AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047431.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047431.01.T01 MTR_4g127290 91.667 204 13 1 43 246 130 329 8.17e-124 375
MsG0880047431.01.T01 MTR_4g127290 80.000 80 14 1 271 350 489 566 1.90e-31 125
MsG0880047431.01.T01 MTR_4g127290 100.000 53 0 0 1 53 1 53 1.95e-26 111
MsG0880047431.01.T01 MTR_2g038200 71.084 83 22 2 164 246 399 479 1.15e-26 112
MsG0880047431.01.T01 MTR_2g038200 79.070 43 9 0 1 43 1 43 3.57e-14 74.3
MsG0880047431.01.T01 MTR_1g057150 61.702 47 18 0 1 47 1 47 3.78e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047431.01.T01 AT5G57130 78.000 50 11 0 1 50 1 50 2.46e-16 80.9
MsG0880047431.01.T01 AT5G57130 56.164 73 28 2 60 132 165 233 3.88e-12 68.2
MsG0880047431.01.T01 AT4G29920 76.087 46 11 0 1 46 1 46 2.24e-13 72.0
MsG0880047431.01.T01 AT4G29920 76.087 46 11 0 1 46 1 46 2.30e-13 72.0
MsG0880047431.01.T01 AT4G29920 49.412 85 29 3 164 240 431 509 4.15e-11 65.1
MsG0880047431.01.T01 AT3G52490 65.217 46 16 0 1 46 1 46 4.39e-13 70.9

Find 61 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATAGCATTTCAGAAAA+TGG 0.180008 8:+86195561 None:intergenic
AGAAGAAAACATTGCCTTTC+TGG 0.197917 8:-86196398 MsG0880047431.01.T01:CDS
TTTAAATGTTATAATAGTTC+TGG 0.230049 8:-86197414 MsG0880047431.01.T01:CDS
CTGAGAGAAATTTCATGAAT+TGG 0.260874 8:+86195478 None:intergenic
GCTTGACCCTTCATTCTTCC+AGG 0.278647 8:-86197200 MsG0880047431.01.T01:intron
TGCTATTGCAGAATCAGTTT+TGG 0.328625 8:-86195639 MsG0880047431.01.T01:CDS
GATTCCATTGCAAGCATAGA+AGG 0.340258 8:-86195911 MsG0880047431.01.T01:CDS
AGCTGATTTGGTCCTTCAAT+TGG 0.342833 8:-86195613 MsG0880047431.01.T01:CDS
CTAATAGCATTTCAGAAAAT+GGG 0.352190 8:+86195562 None:intergenic
ATTCTCTTGTGTTGGCTAGA+AGG 0.358333 8:-86197881 MsG0880047431.01.T01:CDS
TTTGAAGGAACTTAGTCTTA+AGG 0.360363 8:+86197809 None:intergenic
TTTCAGACAGAACAATTTCA+TGG 0.360555 8:-86197319 MsG0880047431.01.T01:CDS
AAAGCCCTTTAGCAGTAATA+AGG 0.361117 8:-86196502 MsG0880047431.01.T01:CDS
TGGCACAGAAGAACAAAATA+AGG 0.368675 8:-86196364 MsG0880047431.01.T01:intron
TGAGAGAAATTTCATGAATT+GGG 0.385237 8:+86195479 None:intergenic
CCTTTCTGGCTTCAGTCTCA+TGG 0.390835 8:-86196384 MsG0880047431.01.T01:CDS
TTGTTTCCAGCATATGAGAT+AGG 0.393515 8:+86196523 None:intergenic
TTGATGATCCTAGTGTTAGT+AGG 0.397262 8:-86197515 MsG0880047431.01.T01:CDS
CTGTGATTCTCACTAGTTGA+AGG 0.411339 8:+86197363 None:intergenic
ACTTAAGACAAGCCCTTTGA+AGG 0.417365 8:+86197794 None:intergenic
TTAAATGTTATAATAGTTCT+GGG 0.419365 8:-86197413 MsG0880047431.01.T01:CDS
AGTAGGGTTATGAGAGAAGC+TGG 0.424536 8:-86197498 MsG0880047431.01.T01:CDS
