AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020854.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020854.01.T01 MTR_4g061090 81.766 351 11 1 18 368 456 753 0.0 548
MsG0480020854.01.T01 MTR_2g093210 75.568 352 33 1 17 368 453 751 0.0 541
MsG0480020854.01.T01 MTR_2g093210 75.568 352 33 1 17 368 413 711 0.0 541
MsG0480020854.01.T01 MTR_4g071070 58.120 351 94 1 18 368 456 753 5.54e-128 387
MsG0480020854.01.T01 MTR_2g093210 70.301 266 26 1 18 283 454 666 1.93e-125 376
MsG0480020854.01.T01 MTR_3g112500 57.229 332 89 1 16 347 443 721 2.67e-123 372
MsG0480020854.01.T01 MTR_2g093210 85.246 61 9 0 18 78 454 514 1.31e-29 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020854.01.T01 AT2G28520 72.113 355 43 5 17 368 454 755 3.81e-177 513
MsG0480020854.01.T01 AT2G21410 59.375 352 90 2 17 368 456 754 2.21e-143 426
MsG0480020854.01.T01 AT4G39080 61.473 353 82 3 17 368 455 754 2.14e-137 411

Find 178 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACAGACATTGTATTTA+TGG 0.092915 4:+49699632 MsG0480020854.01.T01:three_prime_UTR
AATTTGTCTCCCTTGGTTTA+TGG 0.139820 4:+49700239 MsG0480020854.01.T01:three_prime_UTR
CACTATTGTCAATAGATTTC+TGG 0.141498 4:+49699668 MsG0480020854.01.T01:three_prime_UTR
TCTTGACAAGGTAAAATTTC+TGG 0.154044 4:-49699743 None:intergenic
CACTCCATTGAGTTTGTTCT+TGG 0.159404 4:+49698268 MsG0480020854.01.T01:CDS
TGAAGTTTCTTTAATATAAA+AGG 0.184942 4:-49697733 None:intergenic
GTTGTTCTCCTCCTCTTATT+AGG 0.208819 4:+49697093 MsG0480020854.01.T01:CDS
ATCTTCGACTTTGGGCATTA+AGG 0.218922 4:+49698314 MsG0480020854.01.T01:CDS
TGGTTGGGATGGGTAGGTTT+TGG 0.224998 4:+49696471 MsG0480020854.01.T01:CDS
TAAAGTGGGGAAATTGAAAT+TGG 0.236137 4:-49699779 None:intergenic
AGCTTTATGGAGATGTTATT+TGG 0.240092 4:+49695862 MsG0480020854.01.T01:CDS
ATAATTTGTGGGAACCAATT+TGG 0.243283 4:+49700310 MsG0480020854.01.T01:three_prime_UTR
ATGAAGATGTCCATTCTATT+TGG 0.261369 4:+49697224 MsG0480020854.01.T01:CDS
CCAGCGACTAGGAAGCTTTA+TGG 0.261951 4:+49695849 MsG0480020854.01.T01:CDS
TTGACTGAGCAACAAAATTC+TGG 0.265269 4:+49700376 MsG0480020854.01.T01:three_prime_UTR
TTGTTCTCCTCCTCTTATTA+GGG 0.266105 4:+49697094 MsG0480020854.01.T01:CDS
ATAAGCATTTCGTTTGTCTA+TGG 0.266795 4:+49699807 MsG0480020854.01.T01:three_prime_UTR
TATTTCAATGCTCGTTTCTT+TGG 0.281066 4:+49697281 MsG0480020854.01.T01:CDS
AAGAAACTGTTTCTTTATAT+AGG 0.281129 4:+49699570 MsG0480020854.01.T01:three_prime_UTR
AGAAACTGTTTCTTTATATA+GGG 0.296494 4:+49699571 MsG0480020854.01.T01:three_prime_UTR
TTCATGCCCTGCGTCTTCAC+TGG 0.297238 4:+49700128 MsG0480020854.01.T01:three_prime_UTR
TTGGCAGCTCACTGGATATA+AGG 0.301774 4:+49697300 MsG0480020854.01.T01:CDS
CAGCATCATATCTTCGACTT+TGG 0.306552 4:+49698305 MsG0480020854.01.T01:CDS
AGATTTCAAGGACGCAATTA+TGG 0.322855 4:+49698142 MsG0480020854.01.T01:CDS
TCCATCATAGTGTAGCTATT+TGG 0.323153 4:+49700552 MsG0480020854.01.T01:three_prime_UTR
GAAAATAAGCTTTATAGATT+AGG 0.323816 4:+49699493 MsG0480020854.01.T01:three_prime_UTR
TTGGTGAGAATGAGTTGTTC+TGG 0.332655 4:+49697551 MsG0480020854.01.T01:CDS
TTCTTTAATATAAAAGGCTT+TGG 0.332992 4:-49697727 None:intergenic
TGCCATTACACTTCCTCTTA+AGG 0.340416 4:-49699342 None:intergenic
GTATTTATGGTTTGTGTTTG+TGG 0.343912 4:+49699645 MsG0480020854.01.T01:three_prime_UTR
TTAAGCCCCTTTGACAATCT+TGG 0.349079 4:+49697532 MsG0480020854.01.T01:CDS
GCTACCTACGTGGGACAAAA+TGG 0.353384 4:-49696513 None:intergenic
TAAAGGAATGCAAACATAGA+TGG 0.356225 4:-49699936 None:intergenic
AGCATCATATCTTCGACTTT+GGG 0.372911 4:+49698306 MsG0480020854.01.T01:CDS
GAAAGTCCTGCTACTAGCTT+GGG 0.380018 4:+49698457 MsG0480020854.01.T01:CDS
GTTAAGGTGGCAAAGGAAAA+AGG 0.383113 4:-49700198 None:intergenic
CTTGACAAGGTAAAATTTCT+GGG 0.383519 4:-49699742 None:intergenic
ATTGATAAATTTGTCTCCCT+TGG 0.386275 4:+49700232 MsG0480020854.01.T01:three_prime_UTR
ACCATACTTGGAGTGGCCTT+TGG 0.387768 4:-49697576 None:intergenic
GAAATTGTGAAGAGAGAAAC+AGG 0.388408 4:-49699243 None:intergenic
CAGCTGGGATCCACACCAAA+TGG 0.388952 4:-49697158 None:intergenic
TATCATGCAATGCTAGATAA+AGG 0.392651 4:+49698627 MsG0480020854.01.T01:three_prime_UTR
TGTAAATCATTATATGATAA+AGG 0.396986 4:-49697504 None:intergenic
GATAGATTTGAGGTATTGTA+TGG 0.401827 4:-49699191 None:intergenic
GTTGAGATTGAAGTACGAAA+TGG 0.408908 4:+49699519 MsG0480020854.01.T01:three_prime_UTR
ATTTACCTATGTTCTGCTCT+TGG 0.409637 4:+49695791 None:intergenic
ACCCTTCCACCGAATACATT+TGG 0.413259 4:+49699281 MsG0480020854.01.T01:three_prime_UTR
AAGAGTGGATACATGATAAC+AGG 0.416349 4:-49699883 None:intergenic
CCCTTCTCATTGTTGTCAAG+TGG 0.418217 4:+49697461 MsG0480020854.01.T01:CDS
ATATAATTTATAGCTGTAGT+TGG 0.424095 4:+49698594 MsG0480020854.01.T01:three_prime_UTR
CAAGTGGTGTACTGGCTCTC+AGG 0.427335 4:+49697477 MsG0480020854.01.T01:CDS
TATAATTTATAGCTGTAGTT+GGG 0.431082 4:+49698595 MsG0480020854.01.T01:three_prime_UTR
ATTGTTGTCAAGTGGTGTAC+TGG 0.431280 4:+49697469 MsG0480020854.01.T01:CDS
AATCTACAATGAATTCTTCT+CGG 0.431483 4:+49695936 MsG0480020854.01.T01:CDS
TGAACGACTTCCACGCCAGC+TGG 0.432096 4:-49697174 None:intergenic
GGCAGTTAACTCAGGTGGTT+GGG 0.432483 4:+49696456 MsG0480020854.01.T01:intron
TAAGCATTTCGTTTGTCTAT+GGG 0.435010 4:+49699808 MsG0480020854.01.T01:three_prime_UTR
GTGGCCTATAACCTTTGATA+TGG 0.435672 4:+49698485 MsG0480020854.01.T01:three_prime_UTR
