AlfalfaGEDB | MsG0580028756.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028756.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028756.01.T01	XP_003616102.1	96.486	370	11	1	1	370	284	651	0	732

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028756.01.T01	Q5XVH5	40.248	323	91	14	1	316	228	455	6.04E-35	136

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028756.01.T01	G7K5X9	96.486	370	11	1	1	370	284	651	0.0	732

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048258.01	MsG0580028756.01	0.831265	1.841096e-55	1.987563e-52
MsG0080048311.01	MsG0580028756.01	0.834406	3.052468e-56	3.619163e-53
MsG0080048701.01	MsG0580028756.01	0.821118	4.786306e-53	3.859462e-50
MsG0080048775.01	MsG0580028756.01	0.852065	5.894504e-61	1.217139e-57
MsG0080048781.01	MsG0580028756.01	0.898725	4.003116e-77	4.791922e-73
MsG0080048842.01	MsG0580028756.01	-0.813368	2.652462e-51	1.728913e-48
MsG0080048996.01	MsG0580028756.01	0.803746	3.009399e-49	1.524302e-46
MsG0080049140.01	MsG0580028756.01	0.906323	1.677147e-80	2.825981e-76
MsG0180000111.01	MsG0580028756.01	0.850583	1.546299e-60	3.043246e-57
MsG0180000314.01	MsG0580028756.01	0.863272	2.801380e-64	8.444317e-61

Showing 1 to 10 of 295 entries

Previous1 2 3 4 5…30Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028756.01.T01	MTR_5g076140	96.486	370	11	1	1	370	284	651	0.0	732
MsG0580028756.01.T01	MTR_3g063210	42.070	454	140	14	1	366	246	664	5.57e-72	237

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028756.01.T01	AT5G37010	39.336	422	150	22	1	368	244	613	1.24e-46	168
MsG0580028756.01.T01	AT1G65710	40.248	323	91	14	1	316	228	455	6.16e-36	136

Showing 1 to 2 of 2 entries

Previous1Next

Find 146 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTCTTCTTCTTCTAA+TGG	0.317765	5:+85899569	MsG0580028756.01.T01:five_prime_UTR
AAAGTGATTTGGTGGAAGAA+AGG	0.463048	5:-85898961	None:intergenic
AACAACAATAATAACAGTAA+TGG	0.562799	5:+85899689	MsG0580028756.01.T01:five_prime_UTR
AACAATTGAAATGGTGAAAT+GGG	0.340674	5:-85898858	None:intergenic
AACAGTAATGGTTCTGGTTC+AGG	0.276473	5:+85899701	MsG0580028756.01.T01:five_prime_UTR
AACTTTCAGATATATTAATG+TGG	0.640475	5:-85898773	None:intergenic
AAGAATGTGGTGATGCCATC+AGG	0.447953	5:+85900832	MsG0580028756.01.T01:CDS
AAGCTTTCTTTGGTGAATTC+CGG	0.339092	5:-85899553	None:intergenic
AAGTAGTAATGAAGTGTATG+TGG	0.536079	5:-85900935	None:intergenic
AAGTATGTGACTGTTAAGAG+AGG	0.686254	5:+85901183	MsG0580028756.01.T01:CDS

Showing 1 to 10 of 146 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTTCTTCTTCTTCTAA+TGG	+	Chr5:85899569-85899588	MsG0580028756.01.T01:five_prime_UTR	30.0%
AAGTAGTAATGAAGTGTATG+TGG	-	Chr5:85900938-85900957	None:intergenic	30.0%
ACAATTGAAATGGTGAAATG+GGG	-	Chr5:85898860-85898879	None:intergenic	30.0%
AGAAACCAAATGTTGAAATG+AGG	+	Chr5:85900695-85900714	MsG0580028756.01.T01:intron	30.0%
ATCATTGAACAGCAACAATA+AGG	+	Chr5:85899258-85899277	MsG0580028756.01.T01:five_prime_UTR	30.0%
ATGGATAAAAGTAACAATGG+TGG	+	Chr5:85899779-85899798	MsG0580028756.01.T01:CDS	30.0%
CAATCAAATGCTAATAATGG+TGG	+	Chr5:85900058-85900077	MsG0580028756.01.T01:CDS	30.0%
CAGATATATTAATGTGGAAG+AGG	-	Chr5:85898770-85898789	None:intergenic	30.0%
CATGATCATTTACAACTTCT+GGG	-	Chr5:85899087-85899106	None:intergenic	30.0%
CCACAATCAAATGCTAATAA+TGG	+	Chr5:85900055-85900074	MsG0580028756.01.T01:CDS	30.0%