TGCACCTTATTACTGCTAAA+GGG 0.429521 8:+86196498 None:intergenic
TTCATGAAATTTCTCTCAGA+TGG 0.451801 8:-86195474 MsG0880047431.01.T01:CDS
TTTGAAGCATTCTCTTGTGT+TGG 0.454108 8:-86197889 MsG0880047431.01.T01:CDS
AATATTACCTGGAAGAATGA+AGG 0.464963 8:+86197193 None:intergenic
ATGCACCTTATTACTGCTAA+AGG 0.466662 8:+86196497 None:intergenic
TAAGACTAAGTTCCTTCAAA+GGG 0.485070 8:-86197806 MsG0880047431.01.T01:CDS
ACTGAGTTGACGAGTACATC+AGG 0.485948 8:-86197231 MsG0880047431.01.T01:CDS
TTTACCTTCTATGCTTGCAA+TGG 0.488616 8:+86195907 None:intergenic
TGATGATCCTAGTGTTAGTA+GGG 0.489344 8:-86197514 MsG0880047431.01.T01:CDS
TCTCTCAGATGGATATGAAA+AGG 0.498914 8:-86195463 MsG0880047431.01.T01:CDS
TTAAGACTAAGTTCCTTCAA+AGG 0.503369 8:-86197807 MsG0880047431.01.T01:CDS
AGATGCTCATCTTGGAATCA+AGG 0.504959 8:+86196553 None:intergenic
GTTCTGAGAGATGCTCATCT+TGG 0.505466 8:+86196545 None:intergenic
TCAGAACCTATCTCATATGC+TGG 0.523908 8:-86196529 MsG0880047431.01.T01:CDS
CCATGAGACTGAAGCCAGAA+AGG 0.527419 8:+86196384 None:intergenic
GAGAAAACATCAACAGCTTG+TGG 0.530991 8:-86195532 MsG0880047431.01.T01:CDS
ACGAGTACATCAGGTGGACT+TGG 0.541210 8:-86197222 MsG0880047431.01.T01:CDS
ATATATCAAGTGATGCGCTC+AGG 0.544488 8:-86197957 None:intergenic
TGAAGCAGCCTCTGCTGTGA+GGG 0.545563 8:+86197914 None:intergenic
GCTCAATTTCTCAGACCTGC+AGG 0.549147 8:-86196423 MsG0880047431.01.T01:CDS
CAATGATGATTCAAGTGAAA+AGG 0.551243 8:-86195858 MsG0880047431.01.T01:intron
CTTGCAATGGAATCAAAGAC+TGG 0.557776 8:+86195920 None:intergenic
ATATTACCTGGAAGAATGAA+GGG 0.561317 8:+86197194 None:intergenic
TGTTCTGTCTGAAACTGCTA+AGG 0.561994 8:+86197328 None:intergenic
TCACTAGTTGAAGGTGAACA+TGG 0.565455 8:+86197372 None:intergenic
CTCATAACCCTACTAACACT+AGG 0.579503 8:+86197507 None:intergenic
GTAAAGATTAGTCTTGCACT+TGG 0.591838 8:-86195881 MsG0880047431.01.T01:CDS
AAAGTGATGGCTACATGTAG+AGG 0.593224 8:+86197837 None:intergenic
TCTTAAGGTAAGTAAAGTGA+TGG 0.602666 8:+86197824 None:intergenic
CTTGTGTTGGCTAGAAGGAG+AGG 0.606431 8:-86197876 MsG0880047431.01.T01:CDS
CTGAAGCAGCCTCTGCTGTG+AGG 0.607118 8:+86197913 None:intergenic
TAGCAGTAATAAGGTGCATG+AGG 0.621940 8:-86196493 MsG0880047431.01.T01:CDS
TAATAGCATTTCAGAAAATG+GGG 0.629233 8:+86195563 None:intergenic
TATCAAGTGATGCGCTCAGG+AGG 0.632949 8:-86197954 None:intergenic
GCAGCAGACCCTCACAGCAG+AGG 0.647393 8:-86197922 MsG0880047431.01.T01:CDS
TAGAAGGAGAGGTCATCCAC+AGG 0.649362 8:-86197865 MsG0880047431.01.T01:CDS
AATGTTATAATAGTTCTGGG+TGG 0.680617 8:-86197410 MsG0880047431.01.T01:CDS
ACATGTAGAGGAGTGACCTG+TGG 0.684775 8:+86197849 None:intergenic