TCATGCCCTGCGTCTTCACT+GGG 0.437229 4:+49700129 MsG0480020854.01.T01:three_prime_UTR
AAGTACGAAATGGGTATCAT+TGG 0.437445 4:+49699529 MsG0480020854.01.T01:three_prime_UTR
TGGTGAGAATGAGTTGTTCT+GGG 0.439666 4:+49697552 MsG0480020854.01.T01:CDS
AGCGGATCTTGAGGTTGAAC+CGG 0.441981 4:+49698183 MsG0480020854.01.T01:CDS
ATGATATTATAGAGATTTCA+AGG 0.443554 4:+49698130 MsG0480020854.01.T01:intron
CAATCTTATCATTCGGTTAG+TGG 0.444110 4:+49700039 MsG0480020854.01.T01:three_prime_UTR
CTCAGGTGGTTGGGATGGGT+AGG 0.445822 4:+49696465 MsG0480020854.01.T01:intron
TTGAGATTGAAGTACGAAAT+GGG 0.449681 4:+49699520 MsG0480020854.01.T01:three_prime_UTR
AACACCATATCAAAGGTTAT+AGG 0.450528 4:-49698489 None:intergenic
AATCTTATCATTCGGTTAGT+GGG 0.451403 4:+49700040 MsG0480020854.01.T01:three_prime_UTR
ATATCAAGCTGCACAACATC+AGG 0.452449 4:-49700353 None:intergenic
TGATGTTGCCTGGCAGAATC+CGG 0.452630 4:-49698202 None:intergenic
TGGCTCTAATTGCAGTTCCA+TGG 0.455979 4:+49697695 MsG0480020854.01.T01:CDS
AGAGAAATATGATAGATTTG+AGG 0.464507 4:-49699201 None:intergenic
GTTAACTCAGGTGGTTGGGA+TGG 0.465239 4:+49696460 MsG0480020854.01.T01:intron
AAATGCTTATATTCATAAAG+TGG 0.470412 4:-49699794 None:intergenic
GACGTCCATAGCCACCAAAT+TGG 0.470480 4:-49700324 None:intergenic
GATACCCAAATAGACTGTTA+AGG 0.471115 4:-49697435 None:intergenic
TAGATTAGTGTAGCTTCTGA+TGG 0.471693 4:+49699717 MsG0480020854.01.T01:three_prime_UTR
ACTCAATGGAGTGAATCATT+TGG 0.472059 4:-49698258 None:intergenic
TTCTCACCAAGATTGTCAAA+GGG 0.473262 4:-49697538 None:intergenic
TACAGAGAACCATACCCATT+TGG 0.473631 4:+49697143 MsG0480020854.01.T01:CDS
TTTGAAGATACTCTTGTGGT+TGG 0.476959 4:+49699415 MsG0480020854.01.T01:three_prime_UTR
ATTCGGTGGAAGGGTGTGTT+TGG 0.477352 4:-49699273 None:intergenic
ATTAAAGAAACTTCATAATG+AGG 0.480131 4:+49697741 MsG0480020854.01.T01:CDS
ATTAGGGATGCACATACTAC+TGG 0.480874 4:+49697110 MsG0480020854.01.T01:CDS
GGTATGACAATCTTATCATT+CGG 0.482846 4:+49700032 MsG0480020854.01.T01:three_prime_UTR
ACACACAAGATAGTGTAAAC+AGG 0.483206 4:-49698534 None:intergenic
GGCTTTGGAAAGAGCATCCA+TGG 0.483435 4:-49697712 None:intergenic
AGAAAGTCCTGCTACTAGCT+TGG 0.483862 4:+49698456 MsG0480020854.01.T01:CDS
TACTATGGGATGCACATTGA+AGG 0.491115 4:-49698565 None:intergenic
AAACAGAAAACGATAATTTG+TGG 0.493419 4:+49700298 MsG0480020854.01.T01:three_prime_UTR
ATCTTGAGAGAGTTTAGAAA+GGG 0.494160 4:-49697203 None:intergenic
AATAAATTCTACCACGGTGA+TGG 0.495855 4:+49700163 MsG0480020854.01.T01:three_prime_UTR
TTATATACATGTCAGTGTAA+AGG 0.498729 4:-49699081 None:intergenic
TTGGTACAAACAATGTAGCT+TGG 0.501283 4:+49700571 MsG0480020854.01.T01:three_prime_UTR
AAATTCCTCATGATGTTGCC+TGG 0.502941 4:-49698212 None:intergenic
ACCAAATAGCTACACTATGA+TGG 0.506451 4:-49700553 None:intergenic
AACAGAAAACGATAATTTGT+GGG 0.507424 4:+49700299 MsG0480020854.01.T01:three_prime_UTR
GGGAACCAATTTGGTGGCTA+TGG 0.509683 4:+49700319 MsG0480020854.01.T01:three_prime_UTR
AATGCTTATATTCATAAAGT+GGG 0.509727 4:-49699793 None:intergenic
CATCTTGAGAGAGTTTAGAA+AGG 0.509747 4:-49697204 None:intergenic
TCGTTTCTTTGGCAGCTCAC+TGG 0.510044 4:+49697292 MsG0480020854.01.T01:CDS
GACGCACCAAATATGTGAAA+AGG 0.511111 4:-49695961 None:intergenic
CATTTGGTGTGGATCCCAGC+TGG 0.512737 4:+49697159 MsG0480020854.01.T01:CDS
TTTGTCCCACGTAGGTAGCT+CGG 0.513539 4:+49696517 MsG0480020854.01.T01:CDS
GTATGTGCATCCCTAATAAG+AGG 0.514141 4:-49697104 None:intergenic
AGGTTGAACCGGATTCTGCC+AGG 0.519264 4:+49698194 MsG0480020854.01.T01:CDS
TTCTTTATATAGGGATTAGT+CGG 0.522065 4:+49699580 MsG0480020854.01.T01:three_prime_UTR
TTATGGAGATGTTATTTGGT+GGG 0.523066 4:+49695866 MsG0480020854.01.T01:CDS
ATGTACCACACCAAATAGAA+TGG 0.523321 4:-49697234 None:intergenic
ATTTGCCAAGAGCAGAACAT+AGG 0.527083 4:-49695796 None:intergenic
GGGCAGTTAACTCAGGTGGT+TGG 0.530054 4:+49696455 MsG0480020854.01.T01:intron
GACCAAATGTATTCGGTGGA+AGG 0.537904 4:-49699283 None:intergenic
CCATAAAGCTTCCTAGTCGC+TGG 0.538366 4:-49695849 None:intergenic
ATTCTCACCAAGATTGTCAA+AGG 0.538979 4:-49697539 None:intergenic
AGCTGGGATCCACACCAAAT+GGG 0.540431 4:-49697157 None:intergenic
TGGTGTGGTACATATGAACT+TGG 0.541184 4:+49697244 MsG0480020854.01.T01:CDS
ACTATGGGATGCACATTGAA+GGG 0.545028 4:-49698564 None:intergenic
AAAGGAATGCAAACATAGAT+GGG 0.546005 4:-49699935 None:intergenic
AGAACCAAGAACAAACTCAA+TGG 0.546926 4:-49698272 None:intergenic
ATTTGTGGGAACCAATTTGG+TGG 0.550216 4:+49700313 MsG0480020854.01.T01:three_prime_UTR
TTAACTCAGGTGGTTGGGAT+GGG 0.552187 4:+49696461 MsG0480020854.01.T01:intron
ATGTCACACCAGCATAGCCA+TGG 0.554048 4:-49700408 None:intergenic
ATGTAACAAAATATTTCATG+TGG 0.554063 4:+49698750 MsG0480020854.01.T01:three_prime_UTR
AGATTAGTGTAGCTTCTGAT+GGG 0.560969 4:+49699718 MsG0480020854.01.T01:three_prime_UTR
GGATCCACACCAAATGGGTA+TGG 0.561377 4:-49697152 None:intergenic
GACACCTGCATGAACTATCT+CGG 0.562857 4:-49695996 None:intergenic
ATGAGTTGTTCTGGGGCCAA+AGG 0.565727 4:+49697560 MsG0480020854.01.T01:CDS
CCACTTGACAACAATGAGAA+GGG 0.565912 4:-49697461 None:intergenic
AAGCATTTCGTTTGTCTATG+GGG 0.566631 4:+49699809 MsG0480020854.01.T01:three_prime_UTR
TACCTCTGAAGCGGATCTTG+AGG 0.567052 4:+49698174 MsG0480020854.01.T01:CDS
ACCAAATGTATTCGGTGGAA+GGG 0.573231 4:-49699282 None:intergenic
TTTATGGAGATGTTATTTGG+TGG 0.575690 4:+49695865 MsG0480020854.01.T01:CDS
