AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001137.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001137.01.T03 MTR_1g031740 83.673 147 16 3 1 141 1 145 7.13e-77 226
MsG0180001137.01.T02 MTR_1g031740 87.166 187 15 4 1 181 1 184 8.89e-106 301
MsG0180001137.01.T01 MTR_1g031740 81.622 185 12 4 1 164 1 184 1.67e-98 282
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001137.01.T02 AT2G01590 46.281 121 54 3 63 181 63 174 1.30e-30 110
MsG0180001137.01.T02 AT2G01590 46.281 121 54 3 63 181 63 174 1.33e-30 110
MsG0180001137.01.T01 AT2G01590 45.763 118 56 3 49 164 63 174 1.85e-29 106
MsG0180001137.01.T01 AT2G01590 45.763 118 56 3 49 164 63 174 1.93e-29 106

Find 56 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATGGATGATGCCAATT+TGG 0.179324 1:+16442659 MsG0180001137.01.T01:CDS
GAGGAGGAGAATCTGGGTTT+TGG 0.221469 1:-16440983 None:intergenic
GGAGAGTGGCTGGGTGAAAA+TGG 0.232098 1:+16441434 MsG0180001137.01.T01:CDS
GAAGAAGGAGGAGGAGAATC+TGG 0.234398 1:-16440990 None:intergenic
CGTTACCAGTTGCTACTTAC+TGG 0.257231 1:-16441483 None:intergenic
TGATGACTCCAGAAGCTATT+AGG 0.284836 1:-16442693 None:intergenic
CGTCGACGGGGAAGCTTGTT+TGG 0.294761 1:-16441089 None:intergenic
GAATAATTGTAAATTACTTA+AGG 0.307751 1:+16442784 MsG0180001137.01.T01:three_prime_UTR
TCAATGGATGATGCCAATTT+GGG 0.342444 1:+16442660 MsG0180001137.01.T01:CDS
AGGAATGATATGGCCCAAAT+TGG 0.351556 1:-16442673 None:intergenic
AATAATTGTAAATTACTTAA+GGG 0.357061 1:+16442785 MsG0180001137.01.T01:three_prime_UTR
GACCACGATGGATTTGTTCT+TGG 0.365556 1:+16441367 MsG0180001137.01.T01:CDS
TGTTGCAGGAAGAGGAATTC+TGG 0.376018 1:+16442627 MsG0180001137.01.T01:intron
ACCACGATGGATTTGTTCTT+GGG 0.379690 1:+16441368 MsG0180001137.01.T01:CDS
AGAAGCTATTAGGAATGATA+TGG 0.381051 1:-16442683 None:intergenic
GAGAGTGGCTGGGTGAAAAT+GGG 0.391269 1:+16441435 MsG0180001137.01.T01:CDS
GGTGTTAGTGGAGCGAAATC+TGG 0.391808 1:-16441462 None:intergenic
ATTAGTAATAAGAATGGGTT+TGG 0.396058 1:-16440949 None:intergenic
TTCTGGTGTTTGCATTTCAA+TGG 0.404184 1:+16442644 MsG0180001137.01.T01:CDS
TTGCTACTTACTGGTGTTAG+TGG 0.404594 1:-16441474 None:intergenic
TTGGTTTGTTTGGGTGAAGA+AGG 0.439191 1:-16441005 None:intergenic
ATTTAAACTGTTGCAGGAAG+AGG 0.450916 1:+16442619 MsG0180001137.01.T01:intron
GAGGGAAACAGGAGAGTGGC+TGG 0.452230 1:+16441424 MsG0180001137.01.T01:CDS
TCAATTTGCATGAGCGAAGA+TGG 0.459616 1:-16441119 None:intergenic
AGAAGGAGGTCATCAAGAAA+AGG 0.462888 1:-16442733 None:intergenic
ATATCATTCCTAATAGCTTC+TGG 0.464043 1:+16442685 MsG0180001137.01.T01:CDS
AAGAAGGAGGAGGAGAATCT+GGG 0.467707 1:-16440989 None:intergenic
GTTGCATTAGTAATAAGAAT+GGG 0.473568 1:-16440954 None:intergenic
AGTTGCATTAGTAATAAGAA+TGG 0.478851 1:-16440955 None:intergenic
AGATGGTGATGGTCGTCGAC+GGG 0.479444 1:-16441102 None:intergenic
TTCTTGGGACAAGTATTTGA+AGG 0.485835 1:+16441383 MsG0180001137.01.T01:CDS