GAGTTGACGAGTACATCAGG+TGG 0.710146 8:-86197228 MsG0880047431.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATGTTATAATAGTTCT+GGG - Chr8:86195978-86195997 MsG0880047431.01.T01:intron 15.0%
!! TTTAAATGTTATAATAGTTC+TGG - Chr8:86195977-86195996 MsG0880047431.01.T01:intron 15.0%
!!! AGTTTAATTTCAATGATAAA+GGG - Chr8:86197438-86197457 MsG0880047431.01.T01:CDS 15.0%
!!! TTCTTAATTTGTTTGATTTA+AGG - Chr8:86196341-86196360 MsG0880047431.01.T01:intron 15.0%
!! AAGCAAAATAAAATATTACC+TGG + Chr8:86196212-86196231 None:intergenic 20.0%
!! ATCATTGAAATTAAACTCAA+TGG + Chr8:86197435-86197454 None:intergenic 20.0%
!! CAAAATGAAATTCATTTACA+TGG - Chr8:86197682-86197701 MsG0880047431.01.T01:intron 20.0%
!! CATTTAAAAACAGAATTAGA+AGG + Chr8:86195965-86195984 None:intergenic 20.0%
!! CCATAATTAAGCAAATAAAT+AGG + Chr8:86196785-86196804 None:intergenic 20.0%
!! CCTATTTATTTGCTTAATTA+TGG - Chr8:86196782-86196801 MsG0880047431.01.T01:intron 20.0%
!!! ATGAATAATTCAACATTTTC+AGG - Chr8:86197225-86197244 MsG0880047431.01.T01:CDS 20.0%
!!! GAGTTTAATTTCAATGATAA+AGG - Chr8:86197437-86197456 MsG0880047431.01.T01:CDS 20.0%
!!! TGTTTGATTTAAGGTATAAA+AGG - Chr8:86196350-86196369 MsG0880047431.01.T01:intron 20.0%
!!! TTCATTTTGTTTTGTTGATT+TGG + Chr8:86197671-86197690 None:intergenic 20.0%
!!! TTTACATGGTTATTTTTACA+AGG - Chr8:86197696-86197715 MsG0880047431.01.T01:intron 20.0%
! AAAGACTACACTTTATCTAA+AGG - Chr8:86196668-86196687 MsG0880047431.01.T01:intron 25.0%
! ACACATGTTATGTTACTAAA+AGG + Chr8:86196322-86196341 None:intergenic 25.0%
! ATCAGTCAAATTATTTGAGT+TGG - Chr8:86196637-86196656 MsG0880047431.01.T01:intron 25.0%
! CTAATAGCATTTCAGAAAAT+GGG + Chr8:86197832-86197851 None:intergenic 25.0%
! TAATAGCATTTCAGAAAATG+GGG + Chr8:86197831-86197850 None:intergenic 25.0%
! TATAACACTTAGTACATGTT+TGG - Chr8:86196242-86196261 MsG0880047431.01.T01:intron 25.0%
! TCAATTGGATATGCTAAAAA+AGG - Chr8:86197793-86197812 MsG0880047431.01.T01:intron 25.0%
! TGAGAGAAATTTCATGAATT+GGG + Chr8:86197915-86197934 None:intergenic 25.0%
! TTAAATGCAACCAAAAAGAA+AGG - Chr8:86196388-86196407 MsG0880047431.01.T01:CDS 25.0%
!! ATTCCATTTTCTTTTCAACT+CGG + Chr8:86197260-86197279 None:intergenic 25.0%
!! CTTATGTTTACCTTTCTTTT+TGG + Chr8:86196401-86196420 None:intergenic 25.0%
!!! TTGAGCTTCTTTTTCATAAT+TGG + Chr8:86196954-86196973 None:intergenic 25.0%
!!! TTTTTAGCATATCCAATTGA+AGG + Chr8:86197793-86197812 None:intergenic 25.0%
AATATTACCTGGAAGAATGA+AGG + Chr8:86196201-86196220 None:intergenic 30.0%
ATAATGCAATCATCGTGTAT+TGG + Chr8:86197109-86197128 None:intergenic 30.0%
ATATTACCTGGAAGAATGAA+GGG + Chr8:86196200-86196219 None:intergenic 30.0%
CAATGATGATTCAAGTGAAA+AGG - Chr8:86197533-86197552 MsG0880047431.01.T01:CDS 30.0%