TATGATTTCTGCCAGCGACT+AGG 0.579385 4:+49695838 MsG0480020854.01.T01:CDS
TCCCACGTAGGTAGCTCGGT+TGG 0.579581 4:+49696521 MsG0480020854.01.T01:CDS
TTGAAAGTCAAACATATGAG+TGG 0.580724 4:-49698991 None:intergenic
GAACGACTTCCACGCCAGCT+GGG 0.584129 4:-49697173 None:intergenic
ATCCTCGGTTAAGGTGGCAA+AGG 0.586241 4:-49700205 None:intergenic
TTCTGCCAGGCAACATCATG+AGG 0.588694 4:+49698207 MsG0480020854.01.T01:CDS
ATCTTATCATTCGGTTAGTG+GGG 0.588871 4:+49700041 MsG0480020854.01.T01:three_prime_UTR
AAGAAAATACATTAACATTG+AGG 0.589175 4:-49699462 None:intergenic
CAGATGACATCCACGACAGT+TGG 0.589699 4:-49700436 None:intergenic
GACCTTAAGAGGAAGTGTAA+TGG 0.592591 4:+49699340 MsG0480020854.01.T01:three_prime_UTR
ACCACTTGACAACAATGAGA+AGG 0.593169 4:-49697462 None:intergenic
TTATGGACAAATATATGCAA+AGG 0.593509 4:+49700256 MsG0480020854.01.T01:three_prime_UTR
GTTATTTGAAGATACTCTTG+TGG 0.593738 4:+49699411 MsG0480020854.01.T01:three_prime_UTR
TTCCTTTGCCACCTTAACCG+AGG 0.599921 4:+49700203 MsG0480020854.01.T01:three_prime_UTR
ATGCAATGCTAGATAAAGGA+TGG 0.604375 4:+49698631 MsG0480020854.01.T01:three_prime_UTR
AACCTCAAGATCCGCTTCAG+AGG 0.611912 4:-49698176 None:intergenic
CTATGGGATGCACATTGAAG+GGG 0.619638 4:-49698563 None:intergenic
TTTCAAAATAAATTCTACCA+CGG 0.624068 4:+49700157 MsG0480020854.01.T01:three_prime_UTR
TTCAACCCAGTGAAGACGCA+GGG 0.627548 4:-49700134 None:intergenic
AAAAGACCAAATGTATTCGG+TGG 0.628159 4:-49699287 None:intergenic
ATTCAACCCAGTGAAGACGC+AGG 0.632811 4:-49700135 None:intergenic
AAGACACCTCAATAAAAGAG+TGG 0.634559 4:-49699898 None:intergenic
TATATTTGTCCATAAACCAA+GGG 0.639674 4:-49700248 None:intergenic
ATATATTTGTCCATAAACCA+AGG 0.640356 4:-49700249 None:intergenic
AAAGTCCTGCTACTAGCTTG+GGG 0.651364 4:+49698458 MsG0480020854.01.T01:CDS
TGTGCTTAATACCTCTGAAG+CGG 0.653524 4:+49698165 MsG0480020854.01.T01:CDS
TGCATAGTTATATCTTGACA+AGG 0.653755 4:-49699755 None:intergenic
ATGCTTATATTCATAAAGTG+GGG 0.654594 4:-49699792 None:intergenic
TGTAACAAAATATTTCATGT+GGG 0.654746 4:+49698751 MsG0480020854.01.T01:three_prime_UTR
AATGCCGAGATAGTTCATGC+AGG 0.655608 4:+49695992 MsG0480020854.01.T01:CDS
TGTCACACCAGCATAGCCAT+GGG 0.658695 4:-49700407 None:intergenic
TCTCACCAAGATTGTCAAAG+GGG 0.658739 4:-49697537 None:intergenic
GATGTCCATTCTATTTGGTG+TGG 0.659577 4:+49697229 MsG0480020854.01.T01:CDS
GGTGTGGATCCCAGCTGGCG+TGG 0.661930 4:+49697164 MsG0480020854.01.T01:CDS
GGTGTGGTACATATGAACTT+GGG 0.664543 4:+49697245 MsG0480020854.01.T01:CDS
GGTGAGAATGAGTTGTTCTG+GGG 0.669382 4:+49697553 MsG0480020854.01.T01:CDS
CACCAACCGAGCTACCTACG+TGG 0.670376 4:-49696523 None:intergenic
TATGGGATGCACATTGAAGG+GGG 0.670553 4:-49698562 None:intergenic
GACATTTCGACCAACTGTCG+TGG 0.671947 4:+49700426 MsG0480020854.01.T01:three_prime_UTR
TGAGGAATTTAATTTCAGTG+AGG 0.676594 4:+49698225 MsG0480020854.01.T01:CDS
AGAACCATACCCATTTGGTG+TGG 0.678548 4:+49697148 MsG0480020854.01.T01:CDS
TGTGCATCCCTAATAAGAGG+AGG 0.678738 4:-49697101 None:intergenic
AAGTCCTGCTACTAGCTTGG+GGG 0.696904 4:+49698459 MsG0480020854.01.T01:CDS
ACCAACCGAGCTACCTACGT+GGG 0.698395 4:-49696522 None:intergenic
CTGTTAAGGAAAATCATCTG+CGG 0.714419 4:-49697421 None:intergenic
TGAACTTGTATCCATCACCG+TGG 0.788313 4:-49700174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCAAGAATTTATAAAAT+AGG - Chr4:49698377-49698396 None:intergenic 10.0%
!!! AAATTATATTTTGTATACTA+TGG - Chr4:49698583-49698602 None:intergenic 10.0%
!!! AATTATATTTTGTATACTAT+GGG - Chr4:49698582-49698601 None:intergenic 10.0%
!!! ACAATTATTTTAATCAATTT+GGG + Chr4:49699694-49699713 MsG0480020854.01.T01:three_prime_UTR 10.0%
!!! TATTTTATAAATTCTTGATT+TGG + Chr4:49698376-49698395 MsG0480020854.01.T01:intron 10.0%
!! AAATTAAATACAACTTCAAT+TGG + Chr4:49697988-49698007 MsG0480020854.01.T01:intron 15.0%
!! AATGATTAAAGATGAAAAAA+TGG - Chr4:49699984-49700003 None:intergenic 15.0%
!! ATATTTAACACCAATAATTT+AGG - Chr4:49696264-49696283 None:intergenic 15.0%
!! ATGTCAACTATATATATAAA+AGG - Chr4:49696289-49696308 None:intergenic 15.0%
!! TACATGTAATTAAAAAGTTT+CGG - Chr4:49697826-49697845 None:intergenic 15.0%
!! TGAAGTTTCTTTAATATAAA+AGG - Chr4:49697736-49697755 None:intergenic 15.0%
!! TGTAAATCATTATATGATAA+AGG - Chr4:49697507-49697526 None:intergenic 15.0%
!!! AATTAAATCCTTTTTTAGAT+AGG + Chr4:49699103-49699122 MsG0480020854.01.T01:three_prime_UTR 15.0%
!!! AGAAATCATATAGAATTTTT+AGG - Chr4:49695828-49695847 None:intergenic 15.0%
!!! ATTAAATCCTTTTTTAGATA+GGG + Chr4:49699104-49699123 MsG0480020854.01.T01:three_prime_UTR 15.0%
!!! GAAATCATATAGAATTTTTA+GGG - Chr4:49695827-49695846 None:intergenic 15.0%
!!! GACAATTATTTTAATCAATT+TGG + Chr4:49699693-49699712 MsG0480020854.01.T01:three_prime_UTR 15.0%
!!! TTCTTTACAGTTTATAATTT+TGG + Chr4:49696210-49696229 MsG0480020854.01.T01:intron 15.0%
!! AAAAAACATAGATAAGGTAA+AGG - Chr4:49699956-49699975 None:intergenic 20.0%
!! AAAGAAAACTGATCTTAAAA+TGG - Chr4:49697947-49697966 None:intergenic 20.0%
!! AAGAAAATACATTAACATTG+AGG - Chr4:49699465-49699484 None:intergenic 20.0%
!! AGAAACAAAAATAATTAGCT+TGG - Chr4:49698014-49698033 None:intergenic 20.0%
!! ATATAATTTATAGCTGTAGT+TGG + Chr4:49698594-49698613 MsG0480020854.01.T01:three_prime_UTR 20.0%
!! ATGATATTATAGAGATTTCA+AGG + Chr4:49698130-49698149 MsG0480020854.01.T01:intron 20.0%
