTCCAGGACAGGAAGCGTG+CGG | 0.659036 | 4:+44366473 | MsG0480020596.01.T01:CDS |
| CTTGAAGAAAGTGACAATGG+TGG | 0.660090 | 4:+44367052 | MsG0480020596.01.T01:CDS |
| TGGTGGAGACCATAACGTAA+CGG | 0.684404 | 4:+44367069 | MsG0480020596.01.T01:CDS |
| TGTCCGGGGCAAAACTCCGG+CGG | 0.695006 | 4:+44366430 | MsG0480020596.01.T01:CDS |
| CATGTGGAAACTCACCGGAG+AGG | 0.696044 | 4:+44366357 | MsG0480020596.01.T01:CDS |
| AAACCACCGTAACAGCCATG+TGG | 0.698169 | 4:+44366341 | MsG0480020596.01.T01:CDS |
| GACGGTTGGAGATTTGATAG+CGG | 0.725699 | 4:+44366608 | MsG0480020596.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTAGTTATTATTTTTTGT+TGG | + | Chr4:44366935-44366954 | MsG0480020596.01.T01:intron | 15.0% |
| !!! | TATTAGGTCTTTATTTTTTT+TGG | + | Chr4:44366865-44366884 | MsG0480020596.01.T01:intron | 15.0% |
| !! | TGAACTATGAAAACTAAAAT+TGG | - | Chr4:44366746-44366765 | None:intergenic | 20.0% |
| !!! | AGTTATTATTTTTTGTTGGA+GGG | + | Chr4:44366939-44366958 | MsG0480020596.01.T01:intron | 20.0% |
| !!! | TAGTTATTATTTTTTGTTGG+AGG | + | Chr4:44366938-44366957 | MsG0480020596.01.T01:intron | 20.0% |
| ! | ACTAGAACAACGTAAATATT+AGG | + | Chr4:44366849-44366868 | MsG0480020596.01.T01:intron | 25.0% |
| AATGAGAAGCTTAAGGAAAT+TGG | + | Chr4:44366998-44367017 | MsG0480020596.01.T01:CDS | 30.0% | |
| AGATAGAAATGAGAAGCTTA+AGG | + | Chr4:44366991-44367010 | MsG0480020596.01.T01:CDS | 30.0% | |
| GTAAGGTTGTATGTTAAAGA+AGG | + | Chr4:44366636-44366655 | MsG0480020596.01.T01:CDS | 30.0% | |
| TATGACGTATCTAATTTCTC+TGG | + | Chr4:44366810-44366829 | MsG0480020596.01.T01:intron | 30.0% | |
| ! | GAGAAATCATCATCTTTTCA+TGG | + | Chr4:44366390-44366409 | MsG0480020596.01.T01:CDS | 30.0% |
| !!! | TTGATTTGTTTTATGAGTGC+AGG | + | Chr4:44366965-44366984 | MsG0480020596.01.T01:intron | 30.0% |
| AAGCTTGAAGAAAGTGACAA+TGG | + | Chr4:44367049-44367068 | MsG0480020596.01.T01:CDS | 35.0% | |
| ACCTTAATGAGTAACTTCGT+CGG | - | Chr4:44366537-44366556 | None:intergenic | 35.0% | |
| ACTCATTAAGGTTACGATGA+TGG | + | Chr4:44366545-44366564 | MsG0480020596.01.T01:CDS | 35.0% | |
| AGCTTAAGGAAATTGGATCA+AGG | + | Chr4:44367005-44367024 | MsG0480020596.01.T01:CDS | 35.0% | |
| CTCATTAAGGTTACGATGAT+GGG | + | Chr4:44366546-44366565 | MsG0480020596.01.T01:CDS | 35.0% | |
| TCACTTTCTTCAAGCTTCTT+TGG | - | Chr4:44367046-44367065 | None:intergenic | 35.0% | |
| ! | CAAGTTGAAAAAGTGAGCAA+AGG | + | Chr4:44367115-44367134 | MsG0480020596.01.T01:CDS | 35.0% |
| ! | GAAAAAGTGAGCAAAGGTTT+TGG | + | Chr4:44367121-44367140 | MsG0480020596.01.T01:CDS | 35.0% |
| !! | GCAAAGGTTTTGGTCTTTTA+AGG | + | Chr4:44367131-44367150 | MsG0480020596.01.T01:CDS | 35.0% |