ATTGAACGTGCCCTTGGCGC+TGG 0.500974 1:+16441137 MsG0180001137.01.T01:CDS
TCAAGAAAAGGGACACTGAA+TGG 0.508495 1:-16442721 None:intergenic
ATGCAAATTGAACGTGCCCT+TGG 0.511985 1:+16441131 MsG0180001137.01.T01:CDS
GACAGAGCATACTTGAGGTC+AGG 0.519678 1:-16441179 None:intergenic
CTCTGAAGCTACCAGCGCCA+AGG 0.529782 1:-16441148 None:intergenic
GAAGGAGGTCATCAAGAAAA+GGG 0.531359 1:-16442732 None:intergenic
AAATTACTTAAGGGGTTCAA+AGG 0.541176 1:+16442794 MsG0180001137.01.T01:three_prime_UTR
ATAATTGTAAATTACTTAAG+GGG 0.542003 1:+16442786 MsG0180001137.01.T01:three_prime_UTR
GTTTGTTTGGGTGAAGAAGG+AGG 0.558804 1:-16441002 None:intergenic
TGTTTGGGTGAAGAAGGAGG+AGG 0.562290 1:-16440999 None:intergenic
TCTTGGGACAAGTATTTGAA+GGG 0.567555 1:+16441384 MsG0180001137.01.T01:CDS
CGACGGGGAAGCTTGTTTGG+AGG 0.571718 1:-16441086 None:intergenic
AACTGGATGTTCACAGAAGG+AGG 0.580320 1:-16442747 None:intergenic
AAGATGGTGATGGTCGTCGA+CGG 0.586049 1:-16441103 None:intergenic
AGAGTGGCTGGGTGAAAATG+GGG 0.590303 1:+16441436 MsG0180001137.01.T01:CDS
TCTGAAGCTACCAGCGCCAA+GGG 0.590855 1:-16441147 None:intergenic
GTTTGGAGGTAATGAAGTAG+TGG 0.605102 1:-16441072 None:intergenic
AGAAACTGGATGTTCACAGA+AGG 0.608792 1:-16442750 None:intergenic
AGGGAAACAGGAGAGTGGCT+GGG 0.620803 1:+16441425 MsG0180001137.01.T01:CDS
GGCGCTGGTAGCTTCAGAGA+CGG 0.635842 1:+16441152 MsG0180001137.01.T01:CDS
GATGGTGATGGTCGTCGACG+GGG 0.661990 1:-16441101 None:intergenic
AGCTGAGGGAAACAGGAGAG+TGG 0.671817 1:+16441420 MsG0180001137.01.T01:CDS
TGCATGAGCGAAGATGGTGA+TGG 0.732147 1:-16441113 None:intergenic
TCCCAAGAACAAATCCATCG+TGG 0.736351 1:-16441369 None:intergenic
AGACGTAAAGAAGACCACGA+TGG 0.745068 1:+16441355 MsG0180001137.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTGTAAATTACTTAA+GGG + Chr1:16442785-16442804 MsG0180001137.01.T01:three_prime_UTR 10.0%
!! ACTGAATAAATAATAAATAA+AGG - Chr1:16442598-16442617 None:intergenic 10.0%
!! ATAATTGTAAATTACTTAAG+GGG + Chr1:16442786-16442805 MsG0180001137.01.T01:three_prime_UTR 15.0%
!! GAATAATTGTAAATTACTTA+AGG + Chr1:16442784-16442803 MsG0180001137.01.T01:three_prime_UTR 15.0%
!!! TTGTTTTTTAAATAAGAAAC+TGG + Chr1:16441662-16441681 MsG0180001137.01.T01:intron 15.0%
!! ATAAAAATCCAGAATGAAAT+TGG - Chr1:16441297-16441316 None:intergenic 20.0%
!! ATTTAATAGTAAAAACACGT+TGG + Chr1:16442836-16442855 MsG0180001137.01.T01:three_prime_UTR 20.0%
!! CAGTTTATAACATTATGAAT+AGG + Chr1:16441226-16441245 MsG0180001137.01.T01:intron 20.0%
!! TAGAAAATTACAATGTTAAG+TGG - Chr1:16442545-16442564 None:intergenic 20.0%
!! TGTTAAAGAGACAAAAAATA+AGG - Chr1:16441515-16441534 None:intergenic 20.0%
!!! CACTTTTAACATTATGAAAT+TGG - Chr1:16441272-16441291 None:intergenic 20.0%
!!! TATTTTTTGTCTCTTTAACA+AGG + Chr1:16441515-16441534 MsG0180001137.01.T01:intron 20.0%
!!! TGACTTTCTAGAAAAATAAT+TGG - Chr1:16442212-16442231 None:intergenic 20.0%