CACATCTATGATAGTACTAT+TGG - Chr8:86197199-86197218 MsG0880047431.01.T01:intron 30.0%
CCTAATAGCATTTCAGAAAA+TGG + Chr8:86197833-86197852 None:intergenic 30.0%
CTGAGAGAAATTTCATGAAT+TGG + Chr8:86197916-86197935 None:intergenic 30.0%
GTTTCAATGTAGCTCTTAAT+AGG - Chr8:86195679-86195698 MsG0880047431.01.T01:intron 30.0%
TAAGACTAAGTTCCTTCAAA+GGG - Chr8:86195585-86195604 MsG0880047431.01.T01:CDS 30.0%
TCTTAAGGTAAGTAAAGTGA+TGG + Chr8:86195570-86195589 None:intergenic 30.0%
TGATGCTTGATGAATTATTG+AGG + Chr8:86197359-86197378 None:intergenic 30.0%
TTAAGACTAAGTTCCTTCAA+AGG - Chr8:86195584-86195603 MsG0880047431.01.T01:CDS 30.0%
TTCATGAAATTTCTCTCAGA+TGG - Chr8:86197917-86197936 MsG0880047431.01.T01:CDS 30.0%
TTTCAGACAGAACAATTTCA+TGG - Chr8:86196072-86196091 MsG0880047431.01.T01:intron 30.0%
! AACAAGGCTTTTGATATTGA+AGG + Chr8:86197643-86197662 None:intergenic 30.0%
! TAACCGAGTTGAAAAGAAAA+TGG - Chr8:86197254-86197273 MsG0880047431.01.T01:CDS 30.0%
!! AATGTTATAATAGTTCTGGG+TGG - Chr8:86195981-86196000 MsG0880047431.01.T01:intron 30.0%
!! ACACATGTTAAAAGCATTGT+TGG - Chr8:86196527-86196546 MsG0880047431.01.T01:CDS 30.0%
!! ATGTTAAAAGCATTGTTGGT+TGG - Chr8:86196531-86196550 MsG0880047431.01.T01:CDS 30.0%
!! TGTTGATTTGGTATCAAACA+AGG + Chr8:86197659-86197678 None:intergenic 30.0%
!! TTTGAAGGAACTTAGTCTTA+AGG + Chr8:86195585-86195604 None:intergenic 30.0%
!!! CCATTTTCTGAAATGCTATT+AGG - Chr8:86197830-86197849 MsG0880047431.01.T01:CDS 30.0%
AAAGCCCTTTAGCAGTAATA+AGG - Chr8:86196889-86196908 MsG0880047431.01.T01:intron 35.0%
AGAAGAAAACATTGCCTTTC+TGG - Chr8:86196993-86197012 MsG0880047431.01.T01:intron 35.0%
ATGCACCTTATTACTGCTAA+AGG + Chr8:86196897-86196916 None:intergenic 35.0%
CTAAAAGGTTAGTGCATGTT+TGG + Chr8:86196307-86196326 None:intergenic 35.0%
GATGATTCAAGTGAAAAGGT+GGG - Chr8:86197537-86197556 MsG0880047431.01.T01:intron 35.0%
TCTCTCAGATGGATATGAAA+AGG - Chr8:86197928-86197947 MsG0880047431.01.T01:CDS 35.0%
TGATGATCCTAGTGTTAGTA+GGG - Chr8:86195877-86195896 MsG0880047431.01.T01:CDS 35.0%
TGATGATTCAAGTGAAAAGG+TGG - Chr8:86197536-86197555 MsG0880047431.01.T01:intron 35.0%
TGCACCTTATTACTGCTAAA+GGG + Chr8:86196896-86196915 None:intergenic 35.0%
TGGCACAGAAGAACAAAATA+AGG - Chr8:86197027-86197046 MsG0880047431.01.T01:intron 35.0%
TTGACTGATTAACGTGTAAG+AGG + Chr8:86196626-86196645 None:intergenic 35.0%
TTGTTTCCAGCATATGAGAT+AGG + Chr8:86196871-86196890 None:intergenic 35.0%
TTTACCTTCTATGCTTGCAA+TGG + Chr8:86197487-86197506 None:intergenic 35.0%
! AATGTGTTGAGGAGTATGTA+CGG - Chr8:86196486-86196505 MsG0880047431.01.T01:CDS 35.0%