| ATCGTCATTAACACTTGCAC+GGG | - | Chr4:44366582-44366601 | None:intergenic | 40.0% | |
| CATCGTCATTAACACTTGCA+CGG | - | Chr4:44366583-44366602 | None:intergenic | 40.0% | |
| CTTGAAGAAAGTGACAATGG+TGG | + | Chr4:44367052-44367071 | MsG0480020596.01.T01:CDS | 40.0% | |
| GTACCATTGTAGATGCTCTT+AGG | + | Chr4:44366890-44366909 | MsG0480020596.01.T01:intron | 40.0% | |
| TCTCTGTTAATCTTCCTCTC+CGG | - | Chr4:44366374-44366393 | None:intergenic | 40.0% | |
| !! | AGACCTAAGAGCATCTACAA+TGG | - | Chr4:44366896-44366915 | None:intergenic | 40.0% |
| !!! | GCTCACTTTTTCAACTTGTC+TGG | - | Chr4:44367113-44367132 | None:intergenic | 40.0% |
| AAGCAAGAAGCTTCCTTCGA+CGG | - | Chr4:44366678-44366697 | None:intergenic | 45.0% | |
| CGTGCAAGTGTTAATGACGA+TGG | + | Chr4:44366581-44366600 | MsG0480020596.01.T01:CDS | 45.0% | |
| GACGGTTGGAGATTTGATAG+CGG | + | Chr4:44366608-44366627 | MsG0480020596.01.T01:CDS | 45.0% | |
| GAGTTTCCACATGGCTGTTA+CGG | - | Chr4:44366350-44366369 | None:intergenic | 45.0% | |
| GCCGACGAAGTTACTCATTA+AGG | + | Chr4:44366533-44366552 | MsG0480020596.01.T01:CDS | 45.0% | |
| GTTAATGACGATGGAGTCGA+CGG | + | Chr4:44366590-44366609 | MsG0480020596.01.T01:CDS | 45.0% | |
| TAAACGACGCCGTTACGTTA+TGG | - | Chr4:44367081-44367100 | None:intergenic | 45.0% | |
| TGGTGGAGACCATAACGTAA+CGG | + | Chr4:44367069-44367088 | MsG0480020596.01.T01:CDS | 45.0% | |
| !! | ATTTGATAGCGGAGGCTGTA+AGG | + | Chr4:44366619-44366638 | MsG0480020596.01.T01:CDS | 45.0% |
| AAACCACCGTAACAGCCATG+TGG | + | Chr4:44366341-44366360 | MsG0480020596.01.T01:CDS | 50.0% | |
| ACAAGGTCCGGCATAGTCTT+TGG | - | Chr4:44366456-44366475 | None:intergenic | 50.0% | |
| ACACTTCTGCAACACTGTCC+GGG | + | Chr4:44366415-44366434 | MsG0480020596.01.T01:CDS | 50.0% | |
| ACAGCCATGTGGAAACTCAC+CGG | + | Chr4:44366352-44366371 | MsG0480020596.01.T01:CDS | 50.0% | |
| CACACTTCTGCAACACTGTC+CGG | + | Chr4:44366414-44366433 | MsG0480020596.01.T01:CDS | 50.0% | |
| GGCTGTCTGGGAAAAAACTC+CGG | - | Chr4:44366516-44366535 | None:intergenic | 50.0% | |
| TGTCTGGGAAAAAACTCCGG+TGG | - | Chr4:44366513-44366532 | None:intergenic | 50.0% | |
| TTAACACTTGCACGGGACCA+AGG | - | Chr4:44366575-44366594 | None:intergenic | 50.0% | |
| TTTCCACATGGCTGTTACGG+TGG | - | Chr4:44366347-44366366 | None:intergenic | 50.0% | |
| ! | AGTAACTTCGTCGGCTGTCT+GGG | - | Chr4:44366528-44366547 | None:intergenic | 50.0% |
| !! | GGTTGGAGATTTGATAGCGG+AGG | + | Chr4:44366611-44366630 | MsG0480020596.01.T01:CDS | 50.0% |
| ATGACGATGGAGTCGACGGT+TGG | + | Chr4:44366594-44366613 | MsG0480020596.01.T01:CDS | 55.0% | |