! AAATAATTGGTCACACAATA+CGG - Chr1:16442199-16442218 None:intergenic 25.0%
! AAGGAATAAAATGACTTTCT+TGG - Chr1:16442391-16442410 None:intergenic 25.0%
! AGATTATTACTTCTTACAAC+TGG - Chr1:16441720-16441739 None:intergenic 25.0%
! AGTTGCATTAGTAATAAGAA+TGG - Chr1:16440958-16440977 None:intergenic 25.0%
! GTTGCATTAGTAATAAGAAT+GGG - Chr1:16440957-16440976 None:intergenic 25.0%
! GTTGTAAGAAGTAATAATCT+TGG + Chr1:16441720-16441739 MsG0180001137.01.T01:intron 25.0%
! TGCTACAATTCAAAAAATGT+TGG - Chr1:16442509-16442528 None:intergenic 25.0%
! TTATAACATTATGAATAGGC+AGG + Chr1:16441230-16441249 MsG0180001137.01.T01:intron 25.0%
! TTCAATCTACAAAAAGAAAC+TGG - Chr1:16442767-16442786 None:intergenic 25.0%
!! ATTAGTAATAAGAATGGGTT+TGG - Chr1:16440952-16440971 None:intergenic 25.0%
!! TTGAATTGTAGCATATTTTG+CGG + Chr1:16442516-16442535 MsG0180001137.01.T01:intron 25.0%
AAATTACTTAAGGGGTTCAA+AGG + Chr1:16442794-16442813 MsG0180001137.01.T01:three_prime_UTR 30.0%
AGAAGCTATTAGGAATGATA+TGG - Chr1:16442686-16442705 None:intergenic 30.0%
ATATCATTCCTAATAGCTTC+TGG + Chr1:16442685-16442704 MsG0180001137.01.T01:CDS 30.0%
TAGATGTCTCATATTGTTGA+GGG - Chr1:16441908-16441927 None:intergenic 30.0%
! AATGTTGGTAAATGAAAGAG+TGG - Chr1:16442494-16442513 None:intergenic 30.0%
! ATAAGTGAAGGTTTTTGCTT+TGG - Chr1:16441038-16441057 None:intergenic 30.0%
! ATGTTGGTAAATGAAAGAGT+GGG - Chr1:16442493-16442512 None:intergenic 30.0%
! TATCTAGTTCAAACACTACA+TGG + Chr1:16441823-16441842 MsG0180001137.01.T01:intron 30.0%
!! CATGTCTTTTGCTTTGTTAT+AGG + Chr1:16441545-16441564 MsG0180001137.01.T01:intron 30.0%
!! TAATGAAGTAGTGGAGTTTT+TGG - Chr1:16441066-16441085 None:intergenic 30.0%
!!! TTTTTGGAGCTTATAAGTGA+AGG - Chr1:16441050-16441069 None:intergenic 30.0%
AAATCCTCAAGATAACTTGG+AGG + Chr1:16442441-16442460 MsG0180001137.01.T01:intron 35.0%
AATCCTCAAGATAACTTGGA+GGG + Chr1:16442442-16442461 MsG0180001137.01.T01:intron 35.0%
AATTTGAGGGCTTACTACAA+AGG - Chr1:16442158-16442177 None:intergenic 35.0%
AGGAAATCCTCAAGATAACT+TGG + Chr1:16442438-16442457 MsG0180001137.01.T01:intron 35.0%
AGGAATCTGCTAGAATTTGA+GGG - Chr1:16442171-16442190 None:intergenic 35.0%
ATGTTGTCGAGAAATGTTCA+AGG - Chr1:16442254-16442273 None:intergenic 35.0%
ATTTAAACTGTTGCAGGAAG+AGG + Chr1:16442619-16442638 MsG0180001137.01.T01:intron 35.0%
ATTTGAGGGCTTACTACAAA+GGG - Chr1:16442157-16442176 None:intergenic 35.0%
CATAAGCAAAACATTGCAGA+GGG - Chr1:16440912-16440931 None:intergenic 35.0%
CTAGATGTCTCATATTGTTG+AGG - Chr1:16441909-16441928 None:intergenic 35.0%
GCTAATGGTAGAGATATGAA+AGG - Chr1:16442410-16442429 None:intergenic 35.0%
GTGAGGAAAAACACAAGTTA+TGG + Chr1:16441577-16441596 MsG0180001137.01.T01:intron 35.0%
GTTATAGGTGATTATGAGTG+AGG + Chr1:16441560-16441579 MsG0180001137.01.T01:intron 35.0%
TCAATGGATGATGCCAATTT+GGG + Chr1:16442660-16442679 MsG0180001137.01.T01:CDS 35.0%