!! ATGTAACAAAATATTTCATG+TGG + Chr4:49698750-49698769 MsG0480020854.01.T01:three_prime_UTR 20.0%
!! ATTAAAGAAACTTCATAATG+AGG + Chr4:49697741-49697760 MsG0480020854.01.T01:CDS 20.0%
!! ATTTATAAAATAGGAAACTG+AGG - Chr4:49698368-49698387 None:intergenic 20.0%
!! GTATTGAAAAAACATAGATA+AGG - Chr4:49699962-49699981 None:intergenic 20.0%
!! TATAATTTATAGCTGTAGTT+GGG + Chr4:49698595-49698614 MsG0480020854.01.T01:three_prime_UTR 20.0%
!! TGATCTTAAAATGGATATTA+GGG - Chr4:49697938-49697957 None:intergenic 20.0%
!! TGGAATAAAAAAAAATCAAC+TGG - Chr4:49696238-49696257 None:intergenic 20.0%
!! TGTAACAAAATATTTCATGT+GGG + Chr4:49698751-49698770 MsG0480020854.01.T01:three_prime_UTR 20.0%
!! TTCTTTAATATAAAAGGCTT+TGG - Chr4:49697730-49697749 None:intergenic 20.0%
!! TTTCAAAATAAATTCTACCA+CGG + Chr4:49700157-49700176 MsG0480020854.01.T01:three_prime_UTR 20.0%
!!! AAGAAACTGTTTCTTTATAT+AGG + Chr4:49699570-49699589 MsG0480020854.01.T01:three_prime_UTR 20.0%
!!! AATTTATCAATTTTCATCCT+CGG - Chr4:49700223-49700242 None:intergenic 20.0%
!!! AGAAACTGTTTCTTTATATA+GGG + Chr4:49699571-49699590 MsG0480020854.01.T01:three_prime_UTR 20.0%
!!! ATTTCAGTAAATTTTAAGTC+TGG - Chr4:49696689-49696708 None:intergenic 20.0%
!!! ATTTTAAGATCAGTTTTCTT+TGG + Chr4:49697946-49697965 MsG0480020854.01.T01:intron 20.0%
!!! GAAAATAAGCTTTATAGATT+AGG + Chr4:49699493-49699512 MsG0480020854.01.T01:three_prime_UTR 20.0%
!!! TTAAATCCTTTTTTAGATAG+GGG + Chr4:49699105-49699124 MsG0480020854.01.T01:three_prime_UTR 20.0%
! AAACAGAAAACGATAATTTG+TGG + Chr4:49700298-49700317 MsG0480020854.01.T01:three_prime_UTR 25.0%
! AACGATAAAATGAAAACACA+AGG - Chr4:49697782-49697801 None:intergenic 25.0%
! AATAATCCTCATAAAATCTG+TGG - Chr4:49698096-49698115 None:intergenic 25.0%
! AATCTACAATGAATTCTTCT+CGG + Chr4:49695936-49695955 MsG0480020854.01.T01:CDS 25.0%
! AATTAACCCCTATCTAAAAA+AGG - Chr4:49699114-49699133 None:intergenic 25.0%
! AATTTGAATCGTTAACTCAT+TGG - Chr4:49696414-49696433 None:intergenic 25.0%
! ACCTTCAAATCAATGTAAAT+AGG + Chr4:49696903-49696922 MsG0480020854.01.T01:intron 25.0%
! ACGATAAAATGAAAACACAA+GGG - Chr4:49697781-49697800 None:intergenic 25.0%
! AGAGAAATATGATAGATTTG+AGG - Chr4:49699204-49699223 None:intergenic 25.0%
! AGTTGTTATGTTAATTTCCA+AGG - Chr4:49696597-49696616 None:intergenic 25.0%
! ATATAACAGTCATAACATAC+AGG - Chr4:49696827-49696846 None:intergenic 25.0%
! ATATATTTGTCCATAAACCA+AGG - Chr4:49700252-49700271 None:intergenic 25.0%
! ATGAAAACATCAACAAGTAA+TGG - Chr4:49696070-49696089 None:intergenic 25.0%
! ATGAAGAAAAAAACCATACT+TGG - Chr4:49697591-49697610 None:intergenic 25.0%
! ATTTACTGTAATATGCCATA+CGG + Chr4:49696434-49696453 MsG0480020854.01.T01:intron 25.0%
! CATTATGTAAACATGCTTAT+CGG + Chr4:49697856-49697875 MsG0480020854.01.T01:intron 25.0%
! CTGATCTTAAAATGGATATT+AGG - Chr4:49697939-49697958 None:intergenic 25.0%
! GAAATCTCTATAATATCATC+AGG - Chr4:49698129-49698148 None:intergenic 25.0%
! TATATTTGTCCATAAACCAA+GGG - Chr4:49700251-49700270 None:intergenic 25.0%
! TCAAAAAGTTCTTCTCATTA+TGG - Chr4:49696760-49696779 None:intergenic 25.0%
! TTAGTCTCGTAAAAAATATC+TGG - Chr4:49698921-49698940 None:intergenic 25.0%
! TTATATACATGTCAGTGTAA+AGG - Chr4:49699084-49699103 None:intergenic 25.0%
! TTATGGACAAATATATGCAA+AGG + Chr4:49700256-49700275 MsG0480020854.01.T01:three_prime_UTR 25.0%
! TTGAACAGACATTGTATTTA+TGG + Chr4:49699632-49699651 MsG0480020854.01.T01:three_prime_UTR 25.0%
! TTTGAAAAACACCATATCAA+AGG - Chr4:49698499-49698518 None:intergenic 25.0%
!! AACAGAAAACGATAATTTGT+GGG + Chr4:49700299-49700318 MsG0480020854.01.T01:three_prime_UTR 25.0%
!! ATTTTCCTTAACAGTCTATT+TGG + Chr4:49697430-49697449 MsG0480020854.01.T01:CDS 25.0%
!! CACTATTTTCAATGTATTGT+GGG + Chr4:49695911-49695930 MsG0480020854.01.T01:CDS 25.0%
!! TCACTATTTTCAATGTATTG+TGG + Chr4:49695910-49695929 MsG0480020854.01.T01:CDS 25.0%
!! TGCTTTTATACTACTTATGA+TGG + Chr4:49700087-49700106 MsG0480020854.01.T01:three_prime_UTR 25.0%
!! TTCATTTTATCACTTAGAGT+AGG + Chr4:49700484-49700503 MsG0480020854.01.T01:three_prime_UTR 25.0%
!! TTCTTTATATAGGGATTAGT+CGG + Chr4:49699580-49699599 MsG0480020854.01.T01:three_prime_UTR 25.0%
!! TTTTCCTTAACAGTCTATTT+GGG + Chr4:49697431-49697450 MsG0480020854.01.T01:CDS 25.0%
!!! AATTGAAGCACTGTTTATTT+AGG + Chr4:49696853-49696872 MsG0480020854.01.T01:intron 25.0%
!!! AGTATGGTTTTTTTCTTCAT+TGG + Chr4:49697591-49697610 MsG0480020854.01.T01:intron 25.0%
!!! ATTAAATGTTTTTTGTAGCC+AGG + Chr4:49697044-49697063 MsG0480020854.01.T01:intron 25.0%
!!! TCCTATTTACATTGATTTGA+AGG - Chr4:49696907-49696926 None:intergenic 25.0%
!!! TGAATGGAAGAATTAGTTTT+TGG - Chr4:49696641-49696660 None:intergenic 25.0%
!!! TTGCTGATTGCAATTTTAAT+AGG + Chr4:49700011-49700030 MsG0480020854.01.T01:three_prime_UTR 25.0%
AAAGGAATGCAAACATAGAT+GGG - Chr4:49699938-49699957 None:intergenic 30.0%
AACACCATATCAAAGGTTAT+AGG - Chr4:49698492-49698511 None:intergenic 30.0%
AATCTTATCATTCGGTTAGT+GGG + Chr4:49700040-49700059 MsG0480020854.01.T01:three_prime_UTR 30.0%
ATAAGCATTTCGTTTGTCTA+TGG + Chr4:49699807-49699826 MsG0480020854.01.T01:three_prime_UTR 30.0%
ATCTTGAGAGAGTTTAGAAA+GGG - Chr4:49697206-49697225 None:intergenic 30.0%
ATGAAGATGTCCATTCTATT+TGG + Chr4:49697224-49697243 MsG0480020854.01.T01:CDS 30.0%
ATTGATAAATTTGTCTCCCT+TGG + Chr4:49700232-49700251 MsG0480020854.01.T01:three_prime_UTR 30.0%