| CACTTCTGCAACACTGTCCG+GGG | + | Chr4:44366416-44366435 | MsG0480020596.01.T01:CDS | 55.0% | |
| CATGTGGAAACTCACCGGAG+AGG | + | Chr4:44366357-44366376 | MsG0480020596.01.T01:CDS | 55.0% | |
| CCTTCGACGGCAAGATTGGA+CGG | - | Chr4:44366665-44366684 | None:intergenic | 55.0% | |
| CTCTCCGGTGAGTTTCCACA+TGG | - | Chr4:44366359-44366378 | None:intergenic | 55.0% | |
| GCTTCCTTCGACGGCAAGAT+TGG | - | Chr4:44366669-44366688 | None:intergenic | 55.0% | |
| GGCAATGACTTCTTCGCCAC+CGG | + | Chr4:44366494-44366513 | MsG0480020596.01.T01:CDS | 55.0% | |
| TTCCTGTCCTGGACAAGGTC+CGG | - | Chr4:44366468-44366487 | None:intergenic | 55.0% | |
| ! | GAGTAACTTCGTCGGCTGTC+TGG | - | Chr4:44366529-44366548 | None:intergenic | 55.0% |
| !! | GTTACGATGATGGGCAGCCT+TGG | + | Chr4:44366555-44366574 | MsG0480020596.01.T01:CDS | 55.0% |
| CACGCTTCCTGTCCTGGACA+AGG | - | Chr4:44366473-44366492 | None:intergenic | 60.0% | |
| CACTGTCCGGGGCAAAACTC+CGG | + | Chr4:44366427-44366446 | MsG0480020596.01.T01:CDS | 60.0% | |
| CCGTCCAATCTTGCCGTCGA+AGG | + | Chr4:44366662-44366681 | MsG0480020596.01.T01:CDS | 60.0% | |
| GACTATGCCGGACCTTGTCC+AGG | + | Chr4:44366458-44366477 | MsG0480020596.01.T01:CDS | 60.0% | |
| ! | TGTCCAGGACAGGAAGCGTG+CGG | + | Chr4:44366473-44366492 | MsG0480020596.01.T01:CDS | 60.0% |
| CCGGCATAGTCTTTGGCCGC+CGG | - | Chr4:44366449-44366468 | None:intergenic | 65.0% | |
| CCGGCGGCCAAAGACTATGC+CGG | + | Chr4:44366446-44366465 | MsG0480020596.01.T01:CDS | 65.0% | |
| TGCCGGACCTTGTCCAGGAC+AGG | + | Chr4:44366463-44366482 | MsG0480020596.01.T01:CDS | 65.0% | |
| TGTCCGGGGCAAAACTCCGG+CGG | + | Chr4:44366430-44366449 | MsG0480020596.01.T01:CDS | 65.0% | |
| TTGCCGCACGCTTCCTGTCC+TGG | - | Chr4:44366479-44366498 | None:intergenic | 65.0% | |
| ! | TGGCCGCCGGAGTTTTGCCC+CGG | - | Chr4:44366436-44366455 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 44366327 | 44367174 | 44366327 | ID=MsG0480020596.01;Name=MsG0480020596.01 |
| Chr4 | mRNA | 44366327 | 44367174 | 44366327 | ID=MsG0480020596.01.T01;Parent=MsG0480020596.01;Name=MsG0480020596.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|2|0|196 |
| Chr4 | exon | 44366327 | 44366729 | 44366327 | ID=MsG0480020596.01.T01:exon:13865;Parent=MsG0480020596.01.T01 |
| Chr4 | exon | 44366987 | 44367174 | 44366987 | ID=MsG0480020596.01.T01:exon:13866;Parent=MsG0480020596.01.T01 |
| Chr4 | CDS | 44366327 | 44366729 | 44366327 | ID=MsG0480020596.01.T01:cds;Parent=MsG0480020596.01.T01 |
| Chr4 | CDS | 44366987 | 44367174 | 44366987 | ID=MsG0480020596.01.T01:cds;Parent=MsG0480020596.01.T01 |
| Gene Sequence |
| Protein sequence |