TCAGTGATTTAAACTGTTGC+AGG + Chr1:16442613-16442632 MsG0180001137.01.T01:intron 35.0%
TCTTGGGACAAGTATTTGAA+GGG + Chr1:16441384-16441403 MsG0180001137.01.T01:CDS 35.0%
TGTGTCTACATTACACTTGA+AGG + Chr1:16442009-16442028 MsG0180001137.01.T01:intron 35.0%
TTACACTTGAAGGATCATGA+TGG + Chr1:16442019-16442038 MsG0180001137.01.T01:intron 35.0%
TTATCTTGAGGATTTCCTAC+AGG - Chr1:16442436-16442455 None:intergenic 35.0%
TTCAAGTGTAATGTAGACAC+AGG - Chr1:16442010-16442029 None:intergenic 35.0%
TTCAATGGATGATGCCAATT+TGG + Chr1:16442659-16442678 MsG0180001137.01.T01:CDS 35.0%
TTCTGGTGTTTGCATTTCAA+TGG + Chr1:16442644-16442663 MsG0180001137.01.T01:CDS 35.0%
TTCTTGGGACAAGTATTTGA+AGG + Chr1:16441383-16441402 MsG0180001137.01.T01:CDS 35.0%
! AAAGTGCTCCAATTTCATTC+TGG + Chr1:16441286-16441305 MsG0180001137.01.T01:intron 35.0%
! GACAAACATCCAAACTGTTT+TGG + Chr1:16442350-16442369 MsG0180001137.01.T01:intron 35.0%
!! TTTTCTAGAAAGTCAGACCA+AGG + Chr1:16442217-16442236 MsG0180001137.01.T01:intron 35.0%
!!! TTTTTGCTTTGGAGGAAGAT+TGG - Chr1:16441027-16441046 None:intergenic 35.0%
AAACAGACAGAGCATACTTG+AGG - Chr1:16441187-16441206 None:intergenic 40.0%
AATTGGTCACACAATACGGA+GGG - Chr1:16442195-16442214 None:intergenic 40.0%
ACAGAATTGGTGAGAACCTT+TGG - Chr1:16441980-16441999 None:intergenic 40.0%
ACCTTCAACATAGCAATTCC+TGG - Chr1:16442314-16442333 None:intergenic 40.0%
AGAAACTGGATGTTCACAGA+AGG - Chr1:16442753-16442772 None:intergenic 40.0%
AGAAGGAGGTCATCAAGAAA+AGG - Chr1:16442736-16442755 None:intergenic 40.0%
AGGAATGATATGGCCCAAAT+TGG - Chr1:16442676-16442695 None:intergenic 40.0%
AGTGCATCATTGAAGAGACA+CGG - Chr1:16441955-16441974 None:intergenic 40.0%
ATACCCTCCAAGTTATCTTG+AGG - Chr1:16442448-16442467 None:intergenic 40.0%
CTATCCATGCCAAAACAGTT+TGG - Chr1:16442362-16442381 None:intergenic 40.0%
GAAGGAGGTCATCAAGAAAA+GGG - Chr1:16442735-16442754 None:intergenic 40.0%
GAGGAATCTGCTAGAATTTG+AGG - Chr1:16442172-16442191 None:intergenic 40.0%
GCATAAGCAAAACATTGCAG+AGG - Chr1:16440913-16440932 None:intergenic 40.0%
GTTTGGAGGTAATGAAGTAG+TGG - Chr1:16441075-16441094 None:intergenic 40.0%
TAACACCAGTAAGTAGCAAC+TGG + Chr1:16441478-16441497 MsG0180001137.01.T01:intron 40.0%
TAATTGGTCACACAATACGG+AGG - Chr1:16442196-16442215 None:intergenic 40.0%
TCAAGAAAAGGGACACTGAA+TGG - Chr1:16442724-16442743 None:intergenic 40.0%
TCAATTTGCATGAGCGAAGA+TGG - Chr1:16441122-16441141 None:intergenic 40.0%
TCTCGAGATCTACAAGTCTT+TGG + Chr1:16441799-16441818 MsG0180001137.01.T01:intron 40.0%
TGATGACTCCAGAAGCTATT+AGG - Chr1:16442696-16442715 None:intergenic 40.0%
TTATGTGAAGCTGCAAAGAG+AGG + Chr1:16440862-16440881 MsG0180001137.01.T02:five_prime_UTR 40.0%
TTCAATGATGCACTTGCCAA+AGG + Chr1:16441961-16441980 MsG0180001137.01.T01:intron 40.0%
TTTCTCGACAACATAGCATC+CGG + Chr1:16442260-16442279 MsG0180001137.01.T01:intron 40.0%
TTTGACCATTGTCCAACCAA+GGG + Chr1:16442082-16442101 MsG0180001137.01.T01:intron 40.0%