CACTATTGTCAATAGATTTC+TGG + Chr4:49699668-49699687 MsG0480020854.01.T01:three_prime_UTR 30.0%
CTAGCAAAATTATAGCTACA+GGG - Chr4:49697347-49697366 None:intergenic 30.0%
CTTGACAAGGTAAAATTTCT+GGG - Chr4:49699745-49699764 None:intergenic 30.0%
GCAAAAAGACCAAATGTATT+CGG - Chr4:49699293-49699312 None:intergenic 30.0%
GGTATGACAATCTTATCATT+CGG + Chr4:49700032-49700051 MsG0480020854.01.T01:three_prime_UTR 30.0%
GTTATTTGAAGATACTCTTG+TGG + Chr4:49699411-49699430 MsG0480020854.01.T01:three_prime_UTR 30.0%
TAAAGGAATGCAAACATAGA+TGG - Chr4:49699939-49699958 None:intergenic 30.0%
TAAGCATTTCGTTTGTCTAT+GGG + Chr4:49699808-49699827 MsG0480020854.01.T01:three_prime_UTR 30.0%
TAGCAAAATTATAGCTACAG+GGG - Chr4:49697346-49697365 None:intergenic 30.0%
TATCATGCAATGCTAGATAA+AGG + Chr4:49698627-49698646 MsG0480020854.01.T01:three_prime_UTR 30.0%
TATTCCATCGCCTAAATTAT+TGG + Chr4:49696251-49696270 MsG0480020854.01.T01:intron 30.0%
TATTTCAATGCTCGTTTCTT+TGG + Chr4:49697281-49697300 MsG0480020854.01.T01:CDS 30.0%
TCGACAATATCAGATGTATT+TGG + Chr4:49696781-49696800 MsG0480020854.01.T01:intron 30.0%
TCTTGACAAGGTAAAATTTC+TGG - Chr4:49699746-49699765 None:intergenic 30.0%
TGCATAGTTATATCTTGACA+AGG - Chr4:49699758-49699777 None:intergenic 30.0%
TTGAAAGTCAAACATATGAG+TGG - Chr4:49698994-49699013 None:intergenic 30.0%
TTGAGATTGAAGTACGAAAT+GGG + Chr4:49699520-49699539 MsG0480020854.01.T01:three_prime_UTR 30.0%
TTTACTGTAATATGCCATAC+GGG + Chr4:49696435-49696454 MsG0480020854.01.T01:intron 30.0%
! AAGCACTGTTTATTTAGGAT+TGG + Chr4:49696858-49696877 MsG0480020854.01.T01:intron 30.0%
! AGCTTTATGGAGATGTTATT+TGG + Chr4:49695862-49695881 MsG0480020854.01.T01:CDS 30.0%
! ATAATTTGTGGGAACCAATT+TGG + Chr4:49700310-49700329 MsG0480020854.01.T01:three_prime_UTR 30.0%
! ATGTATCCACTCTTTTATTG+AGG + Chr4:49699892-49699911 MsG0480020854.01.T01:three_prime_UTR 30.0%
! CCTCGTTCTTAAAACTATTT+TGG - Chr4:49696561-49696580 None:intergenic 30.0%
! GTATTTATGGTTTGTGTTTG+TGG + Chr4:49699645-49699664 MsG0480020854.01.T01:three_prime_UTR 30.0%
! TGAGGAATTTAATTTCAGTG+AGG + Chr4:49698225-49698244 MsG0480020854.01.T01:CDS 30.0%
! TTATGGAGATGTTATTTGGT+GGG + Chr4:49695866-49695885 MsG0480020854.01.T01:CDS 30.0%
! TTTATGGAGATGTTATTTGG+TGG + Chr4:49695865-49695884 MsG0480020854.01.T01:CDS 30.0%
! TTTTATCATGTGACCTTAAG+AGG + Chr4:49699329-49699348 MsG0480020854.01.T01:three_prime_UTR 30.0%
!! ATGGTGTTTTTCAAACTCTA+TGG + Chr4:49698504-49698523 MsG0480020854.01.T01:three_prime_UTR 30.0%
!! GATAGATTTGAGGTATTGTA+TGG - Chr4:49699194-49699213 None:intergenic 30.0%
!!! CCAAAATAGTTTTAAGAACG+AGG + Chr4:49696558-49696577 MsG0480020854.01.T01:intron 30.0%
!!! GCACTATTTTGAAGTACAAA+AGG - Chr4:49696988-49697007 None:intergenic 30.0%
!!! GGAAGAATTAGTTTTTGGAT+AGG - Chr4:49696636-49696655 None:intergenic 30.0%
!!! GTAAAGGTTTTTTACACTGT+CGG - Chr4:49699068-49699087 None:intergenic 30.0%
AAAAGACCAAATGTATTCGG+TGG - Chr4:49699290-49699309 None:intergenic 35.0%
AACACCAATAATTTAGGCGA+TGG - Chr4:49696258-49696277 None:intergenic 35.0%
AAGACACCTCAATAAAAGAG+TGG - Chr4:49699901-49699920 None:intergenic 35.0%
AAGAGTGGATACATGATAAC+AGG - Chr4:49699886-49699905 None:intergenic 35.0%
AAGCATTTCGTTTGTCTATG+GGG + Chr4:49699809-49699828 MsG0480020854.01.T01:three_prime_UTR 35.0%
AAGTACGAAATGGGTATCAT+TGG + Chr4:49699529-49699548 MsG0480020854.01.T01:three_prime_UTR 35.0%
AATAAATTCTACCACGGTGA+TGG + Chr4:49700163-49700182 MsG0480020854.01.T01:three_prime_UTR 35.0%
AATTACTGCTCATGATATGC+AGG + Chr4:49697657-49697676 MsG0480020854.01.T01:intron 35.0%
AATTTGTCTCCCTTGGTTTA+TGG + Chr4:49700239-49700258 MsG0480020854.01.T01:three_prime_UTR 35.0%
ACACACAAGATAGTGTAAAC+AGG - Chr4:49698537-49698556 None:intergenic 35.0%
ACCAAATAGCTACACTATGA+TGG - Chr4:49700556-49700575 None:intergenic 35.0%
ACTCAATGGAGTGAATCATT+TGG - Chr4:49698261-49698280 None:intergenic 35.0%
AGAACCAAGAACAAACTCAA+TGG - Chr4:49698275-49698294 None:intergenic 35.0%
AGATTAGTGTAGCTTCTGAT+GGG + Chr4:49699718-49699737 MsG0480020854.01.T01:three_prime_UTR 35.0%
AGATTTCAAGGACGCAATTA+TGG + Chr4:49698142-49698161 MsG0480020854.01.T01:CDS 35.0%
AGCAAAATTATAGCTACAGG+GGG - Chr4:49697345-49697364 None:intergenic 35.0%
AGCATCATATCTTCGACTTT+GGG + Chr4:49698306-49698325 MsG0480020854.01.T01:CDS 35.0%
AGTCATCAACATGACATGAA+TGG - Chr4:49696657-49696676 None:intergenic 35.0%
ATCTTATCATTCGGTTAGTG+GGG + Chr4:49700041-49700060 MsG0480020854.01.T01:three_prime_UTR 35.0%
ATGCAATGCTAGATAAAGGA+TGG + Chr4:49698631-49698650 MsG0480020854.01.T01:three_prime_UTR 35.0%
ATGTACCACACCAAATAGAA+TGG - Chr4:49697237-49697256 None:intergenic 35.0%
ATTCTCACCAAGATTGTCAA+AGG - Chr4:49697542-49697561 None:intergenic 35.0%
CAATCTTATCATTCGGTTAG+TGG + Chr4:49700039-49700058 MsG0480020854.01.T01:three_prime_UTR 35.0%
CATCTTGAGAGAGTTTAGAA+AGG - Chr4:49697207-49697226 None:intergenic 35.0%
CTGTTAAGGAAAATCATCTG+CGG - Chr4:49697424-49697443 None:intergenic 35.0%
GAAAAAAACCATACTTGGAG+TGG - Chr4:49697586-49697605 None:intergenic 35.0%
GAAATTGTGAAGAGAGAAAC+AGG - Chr4:49699246-49699265 None:intergenic 35.0%
GATACCCAAATAGACTGTTA+AGG - Chr4:49697438-49697457 None:intergenic 35.0%
GCTAGCAAAATTATAGCTAC+AGG - Chr4:49697348-49697367 None:intergenic 35.0%