! TGCTATTGCAGAATCAGTTT+TGG - Chr8:86197752-86197771 MsG0880047431.01.T01:intron 35.0%
! TTGATGATCCTAGTGTTAGT+AGG - Chr8:86195876-86195895 MsG0880047431.01.T01:CDS 35.0%
! TTTGAAGCATTCTCTTGTGT+TGG - Chr8:86195502-86195521 MsG0880047431.01.T01:CDS 35.0%
!! AAAGTGTTGTCTAGTTCTGA+TGG - Chr8:86196433-86196452 MsG0880047431.01.T01:CDS 35.0%
!! AATCAAAGGAGAAGTGTTGT+TGG + Chr8:86195708-86195727 None:intergenic 35.0%
!! ATTTGTTGTGCAATGTGTTG+AGG - Chr8:86196475-86196494 MsG0880047431.01.T01:CDS 35.0%
!! GTAAAGATTAGTCTTGCACT+TGG - Chr8:86197510-86197529 MsG0880047431.01.T01:CDS 35.0%
!!! GATTTTGGTGCTGTTTGTTT+TGG + Chr8:86197303-86197322 None:intergenic 35.0%
AAAGTGATGGCTACATGTAG+AGG + Chr8:86195557-86195576 None:intergenic 40.0%
ACAAACAGCACCAAAATCAC+TGG - Chr8:86197305-86197324 MsG0880047431.01.T01:CDS 40.0%
ACTTAAGACAAGCCCTTTGA+AGG + Chr8:86195600-86195619 None:intergenic 40.0%
AGATGCTCATCTTGGAATCA+AGG + Chr8:86196841-86196860 None:intergenic 40.0%
AGCACCAAAATCACTGGAAT+GGG - Chr8:86197311-86197330 MsG0880047431.01.T01:CDS 40.0%
AGGAATAGTTTCAGATGCCA+TGG + Chr8:86197623-86197642 None:intergenic 40.0%
AGTGGATGTTGTGAAGTTGA+TGG + Chr8:86195636-86195655 None:intergenic 40.0%
CTCATAACCCTACTAACACT+AGG + Chr8:86195887-86195906 None:intergenic 40.0%
CTGTGATTCTCACTAGTTGA+AGG + Chr8:86196031-86196050 None:intergenic 40.0%
CTTGCAATGGAATCAAAGAC+TGG + Chr8:86197474-86197493 None:intergenic 40.0%
GAGAAAACATCAACAGCTTG+TGG - Chr8:86197859-86197878 MsG0880047431.01.T01:CDS 40.0%
GATTCCATTGCAAGCATAGA+AGG - Chr8:86197480-86197499 MsG0880047431.01.T01:CDS 40.0%
TAGCAGTAATAAGGTGCATG+AGG - Chr8:86196898-86196917 MsG0880047431.01.T01:intron 40.0%
TATGTACGGTTACTGAGCTA+TGG - Chr8:86196500-86196519 MsG0880047431.01.T01:CDS 40.0%
TATTGCAAGAGAATGTGCCA+TGG - Chr8:86197603-86197622 MsG0880047431.01.T01:intron 40.0%
TCACTAGTTGAAGGTGAACA+TGG + Chr8:86196022-86196041 None:intergenic 40.0%
TCAGAACCTATCTCATATGC+TGG - Chr8:86196862-86196881 MsG0880047431.01.T01:intron 40.0%
TGAAGCTGAGAGTGAATCAA+AGG + Chr8:86195722-86195741 None:intergenic 40.0%
! AATGTTTTCTTCTGTCCTGC+AGG + Chr8:86196986-86197005 None:intergenic 40.0%
! CTCGTCAACTCAGTTCTTTT+TGG + Chr8:86196154-86196173 None:intergenic 40.0%
! GTCAACTCAGTTCTTTTTGG+TGG + Chr8:86196151-86196170 None:intergenic 40.0%
! TGTTCTGTCTGAAACTGCTA+AGG + Chr8:86196066-86196085 None:intergenic 40.0%
!! AGCATTGTTGGTTGGTAGTA+AGG - Chr8:86196539-86196558 MsG0880047431.01.T01:CDS 40.0%
!! AGCTGATTTGGTCCTTCAAT+TGG - Chr8:86197778-86197797 MsG0880047431.01.T01:intron 40.0%
!! ATGTTGTGAAGTTGATGGTG+TGG + Chr8:86195631-86195650 None:intergenic 40.0%
!! ATTCTCTTGTGTTGGCTAGA+AGG - Chr8:86195510-86195529 MsG0880047431.01.T01:CDS 40.0%