TTTGAGGGCTTACTACAAAG+GGG - Chr1:16442156-16442175 None:intergenic 40.0%
! ACCACGATGGATTTGTTCTT+GGG + Chr1:16441368-16441387 MsG0180001137.01.T01:CDS 40.0%
! AGTGAAGGTTTTTGCTTTGG+AGG - Chr1:16441035-16441054 None:intergenic 40.0%
! ATTTCCTACAGGTTGGCTAA+TGG - Chr1:16442425-16442444 None:intergenic 40.0%
! TTGCTACTTACTGGTGTTAG+TGG - Chr1:16441477-16441496 None:intergenic 40.0%
!! GGAGGAAGATTGGTTTGTTT+GGG - Chr1:16441017-16441036 None:intergenic 40.0%
!! TGGAGGAAGATTGGTTTGTT+TGG - Chr1:16441018-16441037 None:intergenic 40.0%
!! TTGGTTTGTTTGGGTGAAGA+AGG - Chr1:16441008-16441027 None:intergenic 40.0%
!!! ACATCCAAACTGTTTTGGCA+TGG + Chr1:16442355-16442374 MsG0180001137.01.T01:intron 40.0%
AAACCACCCAACACAATGCA+GGG + Chr1:16441859-16441878 MsG0180001137.01.T01:intron 45.0%
AACCAAGGGGGGTCTTAAAT+TGG + Chr1:16442096-16442115 MsG0180001137.01.T01:intron 45.0%
AACCTGCTCAACTTTGCATC+TGG - Chr1:16442064-16442083 None:intergenic 45.0%
AACTGGATGTTCACAGAAGG+AGG - Chr1:16442750-16442769 None:intergenic 45.0%
AAGAAGGAGGAGGAGAATCT+GGG - Chr1:16440992-16441011 None:intergenic 45.0%
ACCAAGGGGGGTCTTAAATT+GGG + Chr1:16442097-16442116 MsG0180001137.01.T01:intron 45.0%
AGACGTAAAGAAGACCACGA+TGG + Chr1:16441355-16441374 MsG0180001137.01.T01:CDS 45.0%
ATGCAAATTGAACGTGCCCT+TGG + Chr1:16441131-16441150 MsG0180001137.01.T01:CDS 45.0%
ATTGGTCACACAATACGGAG+GGG - Chr1:16442194-16442213 None:intergenic 45.0%
ATTGTTGAGGGAGAGGCAAT+AGG - Chr1:16441896-16441915 None:intergenic 45.0%
CAGAAAAAGCTGAGGGAAAC+AGG + Chr1:16441413-16441432 MsG0180001137.01.T01:CDS 45.0%
CTCAAGGTTTATCATGCACC+CGG - Chr1:16442282-16442301 None:intergenic 45.0%
CTTGAGGATTTCCTACAGGT+TGG - Chr1:16442432-16442451 None:intergenic 45.0%
GACTGTGCAGAAAAAGCTGA+GGG + Chr1:16441406-16441425 MsG0180001137.01.T01:CDS 45.0%
GCCAGGAATTGCTATGTTGA+AGG + Chr1:16442310-16442329 MsG0180001137.01.T01:intron 45.0%
GTAGATCTCGAGACAAGCAA+TGG - Chr1:16441792-16441811 None:intergenic 45.0%
GTCAGACCAAGGAAAATACC+TGG + Chr1:16442228-16442247 MsG0180001137.01.T01:intron 45.0%
GTCTCATATTGTTGAGGGAG+AGG - Chr1:16441903-16441922 None:intergenic 45.0%
GTTTGACCATTGTCCAACCA+AGG + Chr1:16442081-16442100 MsG0180001137.01.T01:intron 45.0%
GTTTGTTTGGGTGAAGAAGG+AGG - Chr1:16441005-16441024 None:intergenic 45.0%
TCCCAAGAACAAATCCATCG+TGG - Chr1:16441372-16441391 None:intergenic 45.0%
TCTACCATTAGCCAACCTGT+AGG + Chr1:16442418-16442437 MsG0180001137.01.T01:intron 45.0%
TGTTGCAGGAAGAGGAATTC+TGG + Chr1:16442627-16442646 MsG0180001137.01.T01:intron 45.0%
TTCCAGATGCAAAGTTGAGC+AGG + Chr1:16442059-16442078 MsG0180001137.01.T01:intron 45.0%
TTCTCGACAACATAGCATCC+GGG + Chr1:16442261-16442280 MsG0180001137.01.T01:intron 45.0%
TTGACCATTGTCCAACCAAG+GGG + Chr1:16442083-16442102 MsG0180001137.01.T01:intron 45.0%
! AATTTAAGACCCCCCTTGGT+TGG - Chr1:16442097-16442116 None:intergenic 45.0%
! AGGAGGAGAATCTGGGTTTT+GGG - Chr1:16440985-16441004 None:intergenic 45.0%
! CGTTACCAGTTGCTACTTAC+TGG - Chr1:16441486-16441505 None:intergenic 45.0%
! GACCACGATGGATTTGTTCT+TGG + Chr1:16441367-16441386 MsG0180001137.01.T01:CDS 45.0%
! TCAAGGCCAGGTATTTTCCT+TGG - Chr1:16442237-16442256 None:intergenic 45.0%
!! ATTGTGTTGGGTGGTTTGCT+TGG - Chr1:16441856-16441875 None:intergenic 45.0%
!! TTGTGTTGGGTGGTTTGCTT+GGG - Chr1:16441855-16441874 None:intergenic 45.0%
AACCTTGAGGCATGTTTGCC+AGG + Chr1:16442293-16442312 MsG0180001137.01.T01:intron 50.0%
AGAGGCAATAGGTCTGCTGA+AGG - Chr1:16441885-16441904 None:intergenic 50.0%
AGAGTGGCTGGGTGAAAATG+GGG + Chr1:16441436-16441455 MsG0180001137.01.T01:CDS 50.0%
CAAACCACCCAACACAATGC+AGG + Chr1:16441858-16441877 MsG0180001137.01.T01:intron 50.0%
CACAGGCTGCAACACAGAAT+TGG - Chr1:16441993-16442012 None:intergenic 50.0%
CGAGGCCTACAATTTAGCGA+AGG - Chr1:16441768-16441787 None:intergenic 50.0%
CGAGGCCTTCGCTAAATTGT+AGG + Chr1:16441760-16441779 MsG0180001137.01.T01:intron 50.0%
CGGGTGCATGATAAACCTTG+AGG + Chr1:16442280-16442299 MsG0180001137.01.T01:intron 50.0%
GAAGAAGGAGGAGGAGAATC+TGG - Chr1:16440993-16441012 None:intergenic 50.0%
GACAGAGCATACTTGAGGTC+AGG - Chr1:16441182-16441201 None:intergenic 50.0%
GAGAGTGGCTGGGTGAAAAT+GGG + Chr1:16441435-16441454 MsG0180001137.01.T01:CDS 50.0%
GGACTGTGCAGAAAAAGCTG+AGG + Chr1:16441405-16441424 MsG0180001137.01.T01:CDS 50.0%
GGTGTTAGTGGAGCGAAATC+TGG - Chr1:16441465-16441484 None:intergenic 50.0%
GTCGAGAAATGTTCAAGGCC+AGG - Chr1:16442249-16442268 None:intergenic 50.0%
TGAAGGCCCTGCATTGTGTT+GGG - Chr1:16441868-16441887 None:intergenic 50.0%
TGACCATTGTCCAACCAAGG+GGG + Chr1:16442084-16442103 MsG0180001137.01.T01:intron 50.0%
TGCATGAGCGAAGATGGTGA+TGG - Chr1:16441116-16441135 None:intergenic 50.0%
TGTTTGGGTGAAGAAGGAGG+AGG - Chr1:16441002-16441021 None:intergenic 50.0%
TTCCTGGCAAACATGCCTCA+AGG - Chr1:16442298-16442317 None:intergenic 50.0%
! GAGACTAGCTGATGAAGACG+AGG + Chr1:16441742-16441761 MsG0180001137.01.T01:intron 50.0%
! GAGGAGGAGAATCTGGGTTT+TGG - Chr1:16440986-16441005 None:intergenic 50.0%
! GGAGGAGAATCTGGGTTTTG+GGG - Chr1:16440984-16441003 None:intergenic 50.0%
! TCCCAATTTAAGACCCCCCT+TGG - Chr1:16442101-16442120 None:intergenic 50.0%
!! AAGATGGTGATGGTCGTCGA+CGG - Chr1:16441106-16441125 None:intergenic 50.0%
AGCTGAGGGAAACAGGAGAG+TGG + Chr1:16441420-16441439 MsG0180001137.01.T01:CDS 55.0%
AGGGAAACAGGAGAGTGGCT+GGG + Chr1:16441425-16441444 MsG0180001137.01.T01:CDS 55.0%
CTCGAGACAAGCAATGGACG+AGG - Chr1:16441786-16441805 None:intergenic 55.0%
CTGAAGGCCCTGCATTGTGT+TGG - Chr1:16441869-16441888 None:intergenic 55.0%
GACCATTGTCCAACCAAGGG+GGG + Chr1:16442085-16442104 MsG0180001137.01.T01:intron 55.0%
GGAGAGTGGCTGGGTGAAAA+TGG + Chr1:16441434-16441453 MsG0180001137.01.T01:CDS 55.0%