GTAAATAGGACTCGTTTGAA+TGG + Chr4:49696917-49696936 MsG0480020854.01.T01:intron 35.0%
GTTGAGATTGAAGTACGAAA+TGG + Chr4:49699519-49699538 MsG0480020854.01.T01:three_prime_UTR 35.0%
TAGATTAGTGTAGCTTCTGA+TGG + Chr4:49699717-49699736 MsG0480020854.01.T01:three_prime_UTR 35.0%
TCCATCATAGTGTAGCTATT+TGG + Chr4:49700552-49700571 MsG0480020854.01.T01:three_prime_UTR 35.0%
TTCTCACCAAGATTGTCAAA+GGG - Chr4:49697541-49697560 None:intergenic 35.0%
TTGACTGAGCAACAAAATTC+TGG + Chr4:49700376-49700395 MsG0480020854.01.T01:three_prime_UTR 35.0%
TTGAGCACTCTTCTAACTTT+GGG + Chr4:49696334-49696353 MsG0480020854.01.T01:intron 35.0%
TTGGTACAAACAATGTAGCT+TGG + Chr4:49700571-49700590 MsG0480020854.01.T01:three_prime_UTR 35.0%
TTGTTCTCCTCCTCTTATTA+GGG + Chr4:49697094-49697113 MsG0480020854.01.T01:CDS 35.0%
TTTGAAGATACTCTTGTGGT+TGG + Chr4:49699415-49699434 MsG0480020854.01.T01:three_prime_UTR 35.0%
! GATGGCTTTTAAACTGTGTT+TGG + Chr4:49698649-49698668 MsG0480020854.01.T01:three_prime_UTR 35.0%
! GGCATTGCTTTGTTAATAAC+TGG - Chr4:49698075-49698094 None:intergenic 35.0%
! TCAACAAAAGCACAGAACAA+AGG - Chr4:49698049-49698068 None:intergenic 35.0%
! TCAATTTTCATCCTCGGTTA+AGG - Chr4:49700217-49700236 None:intergenic 35.0%
! TCGGTTCCTTTTCACATATT+TGG + Chr4:49695955-49695974 MsG0480020854.01.T01:CDS 35.0%
!!! AGTTTTAAGAACGAGGTTCA+GGG + Chr4:49696565-49696584 MsG0480020854.01.T01:intron 35.0%
!!! TAGTTTTAAGAACGAGGTTC+AGG + Chr4:49696564-49696583 MsG0480020854.01.T01:intron 35.0%
AAATTCCTCATGATGTTGCC+TGG - Chr4:49698215-49698234 None:intergenic 40.0%
AAGCAGAAACACAGTCGTAA+AGG - Chr4:49697893-49697912 None:intergenic 40.0%
AATAGGAAACTGAGGCAAGT+AGG - Chr4:49698360-49698379 None:intergenic 40.0%
ACCACTTGACAACAATGAGA+AGG - Chr4:49697465-49697484 None:intergenic 40.0%
ACTATGGGATGCACATTGAA+GGG - Chr4:49698567-49698586 None:intergenic 40.0%
AGCAGAAACACAGTCGTAAA+GGG - Chr4:49697892-49697911 None:intergenic 40.0%
ATAGGAAACTGAGGCAAGTA+GGG - Chr4:49698359-49698378 None:intergenic 40.0%
ATATCAAGCTGCACAACATC+AGG - Chr4:49700356-49700375 None:intergenic 40.0%
ATCTTCGACTTTGGGCATTA+AGG + Chr4:49698314-49698333 MsG0480020854.01.T01:CDS 40.0%
ATTAGGGATGCACATACTAC+TGG + Chr4:49697110-49697129 MsG0480020854.01.T01:CDS 40.0%
ATTGTTGTCAAGTGGTGTAC+TGG + Chr4:49697469-49697488 MsG0480020854.01.T01:CDS 40.0%
ATTTGTGGGAACCAATTTGG+TGG + Chr4:49700313-49700332 MsG0480020854.01.T01:three_prime_UTR 40.0%
CACTCAACTCATAAGTCAGA+AGG - Chr4:49696369-49696388 None:intergenic 40.0%
CAGCATCATATCTTCGACTT+TGG + Chr4:49698305-49698324 MsG0480020854.01.T01:CDS 40.0%
CCACTTGACAACAATGAGAA+GGG - Chr4:49697464-49697483 None:intergenic 40.0%
GACGCACCAAATATGTGAAA+AGG - Chr4:49695964-49695983 None:intergenic 40.0%
GGTGTGGTACATATGAACTT+GGG + Chr4:49697245-49697264 MsG0480020854.01.T01:CDS 40.0%
GTATGTGCATCCCTAATAAG+AGG - Chr4:49697107-49697126 None:intergenic 40.0%
GTGGCCTATAACCTTTGATA+TGG + Chr4:49698485-49698504 MsG0480020854.01.T01:three_prime_UTR 40.0%
GTTAAGGTGGCAAAGGAAAA+AGG - Chr4:49700201-49700220 None:intergenic 40.0%
GTTGAGCACTCTTCTAACTT+TGG + Chr4:49696333-49696352 MsG0480020854.01.T01:intron 40.0%
GTTGTTCTCCTCCTCTTATT+AGG + Chr4:49697093-49697112 MsG0480020854.01.T01:CDS 40.0%
TACAGAGAACCATACCCATT+TGG + Chr4:49697143-49697162 MsG0480020854.01.T01:CDS 40.0%
TACTATGGGATGCACATTGA+AGG - Chr4:49698568-49698587 None:intergenic 40.0%
TATGGTCGACAAGTTAAGAG+TGG - Chr4:49696742-49696761 None:intergenic 40.0%
TCATGCAGCTGTCTTCTATT+TGG + Chr4:49696187-49696206 MsG0480020854.01.T01:intron 40.0%
TCTCACCAAGATTGTCAAAG+GGG - Chr4:49697540-49697559 None:intergenic 40.0%
TGAAAACACAAGGGAGACAA+AGG - Chr4:49697772-49697791 None:intergenic 40.0%
TGCCATTACACTTCCTCTTA+AGG - Chr4:49699345-49699364 None:intergenic 40.0%
TGGTGAGAATGAGTTGTTCT+GGG + Chr4:49697552-49697571 MsG0480020854.01.T01:CDS 40.0%
TGGTGTGGTACATATGAACT+TGG + Chr4:49697244-49697263 MsG0480020854.01.T01:CDS 40.0%
TTAAGCCCCTTTGACAATCT+TGG + Chr4:49697532-49697551 MsG0480020854.01.T01:CDS 40.0%
TTGGTGAGAATGAGTTGTTC+TGG + Chr4:49697551-49697570 MsG0480020854.01.T01:CDS 40.0%
! ACCAAATGTATTCGGTGGAA+GGG - Chr4:49699285-49699304 None:intergenic 40.0%
! ATTTTCATCCTCGGTTAAGG+TGG - Chr4:49700214-49700233 None:intergenic 40.0%
! CACTCCATTGAGTTTGTTCT+TGG + Chr4:49698268-49698287 MsG0480020854.01.T01:CDS 40.0%
! GACCTTAAGAGGAAGTGTAA+TGG + Chr4:49699340-49699359 MsG0480020854.01.T01:three_prime_UTR 40.0%
! GATGTCCATTCTATTTGGTG+TGG + Chr4:49697229-49697248 MsG0480020854.01.T01:CDS 40.0%
! GCAATGCCACAGATTTTATG+AGG + Chr4:49698087-49698106 MsG0480020854.01.T01:intron 40.0%
! TACGACTGTGTTTCTGCTTA+TGG + Chr4:49697894-49697913 MsG0480020854.01.T01:intron 40.0%
! TGTGCTTAATACCTCTGAAG+CGG + Chr4:49698165-49698184 MsG0480020854.01.T01:CDS 40.0%
!! CATTTGGTCTTTTTGCAGAG+AGG + Chr4:49699297-49699316 MsG0480020854.01.T01:three_prime_UTR 40.0%
!! CTTGCTCTTCATGTTGCTTT+AGG + Chr4:49697386-49697405 MsG0480020854.01.T01:intron 40.0%
!! TGTAGCTTGGACTTTTGAGA+AGG + Chr4:49700584-49700603 MsG0480020854.01.T01:three_prime_UTR 40.0%
!!! AATTCTGGCTCATTTTCCCA+TGG + Chr4:49700391-49700410 MsG0480020854.01.T01:three_prime_UTR 40.0%
!!! ACTCTTGTGGTTGGTTTTGT+AGG + Chr4:49699424-49699443 MsG0480020854.01.T01:three_prime_UTR 40.0%
!!! CTCTTGTGGTTGGTTTTGTA+GGG + Chr4:49699425-49699444 MsG0480020854.01.T01:three_prime_UTR 40.0%