!! TCAAGAGCTCTAGATTGAAG+TGG + Chr8:86195654-86195673 None:intergenic 40.0%
!!! CAGTTTTGGTTCAGCTGATT+TGG - Chr8:86197766-86197785 MsG0880047431.01.T01:intron 40.0%
!!! GTTTGTTTTGGTGTAGACAG+TGG + Chr8:86197291-86197310 None:intergenic 40.0%
AGTAGGGTTATGAGAGAAGC+TGG - Chr8:86195893-86195912 MsG0880047431.01.T01:CDS 45.0%
CAGCACCAAAATCACTGGAA+TGG - Chr8:86197310-86197329 MsG0880047431.01.T01:CDS 45.0%
GCACAAGCTCATCAAAGAAG+AGG - Chr8:86195775-86195794 MsG0880047431.01.T01:intron 45.0%
GCACCAAAATCACTGGAATG+GGG - Chr8:86197312-86197331 MsG0880047431.01.T01:CDS 45.0%
! ACTGAGTTGACGAGTACATC+AGG - Chr8:86196160-86196179 MsG0880047431.01.T01:intron 45.0%
! CAATGCAGCAATGAGAGCAT+TGG + Chr8:86195749-86195768 None:intergenic 45.0%
! TTGCCCCATTCCAGTGATTT+TGG + Chr8:86197318-86197337 None:intergenic 45.0%
!! CAATGGTGCTGCATGATTGT+TGG + Chr8:86197418-86197437 None:intergenic 45.0%
!! GTTCTGAGAGATGCTCATCT+TGG + Chr8:86196849-86196868 None:intergenic 45.0%
ACATGTAGAGGAGTGACCTG+TGG + Chr8:86195545-86195564 None:intergenic 50.0%
CCATGAGACTGAAGCCAGAA+AGG + Chr8:86197010-86197029 None:intergenic 50.0%
GACGGAATCGAGGTGTAAGA+TGG + Chr8:86197394-86197413 None:intergenic 50.0%
GAGTTGACGAGTACATCAGG+TGG - Chr8:86196163-86196182 MsG0880047431.01.T01:intron 50.0%
GCTCAATTTCTCAGACCTGC+AGG - Chr8:86196968-86196987 MsG0880047431.01.T01:intron 50.0%
GCTTGACCCTTCATTCTTCC+AGG - Chr8:86196191-86196210 MsG0880047431.01.T01:intron 50.0%
GGAATCGAGGTGTAAGATGG+AGG + Chr8:86197391-86197410 None:intergenic 50.0%
TAGAAGGAGAGGTCATCCAC+AGG - Chr8:86195526-86195545 MsG0880047431.01.T01:CDS 50.0%
TGCTGCATGATTGTTGGCGA+CGG + Chr8:86197412-86197431 None:intergenic 50.0%
! ACGAGTACATCAGGTGGACT+TGG - Chr8:86196169-86196188 MsG0880047431.01.T01:intron 50.0%
!! CCTTTCTGGCTTCAGTCTCA+TGG - Chr8:86197007-86197026 MsG0880047431.01.T01:intron 50.0%
!! CTTGTGTTGGCTAGAAGGAG+AGG - Chr8:86195515-86195534 MsG0880047431.01.T01:CDS 50.0%
AGCGCAGCAGCAACAGCAAA+CGG - Chr8:86195809-86195828 MsG0880047431.01.T01:intron 55.0%
GATTGTTGGCGACGGAATCG+AGG + Chr8:86197404-86197423 None:intergenic 55.0%
GTTGCTGCTGCGCTGTTCTA+TGG + Chr8:86195803-86195822 None:intergenic 55.0%
TGAAGCAGCCTCTGCTGTGA+GGG + Chr8:86195480-86195499 None:intergenic 55.0%
CTGAAGCAGCCTCTGCTGTG+AGG + Chr8:86195481-86195500 None:intergenic 60.0%
GCAGCAGACCCTCACAGCAG+AGG - Chr8:86195469-86195488 MsG0880047431.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 86195446 86197967 86195446 ID=MsG0880047431.01;Name=MsG0880047431.01
Chr8 mRNA 86195446 86197967 86195446 ID=MsG0880047431.01.T01;Parent=MsG0880047431.01;Name=MsG0880047431.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|5|0|355
Chr8 exon 86197796 86197967 86197796 ID=MsG0880047431.01.T01:exon:2050;Parent=MsG0880047431.01.T01
Chr8 exon 86197201 86197552 86197201 ID=MsG0880047431.01.T01:exon:2049;Parent=MsG0880047431.01.T01
Chr8 exon 86196365 86196578 86196365 ID=MsG0880047431.01.T01:exon:2048;Parent=MsG0880047431.01.T01
Chr8 exon 86195859 86195954 86195859 ID=MsG0880047431.01.T01:exon:2047;Parent=MsG0880047431.01.T01
Chr8 exon 86195446 86195679 86195446 ID=MsG0880047431.01.T01:exon:2046;Parent=MsG0880047431.01.T01
Chr8 CDS 86197796 86197967 86197796 ID=MsG0880047431.01.T01:cds;Parent=MsG0880047431.01.T01
Chr8 CDS 86197201 86197552 86197201 ID=MsG0880047431.01.T01:cds;Parent=MsG0880047431.01.T01
Chr8 CDS 86196365 86196578 86196365 ID=MsG0880047431.01.T01:cds;Parent=MsG0880047431.01.T01
Chr8 CDS 86195859 86195954 86195859 ID=MsG0880047431.01.T01:cds;Parent=MsG0880047431.01.T01
Chr8 CDS 86195446 86195679 86195446 ID=MsG0880047431.01.T01:cds;Parent=MsG0880047431.01.T01
Gene Sequence

>MsG0880047431.01.T01

ATGCGCTCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCAGAGGCTGCTTCAGTTTTGAAGCATTCTCTTGTGTTGGCTAGAAGGAGAGGTCATCCACAGGTCACTCCTCTACATGTAGCCATCACTTTACTTACCTTAAGACTAAGTTCCTTCAAAGGGCTTGTCTTAACTTTTATATCTATACTTGATGATCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGATTCTCTAGTACTCTTGTTAAGAACAATTTAGAAGACTCTTTCTCACCTTCTAATTCTGTTTTTAAATGTTATAATAGTTCTGGGTGGTGTGTGTTTTCATCTCCATGTTCACCTTCAACTAGTGAGAATCACAGAGAAAACATCAACCTTAGCAGTTTCAGACAGAACAATTTCATGGCTGCTACTAGTGCTAAGCACAGTTCTTGTGAGTTTAACTCAGTTCTCTTTTCTCCACCAAAAAGAACTGAGTTGACGAGTACATCAGGTGGACTTGGCTTGACCCTTCATTCTTCCAGTGTCCTTGATTCCAAGATGAGCATCTCTCAGAACCTATCTCATATGCTGGAAACAAAGCCCTTTAGCAGTAATAAGGTGCATGAGGATAAACTTAATTGTTGTGAAGAATGTGCTTCCAATTATGAAAAAGAAGCTCAATTTCTCAGACCTGCAGGACAGAAGAAAACATTGCCTTTCTGGCTTCAGTCTCATGGCACAGAAGAACAAAATAAGGGAAACACAAAGCCAGTCTTTGATTCCATTGCAAGCATAGAAGGTAAAGAAGTAAAGATTAGTCTTGCACTTGGCAATGATGATTCAAGTGAAAAGCAAGAGAAGATTAGCACTTGCTATTGCAGAATCAGTTTTGGTTCAGCTGATTTGGTCCTTCAATTGGATATGCTAAAAAAGGAAACTTTAATAGCCCCATTTTCTGAAATGCTATTAGGAGCATTGAGAAAACATCAACAGCTTGTGGTTTTGATTGAAAATGTTGATTCTGCTGATACCCAATTCATGAAATTTCTCTCAGATGGATATGAAAAGGAAAGTTTGAAACTTTAA

Protein sequence

>MsG0880047431.01.T01

MRSGGCALQQTLTAEAASVLKHSLVLARRRGHPQVTPLHVAITLLTLRLSSFKGLVLTFISILDDPSVSRVMREAGFSSTLVKNNLEDSFSPSNSVFKCYNSSGWCVFSSPCSPSTSENHRENINLSSFRQNNFMAATSAKHSSCEFNSVLFSPPKRTELTSTSGGLGLTLHSSSVLDSKMSISQNLSHMLETKPFSSNKVHEDKLNCCEECASNYEKEAQFLRPAGQKKTLPFWLQSHGTEEQNKGNTKPVFDSIASIEGKEVKISLALGNDDSSEKQEKISTCYCRISFGSADLVLQLDMLKKETLIAPFSEMLLGALRKHQQLVVLIENVDSADTQFMKFLSDGYEKESLKL*