! TCTGAAGCTACCAGCGCCAA+GGG - Chr1:16441150-16441169 None:intergenic 55.0%
!! AGATGGTGATGGTCGTCGAC+GGG - Chr1:16441105-16441124 None:intergenic 55.0%
AGGCCCTGCATTGTGTTGGG+TGG - Chr1:16441865-16441884 None:intergenic 60.0%
ATTGAACGTGCCCTTGGCGC+TGG + Chr1:16441137-16441156 MsG0180001137.01.T01:CDS 60.0%
GACCCCCCTTGGTTGGACAA+TGG - Chr1:16442090-16442109 None:intergenic 60.0%
GAGGGAAACAGGAGAGTGGC+TGG + Chr1:16441424-16441443 MsG0180001137.01.T01:CDS 60.0%
GGTCACACAATACGGAGGGG+AGG - Chr1:16442191-16442210 None:intergenic 60.0%
! CGACGGGGAAGCTTGTTTGG+AGG - Chr1:16441089-16441108 None:intergenic 60.0%
! CGTCGACGGGGAAGCTTGTT+TGG - Chr1:16441092-16441111 None:intergenic 60.0%
!! CTCTGAAGCTACCAGCGCCA+AGG - Chr1:16441151-16441170 None:intergenic 60.0%
!! GATGGTGATGGTCGTCGACG+GGG - Chr1:16441104-16441123 None:intergenic 60.0%
!! GGCGCTGGTAGCTTCAGAGA+CGG + Chr1:16441152-16441171 MsG0180001137.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 16440837 16442884 16440837 ID=MsG0180001137.01;Name=MsG0180001137.01
Chr1 mRNA 16440918 16442884 16440918 ID=MsG0180001137.01.T01;Parent=MsG0180001137.01;Name=MsG0180001137.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.33|0.25|1|0|0|4|125|164
Chr1 exon 16440918 16441018 16440918 ID=MsG0180001137.01.T01:exon:31359;Parent=MsG0180001137.01.T01
Chr1 exon 16441061 16441189 16441061 ID=MsG0180001137.01.T01:exon:31360;Parent=MsG0180001137.01.T01
Chr1 exon 16441346 16441485 16441346 ID=MsG0180001137.01.T01:exon:31361;Parent=MsG0180001137.01.T01
Chr1 exon 16442635 16442884 16442635 ID=MsG0180001137.01.T01:exon:31362;Parent=MsG0180001137.01.T01
Chr1 CDS 16440918 16441018 16440918 ID=MsG0180001137.01.T01:cds;Parent=MsG0180001137.01.T01
Chr1 CDS 16441061 16441189 16441061 ID=MsG0180001137.01.T01:cds;Parent=MsG0180001137.01.T01
Chr1 CDS 16441346 16441485 16441346 ID=MsG0180001137.01.T01:cds;Parent=MsG0180001137.01.T01
Chr1 CDS 16442635 16442759 16442635 ID=MsG0180001137.01.T01:cds;Parent=MsG0180001137.01.T01
Chr1 three_prime_UTR 16442760 16442884 16442760 ID=MsG0180001137.01.T01:three_prime_utr;Parent=MsG0180001137.01.T01
Chr1 mRNA 16440837 16442884 16440837 ID=MsG0180001137.01.T02;Parent=MsG0180001137.01;Name=MsG0180001137.01.T02;_AED=0.34;_eAED=0.34;_QI=81|0.5|0.66|1|0|0|3|125|181
Chr1 exon 16441340 16441485 16441340 ID=MsG0180001137.01.T02:exon:31364;Parent=MsG0180001137.01.T02
Chr1 exon 16442632 16442884 16442632 ID=MsG0180001137.01.T02:exon:31365;Parent=MsG0180001137.01.T02
Chr1 five_prime_UTR 16440837 16440917 16440837 ID=MsG0180001137.01.T02:five_prime_utr;Parent=MsG0180001137.01.T02
Chr1 CDS 16440918 16441189 16440918 ID=MsG0180001137.01.T02:cds;Parent=MsG0180001137.01.T02
Chr1 CDS 16441340 16441485 16441340 ID=MsG0180001137.01.T02:cds;Parent=MsG0180001137.01.T02
Chr1 CDS 16442632 16442759 16442632 ID=MsG0180001137.01.T02:cds;Parent=MsG0180001137.01.T02
Chr1 three_prime_UTR 16442760 16442884 16442760 ID=MsG0180001137.01.T02:three_prime_utr;Parent=MsG0180001137.01.T02
Chr1 mRNA 16440837 16441493 16440837 ID=MsG0180001137.01.T03;Parent=MsG0180001137.01;Name=MsG0180001137.01.T03;_AED=0.39;_eAED=0.39;_QI=81|1|0.5|1|0|0|2|0|141
Chr1 exon 16441340 16441493 16441340 ID=MsG0180001137.01.T03:exon:31366;Parent=MsG0180001137.01.T03
Chr1 five_prime_UTR 16440837 16440917 16440837 ID=MsG0180001137.01.T03:five_prime_utr;Parent=MsG0180001137.01.T03
Chr1 CDS 16440918 16441189 16440918 ID=MsG0180001137.01.T03:cds;Parent=MsG0180001137.01.T03
Chr1 CDS 16441340 16441493 16441340 ID=MsG0180001137.01.T03:cds;Parent=MsG0180001137.01.T03
Gene Sequence

>MsG0180001137.01.T03

ATGTTTTGCTTATGCAACAATCTTTCTATAACCAAACCCATTCTTATTACTAATGCAACTCTTCCCCAAAACCCAGATTCTCCTCCTCCTTCTTCACCCAAACAAACCAATCTTCCTCCAAAGCAAAAACCTTCACTTATAAGCTCCAAAAACTCCACTACTTCATTACCTCCAAACAAGCTTCCCCGTCGACGACCATCACCATCTTCGCTCATGCAAATTGAACGTGCCCTTGGCGCTGGTAGCTTCAGAGACGGTGAACCTGACCTCAAAATGAAGAACGATTCAGACGTAAAGAAGACCACGATGGATTTGTTCTTGGGACAAGTATTTGAAGGGACTGTGCAGAAAAAGCTGAGGGAAACAGGAGAGTGGCTGGGTGAAAATGGGGAGACCAGATTTCGCTCCACTAACACCAGTAAGTAG

>MsG0180001137.01.T02

ATGTTTTGCTTATGCAACAATCTTTCTATAACCAAACCCATTCTTATTACTAATGCAACTCTTCCCCAAAACCCAGATTCTCCTCCTCCTTCTTCACCCAAACAAACCAATCTTCCTCCAAAGCAAAAACCTTCACTTATAAGCTCCAAAAACTCCACTACTTCATTACCTCCAAACAAGCTTCCCCGTCGACGACCATCACCATCTTCGCTCATGCAAATTGAACGTGCCCTTGGCGCTGGTAGCTTCAGAGACGGTGAACCTGACCTCAAAATGAAGAACGATTCAGACGTAAAGAAGACCACGATGGATTTGTTCTTGGGACAAGTATTTGAAGGGACTGTGCAGAAAAAGCTGAGGGAAACAGGAGAGTGGCTGGGTGAAAATGGGGAGACCAGATTTCGCTCCACTAACACCACAGGAAGAGGAATTCTGGTGTTTGCATTTCAATGGATGATGCCAATTTGGGCCATATCATTCCTAATAGCTTCTGGAGTCATCAAATTACCATTCAGTGTCCCTTTTCTTGATGACCTCCTTCTGTGA

>MsG0180001137.01.T01

ATGTTTTGCTTATGCAACAATCTTTCTATAACCAAACCCATTCTTATTACTAATGCAACTCTTCCCCAAAACCCAGATTCTCCTCCTCCTTCTTCACCCAACTCCAAAAACTCCACTACTTCATTACCTCCAAACAAGCTTCCCCGTCGACGACCATCACCATCTTCGCTCATGCAAATTGAACGTGCCCTTGGCGCTGGTAGCTTCAGAGACGGTGAACCTGACCTCAAGAACGATTCAGACGTAAAGAAGACCACGATGGATTTGTTCTTGGGACAAGTATTTGAAGGGACTGTGCAGAAAAAGCTGAGGGAAACAGGAGAGTGGCTGGGTGAAAATGGGGAGACCAGATTTCGCTCCACTAACACCAGAAGAGGAATTCTGGTGTTTGCATTTCAATGGATGATGCCAATTTGGGCCATATCATTCCTAATAGCTTCTGGAGTCATCAAATTACCATTCAGTGTCCCTTTTCTTGATGACCTCCTTCTGTGA

Protein sequence

>MsG0180001137.01.T03

MFCLCNNLSITKPILITNATLPQNPDSPPPSSPKQTNLPPKQKPSLISSKNSTTSLPPNKLPRRRPSPSSLMQIERALGAGSFRDGEPDLKMKNDSDVKKTTMDLFLGQVFEGTVQKKLRETGEWLGENGETRFRSTNTSK*

>MsG0180001137.01.T02

MFCLCNNLSITKPILITNATLPQNPDSPPPSSPKQTNLPPKQKPSLISSKNSTTSLPPNKLPRRRPSPSSLMQIERALGAGSFRDGEPDLKMKNDSDVKKTTMDLFLGQVFEGTVQKKLRETGEWLGENGETRFRSTNTTGRGILVFAFQWMMPIWAISFLIASGVIKLPFSVPFLDDLLL*

>MsG0180001137.01.T01

MFCLCNNLSITKPILITNATLPQNPDSPPPSSPNSKNSTTSLPPNKLPRRRPSPSSLMQIERALGAGSFRDGEPDLKNDSDVKKTTMDLFLGQVFEGTVQKKLRETGEWLGENGETRFRSTNTRRGILVFAFQWMMPIWAISFLIASGVIKLPFSVPFLDDLLL*