!!! GCAGGTTTTGTTATTGCTTC+TGG + Chr4:49697675-49697694 MsG0480020854.01.T01:intron 40.0%
AAACACAAGGGAGACAAAGG+AGG - Chr4:49697769-49697788 None:intergenic 45.0%
AAACAGCGCAAGTTAAAGCC+TGG - Chr4:49697065-49697084 None:intergenic 45.0%
AATGCCGAGATAGTTCATGC+AGG + Chr4:49695992-49696011 MsG0480020854.01.T01:CDS 45.0%
ACCCTTCCACCGAATACATT+TGG + Chr4:49699281-49699300 MsG0480020854.01.T01:three_prime_UTR 45.0%
ACTCGTTTGAATGGCTTCTC+TGG + Chr4:49696926-49696945 MsG0480020854.01.T01:intron 45.0%
AGAAAGTCCTGCTACTAGCT+TGG + Chr4:49698456-49698475 MsG0480020854.01.T01:CDS 45.0%
CCCTTCTCATTGTTGTCAAG+TGG + Chr4:49697461-49697480 MsG0480020854.01.T01:CDS 45.0%
CGACAAGTTAAGAGTGGAAC+TGG - Chr4:49696736-49696755 None:intergenic 45.0%
CTATGGGATGCACATTGAAG+GGG - Chr4:49698566-49698585 None:intergenic 45.0%
GACACCTGCATGAACTATCT+CGG - Chr4:49695999-49696018 None:intergenic 45.0%
GACAGCTGCATGAACTATCT+CGG - Chr4:49696180-49696199 None:intergenic 45.0%
GAGGCAAGTAGGGAAAATCA+CGG - Chr4:49698349-49698368 None:intergenic 45.0%
GCAGAAACACAGTCGTAAAG+GGG - Chr4:49697891-49697910 None:intergenic 45.0%
GGTGAGAATGAGTTGTTCTG+GGG + Chr4:49697553-49697572 MsG0480020854.01.T01:CDS 45.0%
TATGATTTCTGCCAGCGACT+AGG + Chr4:49695838-49695857 MsG0480020854.01.T01:CDS 45.0%
TATGGGATGCACATTGAAGG+GGG - Chr4:49698565-49698584 None:intergenic 45.0%
TGAACTTGTATCCATCACCG+TGG - Chr4:49700177-49700196 None:intergenic 45.0%
TGTGCATCCCTAATAAGAGG+AGG - Chr4:49697104-49697123 None:intergenic 45.0%
TTAACTCAGGTGGTTGGGAT+GGG + Chr4:49696461-49696480 MsG0480020854.01.T01:intron 45.0%
TTGGCAGCTCACTGGATATA+AGG + Chr4:49697300-49697319 MsG0480020854.01.T01:CDS 45.0%
! AAAGTCCTGCTACTAGCTTG+GGG + Chr4:49698458-49698477 MsG0480020854.01.T01:CDS 45.0%
! AGAACCATACCCATTTGGTG+TGG + Chr4:49697148-49697167 MsG0480020854.01.T01:CDS 45.0%
! GAAAGTCCTGCTACTAGCTT+GGG + Chr4:49698457-49698476 MsG0480020854.01.T01:CDS 45.0%
! GACCAAATGTATTCGGTGGA+AGG - Chr4:49699286-49699305 None:intergenic 45.0%
! TCAACCATTTTGTCCCACGT+AGG + Chr4:49696509-49696528 MsG0480020854.01.T01:CDS 45.0%
! TCATTTTCCCATGGCTATGC+TGG + Chr4:49700400-49700419 MsG0480020854.01.T01:three_prime_UTR 45.0%
!! GCTTGGACTTTTGAGAAGGT+AGG + Chr4:49700588-49700607 MsG0480020854.01.T01:three_prime_UTR 45.0%
!! TGGCTCTAATTGCAGTTCCA+TGG + Chr4:49697695-49697714 MsG0480020854.01.T01:CDS 45.0%
AACCTCAAGATCCGCTTCAG+AGG - Chr4:49698179-49698198 None:intergenic 50.0%
ACCATACTTGGAGTGGCCTT+TGG - Chr4:49697579-49697598 None:intergenic 50.0%
ACCTGAGTTAACTGCCCGTA+TGG - Chr4:49696452-49696471 None:intergenic 50.0%
AGCGGATCTTGAGGTTGAAC+CGG + Chr4:49698183-49698202 MsG0480020854.01.T01:CDS 50.0%
AGCTGGGATCCACACCAAAT+GGG - Chr4:49697160-49697179 None:intergenic 50.0%
ATACGGGCAGTTAACTCAGG+TGG + Chr4:49696451-49696470 MsG0480020854.01.T01:intron 50.0%
ATCCTCGGTTAAGGTGGCAA+AGG - Chr4:49700208-49700227 None:intergenic 50.0%
ATGTCACACCAGCATAGCCA+TGG - Chr4:49700411-49700430 None:intergenic 50.0%
ATTCAACCCAGTGAAGACGC+AGG - Chr4:49700138-49700157 None:intergenic 50.0%
CAAGTAGGGAAAATCACGGC+TGG - Chr4:49698345-49698364 None:intergenic 50.0%
CAGATGACATCCACGACAGT+TGG - Chr4:49700439-49700458 None:intergenic 50.0%
CCAGCGACTAGGAAGCTTTA+TGG + Chr4:49695849-49695868 MsG0480020854.01.T01:CDS 50.0%
CCATAAAGCTTCCTAGTCGC+TGG - Chr4:49695852-49695871 None:intergenic 50.0%
CTGGCATAGTTGCACTCTTC+TGG + Chr4:49696945-49696964 MsG0480020854.01.T01:intron 50.0%
GAATGAGCCAAGCTGCAAAG+TGG - Chr4:49698413-49698432 None:intergenic 50.0%
GACATTTCGACCAACTGTCG+TGG + Chr4:49700426-49700445 MsG0480020854.01.T01:three_prime_UTR 50.0%
GACGTCCATAGCCACCAAAT+TGG - Chr4:49700327-49700346 None:intergenic 50.0%
GAGGTTCAGGGTTCAAACCT+TGG + Chr4:49696577-49696596 MsG0480020854.01.T01:intron 50.0%
GCTACCTACGTGGGACAAAA+TGG - Chr4:49696516-49696535 None:intergenic 50.0%
GGATCCACACCAAATGGGTA+TGG - Chr4:49697155-49697174 None:intergenic 50.0%
GGCAGTTAACTCAGGTGGTT+GGG + Chr4:49696456-49696475 MsG0480020854.01.T01:intron 50.0%
GTTAACTCAGGTGGTTGGGA+TGG + Chr4:49696460-49696479 MsG0480020854.01.T01:intron 50.0%
TCGTTTCTTTGGCAGCTCAC+TGG + Chr4:49697292-49697311 MsG0480020854.01.T01:CDS 50.0%
TCTGTGACCACTTTGCAGCT+TGG + Chr4:49698403-49698422 MsG0480020854.01.T01:intron 50.0%
TGATGTTGCCTGGCAGAATC+CGG - Chr4:49698205-49698224 None:intergenic 50.0%
TGTCACACCAGCATAGCCAT+GGG - Chr4:49700410-49700429 None:intergenic 50.0%
TTCAACCCAGTGAAGACGCA+GGG - Chr4:49700137-49700156 None:intergenic 50.0%
TTCCTTTGCCACCTTAACCG+AGG + Chr4:49700203-49700222 MsG0480020854.01.T01:three_prime_UTR 50.0%
TTCTGCCAGGCAACATCATG+AGG + Chr4:49698207-49698226 MsG0480020854.01.T01:CDS 50.0%
TTTGTCCCACGTAGGTAGCT+CGG + Chr4:49696517-49696536 MsG0480020854.01.T01:CDS 50.0%
! AAGTCCTGCTACTAGCTTGG+GGG + Chr4:49698459-49698478 MsG0480020854.01.T01:CDS 50.0%
! ATTCGGTGGAAGGGTGTGTT+TGG - Chr4:49699276-49699295 None:intergenic 50.0%
! GGGAACCAATTTGGTGGCTA+TGG + Chr4:49700319-49700338 MsG0480020854.01.T01:three_prime_UTR 50.0%
! GGTTGGGATGGGTAGGTTTT+GGG + Chr4:49696472-49696491 MsG0480020854.01.T01:CDS 50.0%
! TGGTTGGGATGGGTAGGTTT+TGG + Chr4:49696471-49696490 MsG0480020854.01.T01:CDS 50.0%
!! ATGAGTTGTTCTGGGGCCAA+AGG + Chr4:49697560-49697579 MsG0480020854.01.T01:CDS 50.0%