Showing 1 to 10 of 186 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	85898721	85901632	85898721	ID=MsG0580028756.01;Name=MsG0580028756.01
Chr5	mRNA	85898721	85901632	85898721	ID=MsG0580028756.01.T01;Parent=MsG0580028756.01;Name=MsG0580028756.01.T01;_AED=0.21;_eAED=0.21;_QI=1022\|1\|1\|1\|1\|1\|2\|213\|370
Chr5	exon	85898721	85900132	85898721	ID=MsG0580028756.01.T01:exon:33459;Parent=MsG0580028756.01.T01
Chr5	exon	85900697	85901632	85900697	ID=MsG0580028756.01.T01:exon:33460;Parent=MsG0580028756.01.T01
Chr5	five_prime_UTR	85898721	85899742	85898721	ID=MsG0580028756.01.T01:five_prime_utr;Parent=MsG0580028756.01.T01
Chr5	CDS	85899743	85900132	85899743	ID=MsG0580028756.01.T01:cds;Parent=MsG0580028756.01.T01
Chr5	CDS	85900697	85901419	85900697	ID=MsG0580028756.01.T01:cds;Parent=MsG0580028756.01.T01
Chr5	three_prime_UTR	85901420	85901632	85901420	ID=MsG0580028756.01.T01:three_prime_utr;Parent=MsG0580028756.01.T01

Gene Sequence

>MsG0580028756.01.T01

ATGGTGACTGTTCCTGCTACTGTTACATCATTGGTTATGGATAAAAGTAACAATGGTGGAGGAGAAGGTGTTAAGAGGGTTATTGTGAAGAGAAATGTTGCATCACCACGTTCAATGTCACCTGCTAGAGGAAATGGGAATGGTGTGAATCAGCAACAGCAACGTTCAATGTCACCTGCAAGAGGAAATGGGAATGTAGTGAATCAGAATCAGCAACCTTCTCTTAGCAGGAATAACTCTGCAAGGAAAACTGAAGTTTCACCTTATAGAAGAAACCCTCTTAGTGAGGTTGATCCTAATTCACTTGCTTATCCACAATCAAATGCTAATAATGGTGGAAACAAAGTTCAGAACAAAGGCAAAAAGGAGATTGAAGTTGAGACTATTCAGAAACCAAATGTTGAAATGAGGGACAACACAAGAAACAGGACAAACAGCAGAGTTGCTATGGAAAAGGGTGTGAATTGCCACACGAAGGAACAACAACAGGAAGAGATCAAGGTAATGTCTGATAATGCTATTGTGAAGAATGTGGTGATGCCATCAGGGATTACAAGAAGCAGATCATCTAGAAGATCAAAAGACTTCGACACCGTCAATCCCGAACCTCTAACCAATCCACCACAAACCACATACACTTCATTACTACTTGAAGACATTCAAAACTTCCATCAAAAGAACACAACACAACCTTCTGTTTCTCTTCCAGCTTGTCTCAACAAAGCTTGTTCCATCCTTGAAGCTGTTGCTGATCTTAACTCCACAACAAGTTCAACTTTCTCTAGGAATGAGTACAACAATGTTGCTGTTCCTGAATCATCATTTGTAGAATCTGAGCTTGTTGTGAGTGATGATGTGATGGAACCAAGTTTACATAAGTATGTGACTGTTAAGAGAGGTGGTTCACTTTGTGAGGATCAGGAGAGTTCAGGAAGTAATAGCTTCACTGTGAGTAGTGGTCAACAACAATGGAACATTTGTTCTTCTGGTGATTCATCGGATTGTTGGAGTTCGAGATTGAATTCAAAAGAGGAGAGTTTGAAAAGAAGAGAGTGTGATCATCAGCATAGTGGTGGTATTGGACGTGGAAGACTTGCTACTGCATCAACATAG

Protein sequence

>MsG0580028756.01.T01

MVTVPATVTSLVMDKSNNGGGEGVKRVIVKRNVASPRSMSPARGNGNGVNQQQQRSMSPARGNGNVVNQNQQPSLSRNNSARKTEVSPYRRNPLSEVDPNSLAYPQSNANNGGNKVQNKGKKEIEVETIQKPNVEMRDNTRNRTNSRVAMEKGVNCHTKEQQQEEIKVMSDNAIVKNVVMPSGITRSRSSRRSKDFDTVNPEPLTNPPQTTYTSLLLEDIQNFHQKNTTQPSVSLPACLNKACSILEAVADLNSTTSSTFSRNEYNNVAVPESSFVESELVVSDDVMEPSLHKYVTVKRGGSLCEDQESSGSNSFTVSSGQQQWNICSSGDSSDCWSSRLNSKEESLKRRECDHQHSGGIGRGRLATAST*