!! GGCTTTGGAAAGAGCATCCA+TGG - Chr4:49697715-49697734 None:intergenic 50.0%
!! TACCTCTGAAGCGGATCTTG+AGG + Chr4:49698174-49698193 MsG0480020854.01.T01:CDS 50.0%
!! TAGCTCGGTTGGTGAGCTAA+GGG + Chr4:49696532-49696551 MsG0480020854.01.T01:intron 50.0%
ACCAACCGAGCTACCTACGT+GGG - Chr4:49696525-49696544 None:intergenic 55.0%
AGGTTGAACCGGATTCTGCC+AGG + Chr4:49698194-49698213 MsG0480020854.01.T01:CDS 55.0%
CAGCTGGGATCCACACCAAA+TGG - Chr4:49697161-49697180 None:intergenic 55.0%
CTTACCCCCAAGCTAGTAGC+AGG - Chr4:49698466-49698485 None:intergenic 55.0%
GCCAAAGGCCACTCCAAGTA+TGG + Chr4:49697575-49697594 MsG0480020854.01.T01:intron 55.0%
GCCATACGGGCAGTTAACTC+AGG + Chr4:49696448-49696467 MsG0480020854.01.T01:intron 55.0%
GGGCAGTTAACTCAGGTGGT+TGG + Chr4:49696455-49696474 MsG0480020854.01.T01:intron 55.0%
TCATGCCCTGCGTCTTCACT+GGG + Chr4:49700129-49700148 MsG0480020854.01.T01:three_prime_UTR 55.0%
TTCATGCCCTGCGTCTTCAC+TGG + Chr4:49700128-49700147 MsG0480020854.01.T01:three_prime_UTR 55.0%
! GCTACTAGCTTGGGGGTAAG+TGG + Chr4:49698466-49698485 MsG0480020854.01.T01:exon 55.0%
!! CAAGTGGTGTACTGGCTCTC+AGG + Chr4:49697477-49697496 MsG0480020854.01.T01:CDS 55.0%
!! CATTTGGTGTGGATCCCAGC+TGG + Chr4:49697159-49697178 MsG0480020854.01.T01:CDS 55.0%
!! GTAGCTCGGTTGGTGAGCTA+AGG + Chr4:49696531-49696550 MsG0480020854.01.T01:intron 55.0%
!!! GATGGGTAGGTTTTGGGCAG+AGG + Chr4:49696478-49696497 MsG0480020854.01.T01:CDS 55.0%
CACCAACCGAGCTACCTACG+TGG - Chr4:49696526-49696545 None:intergenic 60.0%
CTCAGGTGGTTGGGATGGGT+AGG + Chr4:49696465-49696484 MsG0480020854.01.T01:intron 60.0%
GAACGACTTCCACGCCAGCT+GGG - Chr4:49697176-49697195 None:intergenic 60.0%
TCCCACGTAGGTAGCTCGGT+TGG + Chr4:49696521-49696540 MsG0480020854.01.T01:CDS 60.0%
TGAACGACTTCCACGCCAGC+TGG - Chr4:49697177-49697196 None:intergenic 60.0%
GGTGTGGATCCCAGCTGGCG+TGG + Chr4:49697164-49697183 MsG0480020854.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 49695799 49700650 49695799 ID=MsG0480020854.01;Name=MsG0480020854.01
Chr4 mRNA 49695799 49700650 49695799 ID=MsG0480020854.01.T01;Parent=MsG0480020854.01;Name=MsG0480020854.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.66|0.57|0.85|0.83|0.85|7|2166|368
Chr4 exon 49695799 49696050 49695799 ID=MsG0480020854.01.T01:exon:16524;Parent=MsG0480020854.01.T01
Chr4 exon 49696470 49696542 49696470 ID=MsG0480020854.01.T01:exon:16525;Parent=MsG0480020854.01.T01
Chr4 exon 49697066 49697321 49697066 ID=MsG0480020854.01.T01:exon:16526;Parent=MsG0480020854.01.T01
Chr4 exon 49697408 49697591 49697408 ID=MsG0480020854.01.T01:exon:16527;Parent=MsG0480020854.01.T01
Chr4 exon 49697679 49697762 49697679 ID=MsG0480020854.01.T01:exon:16528;Parent=MsG0480020854.01.T01
Chr4 exon 49698142 49698335 49698142 ID=MsG0480020854.01.T01:exon:16529;Parent=MsG0480020854.01.T01
Chr4 exon 49698421 49700650 49698421 ID=MsG0480020854.01.T01:exon:16530;Parent=MsG0480020854.01.T01
Chr4 CDS 49695799 49696050 49695799 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 CDS 49696470 49696542 49696470 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 CDS 49697066 49697321 49697066 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 CDS 49697408 49697591 49697408 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 CDS 49697679 49697762 49697679 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 CDS 49698142 49698335 49698142 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 CDS 49698421 49698484 49698421 ID=MsG0480020854.01.T01:cds;Parent=MsG0480020854.01.T01
Chr4 three_prime_UTR 49698485 49700650 49698485 ID=MsG0480020854.01.T01:three_prime_utr;Parent=MsG0480020854.01.T01
Gene Sequence

>MsG0480020854.01.T01

ATGTTCTGCTCTTGGCAAATAAATTCCCTAAAAATTCTATATGATTTCTGCCAGCGACTAGGAAGCTTTATGGAGATGTTATTTGGTGGGCGCTATGTGCTTCTTTTGATGTCACTATTTTCAATGTATTGTGGGTTAATCTACAATGAATTCTTCTCGGTTCCTTTTCACATATTTGGTGCGTCTGCTTACAAATGCCGAGATAGTTCATGCAGGTGTCTTCTATTTGTCTCTTTACAGCTTATAATTTATGTGGTTGGGATGGGTAGGTTTTGGGCAGAGGTCAAAGATTCAACCATTTTGTCCCACGTAGGTAGCTCGGTTGGCTTTAACTTGCGCTGTTTGATTTTTCGTTGTTCTCCTCCTCTTATTAGGGATGCACATACTACTGGCTTAGTAAAATACAGAGAACCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCCTTTCTAAACTCTCTCAAGATGAAGATGTCCATTCTATTTGGTGTGGTACATATGAACTTGGGAATTTTATTAAGTTATTTCAATGCTCGTTTCTTTGGCAGCTCACTGGATATAAGGTATCAGTTTGTGCCGCAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTCAAGTGGTGTACTGGCTCTCAGGCAGACCTTTATCATATAATGATTTACATGTTTTTAAGCCCCTTTGACAATCTTGGTGAGAATGAGTTGTTCTGGGGCCAAAGGCCACTCCAAGTTTTGTTATTGCTTCTGGCTCTAATTGCAGTTCCATGGATGCTCTTTCCAAAGCCTTTTATATTAAAGAAACTTCATAATGAGAGATTTCAAGGACGCAATTATGGTGTGCTTAATACCTCTGAAGCGGATCTTGAGGTTGAACCGGATTCTGCCAGGCAACATCATGAGGAATTTAATTTCAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTTGGTTCTGTTTCAAATACAGCATCATATCTTCGACTTTGGGCATTAAGCTTGGCTCATTCAGAACTTTCAACTGTTTTTTATGAGAAAGTCCTGCTACTAGCTTGGGGGTAA
Protein sequence

>MsG0480020854.01.T01

MFCSWQINSLKILYDFCQRLGSFMEMLFGGRYVLLLMSLFSMYCGLIYNEFFSVPFHIFGASAYKCRDSSCRCLLFVSLQLIIYVVGMGRFWAEVKDSTILSHVGSSVGFNLRCLIFRCSPPLIRDAHTTGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVVHMNLGILLSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHIMIYMFLSPFDNLGENELFWGQRPLQVLLLLLALIAVPWMLFPKPFILKKLHNERFQGRNYGVLNTSEADLEVEPDSARQHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWG*